AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0669220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0669220 MtrunA17_Chr4g0008441 94.658 468 19 1 1 468 1 462 0.0 907
Msa0669220 MtrunA17_Chr5g0419371 44.332 397 190 6 81 463 181 560 7.74e-112 342
Msa0669220 MtrunA17_Chr2g0329451 33.967 368 194 6 92 458 7 326 3.09e-56 189
Msa0669220 MtrunA17_Chr5g0434971 33.889 360 192 5 98 457 66 379 1.61e-53 184
Msa0669220 MtrunA17_Chr4g0033631 32.880 368 198 7 92 458 8 327 4.31e-52 179
Msa0669220 MtrunA17_Chr1g0188291 32.687 361 196 5 98 458 7 320 9.27e-52 177
Msa0669220 MtrunA17_Chr1g0204101 31.165 369 209 6 87 455 11 334 1.99e-47 166
Msa0669220 MtrunA17_Chr6g0474331 31.335 367 206 7 99 464 28 349 4.31e-47 166
Msa0669220 MtrunA17_Chr1g0171921 29.841 315 188 5 141 452 206 490 2.08e-32 129
Msa0669220 MtrunA17_Chr1g0183661 27.077 325 192 9 137 460 12 292 6.09e-27 110
Msa0669220 MtrunA17_Chr1g0183241 28.428 299 182 5 157 455 134 400 7.38e-26 108
Msa0669220 MtrunA17_Chr1g0177771 27.564 312 186 5 141 452 276 547 1.83e-25 109
Msa0669220 MtrunA17_Chr1g0177321 27.885 312 176 6 141 452 202 464 2.38e-23 102
Msa0669220 MtrunA17_Chr7g0246421 30.594 219 120 3 238 455 2 189 2.93e-23 97.1
Msa0669220 MtrunA17_Chr7g0246411 30.822 146 86 3 98 242 40 171 5.91e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0669220 AT3G54090.1 67.653 473 135 5 10 468 3 471 0.0 674
Msa0669220 AT1G69200.1 43.490 361 191 3 90 450 197 544 2.62e-102 318
Msa0669220 AT3G59480.1 33.609 363 188 5 99 458 10 322 1.12e-56 191
Msa0669220 AT2G31390.1 32.249 369 197 5 96 461 6 324 1.77e-56 190
Msa0669220 AT1G06030.1 34.146 369 195 7 95 462 7 328 3.47e-54 184
Msa0669220 AT1G06020.1 33.242 364 195 6 99 461 10 326 4.34e-54 185
Msa0669220 AT1G66430.1 31.206 423 221 9 36 456 22 376 2.33e-53 184
Msa0669220 AT4G10260.1 32.687 361 196 5 98 458 5 318 1.70e-48 169
Msa0669220 AT5G51830.2 31.868 364 203 6 95 458 19 337 3.76e-48 169
Msa0669220 AT5G51830.1 31.868 364 203 6 95 458 19 337 3.76e-48 169

Find 143 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCATTCTGTGTATATATC+TGG 0.195178 4_4:-10768085 None:intergenic
TTTATTTATGAATCCTTTAT+AGG 0.211478 4_4:+10771161 Msa0669220:three_prime_UTR
ATCCAAACCAGGTAATAAAA+TGG 0.214183 4_4:-10767614 None:intergenic
GTTTGGGGAGGAGATGGTTT+TGG 0.244152 4_4:+10768231 Msa0669220:CDS
GGCGGACGGGCGGCTTTGTT+GGG 0.248265 4_4:+10768190 Msa0669220:CDS
CGGCTTTGTTGGGGAAAGTT+GGG 0.250094 4_4:+10768200 Msa0669220:CDS
GTAATACTCTTGACGATTCT+TGG 0.268512 4_4:-10770686 None:intergenic
GTTTGAAGACCAAGATGTTT+TGG 0.272200 4_4:+10770930 Msa0669220:CDS
CACAAGGCCGCCAAACTTCT+TGG 0.273975 4_4:-10770470 None:intergenic
AAAGTTGGGGAAGATGAGTT+TGG 0.286600 4_4:+10768214 Msa0669220:CDS
GGGCGGACGGGCGGCTTTGT+TGG 0.290741 4_4:+10768189 Msa0669220:CDS
GTTTCTGTTGTGGAAGCTTT+AGG 0.294571 4_4:-10767857 None:intergenic
AACAGAGTTGATTCCATAGA+AGG 0.303709 4_4:-10770430 None:intergenic
GAGGAAGAAGGAGAAGATTA+TGG 0.320107 4_4:-10767742 None:intergenic
AGTTCTAACATCCCCTTCTA+TGG 0.340037 4_4:+10770417 Msa0669220:CDS
TGGACTATTGGTGGAGTTAG+AGG 0.347631 4_4:+10770997 Msa0669220:CDS
GCGGCTTTGTTGGGGAAAGT+TGG 0.356462 4_4:+10768199 Msa0669220:CDS
CTTGGTTTGTTCGTAATCTT+CGG 0.358233 4_4:-10770668 None:intergenic
TTAGAACTTCTGAATTGAAA+TGG 0.361898 4_4:-10770402 None:intergenic
AAGTTGGGGAAGATGAGTTT+GGG 0.364967 4_4:+10768215 Msa0669220:CDS
TTGTTCCATCGGTCACAAAA+AGG 0.367248 4_4:-10770759 None:intergenic
CCCGTCCGCCCAACCGCACA+TGG 0.369710 4_4:-10768177 None:intergenic
TGAAGTTTGATTCGGGGTTA+AGG 0.369918 4_4:+10768287 Msa0669220:CDS
CCACCATTAGTATGTTGTTT+CGG 0.372180 4_4:+10768007 Msa0669220:CDS
ACCAGGTGCTCTCGCGAACT+CGG 0.372938 4_4:-10768128 None:intergenic
AGTGATAGTTTCATCTCAAA+TGG 0.376822 4_4:+10771184 Msa0669220:three_prime_UTR
CCAGTTCTATCGCAAGTATA+AGG 0.379857 4_4:-10770850 None:intergenic
TGAAACTATCACTCCTATAA+AGG 0.381647 4_4:-10771174 None:intergenic
AGAGGGGTGAAGTTTGATTC+GGG 0.383749 4_4:+10768280 Msa0669220:CDS
CGTAATGTTCTTCGTCTAGA+AGG 0.383934 4_4:-10770612 None:intergenic
CAAAATGCTATGGAGTTGTT+GGG 0.384489 4_4:-10767655 None:intergenic
ATTATATCGCAATGGACTAT+TGG 0.392117 4_4:+10770985 Msa0669220:CDS
CCGAGGAAATCTCGCCTTTG+TGG 0.396249 4_4:+10770719 Msa0669220:CDS
CACAACAAAAGAACAAGAAC+AGG 0.403051 4_4:+10767934 Msa0669220:CDS
CCCATGTGCGGTTGGGCGGA+CGG 0.403556 4_4:+10768176 Msa0669220:CDS
CCATGTGCGGTTGGGCGGAC+GGG 0.406444 4_4:+10768177 Msa0669220:CDS
CAGATTCTGAGTAGCACTTT+CGG 0.411608 4_4:-10771028 None:intergenic
GCGGACGGGCGGCTTTGTTG+GGG 0.411905 4_4:+10768191 Msa0669220:CDS
