AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1397050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1397050 MtrunA17_Chr3g0127431 97.214 359 10 0 2 360 3 361 0.0 722
Msa1397050 MtrunA17_Chr3g0127401 78.385 384 78 3 7 388 5 385 0.0 597
Msa1397050 MtrunA17_Chr8g0387641 56.574 251 107 2 65 314 503 752 8.98e-91 291
Msa1397050 MtrunA17_Chr1g0195741 54.264 258 117 1 61 317 916 1173 2.00e-90 296
Msa1397050 MtrunA17_Chr1g0195731 52.030 271 127 2 61 328 912 1182 5.40e-90 295
Msa1397050 MtrunA17_Chr4g0038101 48.084 287 148 1 65 350 703 989 1.19e-87 285
Msa1397050 MtrunA17_Chr3g0116131 54.065 246 112 1 61 305 880 1125 8.80e-86 283
Msa1397050 MtrunA17_Chr5g0397121 52.964 253 117 2 62 313 492 743 1.66e-84 274
Msa1397050 MtrunA17_Chr6g0462581 48.485 297 126 5 62 333 479 773 3.18e-82 267
Msa1397050 MtrunA17_Chr1g0202381 52.227 247 116 2 65 310 450 695 3.58e-77 253
Msa1397050 MtrunA17_Chr1g0202371 44.728 313 141 3 65 351 379 685 1.72e-76 250
Msa1397050 MtrunA17_Chr1g0204031 51.626 246 117 2 65 309 539 783 1.35e-72 243
Msa1397050 MtrunA17_Chr7g0246111 42.086 278 149 5 42 309 162 437 3.00e-61 205
Msa1397050 MtrunA17_Chr4g0052271 42.379 269 142 7 82 341 118 382 6.15e-58 194
Msa1397050 MtrunA17_Chr6g0459561 38.516 283 165 6 71 348 371 649 3.00e-56 195
Msa1397050 MtrunA17_Chr6g0459541 36.364 297 156 6 82 348 41 334 4.54e-53 179
Msa1397050 MtrunA17_Chr2g0321241 41.202 233 130 5 82 311 131 359 1.02e-50 176
Msa1397050 MtrunA17_Chr4g0004121 38.868 265 147 6 83 334 242 504 1.42e-50 177
Msa1397050 MtrunA17_Chr4g0026631 40.773 233 131 5 82 311 126 354 6.32e-49 171
Msa1397050 MtrunA17_Chr7g0264521 35.816 282 168 7 82 356 478 753 5.44e-48 174
Msa1397050 MtrunA17_Chr7g0264521 38.034 234 136 4 82 311 205 433 3.67e-45 166
Msa1397050 MtrunA17_Chr1g0180791 34.397 282 173 6 82 356 477 753 2.03e-46 169
Msa1397050 MtrunA17_Chr1g0180791 38.655 238 136 5 79 311 200 432 1.20e-45 167
Msa1397050 MtrunA17_Chr2g0327121 35.461 282 170 7 82 356 479 755 2.89e-46 169
Msa1397050 MtrunA17_Chr2g0327121 35.821 268 162 4 82 342 206 470 1.78e-43 161
Msa1397050 MtrunA17_Chr3g0145011 37.705 244 144 4 69 307 125 365 7.67e-46 162
Msa1397050 MtrunA17_Chr6g0459551 33.019 318 173 9 64 348 84 394 1.82e-45 162
Msa1397050 MtrunA17_Chr3g0141901 37.295 244 145 4 69 307 122 362 4.37e-45 160
Msa1397050 MtrunA17_Chr6g0459531 33.210 271 148 5 82 348 66 307 3.12e-42 150
Msa1397050 MtrunA17_Chr8g0345461 38.197 233 132 6 82 307 164 391 1.95e-41 150
Msa1397050 MtrunA17_Chr7g0255901 35.036 274 150 8 38 304 611 863 2.44e-40 152
Msa1397050 MtrunA17_Chr1g0192151 36.957 230 135 5 84 307 168 393 4.79e-39 144
Msa1397050 MtrunA17_Chr4g0014731 36.957 230 135 5 84 307 169 394 5.51e-39 144
Msa1397050 MtrunA17_Chr1g0200081 37.768 233 132 7 82 307 174 400 7.37e-39 144
Msa1397050 MtrunA17_Chr4g0050561 37.179 234 136 5 82 308 155 384 1.88e-38 142
Msa1397050 MtrunA17_Chr7g0255721 34.894 235 142 5 83 311 685 914 3.02e-37 143
Msa1397050 MtrunA17_Chr7g0255721 35.079 191 115 5 122 307 422 608 1.65e-27 114
Msa1397050 MtrunA17_Chr2g0277831 36.214 243 144 6 85 321 245 482 2.29e-36 140
Msa1397050 MtrunA17_Chr2g0277831 30.043 233 156 4 82 310 532 761 4.49e-32 128
Msa1397050 MtrunA17_Chr7g0217421 39.056 233 127 6 83 307 39 264 4.95e-36 135
Msa1397050 MtrunA17_Chr4g0052411 38.197 233 129 6 83 307 229 454 6.52e-36 139
Msa1397050 MtrunA17_Chr3g0108321 43.011 186 94 5 82 260 158 338 1.47e-35 134
Msa1397050 MtrunA17_Chr7g0255641 34.043 235 144 5 83 311 658 887 2.21e-35 138
Msa1397050 MtrunA17_Chr7g0255641 29.960 247 156 8 81 321 391 626 8.38e-25 106
Msa1397050 MtrunA17_Chr7g0260601 36.820 239 127 8 83 307 240 468 9.24e-35 135
Msa1397050 MtrunA17_Chr2g0297281 37.339 233 131 6 83 307 286 511 1.50e-34 135
Msa1397050 MtrunA17_Chr6g0456351 37.179 234 139 4 78 307 312 541 1.59e-34 134
Msa1397050 MtrunA17_Chr4g0033451 35.341 249 144 7 72 308 367 610 1.96e-34 135
Msa1397050 MtrunA17_Chr1g0182711 36.087 230 137 5 85 308 190 415 2.06e-34 132
Msa1397050 MtrunA17_Chr3g0143721 37.344 241 136 5 83 315 249 482 8.58e-34 133
Msa1397050 MtrunA17_Chr7g0262801 35.652 230 138 5 85 308 189 414 1.03e-33 130
Msa1397050 MtrunA17_Chr4g0031821 36.250 240 127 8 83 307 320 548 1.76e-33 132
Msa1397050 MtrunA17_Chr2g0289231 32.234 273 166 7 82 344 296 559 4.20e-33 130
Msa1397050 MtrunA17_Chr3g0129971 39.095 243 127 9 83 311 296 531 3.85e-32 128
Msa1397050 MtrunA17_Chr7g0248361 37.500 240 124 9 83 307 192 420 6.85e-32 127
Msa1397050 MtrunA17_Chr4g0043381 31.186 295 185 6 85 367 839 1127 8.77e-32 127
Msa1397050 MtrunA17_Chr5g0432631 35.531 273 149 8 82 345 228 482 1.35e-31 127
Msa1397050 MtrunA17_Chr6g0476861 35.833 240 128 8 83 307 197 425 2.19e-31 125
Msa1397050 MtrunA17_Chr3g0135761 33.439 314 160 10 46 345 197 475 3.16e-31 125
Msa1397050 MtrunA17_Chr3g0135721 34.559 272 151 8 83 345 224 477 4.99e-31 125
Msa1397050 MtrunA17_Chr8g0362771 36.555 238 137 7 82 314 236 464 7.07e-31 124
Msa1397050 MtrunA17_Chr2g0327231 41.212 165 91 3 82 243 345 506 8.59e-31 123
Msa1397050 MtrunA17_Chr7g0255691 36.726 226 127 8 86 301 20 239 1.03e-30 123
Msa1397050 MtrunA17_Chr7g0255691 35.169 236 141 5 83 311 286 516 8.35e-30 120
Msa1397050 MtrunA17_Chr1g0158881 38.288 222 126 6 85 302 331 545 4.09e-30 122
Msa1397050 MtrunA17_Chr2g0331161 31.405 242 139 7 81 308 413 641 4.15e-30 122
