AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0877420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0877420 MtrunA17_Chr6g0459351 96.296 270 10 0 1 270 1 270 0.0 528
Msa0877420 MtrunA17_Chr6g0459281 81.413 269 50 0 1 269 1 269 2.24e-163 453
Msa0877420 MtrunA17_Chr6g0459261 73.208 265 71 0 1 265 13 277 8.12e-144 404
Msa0877420 MtrunA17_Chr6g0459271 74.340 265 68 0 1 265 1 265 6.53e-140 394
Msa0877420 MtrunA17_Chr6g0459301 72.556 266 72 1 1 265 1 266 7.55e-140 394
Msa0877420 MtrunA17_Chr6g0459331 73.180 261 70 0 1 261 1 261 2.99e-135 382
Msa0877420 MtrunA17_Chr7g0270441 50.198 253 125 1 9 261 2 253 6.07e-81 244
Msa0877420 MtrunA17_Chr2g0324021 49.802 253 125 2 9 261 2 252 1.36e-80 243
Msa0877420 MtrunA17_Chr7g0266981 48.276 261 133 2 1 261 1 259 1.02e-77 236
Msa0877420 MtrunA17_Chr4g0044111 47.510 261 135 2 1 261 1 259 1.99e-76 233
Msa0877420 MtrunA17_Chr7g0270451 47.600 250 129 2 12 261 5 252 3.15e-74 227
Msa0877420 MtrunA17_Chr7g0266891 45.783 249 133 2 13 261 7 253 5.66e-71 219
Msa0877420 MtrunA17_Chr4g0025971 46.693 257 126 5 6 259 7 255 2.99e-69 215
Msa0877420 MtrunA17_Chr7g0244061 46.154 273 119 8 9 259 25 291 1.09e-68 214
Msa0877420 MtrunA17_Chr4g0025981 45.703 256 133 4 5 260 34 283 1.60e-68 215
Msa0877420 MtrunA17_Chr4g0026001 43.446 267 145 4 1 266 1 262 1.14e-66 208
Msa0877420 MtrunA17_Chr4g0044131 43.200 250 140 2 12 261 7 254 2.62e-64 202
Msa0877420 MtrunA17_Chr4g0040371 42.857 266 141 3 12 270 18 279 8.84e-63 199
Msa0877420 MtrunA17_Chr7g0268591 39.245 265 153 4 7 266 27 288 9.26e-59 189
Msa0877420 MtrunA17_Chr7g0252031 41.085 258 139 6 12 261 34 286 2.20e-57 185
Msa0877420 MtrunA17_Chr7g0267011 46.032 189 100 2 12 200 7 193 5.41e-54 173
Msa0877420 MtrunA17_Chr7g0267001 39.600 250 131 3 12 261 7 236 2.43e-51 168
Msa0877420 MtrunA17_Chr3g0084871 38.722 266 154 4 3 261 6 269 1.81e-50 167
Msa0877420 MtrunA17_Chr7g0266991 40.517 232 119 3 12 243 24 236 5.37e-47 157
Msa0877420 MtrunA17_Chr6g0463951 48.503 167 85 1 95 261 1 166 5.79e-45 149
Msa0877420 MtrunA17_Chr7g0270471 46.809 141 75 0 121 261 1 141 3.40e-39 134
Msa0877420 MtrunA17_Chr4g0044121 38.323 167 102 1 95 261 1 166 2.23e-30 112
Msa0877420 MtrunA17_Chr7g0270461 56.122 98 42 1 12 109 45 141 3.86e-29 107
Msa0877420 MtrunA17_Chr3g0122901 30.996 271 163 10 1 262 64 319 5.92e-28 109
Msa0877420 MtrunA17_Chr4g0075531 31.873 251 158 6 12 259 6 246 1.42e-27 106
Msa0877420 MtrunA17_Chr7g0272961 31.439 264 150 10 12 259 39 287 1.52e-27 107