ACAAAATGCTATGGAGTTGT+TGG 0.417579 4_4:-10767656 None:intergenic
AGATGAGTTTGGGGAGGAGA+TGG 0.422134 4_4:+10768225 Msa0669220:CDS
ATAAAGTGGTCCAAGAAGTT+TGG 0.422946 4_4:+10770460 Msa0669220:CDS
AGTCCATTGCGATATAATTC+CGG 0.424032 4_4:-10770980 None:intergenic
TAGAGGGGTGAAGTTTGATT+CGG 0.426457 4_4:+10768279 Msa0669220:CDS
TGGGCCACCGCCACATTTGA+CGG 0.429844 4_4:-10768157 None:intergenic
GGCTTTGTTGGGGAAAGTTG+GGG 0.436289 4_4:+10768201 Msa0669220:CDS
GGCGGTGGCCCATGTGCGGT+TGG 0.443155 4_4:+10768168 Msa0669220:CDS
GAAGGAGAAGATTATGGTGA+TGG 0.451108 4_4:-10767736 None:intergenic
TTGTTGTGTTTAATTTAGAA+AGG 0.451290 4_4:-10767811 None:intergenic
GTTTGATGATGATGGGAAGA+TGG 0.455703 4_4:+10768336 Msa0669220:CDS
GATGGGAATGGAGATTGTTA+AGG 0.456439 4_4:+10768354 Msa0669220:CDS
TCCAAACCAGGTAATAAAAT+GGG 0.457837 4_4:-10767613 None:intergenic
TTGATTCGGGGTTAAGGACT+GGG 0.458242 4_4:+10768293 Msa0669220:CDS
CGTGATCTCCACAGAGGTAA+TGG 0.461462 4_4:-10770511 None:intergenic
ACTAATGGTGGGTCATCGTA+TGG 0.461800 4_4:-10767995 None:intergenic
TGTGTATATATCTGGGTCCA+TGG 0.465474 4_4:-10768077 None:intergenic
GCTCCGAAACAACATACTAA+TGG 0.466171 4_4:-10768010 None:intergenic
TCCATTCTGTGTATATATCT+GGG 0.467221 4_4:-10768084 None:intergenic
CCCGAGTTCGCGAGAGCACC+TGG 0.469563 4_4:+10768127 Msa0669220:CDS
TTTGATTCGGGGTTAAGGAC+TGG 0.471872 4_4:+10768292 Msa0669220:CDS
ACATTTGACGGTGGCCCACC+AGG 0.475102 4_4:-10768145 None:intergenic
CCTTATACTTGCGATAGAAC+TGG 0.478733 4_4:+10770850 Msa0669220:CDS
TATACAGAACTTGTTTAACT+TGG 0.481651 4_4:+10771234 Msa0669220:three_prime_UTR
GCGGTGGCCCATGTGCGGTT+GGG 0.482275 4_4:+10768169 Msa0669220:CDS
TGGCTCTGGTGATGCTATTG+TGG 0.484324 4_4:+10770870 Msa0669220:CDS
ACCACAACCCCGTCAAAAGA+AGG 0.492807 4_4:-10770802 None:intergenic
ATCTCGCCTTTGTGGCATGA+TGG 0.501857 4_4:+10770727 Msa0669220:CDS
GAGAGTGAAAGAGAGGAAGA+AGG 0.503303 4_4:-10767754 None:intergenic
TTTGATGATGATGGGAAGAT+GGG 0.504831 4_4:+10768337 Msa0669220:CDS
TCTCCCTACAGTGCGTGTGC+AGG 0.507788 4_4:+10768048 Msa0669220:CDS
CTACGTTTCGCTATTGCAGC+CGG 0.509386 4_4:+10770961 Msa0669220:CDS
TATGGGTTTGGATTAATGGA+AGG 0.510517 4_4:-10767693 None:intergenic
TTGGGATTGTGTTTCTGTTG+TGG 0.512671 4_4:-10767867 None:intergenic
TGTTGTGTTTAATTTAGAAA+GGG 0.513543 4_4:-10767810 None:intergenic
AGGAGAAGGTGCAGACTAGA+GGG 0.514816 4_4:+10768263 Msa0669220:CDS
CCAGGTGCTCTCGCGAACTC+GGG 0.517562 4_4:-10768127 None:intergenic
AGATTTCCTCGGCAGTGTAA+TGG 0.518791 4_4:-10770708 None:intergenic
ATGGGTTTGGATTAATGGAA+GGG 0.522357 4_4:-10767692 None:intergenic
GTGATAGTTTCATCTCAAAT+GGG 0.525924 4_4:+10771185 Msa0669220:three_prime_UTR
TGAAGTTTCAAGAACCGAGC+TGG 0.526021 4_4:+10770585 Msa0669220:CDS
CTCTGTTCAAAGCAATAAAG+TGG 0.530790 4_4:+10770446 Msa0669220:CDS
TAATCTTCGGCATAGTATTG+TGG 0.532869 4_4:-10770655 None:intergenic
GTGGCCCATGTGCGGTTGGG+CGG 0.533577 4_4:+10768172 Msa0669220:CDS
GTGAATTCTAATTGTTCCAT+CGG 0.536542 4_4:-10770770 None:intergenic
GCCACCGTCAAATGTGGCGG+TGG 0.536888 4_4:+10768153 Msa0669220:CDS
GCTGTCTCTCCAAAACATCT+TGG 0.538601 4_4:-10770939 None:intergenic
TCATAAGAAACAAAATGCTA+TGG 0.538754 4_4:-10767665 None:intergenic
GACTGGGTGTAGTTATATGA+AGG 0.541448 4_4:+10768309 Msa0669220:CDS
CCGAAACAACATACTAATGG+TGG 0.545986 4_4:-10768007 None:intergenic
TTCAAACATTTCTCGACAAG+TGG 0.547137 4_4:-10770914 None:intergenic
ATCACTCTTAAGAGAATCCT+CGG 0.547228 4_4:-10768383 None:intergenic
TGTGCGGTTGGGCGGACGGG+CGG 0.550810 4_4:+10768180 Msa0669220:CDS
AATTTAGAAAGGGTTGTTTG+AGG 0.551532 4_4:-10767800 None:intergenic
CCACAACCCCGTCAAAAGAA+GGG 0.552175 4_4:-10770801 None:intergenic
GGTGCTCTCGCGAACTCGGG+TGG 0.556368 4_4:-10768124 None:intergenic
ACCCAGATATATACACAGAA+TGG 0.556834 4_4:+10768083 Msa0669220:CDS
AAGGTGAAGTTTGATGATGA+TGG 0.557714 4_4:+10768328 Msa0669220:CDS
TGGTGGGCCACCGTCAAATG+TGG 0.558669 4_4:+10768147 Msa0669220:CDS
ACAGAGTTGATTCCATAGAA+GGG 0.559311 4_4:-10770429 None:intergenic
ATATCGCAATGGACTATTGG+TGG 0.560224 4_4:+10770988 Msa0669220:CDS
TTGTTTCGGAGCAGCACAGA+GGG 0.563579 4_4:+10768021 Msa0669220:CDS
GTCTAGAAGGAATTCCAGCT+CGG 0.563796 4_4:-10770599 None:intergenic
AAAATGCTATGGAGTTGTTG+GGG 0.565621 4_4:-10767654 None:intergenic
AACTCCTGCACACGCACTGT+AGG 0.569065 4_4:-10768052 None:intergenic
AAGTGGTCCAAGAAGTTTGG+CGG 0.570685 4_4:+10770463 Msa0669220:CDS
GTGTATATATCTGGGTCCAT+GGG 0.573279 4_4:-10768076 None:intergenic
ACTCCTGCACACGCACTGTA+GGG 0.575997 4_4:-10768051 None:intergenic
AGGTGAAGTTTGATGATGAT+GGG 0.578660 4_4:+10768329 Msa0669220:CDS
ACTTGCGATAGAACTGGCTC+TGG 0.580431 4_4:+10770856 Msa0669220:CDS
TGGGGAAGATGAGTTTGGGG+AGG 0.581376 4_4:+10768219 Msa0669220:CDS