Msa1397050 MtrunA17_Chr7g0255651 33.473 239 151 4 83 316 282 517 1.19e-29 120
Msa1397050 MtrunA17_Chr7g0255651 35.233 193 116 5 122 307 51 241 2.21e-24 105
Msa1397050 MtrunA17_Chr5g0429571 36.820 239 129 8 83 308 313 542 1.41e-29 120
Msa1397050 MtrunA17_Chr2g0316851 30.682 264 161 8 85 331 596 854 1.65e-29 120
Msa1397050 MtrunA17_Chr3g0094871 33.898 236 137 7 83 307 11 238 2.43e-29 118
Msa1397050 MtrunA17_Chr3g0104211 36.667 240 128 7 83 308 304 533 4.75e-29 119
Msa1397050 MtrunA17_Chr3g0086411 28.013 307 181 9 39 310 158 459 1.24e-28 117
Msa1397050 MtrunA17_Chr3g0086411 30.818 159 100 4 172 321 7 164 1.44e-14 75.1
Msa1397050 MtrunA17_Chr8g0388371 28.750 320 185 9 83 387 404 695 1.37e-27 115
Msa1397050 MtrunA17_Chr3g0086401 31.818 242 140 5 82 301 384 622 6.03e-27 112
Msa1397050 MtrunA17_Chr3g0086401 31.416 226 137 6 102 312 105 327 3.43e-23 101
Msa1397050 MtrunA17_Chr5g0432641 35.065 231 129 5 122 345 228 444 3.06e-26 110
Msa1397050 MtrunA17_Chr3g0135781 40.361 166 89 6 82 244 54 212 7.03e-24 98.6
Msa1397050 MtrunA17_Chr8g0357301 31.980 197 119 6 122 307 507 699 3.99e-22 98.6
Msa1397050 MtrunA17_Chr4g0047411 29.661 236 136 9 122 334 214 442 1.90e-17 84.3
Msa1397050 MtrunA17_Chr5g0404291 36.806 144 84 5 119 260 386 524 6.69e-17 82.4
Msa1397050 MtrunA17_Chr1g0190401 30.890 191 116 7 83 264 677 860 2.16e-16 81.3
Msa1397050 MtrunA17_Chr6g0450161 34.868 152 92 5 119 268 361 507 9.44e-16 79.0
Msa1397050 MtrunA17_Chr1g0168321 33.951 162 95 5 155 307 197 355 9.44e-16 79.0
Msa1397050 MtrunA17_Chr4g0039781 32.903 155 91 5 119 268 367 513 3.86e-15 77.0
Msa1397050 MtrunA17_Chr5g0432391 33.099 142 91 2 163 302 82 221 9.16e-14 72.4
Msa1397050 MtrunA17_Chr4g0062081 53.731 67 26 2 88 152 12 75 1.34e-13 66.2
Msa1397050 MtrunA17_Chr3g0116941 29.310 174 97 5 117 269 192 360 2.05e-12 68.6
Msa1397050 MtrunA17_Chr1g0204051 36.842 76 47 1 212 287 1 75 2.99e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1397050 AT4G27680.1 75.781 384 92 1 7 389 5 388 0.0 601
Msa1397050 AT5G53540.1 71.979 389 107 2 3 389 4 392 0.0 568
Msa1397050 AT4G24860.4 53.309 272 121 2 61 326 768 1039 4.40e-90 293
Msa1397050 AT4G24860.1 53.309 272 121 2 61 326 795 1066 5.40e-90 293
Msa1397050 AT4G24860.3 53.309 272 121 2 61 326 793 1064 6.88e-90 293
Msa1397050 AT4G24860.2 53.309 272 121 2 61 326 791 1062 7.38e-90 293
Msa1397050 AT1G64110.1 53.992 263 115 3 65 322 495 756 1.87e-89 287
Msa1397050 AT1G64110.2 53.992 263 115 3 65 322 500 761 1.99e-89 287
Msa1397050 AT1G64110.4 53.992 263 115 3 65 322 500 761 1.99e-89 287
Msa1397050 AT1G64110.5 53.992 263 115 3 65 322 498 759 2.02e-89 287
Msa1397050 AT1G64110.3 53.992 263 115 3 65 322 498 759 2.02e-89 287
Msa1397050 AT1G02890.1 45.808 334 151 4 15 333 888 1206 2.08e-89 293
Msa1397050 AT4G02480.1 54.980 251 112 1 61 310 938 1188 7.85e-89 292
Msa1397050 AT1G50140.2 47.931 290 150 1 62 350 668 957 9.43e-88 285
Msa1397050 AT1G50140.5 47.931 290 150 1 62 350 668 957 9.43e-88 285
Msa1397050 AT1G50140.3 47.931 290 150 1 62 350 690 979 1.33e-87 285
Msa1397050 AT1G50140.1 47.931 290 150 1 62 350 690 979 1.33e-87 285
Msa1397050 AT1G50140.4 47.931 290 150 1 62 350 690 979 1.33e-87 285
Msa1397050 AT3G19740.1 50.549 273 131 2 62 330 680 952 1.02e-84 278
Msa1397050 AT5G52882.1 51.894 264 124 3 61 323 492 753 6.49e-84 273
Msa1397050 AT4G28000.3 48.951 286 141 4 65 349 499 780 7.00e-83 269
Msa1397050 AT4G28000.1 48.951 286 141 4 65 349 497 778 9.22e-83 270
Msa1397050 AT4G28000.2 48.951 286 141 4 65 349 499 780 9.23e-83 270
Msa1397050 AT1G02890.2 41.018 334 139 5 15 333 888 1178 2.23e-70 240
Msa1397050 AT1G62130.2 46.269 268 125 4 47 314 715 963 9.02e-70 237
Msa1397050 AT1G62130.1 41.071 336 153 7 47 356 722 1038 1.07e-69 237
Msa1397050 AT2G45500.4 44.622 251 129 5 65 309 59 305 8.07e-65 211
Msa1397050 AT2G45500.3 44.622 251 129 5 65 309 59 305 8.07e-65 211
Msa1397050 AT2G45500.1 44.622 251 129 5 65 309 196 442 2.20e-63 211
Msa1397050 AT2G45500.2 44.622 251 129 5 65 309 192 438 2.46e-63 211
Msa1397050 AT2G45500.5 44.622 251 129 5 65 309 202 448 4.80e-63 210
Msa1397050 AT2G34560.1 40.426 282 150 7 69 341 92 364 6.83e-59 196
Msa1397050 AT2G34560.2 40.426 282 150 7 69 341 101 373 8.76e-59 196
Msa1397050 AT3G27120.1 39.161 286 159 7 71 348 389 667 2.04e-55 193
Msa1397050 AT1G80350.1 38.521 257 145 5 83 332 236 486 1.22e-50 178
Msa1397050 AT2G27600.1 40.343 233 132 5 82 311 128 356 3.18e-48 169
Msa1397050 AT5G03340.1 35.461 282 170 6 82 356 476 752 1.01e-47 174
Msa1397050 AT5G03340.1 38.034 234 136 4 82 311 203 431 6.88e-45 166
Msa1397050 AT1G45000.1 38.115 244 143 4 69 307 122 362 2.53e-46 164
Msa1397050 AT3G09840.1 34.276 283 172 6 82 356 476 752 1.15e-45 168
Msa1397050 AT3G09840.1 38.462 234 135 4 82 311 203 431 1.71e-45 167
Msa1397050 AT3G53230.1 36.694 248 147 5 82 322 477 721 1.58e-45 167
Msa1397050 AT3G53230.1 35.556 270 160 5 82 342 204 468 7.52e-45 166
Msa1397050 AT5G43010.1 37.295 244 145 4 69 307 122 362 2.79e-45 160
Msa1397050 AT1G53750.1 38.197 233 132 6 82 307 164 391 3.86e-41 150
Msa1397050 AT5G58290.1 35.249 261 152 6 82 330 151 406 5.71e-40 147
Msa1397050 AT1G03000.1 36.207 232 139 6 78 303 650 878 2.74e-39 150
Msa1397050 AT3G05530.1 36.797 231 134 5 84 307 169 394 4.65e-39 145
Msa1397050 AT5G19990.1 37.179 234 136 5 82 308 157 386 1.60e-38 143
Msa1397050 AT5G19990.3 37.179 234 136 5 82 308 157 386 1.60e-38 143