Msa0877420 MtrunA17_Chr1g0191751 33.080 263 153 9 9 259 97 348 4.15e-27 107
Msa0877420 MtrunA17_Chr7g0259521 31.418 261 165 6 9 262 2 255 2.35e-26 103
Msa0877420 MtrunA17_Chr3g0142651 40.171 117 65 2 95 209 1 114 4.77e-26 99.4
Msa0877420 MtrunA17_Chr7g0259531 31.518 257 166 6 10 261 8 259 1.29e-24 99.4
Msa0877420 MtrunA17_Chr6g0459341 88.462 52 6 0 1 52 1 52 2.37e-23 91.7
Msa0877420 MtrunA17_Chr4g0074511 27.341 267 166 8 8 259 35 288 2.38e-23 96.3
Msa0877420 MtrunA17_Chr0c30g0494101 26.866 268 164 9 8 259 35 286 1.67e-19 85.9
Msa0877420 MtrunA17_Chr1g0182511 28.571 259 174 5 10 262 11 264 5.81e-19 84.0
Msa0877420 MtrunA17_Chr4g0028911 27.600 250 164 7 13 252 11 253 8.06e-19 83.6
Msa0877420 MtrunA17_Chr3g0112171 30.337 267 168 9 2 261 4 259 1.02e-18 83.6
Msa0877420 MtrunA17_Chr7g0239451 27.863 262 181 6 4 261 7 264 1.20e-18 83.2
Msa0877420 MtrunA17_Chr7g0239481 29.851 268 178 7 1 262 1 264 1.42e-18 82.8
Msa0877420 MtrunA17_Chr4g0028921 28.063 253 159 8 13 252 11 253 3.36e-18 82.0
Msa0877420 MtrunA17_Chr3g0112151 29.455 275 158 12 3 261 76 330 3.57e-18 82.8
Msa0877420 MtrunA17_Chr3g0112141 29.344 259 159 9 13 261 17 261 4.43e-17 79.0
Msa0877420 MtrunA17_Chr7g0239511 28.148 270 179 8 1 261 1 264 4.94e-17 78.6
Msa0877420 MtrunA17_Chr3g0112271 28.346 254 172 6 9 259 13 259 6.12e-17 78.6
Msa0877420 MtrunA17_Chr7g0239501 29.412 272 173 10 1 261 1 264 2.53e-16 76.6
Msa0877420 MtrunA17_Chr7g0239491 26.154 260 185 5 5 261 7 262 7.15e-16 75.5
Msa0877420 MtrunA17_Chr3g0112261 29.365 252 164 8 13 259 19 261 9.24e-16 75.1
Msa0877420 MtrunA17_Chr1g0171831 25.591 254 169 7 12 251 13 260 5.20e-15 72.8
Msa0877420 MtrunA17_Chr4g0045041 28.910 211 126 5 14 207 5 208 5.36e-14 71.6
Msa0877420 MtrunA17_Chr4g0032181 29.060 234 144 7 35 259 23 243 1.61e-13 68.6
Msa0877420 MtrunA17_Chr4g0076931 26.203 187 133 5 13 196 6 190 1.27e-11 63.2
Msa0877420 MtrunA17_Chr4g0032141 26.493 268 163 9 7 259 50 298 4.30e-11 62.4
Msa0877420 MtrunA17_Chr8g0355281 25.604 207 145 4 7 205 63 268 8.22e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0877420 AT2G47140.1 48.617 253 128 2 9 261 2 252 1.14e-78 239
Msa0877420 AT2G47130.1 48.249 257 122 5 9 261 2 251 4.44e-73 224
Msa0877420 AT3G29260.1 47.860 257 123 5 9 261 2 251 1.27e-71 221
Msa0877420 AT2G47120.1 47.036 253 130 4 9 261 2 250 1.52e-71 221
Msa0877420 AT3G29250.3 47.287 258 128 5 7 261 36 288 1.63e-70 219
Msa0877420 AT3G29250.2 47.266 256 127 5 9 261 2 252 1.73e-70 218