AAGGAGAAGGTGCAGACTAG+AGG 0.583488 4_4:+10768262 Msa0669220:CDS
CCACAAAGGCGAGATTTCCT+CGG 0.586298 4_4:-10770719 None:intergenic
TGATGATGGGAAGATGGGAA+TGG 0.588741 4_4:+10768342 Msa0669220:CDS
CTAATGGTGGGTCATCGTAT+GGG 0.590918 4_4:-10767994 None:intergenic
AATATTTATCACCACATGGA+AGG 0.592799 4_4:-10771069 None:intergenic
TTTGGGGATGAATAAGGAGA+AGG 0.593535 4_4:+10768249 Msa0669220:CDS
GCGTGTGCAGGAGTTTCCCA+TGG 0.594270 4_4:+10768060 Msa0669220:CDS
ATGGTGATGGAGAATTGAGG+AGG 0.599588 4_4:-10767723 None:intergenic
GAGGGGTGAAGTTTGATTCG+GGG 0.602436 4_4:+10768281 Msa0669220:CDS
ATTATGGTGATGGAGAATTG+AGG 0.608638 4_4:-10767726 None:intergenic
CCGTCCGCCCAACCGCACAT+GGG 0.610608 4_4:-10768176 None:intergenic
CAGAGTTGATTCCATAGAAG+GGG 0.614146 4_4:-10770428 None:intergenic
CACAACCCCGTCAAAAGAAG+GGG 0.616084 4_4:-10770800 None:intergenic
CAGCCGGAATTATATCGCAA+TGG 0.626399 4_4:+10770977 Msa0669220:CDS
ATGTGGCGGTGGCCCATGTG+CGG 0.629189 4_4:+10768164 Msa0669220:CDS
TGGGCCACCGTCAAATGTGG+CGG 0.639663 4_4:+10768150 Msa0669220:CDS
CGAAACAACATACTAATGGT+GGG 0.640061 4_4:-10768006 None:intergenic
CAGAATGGAAGATGTTACAA+TGG 0.641345 4_4:+10768098 Msa0669220:CDS
TTCTGAGTAGCACTTTCGGT+AGG 0.642730 4_4:-10771024 None:intergenic
GATTGTTAAGGAATGTGCCG+AGG 0.650764 4_4:+10768366 Msa0669220:CDS
AGTTCGCGAGAGCACCTGGT+GGG 0.653909 4_4:+10768131 Msa0669220:CDS
GTATTACCATTACACTGCCG+AGG 0.655331 4_4:+10770702 Msa0669220:CDS
AGTTGGGGAAGATGAGTTTG+GGG 0.660506 4_4:+10768216 Msa0669220:CDS
GCCACCGCCACATTTGACGG+TGG 0.667423 4_4:-10768154 None:intergenic
GAGTTCGCGAGAGCACCTGG+TGG 0.672293 4_4:+10768130 Msa0669220:CDS
GGAGAAGGTGCAGACTAGAG+GGG 0.677795 4_4:+10768264 Msa0669220:CDS
TTAAGTCCATCATGCCACAA+AGG 0.677817 4_4:-10770733 None:intergenic
TAAACTTGCCATTACCTCTG+TGG 0.687258 4_4:+10770503 Msa0669220:CDS
GAATTCGAAGATTACGACGA+CGG 0.689580 4_4:+10767962 Msa0669220:CDS
AAACAATATTTATCACCACA+TGG 0.690885 4_4:-10771073 None:intergenic
AAGTTTATGTACCTTCCATG+TGG 0.693025 4_4:+10771058 Msa0669220:CDS
TAGACGAAGAACATTACGAG+AGG 0.701140 4_4:+10770617 Msa0669220:CDS
GTTGTTTCGGAGCAGCACAG+AGG 0.736871 4_4:+10768020 Msa0669220:CDS
TCATCGCGTGATCTCCACAG+AGG 0.761083 4_4:-10770517 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATAGTTTTTTTTTCTTTA+CGG + chr4_4:10770284-10770303 Msa0669220:intron 10.0%
!! AAAAAATAAACAACTATAAG+TGG - chr4_4:10768483-10768502 None:intergenic 15.0%
!!! TGTCATTTGATTTATATTTT+AGG + chr4_4:10769059-10769078 Msa0669220:intron 15.0%
!! ATATGCTTATATATCATATA+AGG - chr4_4:10769086-10769105 None:intergenic 15.0%
!! TTAACATTATTAACATATCT+TGG + chr4_4:10769144-10769163 Msa0669220:intron 15.0%
!! TGGTATAATATTAATAACAT+TGG + chr4_4:10769314-10769333 Msa0669220:intron 15.0%
!! TTTATTTATGAATCCTTTAT+AGG + chr4_4:10771161-10771180 Msa0669220:three_prime_UTR 15.0%
!!! TGTTGTGTTTAATTTAGAAA+GGG - chr4_4:10767813-10767832 None:intergenic 20.0%
!!! TTGTTGTGTTTAATTTAGAA+AGG - chr4_4:10767814-10767833 None:intergenic 20.0%
!! TAACAAATCGCAATTTAAAA+TGG - chr4_4:10768926-10768945 None:intergenic 20.0%
!!! ACTTTTCAATTTTACTTTGA+AGG + chr4_4:10769470-10769489 Msa0669220:intron 20.0%
!!! TTTCAATGTTTTTATTTCGA+AGG + chr4_4:10769796-10769815 Msa0669220:intron 20.0%
!!! GTGTCAATAAAATCAATTTT+GGG - chr4_4:10770195-10770214 None:intergenic 20.0%
!!! AGTGTCAATAAAATCAATTT+TGG - chr4_4:10770196-10770215 None:intergenic 20.0%
!! GAGAAATAATTAAAAAAGCA+TGG + chr4_4:10770545-10770564 Msa0669220:CDS 20.0%
!!! TACTATTCAAAAGTTGTTTT+TGG - chr4_4:10771275-10771294 None:intergenic 20.0%
!!! AAAAACAACTTTTGAATAGT+AGG + chr4_4:10771274-10771293 Msa0669220:three_prime_UTR 20.0%
! TCATAAGAAACAAAATGCTA+TGG - chr4_4:10767668-10767687 None:intergenic 25.0%
!! TTTTTATGGGTTTGGATTAA+TGG - chr4_4:10767700-10767719 None:intergenic 25.0%
!!! AGTTTTTATATGTCGTTTTG+AGG - chr4_4:10767837-10767856 None:intergenic 25.0%
! TACCATCATAAAATTTAGGT+TGG - chr4_4:10768620-10768639 None:intergenic 25.0%
! AGACTACCATCATAAAATTT+AGG - chr4_4:10768624-10768643 None:intergenic 25.0%
! TCATAAAATGTGTTTAGAAG+TGG + chr4_4:10768753-10768772 Msa0669220:intron 25.0%
! CATAAAATGTGTTTAGAAGT+GGG + chr4_4:10768754-10768773 Msa0669220:intron 25.0%
!!! CAGGCTTTATCAATATTTTA+CGG + chr4_4:10768817-10768836 Msa0669220:intron 25.0%
!! TATCAATATTTTACGGTATG+CGG + chr4_4:10768824-10768843 Msa0669220:intron 25.0%
! TCAAAAATAGATACACTCTA+GGG - chr4_4:10768895-10768914 None:intergenic 25.0%
! TAAATCAAATGACAAGAAAG+TGG - chr4_4:10769053-10769072 None:intergenic 25.0%
! TTGGTATTCGTAATGAAATT+TGG + chr4_4:10769163-10769182 Msa0669220:intron 25.0%