Msa1397050 AT5G19990.2 37.179 234 136 5 82 308 99 328 1.66e-38 142
Msa1397050 AT5G20000.1 37.179 234 136 5 82 308 157 386 2.13e-38 143
Msa1397050 AT1G53780.1 37.339 233 132 6 82 306 336 562 4.94e-38 144
Msa1397050 AT1G53780.4 37.339 233 132 6 82 306 336 562 4.94e-38 144
Msa1397050 AT1G53780.2 37.339 233 132 6 82 306 357 583 5.12e-38 145
Msa1397050 AT1G53780.3 37.339 233 132 6 82 306 335 561 5.46e-38 144
Msa1397050 AT1G09100.1 36.797 231 134 5 84 307 168 393 6.47e-38 141
Msa1397050 AT3G56690.1 35.294 238 143 5 83 314 721 953 1.45e-37 145
Msa1397050 AT3G56690.1 32.364 275 170 6 41 311 347 609 4.88e-37 143
Msa1397050 AT2G30950.4 38.197 233 129 6 83 307 228 453 1.89e-35 138
Msa1397050 AT2G30950.1 38.197 233 129 6 83 307 224 449 1.91e-35 138
Msa1397050 AT2G30950.2 38.197 233 129 6 83 307 224 449 1.91e-35 138
Msa1397050 AT2G30950.3 38.197 233 129 6 83 307 224 449 1.91e-35 138
Msa1397050 AT1G06430.1 38.627 233 128 6 83 307 217 442 2.14e-35 138
Msa1397050 AT1G06430.3 38.627 233 128 6 83 307 217 442 2.14e-35 138
Msa1397050 AT1G06430.2 38.627 233 128 6 83 307 217 442 2.14e-35 138
Msa1397050 AT5G15250.1 38.136 236 125 8 83 307 221 446 4.54e-35 137
Msa1397050 AT1G05910.1 35.341 249 144 7 72 308 365 608 5.70e-35 137
Msa1397050 AT2G03670.2 37.104 221 130 5 88 301 24 242 1.49e-34 132
Msa1397050 AT2G03670.2 38.596 114 69 1 83 196 283 395 3.91e-14 73.9
Msa1397050 AT3G01610.2 35.124 242 142 5 85 314 232 470 1.64e-34 135
Msa1397050 AT3G01610.2 33.476 233 146 5 82 310 524 751 7.00e-31 125
Msa1397050 AT3G01610.1 35.124 242 142 5 85 314 232 470 1.96e-34 135
Msa1397050 AT3G01610.1 33.476 233 146 5 82 310 524 751 7.42e-31 125
Msa1397050 AT3G02450.1 35.766 274 143 10 83 335 331 592 2.83e-34 134
Msa1397050 AT5G42270.1 36.929 241 137 5 83 315 247 480 7.11e-34 133
Msa1397050 AT4G29040.1 36.364 231 135 6 85 308 187 412 7.30e-34 131
Msa1397050 AT2G20140.1 36.364 231 135 6 85 308 187 412 8.23e-34 130
Msa1397050 AT2G03670.1 37.104 221 130 5 88 301 24 242 9.06e-34 132
Msa1397050 AT2G03670.1 34.483 232 143 5 83 308 283 511 2.02e-29 120
Msa1397050 AT1G50250.1 36.929 241 137 5 83 315 259 492 1.06e-33 133
Msa1397050 AT5G08470.1 34.583 240 152 3 85 322 843 1079 3.05e-32 129
Msa1397050 AT5G08470.3 34.583 240 152 3 85 322 834 1070 3.22e-32 129
Msa1397050 AT1G07510.1 35.685 241 129 8 83 308 324 553 7.21e-32 128
Msa1397050 AT2G29080.1 35.983 239 130 7 83 308 319 547 8.19e-32 127
Msa1397050 AT2G26140.1 37.668 223 129 5 84 302 225 441 5.15e-31 125
Msa1397050 AT5G53170.1 37.662 231 133 6 76 302 352 575 6.13e-31 125
Msa1397050 AT5G15250.2 34.601 263 128 9 83 311 221 473 8.64e-31 123
Msa1397050 AT3G47060.1 36.402 239 130 8 83 308 322 551 1.19e-30 124
Msa1397050 AT5G64580.1 37.037 243 132 9 83 311 313 548 3.21e-30 123
Msa1397050 AT5G58870.1 36.402 239 130 8 83 308 326 555 8.11e-30 122
Msa1397050 AT4G04180.2 31.349 252 152 6 82 321 310 552 1.68e-29 120
Msa1397050 AT4G04180.1 31.349 252 152 6 82 321 315 557 1.96e-29 120
Msa1397050 AT3G16290.1 30.605 281 161 9 81 342 405 670 1.10e-28 118
Msa1397050 AT4G23940.1 33.471 242 138 6 83 308 427 661 2.98e-28 117
Msa1397050 AT3G15120.2 29.502 261 167 6 85 331 728 985 5.75e-28 117
Msa1397050 AT3G15120.1 29.502 261 167 6 85 331 718 975 6.13e-28 116
Msa1397050 AT1G79560.3 35.354 198 113 6 122 308 527 720 2.80e-26 111
Msa1397050 AT1G79560.1 35.354 198 113 6 122 308 527 720 3.04e-26 111
Msa1397050 AT1G79560.2 35.354 198 113 6 122 308 527 720 3.22e-26 111
Msa1397050 AT1G45000.2 37.908 153 91 2 69 218 122 273 7.06e-25 104
Msa1397050 AT5G08470.2 35.000 160 100 3 85 244 843 998 1.71e-17 85.1
Msa1397050 AT4G04910.1 30.275 218 121 10 122 315 251 461 2.82e-16 81.3
Msa1397050 AT3G04340.1 31.156 199 118 8 75 264 776 964 4.25e-16 80.9
Msa1397050 AT2G18330.1 34.722 144 87 5 119 260 383 521 1.52e-15 79.0
Msa1397050 AT3G03060.1 32.895 152 95 5 120 269 385 531 8.34e-15 76.6
Msa1397050 AT5G16930.1 32.895 152 95 5 120 269 397 543 9.20e-15 76.3
Msa1397050 AT4G36580.1 34.028 144 88 5 119 260 380 518 2.36e-14 75.1

Find 92 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGTGTTCAAGAGCTTTCT+TGG 0.143860 tig0022126:+14042 None:intergenic
ATATCTCAACCCTCTCTTTC+TGG 0.149964 tig0022126:+12140 None:intergenic
ACAAACTTCGATTCTGATTC+TGG 0.222136 tig0022126:+14157 None:intergenic
CAATGAATTCTCTAAGCTTA+TGG 0.225338 tig0022126:-11152 Msa1397050:CDS
GTTTGCCCATGGGAAATTAT+TGG 0.237375 tig0022126:-13837 Msa1397050:CDS
GATATTGAAGGTTATCTTAA+AGG 0.238298 tig0022126:-12122 Msa1397050:CDS
TGGTGAGTCAGTTGATTATC+AGG 0.256999 tig0022126:-11188 Msa1397050:CDS
TATTTCTTCTGATTACTGTT+GGG 0.304748 tig0022126:-10860 Msa1397050:three_prime_UTR
AAACTGAGTTCATGGCTCTA+TGG 0.320401 tig0022126:-12402 Msa1397050:CDS
TTTGCCCATGGGAAATTATT+GGG 0.331921 tig0022126:-13836 Msa1397050:CDS
CTTATAAGCCAAGCTAAATA+TGG 0.332003 tig0022126:+12513 None:intergenic
TTCTTGGATGATTGACGGTT+CGG 0.333752 tig0022126:+14058 None:intergenic
TCATCCAGCAGTTCTCTAAT+AGG 0.339066 tig0022126:+11995 None:intergenic
GAGCGGCTTTCATTAATGTT+AGG 0.358887 tig0022126:-13733 Msa1397050:CDS
AAATATGAAAACTGAGTTCA+TGG 0.370471 tig0022126:-12410 Msa1397050:CDS
ATTCAAATGCTTAAGAATCC+TGG 0.378637 tig0022126:+11098 None:intergenic
GAAATAAAGTATGGCATGTA+TGG 0.379242 tig0022126:+10877 None:intergenic
TCTTGGATGATTGACGGTTC+GGG 0.382531 tig0022126:+14059 None:intergenic