Msa0877420 AT2G47120.2 46.800 250 129 4 12 261 6 251 2.40e-70 218
Msa0877420 AT3G29250.1 46.923 260 128 6 7 261 36 290 1.56e-68 214
Msa0877420 AT3G51680.1 42.238 277 138 5 1 259 20 292 3.46e-63 201
Msa0877420 AT3G26760.1 41.045 268 147 6 7 266 30 294 3.30e-60 193
Msa0877420 AT3G26770.1 39.844 256 145 5 10 259 38 290 7.92e-57 184
Msa0877420 AT1G52340.1 42.308 260 138 5 12 261 17 274 5.37e-56 182
Msa0877420 AT4G03140.1 40.392 255 144 4 12 261 77 328 1.84e-55 182
Msa0877420 AT3G42960.1 41.971 274 145 7 6 270 1 269 1.90e-54 177
Msa0877420 AT5G18210.1 32.453 265 152 7 13 262 8 260 2.73e-28 109
Msa0877420 AT1G54870.1 31.343 268 161 9 4 259 73 329 7.24e-27 107
Msa0877420 AT1G54870.2 31.343 268 161 9 4 259 75 331 8.03e-27 107
Msa0877420 AT3G03980.1 30.996 271 170 5 4 262 5 270 3.19e-26 103
Msa0877420 AT3G04000.1 30.292 274 173 5 2 262 3 271 3.43e-26 103
Msa0877420 AT3G05260.1 29.478 268 171 8 4 262 28 286 2.44e-25 102
Msa0877420 AT5G18210.2 32.927 246 142 6 13 245 8 243 7.91e-25 100
Msa0877420 AT4G13180.1 29.630 270 174 7 1 262 1 262 2.51e-24 99.0
Msa0877420 AT4G05530.1 31.325 249 162 6 12 259 8 248 9.64e-23 94.4
Msa0877420 AT1G24360.1 27.559 254 167 7 12 259 73 315 2.30e-22 94.7
Msa0877420 AT5G06060.1 30.418 263 163 9 7 261 3 253 8.14e-21 89.4
Msa0877420 AT2G29340.2 30.196 255 158 8 13 259 7 249 2.22e-18 82.8
Msa0877420 AT2G29340.1 30.196 255 158 8 13 259 7 249 3.57e-18 82.8
Msa0877420 AT2G29360.1 29.699 266 167 7 7 261 4 260 1.06e-17 80.9
Msa0877420 AT2G30670.1 27.490 251 170 7 13 259 7 249 2.27e-17 79.7
Msa0877420 AT2G29150.1 30.303 264 165 9 3 259 6 257 3.96e-17 79.3
Msa0877420 AT2G29310.1 29.961 257 160 10 13 261 7 251 8.11e-17 78.6
Msa0877420 AT1G63380.1 26.054 261 180 7 13 264 17 273 3.27e-16 77.0
Msa0877420 AT1G63380.3 26.054 261 180 7 13 264 15 271 3.39e-16 77.0
Msa0877420 AT1G63380.4 26.054 261 180 7 13 264 19 275 3.52e-16 77.0
Msa0877420 AT2G29340.3 31.188 202 128 6 13 209 7 202 4.14e-16 75.1
Msa0877420 AT2G29340.4 31.188 202 128 6 13 209 7 202 4.14e-16 75.1
Msa0877420 AT1G63380.2 26.054 261 180 7 13 264 22 278 4.49e-16 76.6
Msa0877420 AT2G29330.1 29.084 251 166 8 13 259 7 249 7.67e-16 75.5
Msa0877420 AT5G50770.1 30.481 187 122 5 13 196 45 226 1.03e-15 76.3
Msa0877420 AT2G29350.1 28.839 267 155 9 8 259 10 256 1.04e-15 75.5
Msa0877420 AT3G46170.1 25.094 267 176 8 12 264 25 281 1.70e-15 75.1
Msa0877420 AT2G29260.1 29.365 252 164 8 13 259 68 310 2.09e-15 75.1