! TGGTTAATGATTTCGAAAAT+TGG + chr4_4:10769183-10769202 Msa0669220:intron 25.0%
! TGTGATTCACAATTTGTATA+TGG + chr4_4:10769209-10769228 Msa0669220:intron 25.0%
!! TACTTTGTTTCCATGTTATT+TGG + chr4_4:10769263-10769282 Msa0669220:intron 25.0%
!! ACTTTGTTTCCATGTTATTT+GGG + chr4_4:10769264-10769283 Msa0669220:intron 25.0%
!! ATTAATAACATTGGTAGCAA+TGG + chr4_4:10769323-10769342 Msa0669220:intron 25.0%
!!! TAACCAAAACTTTTTCTGTT+AGG + chr4_4:10769607-10769626 Msa0669220:intron 25.0%
!! TAACCTAACAGAAAAAGTTT+TGG - chr4_4:10769613-10769632 None:intergenic 25.0%
!! TTGTTAATGTAAGAGTATGA+TGG + chr4_4:10769667-10769686 Msa0669220:intron 25.0%
! TAAGTTAAAATTGCGTTTGA+AGG + chr4_4:10769760-10769779 Msa0669220:intron 25.0%
! AAGTTAAAATTGCGTTTGAA+GGG + chr4_4:10769761-10769780 Msa0669220:intron 25.0%
!! TGATTTTTGCAGAATACTAA+TGG - chr4_4:10769935-10769954 None:intergenic 25.0%
! AAAAATCATATAGTCACTTG+AGG + chr4_4:10769947-10769966 Msa0669220:intron 25.0%
!! TGATATTTTATGACGTCAAA+TGG + chr4_4:10770028-10770047 Msa0669220:intron 25.0%
!!! CAATAAAATCAATTTTGGGA+TGG - chr4_4:10770191-10770210 None:intergenic 25.0%
!!! TACTAGTTTGTTAATGTATG+AGG + chr4_4:10770307-10770326 Msa0669220:intron 25.0%
! TTAGAACTTCTGAATTGAAA+TGG - chr4_4:10770405-10770424 None:intergenic 25.0%
!! AATAATTAAAAAAGCATGGC+AGG + chr4_4:10770549-10770568 Msa0669220:CDS 25.0%
! AAACAATATTTATCACCACA+TGG - chr4_4:10771076-10771095 None:intergenic 25.0%
!! TATACAGAACTTGTTTAACT+TGG + chr4_4:10771234-10771253 Msa0669220:three_prime_UTR 25.0%
TCCAAACCAGGTAATAAAAT+GGG - chr4_4:10767616-10767635 None:intergenic 30.0%
ATCCAAACCAGGTAATAAAA+TGG - chr4_4:10767617-10767636 None:intergenic 30.0%
! AATTTTGTGTTATCCAAACC+AGG - chr4_4:10767628-10767647 None:intergenic 30.0%
! ATTGAGGAGGACATTTTTAT+GGG - chr4_4:10767713-10767732 None:intergenic 30.0%
! AATTGAGGAGGACATTTTTA+TGG - chr4_4:10767714-10767733 None:intergenic 30.0%
!!! TTTTGAAGTGAGGTTGTTTT+TGG - chr4_4:10767779-10767798 None:intergenic 30.0%
AATTTAGAAAGGGTTGTTTG+AGG - chr4_4:10767803-10767822 None:intergenic 30.0%
!!! TTTTTTGTTGCGTCGTTTTA+AGG - chr4_4:10767894-10767913 None:intergenic 30.0%
TCCATTCTGTGTATATATCT+GGG - chr4_4:10768087-10768106 None:intergenic 30.0%
TTCCATTCTGTGTATATATC+TGG - chr4_4:10768088-10768107 None:intergenic 30.0%
!!! GAATCTTTCTGTTTTGAAAG+AGG + chr4_4:10768411-10768430 Msa0669220:CDS 30.0%
!!! GTCGTAAAATTGGTTTTGTA+GGG + chr4_4:10768583-10768602 Msa0669220:intron 30.0%
! GTCCAACCTAAATTTTATGA+TGG + chr4_4:10768615-10768634 Msa0669220:intron 30.0%
TAAGAGTTTCACATTAGATG+AGG + chr4_4:10768725-10768744 Msa0669220:intron 30.0%
GTCAAAAATAGATACACTCT+AGG - chr4_4:10768896-10768915 None:intergenic 30.0%
ATGGTTCATTAGAATGAAAC+GGG - chr4_4:10768977-10768996 None:intergenic 30.0%
GATGGTTCATTAGAATGAAA+CGG - chr4_4:10768978-10768997 None:intergenic 30.0%
! GAAGCTTTTTATGTTAGGTT+AGG + chr4_4:10769291-10769310 Msa0669220:intron 30.0%
!! CGAAAGTTTGTTAATGTATG+AGG + chr4_4:10769346-10769365 Msa0669220:intron 30.0%
TTGTTAATGTATGAGGAAGA+TGG + chr4_4:10769353-10769372 Msa0669220:intron 30.0%
TATTCGGTTAAAATCGAGTT+TGG + chr4_4:10769442-10769461 Msa0669220:intron 30.0%
CAATACTTCTAGTCAAATTG+AGG + chr4_4:10769550-10769569 Msa0669220:intron 30.0%
GAAGCAAATTTGTGTGTTAA+AGG + chr4_4:10769584-10769603 Msa0669220:intron 30.0%
TATACTGACATTGGTAGAAA+TGG + chr4_4:10769637-10769656 Msa0669220:intron 30.0%
! ATGATGGTTTTTCCTTTGTT+AGG + chr4_4:10769683-10769702 Msa0669220:intron 30.0%
! TGATGGTTTTTCCTTTGTTA+GGG + chr4_4:10769684-10769703 Msa0669220:intron 30.0%
!!! ATTTTTTCCATCCAACGTTA+GGG + chr4_4:10769844-10769863 Msa0669220:intron 30.0%
!!! GAGGAAATTTTTTGTGTGAA+AGG + chr4_4:10769902-10769921 Msa0669220:intron 30.0%
GATTCTGATACATTACATTG+TGG + chr4_4:10769977-10769996 Msa0669220:intron 30.0%
!!! GACGTCAAATGGTTTTTTTA+TGG + chr4_4:10770039-10770058 Msa0669220:intron 30.0%
! TTTATGGATTGTGACTGATA+TGG + chr4_4:10770055-10770074 Msa0669220:intron 30.0%
! ATATGGTTTGCAAGATAAGT+TGG + chr4_4:10770072-10770091 Msa0669220:intron 30.0%
!!! TATTGACACTTTTGAAACCA+AGG + chr4_4:10770206-10770225 Msa0669220:intron 30.0%
GTGAATTCTAATTGTTCCAT+CGG - chr4_4:10770773-10770792 None:intergenic 30.0%
! TATTATACCCCTTCTTTTGA+CGG + chr4_4:10770793-10770812 Msa0669220:CDS 30.0%
!! ATTATATCGCAATGGACTAT+TGG + chr4_4:10770985-10771004 Msa0669220:CDS 30.0%
AATATTTATCACCACATGGA+AGG - chr4_4:10771072-10771091 None:intergenic 30.0%
TGAAACTATCACTCCTATAA+AGG - chr4_4:10771177-10771196 None:intergenic 30.0%
AGTGATAGTTTCATCTCAAA+TGG + chr4_4:10771184-10771203 Msa0669220:three_prime_UTR 30.0%