GAAATTATTGGGTCCTCAAA+AGG 0.383190 tig0022126:-13825 Msa1397050:CDS
TTATTTCTTCTGATTACTGT+TGG 0.386748 tig0022126:-10861 Msa1397050:three_prime_UTR
TCAACCCTCTCTTTCTGGTC+TGG 0.390685 tig0022126:+12145 None:intergenic
TACTTTCGTTTAGCTTAGTC+CGG 0.399875 tig0022126:-11057 Msa1397050:three_prime_UTR
ATATTGAAGGTTATCTTAAA+GGG 0.410430 tig0022126:-12121 Msa1397050:CDS
TAATCAGAAGAAATAAAGTA+TGG 0.419837 tig0022126:+10868 None:intergenic
CAAAAGGGTGTCTTGTTGTA+TGG 0.420182 tig0022126:-13809 Msa1397050:CDS
CAGCTATTACATCTTCGTAT+TGG 0.422427 tig0022126:+13975 None:intergenic
AAGAATCCTGGGAATCTTGT+TGG 0.427563 tig0022126:+11110 None:intergenic
GATGTTGAATTCGACAGTAT+TGG 0.436396 tig0022126:-13926 Msa1397050:CDS
ATTTCTTCTGATTACTGTTG+GGG 0.443077 tig0022126:-10859 Msa1397050:three_prime_UTR
ATAGACTTCAATTATATAGC+TGG 0.444468 tig0022126:-12079 Msa1397050:CDS
ATTCGACAGTATTGGAGGAT+TGG 0.450311 tig0022126:-13918 Msa1397050:CDS
TTTCCTCAAGCCTTTGAAGT+TGG 0.462777 tig0022126:-12172 Msa1397050:CDS
CGGGTCAAGATATGAATAAC+CGG 0.463608 tig0022126:+14078 None:intergenic
AGTGTCTGCCATATTTAGCT+TGG 0.464625 tig0022126:-12521 Msa1397050:CDS
AGAATGCCCTTTCCACTTCA+CGG 0.470894 tig0022126:-11264 Msa1397050:CDS
GAGCTTTCTTGGATGATTGA+CGG 0.474974 tig0022126:+14053 None:intergenic
AGCAATAGCTTTAGCAAGCA+TGG 0.476844 tig0022126:+13766 None:intergenic
TCTATTTGATCTTTGCAAGA+AGG 0.478539 tig0022126:-12029 Msa1397050:CDS
TTGTATGGACCACCTGGTAC+TGG 0.480480 tig0022126:-13794 Msa1397050:CDS
GAACCACATACTCATGAGAT+TGG 0.480539 tig0022126:+13706 None:intergenic
AGAGAGGGTTGAGATATTGA+AGG 0.482658 tig0022126:-12134 Msa1397050:CDS
AACAATTCTGATCGTTTCAA+AGG 0.485349 tig0022126:+13857 None:intergenic
TCAAACTGCGACAAAGGTCT+AGG 0.485635 tig0022126:+11292 None:intergenic
TGCTGGATGACGAGAAGAAA+GGG 0.487745 tig0022126:-11982 Msa1397050:CDS
TGTAGAGAATGCTCGAGTTA+TGG 0.489871 tig0022126:-12248 Msa1397050:intron
TTCAAATGCTTAAGAATCCT+GGG 0.495703 tig0022126:+11099 None:intergenic
AATTCAACATCGATGTGGTC+AGG 0.498147 tig0022126:+13938 None:intergenic
CGATCAGAATTGTTTGCCCA+TGG 0.502032 tig0022126:-13848 Msa1397050:CDS
AAGTAATCGCTGTTGCAATC+CGG 0.509702 tig0022126:+11038 None:intergenic
CGTCGTCCGTGAAGTGGAAA+GGG 0.510369 tig0022126:+11258 None:intergenic
TCTAAATCAAACTGCGACAA+AGG 0.511155 tig0022126:+11286 None:intergenic
ACGGCTGTTGCAAGCGAGTA+CGG 0.511325 tig0022126:-11238 Msa1397050:CDS
AAATTATTGGGTCCTCAAAA+GGG 0.514841 tig0022126:-13824 Msa1397050:CDS
AACTGAGTTCATGGCTCTAT+GGG 0.515199 tig0022126:-12401 Msa1397050:CDS
CCGTCGTCCGTGAAGTGGAA+AGG 0.521667 tig0022126:+11257 None:intergenic
TATATAGCTGGTTTATGCAA+GGG 0.522653 tig0022126:-12067 Msa1397050:CDS
GTTGAATTCGACAGTATTGG+AGG 0.522863 tig0022126:-13923 Msa1397050:CDS
GTCTGGAATTCCAACTTCAA+AGG 0.530935 tig0022126:+12162 None:intergenic
GAGTTCATGGCTCTATGGGA+TGG 0.533268 tig0022126:-12397 Msa1397050:CDS
AGTTCATGGCTCTATGGGAT+GGG 0.534957 tig0022126:-12396 Msa1397050:CDS
TAACCTCCAACAAGATTCCC+AGG 0.537269 tig0022126:-11116 Msa1397050:CDS
GTCTTGTTGTATGGACCACC+TGG 0.542959 tig0022126:-13800 Msa1397050:CDS
TTCGGCGATGCAACTAAGCT+TGG 0.543662 tig0022126:-13686 Msa1397050:intron
GAGGACCCAATAATTTCCCA+TGG 0.545445 tig0022126:+13831 None:intergenic
TTATATAGCTGGTTTATGCA+AGG 0.548540 tig0022126:-12068 Msa1397050:CDS
GATCAGAATTGTTTGCCCAT+GGG 0.551579 tig0022126:-13847 Msa1397050:CDS
CAATACGAAGATGTAATAGC+TGG 0.551680 tig0022126:-13974 Msa1397050:CDS
CTGCTGGATGACGAGAAGAA+AGG 0.553382 tig0022126:-11983 Msa1397050:CDS
AAAGCAATTGCAAATCGTCT+TGG 0.556831 tig0022126:-14019 Msa1397050:CDS
TCATCAATGAATATGATAGC+AGG 0.558085 tig0022126:+12484 None:intergenic
AATCCTGGGAATCTTGTTGG+AGG 0.558745 tig0022126:+11113 None:intergenic
AACAGCCGTCGTCCGTGAAG+TGG 0.561036 tig0022126:+11252 None:intergenic
ATTGCTTCATCAAGTTCTGA+AGG 0.564553 tig0022126:+12205 None:intergenic
GGTTTATGCAAGGGTTACAC+AGG 0.570100 tig0022126:-12058 Msa1397050:CDS
AATCTCATGAGTATGTGGTT+CGG 0.571376 tig0022126:-13704 Msa1397050:CDS
TGTCCAATCTCATGAGTATG+TGG 0.573878 tig0022126:-13709 Msa1397050:CDS
ATTCCAACTTCAAAGGCTTG+AGG 0.586616 tig0022126:+12169 None:intergenic
GGTTATCTTAAAGGGCGAGA+GGG 0.590443 tig0022126:-12113 Msa1397050:CDS
GGTGAGTCAGTTGATTATCA+GGG 0.595184 tig0022126:-11187 Msa1397050:CDS
AAAGCTATTGCTAAGGAGTG+TGG 0.598472 tig0022126:-13755 Msa1397050:CDS
AGGACCCAATAATTTCCCAT+GGG 0.606775 tig0022126:+13832 None:intergenic
GCTTGCTAAAGCTATTGCTA+AGG 0.615516 tig0022126:-13762 Msa1397050:CDS
GAATTCCAGACCAGAAAGAG+AGG 0.625831 tig0022126:-12150 Msa1397050:CDS
TTGCTTCATCAAGTTCTGAA+GGG 0.630399 tig0022126:+12206 None:intergenic
CCTTTCCACTTCACGGACGA+CGG 0.635737 tig0022126:-11257 Msa1397050:CDS
AACTTGATGAAGCAATACTT+CGG 0.636206 tig0022126:-12198 Msa1397050:CDS
AGGTTATCTTAAAGGGCGAG+AGG 0.640020 tig0022126:-12114 Msa1397050:CDS
TATTGCTAAGGAGTGTGGAG+CGG 0.650592 tig0022126:-13750 Msa1397050:CDS
AGTTGCTTAATATTGTACAC+CGG 0.650727 tig0022126:-14097 Msa1397050:CDS
AATTCCAGACCAGAAAGAGA+GGG 0.661161 tig0022126:-12149 Msa1397050:CDS
ACGTCGTTCATCAGAACACG+AGG 0.705850 tig0022126:-12440 Msa1397050:CDS
TGTCGAATTCAACATCGATG+TGG 0.707499 tig0022126:+13933 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACATAAAAATAAAATAACA+CGG + tig0022126:13628-13647 None:intergenic 10.0%
!!! TTATTTTATTTTTATGTTTC+AGG - tig0022126:13630-13649 Msa1397050:intron 10.0%
!! GATTAGATACAATTATATTA+GGG + tig0022126:12335-12354 None:intergenic 15.0%