Msa0877420 AT3G55290.2 25.940 266 173 9 13 264 17 272 3.58e-15 73.9
Msa0877420 AT3G55290.1 25.940 266 173 9 13 264 18 273 3.73e-15 73.9
Msa0877420 AT1G62610.4 25.287 261 182 7 13 264 19 275 6.42e-15 73.6
Msa0877420 AT1G62610.3 25.287 261 182 7 13 264 15 271 6.52e-15 73.2
Msa0877420 AT1G62610.1 25.287 261 182 7 13 264 14 270 6.77e-15 73.2
Msa0877420 AT1G62610.2 25.287 261 182 7 13 264 13 269 6.83e-15 73.2
Msa0877420 AT2G29370.1 28.625 269 168 8 3 261 6 260 9.13e-15 72.8
Msa0877420 AT5G50700.1 26.238 202 143 4 13 212 45 242 1.25e-14 73.2
Msa0877420 AT5G50600.1 26.238 202 143 4 13 212 45 242 1.25e-14 73.2
Msa0877420 AT5G50590.2 28.922 204 125 7 10 202 42 236 5.69e-14 70.1
Msa0877420 AT5G50690.2 28.922 204 125 7 10 202 42 236 5.69e-14 70.1
Msa0877420 AT3G47360.1 26.768 198 131 7 13 204 45 234 6.26e-14 70.9
Msa0877420 AT5G50590.1 29.282 181 115 5 10 184 42 215 1.32e-13 69.7
Msa0877420 AT5G50690.1 29.282 181 115 5 10 184 42 215 1.32e-13 69.7
Msa0877420 AT1G49670.2 31.034 203 116 7 18 203 9 204 1.38e-13 70.9
Msa0877420 AT1G49670.1 31.034 203 116 7 18 203 9 204 2.02e-13 70.5
Msa0877420 AT3G47350.2 24.365 197 137 5 13 204 44 233 3.00e-13 68.9
Msa0877420 AT1G07440.1 28.063 253 165 8 13 259 12 253 3.35e-13 68.2
Msa0877420 AT2G29320.1 28.571 259 158 10 13 259 13 256 3.53e-13 68.2
Msa0877420 AT3G47350.1 24.365 197 137 5 13 204 44 233 4.05e-13 68.6
Msa0877420 AT3G55310.1 25.830 271 167 11 13 264 17 272 4.55e-13 68.2
Msa0877420 AT2G29310.3 30.348 201 129 7 13 208 7 201 4.95e-13 66.6
Msa0877420 AT3G47350.3 30.189 106 68 2 13 116 44 145 6.66e-11 61.6

Find 73 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTCGAAGCACGCAATAAT+AGG 0.198186 6_1:-16822074 Msa0877420:CDS
AACTTGCAAAGCATGGAATA+AGG 0.289760 6_1:-16822028 Msa0877420:CDS
CACCCCATTCTTGATATAAA+AGG 0.291115 6_1:-16822884 Msa0877420:five_prime_UTR
TTTAATTAAAGAAGAATGTT+TGG 0.297933 6_1:+16821737 None:intergenic
GGCAGATGCTGTGTTGTTCT+TGG 0.317529 6_1:-16821871 Msa0877420:CDS
CAATCAACGGTCAAAACTTA+TGG 0.317863 6_1:-16822582 Msa0877420:CDS
CACCATACGTGCACCTTGTT+CGG 0.329714 6_1:+16822722 None:intergenic
CACTCACTAACAGCAGTCTT+AGG 0.352793 6_1:-16822815 Msa0877420:CDS
TTACACCTCTAAGAAGTGTT+AGG 0.354863 6_1:+16821680 None:intergenic
GATATTATGTTTAGCAATGC+TGG 0.362324 6_1:-16822299 Msa0877420:CDS
CGTCGCTTTGCCGATGCCGC+TGG 0.363328 6_1:+16822758 None:intergenic
GTGTGCACTGCTAGCGTTGC+CGG 0.365527 6_1:-16822131 Msa0877420:CDS
CTTCATTGCCCAACTCATCT+TGG 0.372263 6_1:+16822685 None:intergenic