GTGATAGTTTCATCTCAAAT+GGG + chr4_4:10771185-10771204 Msa0669220:three_prime_UTR 30.0%
!!! TTGTTTTTGGTGACATGAAA+TGG - chr4_4:10771262-10771281 None:intergenic 30.0%
! AACAACTTTTGAATAGTAGG+TGG + chr4_4:10771277-10771296 Msa0669220:three_prime_UTR 30.0%
! ACCCATTTTATTACCTGGTT+TGG + chr4_4:10767612-10767631 Msa0669220:five_prime_UTR 35.0%
AAAATGCTATGGAGTTGTTG+GGG - chr4_4:10767657-10767676 None:intergenic 35.0%
CAAAATGCTATGGAGTTGTT+GGG - chr4_4:10767658-10767677 None:intergenic 35.0%
ACAAAATGCTATGGAGTTGT+TGG - chr4_4:10767659-10767678 None:intergenic 35.0%
ATGGGTTTGGATTAATGGAA+GGG - chr4_4:10767695-10767714 None:intergenic 35.0%
TATGGGTTTGGATTAATGGA+AGG - chr4_4:10767696-10767715 None:intergenic 35.0%
!! ATTATGGTGATGGAGAATTG+AGG - chr4_4:10767729-10767748 None:intergenic 35.0%
!!! TGTTTGAGGTTTTTGAAGTG+AGG - chr4_4:10767789-10767808 None:intergenic 35.0%
!!! TCTTTTGTTGTGTCGTTTTG+AGG - chr4_4:10767926-10767945 None:intergenic 35.0%
CACAACAAAAGAACAAGAAC+AGG + chr4_4:10767934-10767953 Msa0669220:CDS 35.0%
CGAAACAACATACTAATGGT+GGG - chr4_4:10768009-10768028 None:intergenic 35.0%
! CCACCATTAGTATGTTGTTT+CGG + chr4_4:10768007-10768026 Msa0669220:CDS 35.0%
ACCCAGATATATACACAGAA+TGG + chr4_4:10768083-10768102 Msa0669220:CDS 35.0%
CAGAATGGAAGATGTTACAA+TGG + chr4_4:10768098-10768117 Msa0669220:CDS 35.0%
!! AAGGTGAAGTTTGATGATGA+TGG + chr4_4:10768328-10768347 Msa0669220:CDS 35.0%
!! AGGTGAAGTTTGATGATGAT+GGG + chr4_4:10768329-10768348 Msa0669220:CDS 35.0%
!! TTTGATGATGATGGGAAGAT+GGG + chr4_4:10768337-10768356 Msa0669220:CDS 35.0%
ATCACTCTTAAGAGAATCCT+CGG - chr4_4:10768386-10768405 None:intergenic 35.0%
! CAAAACCAATTTTACGACGA+GGG - chr4_4:10768581-10768600 None:intergenic 35.0%
! ACAAAACCAATTTTACGACG+AGG - chr4_4:10768582-10768601 None:intergenic 35.0%
!!! CGTCGTAAAATTGGTTTTGT+AGG + chr4_4:10768582-10768601 Msa0669220:intron 35.0%
!!! TGGTTTTGTAGGGTTAAGTT+AGG + chr4_4:10768593-10768612 Msa0669220:intron 35.0%
TTAGTTGAGCTATCAGCTAT+TGG + chr4_4:10768652-10768671 Msa0669220:intron 35.0%
! TGTTTCCATGTTATTTGGGA+AGG + chr4_4:10769268-10769287 Msa0669220:intron 35.0%
! GTTTCCATGTTATTTGGGAA+GGG + chr4_4:10769269-10769288 Msa0669220:intron 35.0%
! GAAGGGAAGCTTTTTATGTT+AGG + chr4_4:10769286-10769305 Msa0669220:intron 35.0%
! GCTTTTTATGTTAGGTTAGG+TGG + chr4_4:10769294-10769313 Msa0669220:intron 35.0%
TCAAACATTCTCCCTAACAA+AGG - chr4_4:10769384-10769403 None:intergenic 35.0%
TCAAACATTCTCCCTAACAA+AGG - chr4_4:10769384-10769403 None:intergenic 35.0%
TTAAAATTGCGTTTGAAGGG+AGG + chr4_4:10769764-10769783 Msa0669220:intron 35.0%
!!! CATTTTTTCCATCCAACGTT+AGG + chr4_4:10769843-10769862 Msa0669220:intron 35.0%
ATGAAAAATAGCCCTAACGT+TGG - chr4_4:10769858-10769877 None:intergenic 35.0%
! TTTTGCAGAATACTAATGGC+TGG - chr4_4:10769931-10769950 None:intergenic 35.0%
TAAGTCACACATGTAGAGTT+TGG + chr4_4:10770129-10770148 Msa0669220:intron 35.0%
AAGTCACACATGTAGAGTTT+GGG + chr4_4:10770130-10770149 Msa0669220:intron 35.0%
!!! CATTTTGGGGTCAAAATAGT+TGG + chr4_4:10770235-10770254 Msa0669220:intron 35.0%
!!! TTTTTTATGTGTACCACTGC+AGG + chr4_4:10770369-10770388 Msa0669220:intron 35.0%
! ACAGAGTTGATTCCATAGAA+GGG - chr4_4:10770432-10770451 None:intergenic 35.0%
! AACAGAGTTGATTCCATAGA+AGG - chr4_4:10770433-10770452 None:intergenic 35.0%
CTCTGTTCAAAGCAATAAAG+TGG + chr4_4:10770446-10770465 Msa0669220:CDS 35.0%
ATAAAGTGGTCCAAGAAGTT+TGG + chr4_4:10770460-10770479 Msa0669220:CDS 35.0%
AGTTTACGTCGAAAAACACA+AGG - chr4_4:10770489-10770508 None:intergenic 35.0%
TAATCTTCGGCATAGTATTG+TGG - chr4_4:10770658-10770677 None:intergenic 35.0%
!! CTTGGTTTGTTCGTAATCTT+CGG - chr4_4:10770671-10770690 None:intergenic 35.0%
GTAATACTCTTGACGATTCT+TGG - chr4_4:10770689-10770708 None:intergenic 35.0%
! ATTATACCCCTTCTTTTGAC+GGG + chr4_4:10770794-10770813 Msa0669220:CDS 35.0%
TTCAAACATTTCTCGACAAG+TGG - chr4_4:10770917-10770936 None:intergenic 35.0%
! GTTTGAAGACCAAGATGTTT+TGG + chr4_4:10770930-10770949 Msa0669220:CDS 35.0%
AGTCCATTGCGATATAATTC+CGG - chr4_4:10770983-10771002 None:intergenic 35.0%
AAGTTTATGTACCTTCCATG+TGG + chr4_4:10771058-10771077 Msa0669220:CDS 35.0%
! AACTTTTGAATAGTAGGTGG+AGG + chr4_4:10771280-10771299 Msa0669220:three_prime_UTR 35.0%
! ACTTTTGAATAGTAGGTGGA+GGG + chr4_4:10771281-10771300 Msa0669220:three_prime_UTR 35.0%
! ACAGCACCCATTTTATTACC+TGG + chr4_4:10767607-10767626 Msa0669220:five_prime_UTR 40.0%
! GGAGGACATTTTTATGGGTT+TGG - chr4_4:10767708-10767727 None:intergenic 40.0%
GAAGGAGAAGATTATGGTGA+TGG - chr4_4:10767739-10767758 None:intergenic 40.0%
GAGGAAGAAGGAGAAGATTA+TGG - chr4_4:10767745-10767764 None:intergenic 40.0%