!! AGATTAGATACAATTATATT+AGG + tig0022126:12336-12355 None:intergenic 15.0%
!! AATAACATAATATTAACGAT+AGG + tig0022126:12399-12418 None:intergenic 15.0%
!! TAAAAAAAAACTGGTAAAAT+TGG - tig0022126:13344-13363 Msa1397050:intron 15.0%
!!! AACTGATTTGATTTTATTAG+CGG - tig0022126:10813-10832 Msa1397050:three_prime_UTR 20.0%
!!! TAATCAATTTGCAAGATTTT+GGG + tig0022126:11382-11401 None:intergenic 20.0%
!!! TTAATCAATTTGCAAGATTT+TGG + tig0022126:11383-11402 None:intergenic 20.0%
!! AAATCTTGCAAATTGATTAA+AGG - tig0022126:11383-11402 Msa1397050:intron 20.0%
!! AGTTATATTACATTTACAAG+AGG + tig0022126:11665-11684 None:intergenic 20.0%
!! AAAATATTATAAACAACTCC+AGG - tig0022126:12056-12075 Msa1397050:CDS 20.0%
!! TTCATTAGAATATTTAACGA+GGG - tig0022126:12273-12292 Msa1397050:intron 20.0%
!!! TATTTTGAAAATTTATGCCA+TGG + tig0022126:12624-12643 None:intergenic 20.0%
!!! GCATAAATTTTCAAAATATG+AGG - tig0022126:12626-12645 Msa1397050:intron 20.0%
!! ATATTGAAGGTTATCTTAAA+GGG - tig0022126:12826-12845 Msa1397050:intron 20.0%
!! AAAAATGATAATATCCACTA+TGG + tig0022126:13314-13333 None:intergenic 20.0%
!!! ATTTCACTTTTAAACAATTC+GGG + tig0022126:13413-13432 None:intergenic 20.0%
!!! GATTTCACTTTTAAACAATT+CGG + tig0022126:13414-13433 None:intergenic 20.0%
!! TAATCAGAAGAAATAAAGTA+TGG + tig0022126:14082-14101 None:intergenic 20.0%
!!! TATTGGTTTGTTTTAATGAG+GGG + tig0022126:10958-10977 None:intergenic 25.0%
!!! GTATTGGTTTGTTTTAATGA+GGG + tig0022126:10959-10978 None:intergenic 25.0%
!! AATCAATTTGCAAGATTTTG+GGG + tig0022126:11381-11400 None:intergenic 25.0%
!! TTTTTGCTTTGATGTATCTA+TGG - tig0022126:11453-11472 Msa1397050:intron 25.0%
! ATAGCAGAAAAGGTTAATAT+TGG + tig0022126:11485-11504 None:intergenic 25.0%
! TTCATTCTGTTTGATAGATA+AGG - tig0022126:11865-11884 Msa1397050:intron 25.0%
!! AATGATAGTGACCTTTATAT+TGG - tig0022126:11924-11943 Msa1397050:intron 25.0%
!! ATGATAGTGACCTTTATATT+GGG - tig0022126:11925-11944 Msa1397050:intron 25.0%
!! AAACTTGTTTCCCAATATAA+AGG + tig0022126:11938-11957 None:intergenic 25.0%
! AATAATTAGAGAACCAACAA+GGG + tig0022126:12183-12202 None:intergenic 25.0%
! CTTCATTAGAATATTTAACG+AGG - tig0022126:12272-12291 Msa1397050:intron 25.0%
!! AATGTTTTTCATTTTGAACG+TGG - tig0022126:12367-12386 Msa1397050:intron 25.0%
! AAATATGAAAACTGAGTTCA+TGG - tig0022126:12537-12556 Msa1397050:intron 25.0%
! GATATTGAAGGTTATCTTAA+AGG - tig0022126:12825-12844 Msa1397050:intron 25.0%
! ATAGACTTCAATTATATAGC+TGG - tig0022126:12868-12887 Msa1397050:intron 25.0%
!! TTATTTCTTCTGATTACTGT+TGG - tig0022126:14086-14105 Msa1397050:CDS 25.0%
! TATTTCTTCTGATTACTGTT+GGG - tig0022126:14087-14106 Msa1397050:CDS 25.0%
AGTTGCTTAATATTGTACAC+CGG - tig0022126:10850-10869 Msa1397050:three_prime_UTR 30.0%
!!! CGTATTGGTTTGTTTTAATG+AGG + tig0022126:10960-10979 None:intergenic 30.0%
AACAATTCTGATCGTTTCAA+AGG + tig0022126:11093-11112 None:intergenic 30.0%
AAATTATTGGGTCCTCAAAA+GGG - tig0022126:11123-11142 Msa1397050:CDS 30.0%
TATTAATGATGCACATTCAC+TGG + tig0022126:11346-11365 None:intergenic 30.0%
! ATCAATTTGCAAGATTTTGG+GGG + tig0022126:11380-11399 None:intergenic 30.0%
! TAAAGGACTCACAATGATTT+TGG - tig0022126:11400-11419 Msa1397050:intron 30.0%
! AACCTTTTCTGCTATAAAAC+CGG - tig0022126:11490-11509 Msa1397050:intron 30.0%
AGCAACCTCAATGATAAAAA+AGG + tig0022126:11767-11786 None:intergenic 30.0%
ATTGCCATTAGATAAACAGA+TGG + tig0022126:11891-11910 None:intergenic 30.0%
ATTATAAACAACTCCAGGTT+TGG - tig0022126:12061-12080 Msa1397050:CDS 30.0%
! CAGGTTTGGAATTAGTAAAA+GGG - tig0022126:12075-12094 Msa1397050:CDS 30.0%
CAATAATTAGAGAACCAACA+AGG + tig0022126:12184-12203 None:intergenic 30.0%
! TTGTTGATTAGCAAAATGTG+TGG - tig0022126:12201-12220 Msa1397050:CDS 30.0%
TAGCAAAATGTGTGGTTATT+TGG - tig0022126:12209-12228 Msa1397050:CDS 30.0%
! TTTCATTTTGAACGTGGTTT+TGG - tig0022126:12373-12392 Msa1397050:intron 30.0%
CTTATAAGCCAAGCTAAATA+TGG + tig0022126:12437-12456 None:intergenic 30.0%
TCATCAATGAATATGATAGC+AGG + tig0022126:12466-12485 None:intergenic 30.0%
!!! TGATGAAGTAGACAGTTTTT+TGG - tig0022126:12480-12499 Msa1397050:CDS 30.0%
!!! GATGAAGTAGACAGTTTTTT+GGG - tig0022126:12481-12500 Msa1397050:CDS 30.0%
!! GTCAACTACTTTAGAACTTA+CGG + tig0022126:12588-12607 None:intergenic 30.0%
! TGACACTTAATTTTCATCCA+TGG - tig0022126:12604-12623 Msa1397050:intron 30.0%
AACTTGATGAAGCAATACTT+CGG - tig0022126:12749-12768 Msa1397050:intron 30.0%
! TTATATAGCTGGTTTATGCA+AGG - tig0022126:12879-12898 Msa1397050:intron 30.0%
! TATATAGCTGGTTTATGCAA+GGG - tig0022126:12880-12899 Msa1397050:intron 30.0%
TCTATTTGATCTTTGCAAGA+AGG - tig0022126:12918-12937 Msa1397050:intron 30.0%
TGTCTAGAAGAGAAAACTAA+AGG - tig0022126:13135-13154 Msa1397050:intron 30.0%
! TCGCACAAATCTAAAACTTA+GGG + tig0022126:13180-13199 None:intergenic 30.0%
! ATCGCACAAATCTAAAACTT+AGG + tig0022126:13181-13200 None:intergenic 30.0%
!! GTTTTAGATTTGTGCGATTT+TGG - tig0022126:13183-13202 Msa1397050:intron 30.0%
AATTAGGGAAAAACATGTGA+GGG + tig0022126:13243-13262 None:intergenic 30.0%
AAATTAGGGAAAAACATGTG+AGG + tig0022126:13244-13263 None:intergenic 30.0%
!! TACGGCAAATTTTAATGACA+TGG - tig0022126:13272-13291 Msa1397050:intron 30.0%
!!! TAATTTTGAAGTGAAGGGAA+AGG + tig0022126:13452-13471 None:intergenic 30.0%
TTTCCCTTCACTTCAAAATT+AGG - tig0022126:13451-13470 Msa1397050:intron 30.0%
TTCCCTTCACTTCAAAATTA+GGG - tig0022126:13452-13471 Msa1397050:intron 30.0%