GCCGATGCCGCTGGCACCTC+CGG 0.378274 6_1:+16822767 None:intergenic
AAATTCCTAACACTTCTTAG+AGG 0.387376 6_1:-16821685 Msa0877420:three_prime_UTR
TTAATTAAAGAAGAATGTTT+GGG 0.387878 6_1:+16821738 None:intergenic
AATGAAGTGGCTGCATCTAT+TGG 0.423417 6_1:-16822669 Msa0877420:CDS
AGTGACAAAGTCAGATTCAT+TGG 0.438975 6_1:+16821845 None:intergenic
GAACGTTAACTGAGAACAAC+TGG 0.439565 6_1:+16822222 None:intergenic
ACCGGAGGTGCCAGCGGCAT+CGG 0.446928 6_1:-16822768 Msa0877420:CDS
TTGTTCTCAGTTAACGTTCG+AGG 0.459160 6_1:-16822218 Msa0877420:CDS
GTGGATGGTAGCTTTCTTGA+TGG 0.469944 6_1:-16821807 Msa0877420:CDS
TTTGTATTGAATTTATTTGA+AGG 0.474915 6_1:-16821713 Msa0877420:three_prime_UTR
GTGAATTGTGTATCACCAAA+TGG 0.474979 6_1:-16822005 Msa0877420:CDS
CGCCGACATCCAAGATGAGT+TGG 0.475014 6_1:-16822694 Msa0877420:CDS
CTCAGTTAACGTTCGAGGAA+TGG 0.475650 6_1:-16822213 Msa0877420:CDS
GGAGAATACAAGAGGTTGGA+AGG 0.477377 6_1:-16821918 Msa0877420:CDS
ACTTGCAAAGCATGGAATAA+GGG 0.486045 6_1:-16822027 Msa0877420:CDS
CGATGGTGGACGGGTGCGTG+AGG 0.489479 6_1:-16822163 Msa0877420:CDS
AACAGCAGTCTTAGGTTAGC+AGG 0.489763 6_1:-16822807 Msa0877420:CDS
TTGTATTGAATTTATTTGAA+GGG 0.491819 6_1:-16821712 Msa0877420:three_prime_UTR
TCTAGCAATTTCATAGTCAA+TGG 0.495865 6_1:+16821972 None:intergenic
GGCCTTGATCTTCGTGTGGA+TGG 0.499300 6_1:-16821822 Msa0877420:CDS
AGTGAACATAGGTGCACCTA+TGG 0.499748 6_1:+16822643 None:intergenic
CTTCATGCTACCGTTGCTAC+CGG 0.505500 6_1:+16822112 None:intergenic
AATGGTGTTGCTAATCCATT+TGG 0.510778 6_1:+16821990 None:intergenic
GATGGTGGACGGGTGCGTGA+GGG 0.515188 6_1:-16822162 Msa0877420:CDS
ATATTATGTTTAGCAATGCT+GGG 0.517928 6_1:-16822298 Msa0877420:CDS
TCCAACACAGTCTGATCAGA+TGG 0.518322 6_1:+16822266 None:intergenic
GGCAAAATAGCCATTGTCAC+CGG 0.521032 6_1:-16822786 Msa0877420:CDS
ATGGTGGACGGGTGCGTGAG+GGG 0.521957 6_1:-16822161 Msa0877420:CDS
AACGGTCAAAACTTATGGAC+AGG 0.523815 6_1:-16822577 Msa0877420:intron
CGGCACGTGCGATGGTGGAC+GGG 0.525585 6_1:-16822172 Msa0877420:CDS
GCGGCACGTGCGATGGTGGA+CGG 0.525845 6_1:-16822173 Msa0877420:CDS
TGCCGAACAAGGTGCACGTA+TGG 0.526292 6_1:-16822724 Msa0877420:CDS
TGTCGAAGCACGCAATAATA+GGG 0.528464 6_1:-16822073 Msa0877420:CDS
AATGAATCTGACTTTGTCAC+TGG 0.530339 6_1:-16821843 Msa0877420:CDS
GCGCATGTCTTTGCCGAACA+AGG 0.531534 6_1:-16822735 Msa0877420:CDS
AGTAAGCAACTTGCAAAGCA+TGG 0.531560 6_1:-16822035 Msa0877420:CDS
GCCGACATCCAAGATGAGTT+GGG 0.536561 6_1:-16822693 Msa0877420:CDS
ACATGCGGCACGTGCGATGG+TGG 0.538249 6_1:-16822177 Msa0877420:CDS