!! GTTTTTGGAGAGTGAAAGAG+AGG - chr4_4:10767764-10767783 None:intergenic 40.0%
GTTTCTGTTGTGGAAGCTTT+AGG - chr4_4:10767860-10767879 None:intergenic 40.0%
! TTGGGATTGTGTTTCTGTTG+TGG - chr4_4:10767870-10767889 None:intergenic 40.0%
!!! GTTGCGTCGTTTTAAGGTTT+GGG - chr4_4:10767888-10767907 None:intergenic 40.0%
!!! TGTTGCGTCGTTTTAAGGTT+TGG - chr4_4:10767889-10767908 None:intergenic 40.0%
GAATTCGAAGATTACGACGA+CGG + chr4_4:10767962-10767981 Msa0669220:CDS 40.0%
CCGAAACAACATACTAATGG+TGG - chr4_4:10768010-10768029 None:intergenic 40.0%
GCTCCGAAACAACATACTAA+TGG - chr4_4:10768013-10768032 None:intergenic 40.0%
GTGTATATATCTGGGTCCAT+GGG - chr4_4:10768079-10768098 None:intergenic 40.0%
TGTGTATATATCTGGGTCCA+TGG - chr4_4:10768080-10768099 None:intergenic 40.0%
AAAGTTGGGGAAGATGAGTT+TGG + chr4_4:10768214-10768233 Msa0669220:CDS 40.0%
AAGTTGGGGAAGATGAGTTT+GGG + chr4_4:10768215-10768234 Msa0669220:CDS 40.0%
!!! GATGGTTTTGGGGATGAATA+AGG + chr4_4:10768243-10768262 Msa0669220:CDS 40.0%
TTTGGGGATGAATAAGGAGA+AGG + chr4_4:10768249-10768268 Msa0669220:CDS 40.0%
TAGAGGGGTGAAGTTTGATT+CGG + chr4_4:10768279-10768298 Msa0669220:CDS 40.0%
!! TGAAGTTTGATTCGGGGTTA+AGG + chr4_4:10768287-10768306 Msa0669220:CDS 40.0%
GACTGGGTGTAGTTATATGA+AGG + chr4_4:10768309-10768328 Msa0669220:CDS 40.0%
!! GTTTGATGATGATGGGAAGA+TGG + chr4_4:10768336-10768355 Msa0669220:CDS 40.0%
GATGGGAATGGAGATTGTTA+AGG + chr4_4:10768354-10768373 Msa0669220:CDS 40.0%
GCTGATAGCTCAACTAATCA+TGG - chr4_4:10768649-10768668 None:intergenic 40.0%
TGACCTTTCTTGGTTGTGAT+AGG + chr4_4:10768696-10768715 Msa0669220:intron 40.0%
GACCTTTCTTGGTTGTGATA+GGG + chr4_4:10768697-10768716 Msa0669220:intron 40.0%
AACCCTATCACAACCAAGAA+AGG - chr4_4:10768702-10768721 None:intergenic 40.0%
! CTTAACAGGCAGATTTGGTA+GGG + chr4_4:10768788-10768807 Msa0669220:intron 40.0%
! AGATTTGGTAGGGTTAAGTC+AGG + chr4_4:10768798-10768817 Msa0669220:intron 40.0%
ACCATCACTCAAACTTAGTG+TGG + chr4_4:10768992-10769011 Msa0669220:intron 40.0%
ACCACACTAAGTTTGAGTGA+TGG - chr4_4:10768996-10769015 None:intergenic 40.0%
AAGATGGTTGTGCCTTTGTT+AGG + chr4_4:10769369-10769388 Msa0669220:intron 40.0%
AGATGGTTGTGCCTTTGTTA+GGG + chr4_4:10769370-10769389 Msa0669220:intron 40.0%
GGTTAGTGCTATACTGACAT+TGG + chr4_4:10769628-10769647 Msa0669220:intron 40.0%
AAAATAGCCCTAACGTTGGA+TGG - chr4_4:10769854-10769873 None:intergenic 40.0%
CATCACTTCACGTCAAATTG+AGG + chr4_4:10769875-10769894 Msa0669220:intron 40.0%
! AAACCAAGGTCACTGCATTT+TGG + chr4_4:10770220-10770239 Msa0669220:intron 40.0%
! AACCAAGGTCACTGCATTTT+GGG + chr4_4:10770221-10770240 Msa0669220:intron 40.0%
! AGTTCTAACATCCCCTTCTA+TGG + chr4_4:10770417-10770436 Msa0669220:CDS 40.0%
! CAGAGTTGATTCCATAGAAG+GGG - chr4_4:10770431-10770450 None:intergenic 40.0%
TAAACTTGCCATTACCTCTG+TGG + chr4_4:10770503-10770522 Msa0669220:CDS 40.0%
CGTAATGTTCTTCGTCTAGA+AGG - chr4_4:10770615-10770634 None:intergenic 40.0%
TAGACGAAGAACATTACGAG+AGG + chr4_4:10770617-10770636 Msa0669220:CDS 40.0%
TTAAGTCCATCATGCCACAA+AGG - chr4_4:10770736-10770755 None:intergenic 40.0%
! AAGTTCCTTTTTGTGACCGA+TGG + chr4_4:10770754-10770773 Msa0669220:CDS 40.0%
TTGTTCCATCGGTCACAAAA+AGG - chr4_4:10770762-10770781 None:intergenic 40.0%
! TTATACCCCTTCTTTTGACG+GGG + chr4_4:10770795-10770814 Msa0669220:CDS 40.0%
CCAGTTCTATCGCAAGTATA+AGG - chr4_4:10770853-10770872 None:intergenic 40.0%
CCTTATACTTGCGATAGAAC+TGG + chr4_4:10770850-10770869 Msa0669220:CDS 40.0%
!! ATATCGCAATGGACTATTGG+TGG + chr4_4:10770988-10771007 Msa0669220:CDS 40.0%
CAGATTCTGAGTAGCACTTT+CGG - chr4_4:10771031-10771050 None:intergenic 40.0%
!! ATGGTGATGGAGAATTGAGG+AGG - chr4_4:10767726-10767745 None:intergenic 45.0%
GAGAGTGAAAGAGAGGAAGA+AGG - chr4_4:10767757-10767776 None:intergenic 45.0%
!! CTAATGGTGGGTCATCGTAT+GGG - chr4_4:10767997-10768016 None:intergenic 45.0%
!! ACTAATGGTGGGTCATCGTA+TGG - chr4_4:10767998-10768017 None:intergenic 45.0%
AGTTGGGGAAGATGAGTTTG+GGG + chr4_4:10768216-10768235 Msa0669220:CDS 45.0%
! TTTGGGGAGGAGATGGTTTT+GGG + chr4_4:10768232-10768251 Msa0669220:CDS 45.0%
AGAGGGGTGAAGTTTGATTC+GGG + chr4_4:10768280-10768299 Msa0669220:CDS 45.0%
!! TTTGATTCGGGGTTAAGGAC+TGG + chr4_4:10768292-10768311 Msa0669220:CDS 45.0%
!! TTGATTCGGGGTTAAGGACT+GGG + chr4_4:10768293-10768312 Msa0669220:CDS 45.0%
!! TGATGATGGGAAGATGGGAA+TGG + chr4_4:10768342-10768361 Msa0669220:CDS 45.0%
GATTGTTAAGGAATGTGCCG+AGG + chr4_4:10768366-10768385 Msa0669220:CDS 45.0%
! TTTTACGACGAGGGATGCAT+CGG - chr4_4:10768572-10768591 None:intergenic 45.0%
TGCATCCCTCGTCGTAAAAT+TGG + chr4_4:10768573-10768592 Msa0669220:intron 45.0%