!!! TTCCCTAATTTTGAAGTGAA+GGG + tig0022126:13457-13476 None:intergenic 30.0%
!!! TTTCCCTAATTTTGAAGTGA+AGG + tig0022126:13458-13477 None:intergenic 30.0%
CAATGAATTCTCTAAGCTTA+TGG - tig0022126:13795-13814 Msa1397050:CDS 30.0%
TTCAAATGCTTAAGAATCCT+GGG + tig0022126:13851-13870 None:intergenic 30.0%
ATTCAAATGCTTAAGAATCC+TGG + tig0022126:13852-13871 None:intergenic 30.0%
GAAATAAAGTATGGCATGTA+TGG + tig0022126:14073-14092 None:intergenic 30.0%
ATTTCTTCTGATTACTGTTG+GGG - tig0022126:14088-14107 Msa1397050:CDS 30.0%
ACAAACTTCGATTCTGATTC+TGG + tig0022126:10793-10812 None:intergenic 35.0%
AAAGCAATTGCAAATCGTCT+TGG - tig0022126:10928-10947 Msa1397050:three_prime_UTR 35.0%
CAGCTATTACATCTTCGTAT+TGG + tig0022126:10975-10994 None:intergenic 35.0%
CAATACGAAGATGTAATAGC+TGG - tig0022126:10973-10992 Msa1397050:intron 35.0%
GATGTTGAATTCGACAGTAT+TGG - tig0022126:11021-11040 Msa1397050:three_prime_UTR 35.0%
TTTGCCCATGGGAAATTATT+GGG - tig0022126:11111-11130 Msa1397050:CDS 35.0%
GAAATTATTGGGTCCTCAAA+AGG - tig0022126:11122-11141 Msa1397050:CDS 35.0%
AATCTCATGAGTATGTGGTT+CGG - tig0022126:11243-11262 Msa1397050:CDS 35.0%
GAAAAGGTTAATATTGGCCA+GGG + tig0022126:11479-11498 None:intergenic 35.0%
AGAAAAGGTTAATATTGGCC+AGG + tig0022126:11480-11499 None:intergenic 35.0%
GTTTGTCTTGTCGTTCAAAA+AGG + tig0022126:11519-11538 None:intergenic 35.0%
TTAGACACACAGCAACATAT+TGG + tig0022126:11606-11625 None:intergenic 35.0%
ATATGTTGCTGTGTGTCTAA+TGG - tig0022126:11606-11625 Msa1397050:intron 35.0%
AACCATTACGGATCTATTGT+AGG + tig0022126:11700-11719 None:intergenic 35.0%
!!! GGTTGCCTTTTTTATCATTG+AGG - tig0022126:11759-11778 Msa1397050:intron 35.0%
AAGGCCATCTGTTTATCTAA+TGG - tig0022126:11884-11903 Msa1397050:intron 35.0%
TAGAAACCAGTTCCAATATC+AGG + tig0022126:12026-12045 None:intergenic 35.0%
! TGATATTGGAACTGGTTTCT+AGG - tig0022126:12025-12044 Msa1397050:CDS 35.0%
! CCTTTTACTAATTCCAAACC+TGG + tig0022126:12077-12096 None:intergenic 35.0%
! CCAGGTTTGGAATTAGTAAA+AGG - tig0022126:12074-12093 Msa1397050:CDS 35.0%
ATGTGTGGTTATTTGGTTGA+AGG - tig0022126:12216-12235 Msa1397050:CDS 35.0%
!! ACTACTTTAGAACTTACGGT+CGG + tig0022126:12584-12603 None:intergenic 35.0%
!! TTGCTTCATCAAGTTCTGAA+GGG + tig0022126:12744-12763 None:intergenic 35.0%
! ATTGCTTCATCAAGTTCTGA+AGG + tig0022126:12745-12764 None:intergenic 35.0%
! TTTTCCTATTAGAGAACTGC+TGG - tig0022126:12948-12967 Msa1397050:intron 35.0%
AACAGAAACTGAAACAGATG+TGG + tig0022126:13116-13135 None:intergenic 35.0%
! CACAAATCTAAAACTTAGGG+GGG + tig0022126:13177-13196 None:intergenic 35.0%
! GCACAAATCTAAAACTTAGG+GGG + tig0022126:13178-13197 None:intergenic 35.0%
! CGCACAAATCTAAAACTTAG+GGG + tig0022126:13179-13198 None:intergenic 35.0%
ATCATAAAGGGGCTAAACTT+GGG + tig0022126:13212-13231 None:intergenic 35.0%
AATCATAAAGGGGCTAAACT+TGG + tig0022126:13213-13232 None:intergenic 35.0%
AGGGGCTACAAAATCATAAA+GGG + tig0022126:13224-13243 None:intergenic 35.0%
ATTAGGGAAAAACATGTGAG+GGG + tig0022126:13242-13261 None:intergenic 35.0%
! TCCCTAATTTTGAGCTGATA+CGG - tig0022126:13254-13273 Msa1397050:intron 35.0%
! AAATTAGGGAAAAGCATGTG+AGG - tig0022126:13466-13485 Msa1397050:intron 35.0%
! AATTAGGGAAAAGCATGTGA+GGG - tig0022126:13467-13486 Msa1397050:intron 35.0%
! AGTCTTGTACTCTTGTTAAC+TGG - tig0022126:13574-13593 Msa1397050:intron 35.0%
TCAGTAATTTCGATCACCAA+AGG + tig0022126:13604-13623 None:intergenic 35.0%
TCTAAATCAAACTGCGACAA+AGG + tig0022126:13664-13683 None:intergenic 35.0%
! TACTTTCGTTTAGCTTAGTC+CGG - tig0022126:13890-13909 Msa1397050:CDS 35.0%
!! TGTTGTTTACAAAAGTGCCA+AGG - tig0022126:13985-14004 Msa1397050:CDS 35.0%
CGGGTCAAGATATGAATAAC+CGG + tig0022126:10872-10891 None:intergenic 40.0%
TTCTTGGATGATTGACGGTT+CGG + tig0022126:10892-10911 None:intergenic 40.0%
GAGCTTTCTTGGATGATTGA+CGG + tig0022126:10897-10916 None:intergenic 40.0%
CTTGTGTTCAAGAGCTTTCT+TGG + tig0022126:10908-10927 None:intergenic 40.0%
AATTCAACATCGATGTGGTC+AGG + tig0022126:11012-11031 None:intergenic 40.0%
TGTCGAATTCAACATCGATG+TGG + tig0022126:11017-11036 None:intergenic 40.0%
! GTTGAATTCGACAGTATTGG+AGG - tig0022126:11024-11043 Msa1397050:three_prime_UTR 40.0%
! ATTCGACAGTATTGGAGGAT+TGG - tig0022126:11029-11048 Msa1397050:three_prime_UTR 40.0%
GATCAGAATTGTTTGCCCAT+GGG - tig0022126:11100-11119 Msa1397050:exon 40.0%
GTTTGCCCATGGGAAATTAT+TGG - tig0022126:11110-11129 Msa1397050:CDS 40.0%
AGGACCCAATAATTTCCCAT+GGG + tig0022126:11118-11137 None:intergenic 40.0%
! TACAACAAGACACCCTTTTG+AGG + tig0022126:11138-11157 None:intergenic 40.0%
!! CAAAAGGGTGTCTTGTTGTA+TGG - tig0022126:11138-11157 Msa1397050:CDS 40.0%
!! AGCAATAGCTTTAGCAAGCA+TGG + tig0022126:11184-11203 None:intergenic 40.0%
! GCTTGCTAAAGCTATTGCTA+AGG - tig0022126:11185-11204 Msa1397050:CDS 40.0%
AAAGCTATTGCTAAGGAGTG+TGG - tig0022126:11192-11211 Msa1397050:CDS 40.0%
GAGCGGCTTTCATTAATGTT+AGG - tig0022126:11214-11233 Msa1397050:CDS 40.0%
TGTCCAATCTCATGAGTATG+TGG - tig0022126:11238-11257 Msa1397050:CDS 40.0%
GAACCACATACTCATGAGAT+TGG + tig0022126:11244-11263 None:intergenic 40.0%
!! AGCCGGTTTTATAGCAGAAA+AGG + tig0022126:11495-11514 None:intergenic 40.0%
TTGTCGTTCAAAAAGGTAGC+CGG + tig0022126:11512-11531 None:intergenic 40.0%
TGCCTACAATAGATCCGTAA+TGG - tig0022126:11695-11714 Msa1397050:intron 40.0%
!! GGAAAGGTTCTGAACCATTA+CGG + tig0022126:11712-11731 None:intergenic 40.0%
AATGCCCATAAATCGATCGA+GGG + tig0022126:11980-11999 None:intergenic 40.0%