CACAACCAAGAAAGGTCATC+TGG - chr4_4:10768694-10768713 None:intergenic 45.0%
CCAAATCTGCCTGTTAAGGA+GGG - chr4_4:10768786-10768805 None:intergenic 45.0%
ACCAAATCTGCCTGTTAAGG+AGG - chr4_4:10768787-10768806 None:intergenic 45.0%
CCTACCAAATCTGCCTGTTA+AGG - chr4_4:10768790-10768809 None:intergenic 45.0%
! CCTTAACAGGCAGATTTGGT+AGG + chr4_4:10768787-10768806 Msa0669220:intron 45.0%
GCTTCCCTTCCCAAATAACA+TGG - chr4_4:10769276-10769295 None:intergenic 45.0%
CACGTCAAATTGAGGTTCAG+AGG + chr4_4:10769883-10769902 Msa0669220:intron 45.0%
! ACCAAGGTCACTGCATTTTG+GGG + chr4_4:10770222-10770241 Msa0669220:intron 45.0%
AAGTGGTCCAAGAAGTTTGG+CGG + chr4_4:10770463-10770482 Msa0669220:CDS 45.0%
TGAAGTTTCAAGAACCGAGC+TGG + chr4_4:10770585-10770604 Msa0669220:CDS 45.0%
GTCTAGAAGGAATTCCAGCT+CGG - chr4_4:10770602-10770621 None:intergenic 45.0%
GTATTACCATTACACTGCCG+AGG + chr4_4:10770702-10770721 Msa0669220:CDS 45.0%
AGATTTCCTCGGCAGTGTAA+TGG - chr4_4:10770711-10770730 None:intergenic 45.0%
GCTGTCTCTCCAAAACATCT+TGG - chr4_4:10770942-10770961 None:intergenic 45.0%
CAGCCGGAATTATATCGCAA+TGG + chr4_4:10770977-10770996 Msa0669220:CDS 45.0%
TGGACTATTGGTGGAGTTAG+AGG + chr4_4:10770997-10771016 Msa0669220:CDS 45.0%
TTCTGAGTAGCACTTTCGGT+AGG - chr4_4:10771027-10771046 None:intergenic 45.0%
!!! TGAATTTTTATATATTTATT+CGG + chr4_4:10769426-10769445 Msa0669220:intron 5.0%
TTGTTTCGGAGCAGCACAGA+GGG + chr4_4:10768021-10768040 Msa0669220:CDS 50.0%
!! CGGCTTTGTTGGGGAAAGTT+GGG + chr4_4:10768200-10768219 Msa0669220:CDS 50.0%
!! GGCTTTGTTGGGGAAAGTTG+GGG + chr4_4:10768201-10768220 Msa0669220:CDS 50.0%
AGATGAGTTTGGGGAGGAGA+TGG + chr4_4:10768225-10768244 Msa0669220:CDS 50.0%
! GTTTGGGGAGGAGATGGTTT+TGG + chr4_4:10768231-10768250 Msa0669220:CDS 50.0%
!! TTGGGGAGGAGATGGTTTTG+GGG + chr4_4:10768233-10768252 Msa0669220:CDS 50.0%
! AAGGAGAAGGTGCAGACTAG+AGG + chr4_4:10768262-10768281 Msa0669220:CDS 50.0%
! AGGAGAAGGTGCAGACTAGA+GGG + chr4_4:10768263-10768282 Msa0669220:CDS 50.0%
! GAGGGGTGAAGTTTGATTCG+GGG + chr4_4:10768281-10768300 Msa0669220:CDS 50.0%
GCTATCAGCTATTGGCCACT+CGG + chr4_4:10768660-10768679 Msa0669220:intron 50.0%
CTATCAGCTATTGGCCACTC+GGG + chr4_4:10768661-10768680 Msa0669220:intron 50.0%
ACGCTCCAGATGACCTTTCT+TGG + chr4_4:10768686-10768705 Msa0669220:intron 50.0%
AATCTGCCTGTTAAGGAGGG+AGG - chr4_4:10768783-10768802 None:intergenic 50.0%
CCCTCCTTAACAGGCAGATT+TGG + chr4_4:10768783-10768802 Msa0669220:intron 50.0%
ACCCCAAAATGCAGTGACCT+TGG - chr4_4:10770226-10770245 None:intergenic 50.0%
TATGTGTACCACTGCAGGCT+AGG + chr4_4:10770374-10770393 Msa0669220:intron 50.0%
TGGAAAATCCTAGCCTGCAG+TGG - chr4_4:10770385-10770404 None:intergenic 50.0%
CGTGATCTCCACAGAGGTAA+TGG - chr4_4:10770514-10770533 None:intergenic 50.0%
CCACAAAGGCGAGATTTCCT+CGG - chr4_4:10770722-10770741 None:intergenic 50.0%
ATCTCGCCTTTGTGGCATGA+TGG + chr4_4:10770727-10770746 Msa0669220:CDS 50.0%
CACAACCCCGTCAAAAGAAG+GGG - chr4_4:10770803-10770822 None:intergenic 50.0%
CCACAACCCCGTCAAAAGAA+GGG - chr4_4:10770804-10770823 None:intergenic 50.0%
ACCACAACCCCGTCAAAAGA+AGG - chr4_4:10770805-10770824 None:intergenic 50.0%
! TCTTTTGACGGGGTTGTGGT+TGG + chr4_4:10770805-10770824 Msa0669220:CDS 50.0%
! ACTTGCGATAGAACTGGCTC+TGG + chr4_4:10770856-10770875 Msa0669220:CDS 50.0%
!! TGGCTCTGGTGATGCTATTG+TGG + chr4_4:10770870-10770889 Msa0669220:CDS 50.0%
CTACGTTTCGCTATTGCAGC+CGG + chr4_4:10770961-10770980 Msa0669220:CDS 50.0%
! GTTGTTTCGGAGCAGCACAG+AGG + chr4_4:10768020-10768039 Msa0669220:CDS 55.0%
ACTCCTGCACACGCACTGTA+GGG - chr4_4:10768054-10768073 None:intergenic 55.0%
AACTCCTGCACACGCACTGT+AGG - chr4_4:10768055-10768074 None:intergenic 55.0%
!! GCGGCTTTGTTGGGGAAAGT+TGG + chr4_4:10768199-10768218 Msa0669220:CDS 55.0%
TGGGGAAGATGAGTTTGGGG+AGG + chr4_4:10768219-10768238 Msa0669220:CDS 55.0%
! GGAGAAGGTGCAGACTAGAG+GGG + chr4_4:10768264-10768283 Msa0669220:CDS 55.0%
CACAAGGCCGCCAAACTTCT+TGG - chr4_4:10770473-10770492 None:intergenic 55.0%
TCATCGCGTGATCTCCACAG+AGG - chr4_4:10770520-10770539 None:intergenic 55.0%
CCGAGGAAATCTCGCCTTTG+TGG + chr4_4:10770719-10770738 Msa0669220:CDS 55.0%
! CCCTTCTTTTGACGGGGTTG+TGG + chr4_4:10770801-10770820 Msa0669220:CDS 55.0%
TCTCCCTACAGTGCGTGTGC+AGG + chr4_4:10768048-10768067 Msa0669220:CDS 60.0%
GCGTGTGCAGGAGTTTCCCA+TGG + chr4_4:10768060-10768079 Msa0669220:CDS 60.0%
ACCAGGTGCTCTCGCGAACT+CGG - chr4_4:10768131-10768150 None:intergenic 60.0%
!! AGTTCGCGAGAGCACCTGGT+GGG + chr4_4:10768131-10768150 Msa0669220:CDS 60.0%
ACATTTGACGGTGGCCCACC+AGG - chr4_4:10768148-10768167 None:intergenic 60.0%
! TGGTGGGCCACCGTCAAATG+TGG + chr4_4:10768147-10768166 Msa0669220:CDS 60.0%
TGGGCCACCGTCAAATGTGG+CGG + chr4_4:10768150-10768169 Msa0669220:CDS 60.0%
TGGGCCACCGCCACATTTGA+CGG - chr4_4:10768160-10768179 None:intergenic 60.0%
GGGAGACCTCCCTCCTTAAC+AGG + chr4_4:10768774-10768793 Msa0669220:intron 60.0%
CCAGGTGCTCTCGCGAACTC+GGG - chr4_4:10768130-10768149 None:intergenic 65.0%
!! GAGTTCGCGAGAGCACCTGG+TGG + chr4_4:10768130-10768149 Msa0669220:CDS 65.0%
GCCACCGTCAAATGTGGCGG+TGG + chr4_4:10768153-10768172 Msa0669220:CDS 65.0%
GCCACCGCCACATTTGACGG+TGG - chr4_4:10768157-10768176 None:intergenic 65.0%
ATGTGGCGGTGGCCCATGTG+CGG + chr4_4:10768164-10768183 Msa0669220:CDS 65.0%
! CATCTGGAGCGTGACCCGAG+TGG - chr4_4:10768678-10768697 None:intergenic 65.0%
GGTGCTCTCGCGAACTCGGG+TGG - chr4_4:10768127-10768146 None:intergenic 70.0%
!! CCCGAGTTCGCGAGAGCACC+TGG + chr4_4:10768127-10768146 Msa0669220:CDS 70.0%
GCGGTGGCCCATGTGCGGTT+GGG + chr4_4:10768169-10768188 Msa0669220:CDS 70.0%
GTGGCCCATGTGCGGTTGGG+CGG + chr4_4:10768172-10768191 Msa0669220:CDS 70.0%
CCGTCCGCCCAACCGCACAT+GGG - chr4_4:10768179-10768198 None:intergenic 70.0%
CCCATGTGCGGTTGGGCGGA+CGG + chr4_4:10768176-10768195 Msa0669220:CDS 70.0%
CCATGTGCGGTTGGGCGGAC+GGG + chr4_4:10768177-10768196 Msa0669220:CDS 70.0%
!! GGCGGACGGGCGGCTTTGTT+GGG + chr4_4:10768190-10768209 Msa0669220:CDS 70.0%
!! GCGGACGGGCGGCTTTGTTG+GGG + chr4_4:10768191-10768210 Msa0669220:CDS 70.0%
GGCGGTGGCCCATGTGCGGT+TGG + chr4_4:10768168-10768187 Msa0669220:CDS 75.0%
CCCGTCCGCCCAACCGCACA+TGG - chr4_4:10768180-10768199 None:intergenic 75.0%
TGTGCGGTTGGGCGGACGGG+CGG + chr4_4:10768180-10768199 Msa0669220:CDS 75.0%
! GGGCGGACGGGCGGCTTTGT+TGG + chr4_4:10768189-10768208 Msa0669220:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 10767596 10771321 10767596 ID=Msa0669220;Name=Msa0669220
chr4_4 mRNA 10767596 10771321 10767596 ID=Msa0669220-mRNA-1;Parent=Msa0669220;Name=Msa0669220-mRNA-1;_AED=0.01;_eAED=0.01;_QI=123|1|1|1|1|1|2|238|468
chr4_4 exon 10767596 10768432 10767596 ID=Msa0669220-mRNA-1:exon:3198;Parent=Msa0669220-mRNA-1
chr4_4 exon 10770391 10771321 10770391 ID=Msa0669220-mRNA-1:exon:3199;Parent=Msa0669220-mRNA-1
chr4_4 five_prime_UTR 10767596 10767718 10767596 ID=Msa0669220-mRNA-1:five_prime_utr;Parent=Msa0669220-mRNA-1
chr4_4 CDS 10767719 10768432 10767719 ID=Msa0669220-mRNA-1:cds;Parent=Msa0669220-mRNA-1
chr4_4 CDS 10770391 10771083 10770391 ID=Msa0669220-mRNA-1:cds;Parent=Msa0669220-mRNA-1
chr4_4 three_prime_UTR 10771084 10771321 10771084 ID=Msa0669220-mRNA-1:three_prime_utr;Parent=Msa0669220-mRNA-1
Gene Sequence

>Msa0669220

ATGTCCTCCTCAATTCTCCATCACCATAATCTTCTCCTTCTTCCTCTCTTTCACTCTCCAAAAACAACCTCACTTCAAAAACCTCAAACAACCCTTTCTAAATTAAACACAACAACCTCAAAACGACATATAAAAACTCCTAAAGCTTCCACAACAGAAACACAATCCCAAACCTTAAAACGACGCAACAAAAAAAACAACACACCTCAAAACGACACAACAAAAGAACAAGAACAGGAAGAAGAATTCGAAGATTACGACGACGGAATTGATTTCCCATACGATGACCCACCATTAGTATGTTGTTTCGGAGCAGCACAGAGGGAGTTTCTCCCTACAGTGCGTGTGCAGGAGTTTCCCATGGACCCAGATATATACACAGAATGGAAGATGTTACAATGGAAGCCACCCGAGTTCGCGAGAGCACCTGGTGGGCCACCGTCAAATGTGGCGGTGGCCCATGTGCGGTTGGGCGGACGGGCGGCTTTGTTGGGGAAAGTTGGGGAAGATGAGTTTGGGGAGGAGATGGTTTTGGGGATGAATAAGGAGAAGGTGCAGACTAGAGGGGTGAAGTTTGATTCGGGGTTAAGGACTGGGTGTAGTTATATGAAGGTGAAGTTTGATGATGATGGGAAGATGGGAATGGAGATTGTTAAGGAATGTGCCGAGGATTCTCTTAAGAGTGATGAATTGAATCTTTCTGTTTTGAAAGAGGCTAGGATTTTCCATTTCAATTCAGAAGTTCTAACATCCCCTTCTATGGAATCAACTCTGTTCAAAGCAATAAAGTGGTCCAAGAAGTTTGGCGGCCTTGTGTTTTTCGACGTAAACTTGCCATTACCTCTGTGGAGATCACGCGATGAAACTCGAGAAATAATTAAAAAAGCATGGCAGGAAGCAGACATCATTGAAGTTTCAAGAACCGAGCTGGAATTCCTTCTAGACGAAGAACATTACGAGAGGAAGAGAAATTATAAACCACAATACTATGCCGAAGATTACGAACAAACCAAGAATCGTCAAGAGTATTACCATTACACTGCCGAGGAAATCTCGCCTTTGTGGCATGATGGACTTAAGTTCCTTTTTGTGACCGATGGAACAATTAGAATTCACTATTATACCCCTTCTTTTGACGGGGTTGTGGTTGGAACAGAAGACGTGCTCATAACTCCTTATACTTGCGATAGAACTGGCTCTGGTGATGCTATTGTGGCTGCTATTATGAGAAAACTAACCACTTGTCGAGAAATGTTTGAAGACCAAGATGTTTTGGAGAGACAGCTACGTTTCGCTATTGCAGCCGGAATTATATCGCAATGGACTATTGGTGGAGTTAGAGGTTTTCCTACCGAAAGTGCTACTCAGAATCTGAAAGAACAAGTTTATGTACCTTCCATGTGGTGA

Protein sequence

>Msa0669220

MSSSILHHHNLLLLPLFHSPKTTSLQKPQTTLSKLNTTTSKRHIKTPKASTTETQSQTLKRRNKKNNTPQNDTTKEQEQEEEFEDYDDGIDFPYDDPPLVCCFGAAQREFLPTVRVQEFPMDPDIYTEWKMLQWKPPEFARAPGGPPSNVAVAHVRLGGRAALLGKVGEDEFGEEMVLGMNKEKVQTRGVKFDSGLRTGCSYMKVKFDDDGKMGMEIVKECAEDSLKSDELNLSVLKEARIFHFNSEVLTSPSMESTLFKAIKWSKKFGGLVFFDVNLPLPLWRSRDETREIIKKAWQEADIIEVSRTELEFLLDEEHYERKRNYKPQYYAEDYEQTKNRQEYYHYTAEEISPLWHDGLKFLFVTDGTIRIHYYTPSFDGVVVGTEDVLITPYTCDRTGSGDAIVAAIMRKLTTCREMFEDQDVLERQLRFAIAAGIISQWTIGGVRGFPTESATQNLKEQVYVPSMW*