AAATGCCCATAAATCGATCG+AGG + tig0022126:11981-12000 None:intergenic 40.0%
TTAGCTGCTAAGCCTGATAT+TGG - tig0022126:12011-12030 Msa1397050:CDS 40.0%
!! AATATTTAACGAGGGCATCC+TGG - tig0022126:12281-12300 Msa1397050:intron 40.0%
GAAGCATAGTTATGTATGCC+AGG + tig0022126:12302-12321 None:intergenic 40.0%
AGTGTCTGCCATATTTAGCT+TGG - tig0022126:12426-12445 Msa1397050:CDS 40.0%
! AAACTGAGTTCATGGCTCTA+TGG - tig0022126:12545-12564 Msa1397050:intron 40.0%
! AACTGAGTTCATGGCTCTAT+GGG - tig0022126:12546-12565 Msa1397050:intron 40.0%
TAACTCGAGCATTCTCTACA+CGG + tig0022126:12699-12718 None:intergenic 40.0%
TGTAGAGAATGCTCGAGTTA+TGG - tig0022126:12699-12718 Msa1397050:intron 40.0%
!! TTTCCTCAAGCCTTTGAAGT+TGG - tig0022126:12775-12794 Msa1397050:intron 40.0%
ATTCCAACTTCAAAGGCTTG+AGG + tig0022126:12781-12800 None:intergenic 40.0%
! GTCTGGAATTCCAACTTCAA+AGG + tig0022126:12788-12807 None:intergenic 40.0%
AATTCCAGACCAGAAAGAGA+GGG - tig0022126:12798-12817 Msa1397050:intron 40.0%
ATATCTCAACCCTCTCTTTC+TGG + tig0022126:12810-12829 None:intergenic 40.0%
AGAGAGGGTTGAGATATTGA+AGG - tig0022126:12813-12832 Msa1397050:intron 40.0%
TCATCCAGCAGTTCTCTAAT+AGG + tig0022126:12955-12974 None:intergenic 40.0%
TCATAAAGGGGCTAAACTTG+GGG + tig0022126:13211-13230 None:intergenic 40.0%
GGGGCTACAAAATCATAAAG+GGG + tig0022126:13223-13242 None:intergenic 40.0%
GAGGGGCTACAAAATCATAA+AGG + tig0022126:13225-13244 None:intergenic 40.0%
GCCGTATCAGCTCAAAATTA+GGG + tig0022126:13258-13277 None:intergenic 40.0%
TGCCGTATCAGCTCAAAATT+AGG + tig0022126:13259-13278 None:intergenic 40.0%
AAATGCAGAACTGAAGGGAA+AGG + tig0022126:13382-13401 None:intergenic 40.0%
CAAGCAAATGCAGAACTGAA+GGG + tig0022126:13387-13406 None:intergenic 40.0%
ACAAGCAAATGCAGAACTGA+AGG + tig0022126:13388-13407 None:intergenic 40.0%
! ATTAGGGAAAAGCATGTGAG+GGG - tig0022126:13468-13487 Msa1397050:intron 40.0%
AGGGGCTACAAAATCATGAA+GGG - tig0022126:13486-13505 Msa1397050:intron 40.0%
! TCATCAAGACGAACGTTTTC+TGG - tig0022126:13739-13758 Msa1397050:CDS 40.0%
TGGTGAGTCAGTTGATTATC+AGG - tig0022126:13759-13778 Msa1397050:CDS 40.0%
GGTGAGTCAGTTGATTATCA+GGG - tig0022126:13760-13779 Msa1397050:CDS 40.0%
AAGAATCCTGGGAATCTTGT+TGG + tig0022126:13840-13859 None:intergenic 40.0%
AAGTAATCGCTGTTGCAATC+CGG + tig0022126:13912-13931 None:intergenic 40.0%
!! GTTTACAAAAGTGCCAAGGT+TGG - tig0022126:13989-14008 Msa1397050:CDS 40.0%
TCTTGGATGATTGACGGTTC+GGG + tig0022126:10891-10910 None:intergenic 45.0%
CGATCAGAATTGTTTGCCCA+TGG - tig0022126:11099-11118 Msa1397050:exon 45.0%
GAGGACCCAATAATTTCCCA+TGG + tig0022126:11119-11138 None:intergenic 45.0%
! TATTGCTAAGGAGTGTGGAG+CGG - tig0022126:11197-11216 Msa1397050:CDS 45.0%
CTTTGATGTATCTATGGCCC+TGG - tig0022126:11459-11478 Msa1397050:intron 45.0%
TGCTGTGTGTCTAATGGTCA+CGG - tig0022126:11612-11631 Msa1397050:intron 45.0%
CTACGAAATTCCACTGTGGT+GGG + tig0022126:11740-11759 None:intergenic 45.0%
CAACCTACGAAATTCCACTG+TGG + tig0022126:11744-11763 None:intergenic 45.0%
GCTAAGCCTGATATTGGAAC+TGG - tig0022126:12017-12036 Msa1397050:CDS 45.0%
!! TGGAACTGGTTTCTAGGATG+AGG - tig0022126:12031-12050 Msa1397050:CDS 45.0%
TCCTGAACGAGGAACATACA+GGG + tig0022126:12137-12156 None:intergenic 45.0%
TACAGATACACTCCTGAACG+AGG + tig0022126:12148-12167 None:intergenic 45.0%
GGAGTGTATCTGTATAGCGA+TGG - tig0022126:12154-12173 Msa1397050:CDS 45.0%
! AGTTCATGGCTCTATGGGAT+GGG - tig0022126:12551-12570 Msa1397050:intron 45.0%
GAATTCCAGACCAGAAAGAG+AGG - tig0022126:12797-12816 Msa1397050:intron 45.0%
AGGTTATCTTAAAGGGCGAG+AGG - tig0022126:12833-12852 Msa1397050:intron 45.0%
GGTTATCTTAAAGGGCGAGA+GGG - tig0022126:12834-12853 Msa1397050:intron 45.0%
GGTTTATGCAAGGGTTACAC+AGG - tig0022126:12889-12908 Msa1397050:intron 45.0%
TGCTGGATGACGAGAAGAAA+GGG - tig0022126:12965-12984 Msa1397050:intron 45.0%
AATATGCTGTGCACAGCTGT+TGG - tig0022126:13068-13087 Msa1397050:intron 45.0%
ATAAAGGGGCTAAACTTGGG+GGG + tig0022126:13209-13228 None:intergenic 45.0%
CATAAAGGGGCTAAACTTGG+GGG + tig0022126:13210-13229 None:intergenic 45.0%
!! GCTTGCTATGTTTGCCATAG+TGG - tig0022126:13297-13316 Msa1397050:intron 45.0%
GAGGGGCTACAAAATCATGA+AGG - tig0022126:13485-13504 Msa1397050:intron 45.0%
AGAATGTTGTGCTGGATGTG+TGG - tig0022126:13523-13542 Msa1397050:intron 45.0%
TCAAACTGCGACAAAGGTCT+AGG + tig0022126:13658-13677 None:intergenic 45.0%
AGAATGCCCTTTCCACTTCA+CGG - tig0022126:13683-13702 Msa1397050:intron 45.0%
TAACCTCCAACAAGATTCCC+AGG - tig0022126:13831-13850 Msa1397050:CDS 45.0%
AATCCTGGGAATCTTGTTGG+AGG + tig0022126:13837-13856 None:intergenic 45.0%
CAAAATGCAACAGCCAACCT+TGG + tig0022126:14005-14024 None:intergenic 45.0%
!!! TTTTTTTTATAAAAAAAAAC+TGG - tig0022126:13335-13354 Msa1397050:intron 5.0%
! GATTTTATTAGCGGCGAGCG+CGG - tig0022126:10822-10841 Msa1397050:three_prime_UTR 50.0%
! GTCTTGTTGTATGGACCACC+TGG - tig0022126:11147-11166 Msa1397050:CDS 50.0%
TTGTATGGACCACCTGGTAC+TGG - tig0022126:11153-11172 Msa1397050:CDS 50.0%
!! ATGGTTTTGCCAGTACCAGG+TGG + tig0022126:11165-11184 None:intergenic 50.0%
!! AGCATGGTTTTGCCAGTACC+AGG + tig0022126:11168-11187 None:intergenic 50.0%
TTCGGCGATGCAACTAAGCT+TGG - tig0022126:11261-11280 Msa1397050:CDS 50.0%
! ACTGTGGTGGGATCTAGGAA+AGG + tig0022126:11728-11747 None:intergenic 50.0%
TTTCCTAGATCCCACCACAG+TGG - tig0022126:11727-11746 Msa1397050:intron 50.0%
! ATTCCACTGTGGTGGGATCT+AGG + tig0022126:11733-11752 None:intergenic 50.0%
CCTACGAAATTCCACTGTGG+TGG + tig0022126:11741-11760 None:intergenic 50.0%
CCACCACAGTGGAATTTCGT+AGG - tig0022126:11738-11757 Msa1397050:intron 50.0%
AAACCTGCAGGGAGTTCAGT+CGG + tig0022126:11808-11827 None:intergenic 50.0%
! TCCCTCCCTCGATCGATTTA+TGG - tig0022126:11972-11991 Msa1397050:CDS 50.0%
CCCATAAATCGATCGAGGGA+GGG + tig0022126:11976-11995 None:intergenic 50.0%
! CCCTCCCTCGATCGATTTAT+GGG - tig0022126:11973-11992 Msa1397050:CDS 50.0%
TCCCTGTATGTTCCTCGTTC+AGG - tig0022126:12133-12152 Msa1397050:CDS 50.0%
CTCCTGAACGAGGAACATAC+AGG + tig0022126:12138-12157 None:intergenic 50.0%
ATAGCGATGGCTACCCTTGT+TGG - tig0022126:12167-12186 Msa1397050:CDS 50.0%
GAAGCTGTTTGTGCGCACAT+AGG - tig0022126:12242-12261 Msa1397050:CDS 50.0%
ACGTCGTTCATCAGAACACG+AGG - tig0022126:12507-12526 Msa1397050:CDS 50.0%
! GAGTTCATGGCTCTATGGGA+TGG - tig0022126:12550-12569 Msa1397050:intron 50.0%
! TCAACCCTCTCTTTCTGGTC+TGG + tig0022126:12805-12824 None:intergenic 50.0%
CTGCTGGATGACGAGAAGAA+AGG - tig0022126:12964-12983 Msa1397050:intron 50.0%
GATGTGTGGCGAGACTTGAT+GGG - tig0022126:13537-13556 Msa1397050:intron 50.0%
CTTGTTAACTGGCGTGCCTT+TGG - tig0022126:13585-13604 Msa1397050:intron 50.0%
TCTAATGGTCACGGCCTCAC+AGG - tig0022126:11621-11640 Msa1397050:intron 55.0%
TTTCCGACTGAACTCCCTGC+AGG - tig0022126:11802-11821 Msa1397050:intron 55.0%
GCGCGTCAAACAAACCTGCA+GGG + tig0022126:11819-11838 None:intergenic 55.0%
TGCGCGTCAAACAAACCTGC+AGG + tig0022126:11820-11839 None:intergenic 55.0%
GCCCATAAATCGATCGAGGG+AGG + tig0022126:11977-11996 None:intergenic 55.0%
!! CAGCTGTTGGCTGACTTGAC+TGG - tig0022126:13081-13100 Msa1397050:intron 55.0%
AGCACAACATTCTGCTCGCG+TGG + tig0022126:13516-13535 None:intergenic 55.0%
ACGCGAGCAGAATGTTGTGC+TGG - tig0022126:13515-13534 Msa1397050:intron 55.0%
GGATGTGTGGCGAGACTTGA+TGG - tig0022126:13536-13555 Msa1397050:intron 55.0%
CGTCGTCCGTGAAGTGGAAA+GGG + tig0022126:13692-13711 None:intergenic 55.0%
CCTTTCCACTTCACGGACGA+CGG - tig0022126:13690-13709 Msa1397050:CDS 55.0%
ACGGCTGTTGCAAGCGAGTA+CGG - tig0022126:13709-13728 Msa1397050:CDS 55.0%
TTCCACGACGTGCACCTGTG+AGG + tig0022126:11638-11657 None:intergenic 60.0%
CCGTCGTCCGTGAAGTGGAA+AGG + tig0022126:13693-13712 None:intergenic 60.0%
AACAGCCGTCGTCCGTGAAG+TGG + tig0022126:13698-13717 None:intergenic 60.0%
GGCCTCACAGGTGCACGTCG+TGG - tig0022126:11633-11652 Msa1397050:intron 70.0%
Chromosome Type Strat End Strand Name
tig0022126 gene 10778 14191 10778 ID=Msa1397050;Name=Msa1397050
tig0022126 mRNA 10778 14191 10778 ID=Msa1397050-mRNA-1;Parent=Msa1397050;Name=Msa1397050-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|1|0.8|1|0.75|0.6|5|304|389
tig0022126 exon 10778 10948 10778 ID=Msa1397050-mRNA-1:exon:15884;Parent=Msa1397050-mRNA-1
tig0022126 exon 10975 11317 10975 ID=Msa1397050-mRNA-1:exon:15883;Parent=Msa1397050-mRNA-1
tig0022126 exon 11970 12265 11970 ID=Msa1397050-mRNA-1:exon:15882;Parent=Msa1397050-mRNA-1
tig0022126 exon 12383 12541 12383 ID=Msa1397050-mRNA-1:exon:15881;Parent=Msa1397050-mRNA-1
tig0022126 exon 13687 14191 13687 ID=Msa1397050-mRNA-1:exon:15880;Parent=Msa1397050-mRNA-1
tig0022126 CDS 13687 14191 13687 ID=Msa1397050-mRNA-1:cds;Parent=Msa1397050-mRNA-1
tig0022126 CDS 12383 12541 12383 ID=Msa1397050-mRNA-1:cds;Parent=Msa1397050-mRNA-1
tig0022126 CDS 11970 12265 11970 ID=Msa1397050-mRNA-1:cds;Parent=Msa1397050-mRNA-1
tig0022126 CDS 11108 11317 11108 ID=Msa1397050-mRNA-1:cds;Parent=Msa1397050-mRNA-1
tig0022126 three_prime_UTR 10975 11107 10975 ID=Msa1397050-mRNA-1:three_prime_utr;Parent=Msa1397050-mRNA-1
tig0022126 three_prime_UTR 10778 10948 10778 ID=Msa1397050-mRNA-1:three_prime_utr;Parent=Msa1397050-mRNA-1
Gene Sequence

>Msa1397050

ATGTCGAATTCACCAGAATCAGAATCGAAGTTTGTAACTGATTTGATTTTATTAGCGGCGAGCGCGGCATTCAGTTGCTTAATATTGTACACCGGTTATTCATATCTTGACCCGAACCGTCAATCATCCAAGAAAGCTCTTGAACACAAGAAAGCAATTGCAAATCGTCTTGGTCGTCCCCTCATTAAAACAAACCAATACGAAGATGTAATAGCTGGTGATGTTATAAATCCTGACCACATCGATGTTGAATTCGACAGTATTGGAGGATTGGAAACTATTAAAGAAGCTTTGTTTGAGCTTGTTATTCTTCCTTTGAAACGATCAGAATTGTTTGCCCATGGGAAATTATTGGGTCCTCAAAAGGGTGTCTTGTTGTATGGACCACCTGGTACTGGCAAAACCATGCTTGCTAAAGCTATTGCTAAGGAGTGTGGAGCGGCTTTCATTAATGTTAGGATGTCCAATCTCATGAGTATGTGGTTCGGCGATGCAACTAAGCTTGTGTCTGCCATATTTAGCTTGGCTTATAAGCTTCAGCCTGCTATCATATTCATTGATGAAGTAGACAGTTTTTTGGGTCAACGTCGTTCATCAGAACACGAGGCTTCGCTAAATATGAAAACTGAGTTCATGGCTCTATGGGATGGGTTCAGCACCGACCAGAATGCTCGAGTTATGGTACTTGCAGCAACTAATCGCCCTTCAGAACTTGATGAAGCAATACTTCGGCGTTTTCCTCAAGCCTTTGAAGTTGGAATTCCAGACCAGAAAGAGAGGGTTGAGATATTGAAGGTTATCTTAAAGGGCGAGAGGGTTGAAGATAACATAGACTTCAATTATATAGCTGGTTTATGCAAGGGTTACACAGGTTCAGATCTATTTGATCTTTGCAAGAAGGCTGCATATTTTCCTATTAGAGAACTGCTGGATGACGAGAAGAAAGGGAAACAATCTCAAGAACCTAGACCTTTGTCGCAGTTTGATTTAGAGAATGCCCTTTCCACTTCACGGACGACGGCTGTTGCAAGCGAGTACGGCGTGTCATCATCAAGACGAACGTTTTCTGGTGAGTCAGTTGATTATCAGGGTCAAGCTGCAATCAATGAATTCTCTAAGCTTATGGTTTCTTATATGCTTAACCTCCAACAAGATTCCCAGGATTCTTAA

Protein sequence

>Msa1397050

MSNSPESESKFVTDLILLAASAAFSCLILYTGYSYLDPNRQSSKKALEHKKAIANRLGRPLIKTNQYEDVIAGDVINPDHIDVEFDSIGGLETIKEALFELVILPLKRSELFAHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKECGAAFINVRMSNLMSMWFGDATKLVSAIFSLAYKLQPAIIFIDEVDSFLGQRRSSEHEASLNMKTEFMALWDGFSTDQNARVMVLAATNRPSELDEAILRRFPQAFEVGIPDQKERVEILKVILKGERVEDNIDFNYIAGLCKGYTGSDLFDLCKKAAYFPIRELLDDEKKGKQSQEPRPLSQFDLENALSTSRTTAVASEYGVSSSRRTFSGESVDYQGQAAINEFSKLMVSYMLNLQQDSQDS*