CTTGATATAAAAGGCTAGCA+TGG 0.543086 6_1:-16822875 Msa0877420:five_prime_UTR
GCTGGCACCTCCGGTGACAA+TGG 0.548752 6_1:+16822776 None:intergenic
CTGCATCTATTGGTGGCCAT+AGG 0.554423 6_1:-16822659 Msa0877420:CDS
TACCATCCACACGAAGATCA+AGG 0.559297 6_1:+16821820 None:intergenic
CACTGGCCTTGATCTTCGTG+TGG 0.560496 6_1:-16821826 Msa0877420:CDS
ATACAAGAGGTTGGAAGGAG+TGG 0.561860 6_1:-16821913 Msa0877420:CDS
CGAACAAGGTGCACGTATGG+TGG 0.575204 6_1:-16822721 Msa0877420:CDS
GCCCAACTCATCTTGGATGT+CGG 0.577520 6_1:+16822692 None:intergenic
AAAACATGCGGCACGTGCGA+TGG 0.581499 6_1:-16822180 Msa0877420:CDS
TATTCTAGACCACACGTCAC+CGG 0.585852 6_1:-16822919 None:intergenic
TCCATCTGATCAGACTGTGT+TGG 0.587052 6_1:-16822267 Msa0877420:CDS
ACTATGAAATTGCTAGATGC+AGG 0.589183 6_1:-16821966 Msa0877420:CDS
ATTGTCACCGGAGGTGCCAG+CGG 0.592750 6_1:-16822774 Msa0877420:CDS
GCTAGCGTTGCCGGTAGCAA+CGG 0.596382 6_1:-16822122 Msa0877420:CDS
GGCATTGTGCGTAAAACATG+CGG 0.617917 6_1:-16822192 Msa0877420:CDS
CAGCGGCATCGGCAAAGCGA+CGG 0.626837 6_1:-16822757 Msa0877420:CDS
GAAGTGGCTGCATCTATTGG+TGG 0.628156 6_1:-16822666 Msa0877420:CDS
TGCTACGTCACAGTGAACAT+AGG 0.633923 6_1:+16822632 None:intergenic
AGATGAGTTGGGCAATGAAG+TGG 0.652574 6_1:-16822682 Msa0877420:CDS
TCTTAGAGGTGTAAAGAGTG+AGG 0.671910 6_1:-16821671 Msa0877420:three_prime_UTR
GGTTCTCAGCACTAAACATG+TGG 0.675466 6_1:-16821892 Msa0877420:CDS
AAAATAGCCATTGTCACCGG+AGG 0.684966 6_1:-16822783 Msa0877420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTGTTATCTATAAAAAG+TGG + chr6_1:16821673-16821692 None:intergenic 15.0%
!!! CTTTTTATAGATAACAAAAA+TGG - chr6_1:16821673-16821692 Msa0877420:three_prime_UTR 15.0%
!! TTAATTAAAGAAGAATGTTT+GGG + chr6_1:16822785-16822804 None:intergenic 15.0%
!! TTTAATTAAAGAAGAATGTT+TGG + chr6_1:16822786-16822805 None:intergenic 15.0%
!! TTTGTATTGAATTTATTTGA+AGG - chr6_1:16822807-16822826 Msa0877420:CDS 15.0%
!! TTGTATTGAATTTATTTGAA+GGG - chr6_1:16822808-16822827 Msa0877420:CDS 15.0%
!!! TTTTTGTTATCTATAAAAAG+TGG + chr6_1:16821673-16821692 None:intergenic 15.0%
!!! CTTTTTATAGATAACAAAAA+TGG - chr6_1:16821673-16821692 Msa0877420:three_prime_UTR 15.0%
!! TTAATTAAAGAAGAATGTTT+GGG + chr6_1:16822785-16822804 None:intergenic 15.0%
!! TTTAATTAAAGAAGAATGTT+TGG + chr6_1:16822786-16822805 None:intergenic 15.0%
!! TTTGTATTGAATTTATTTGA+AGG - chr6_1:16822807-16822826 Msa0877420:CDS 15.0%
!! TTGTATTGAATTTATTTGAA+GGG - chr6_1:16822808-16822827 Msa0877420:CDS 15.0%
!! CATAACATATTATCTATCTT+TGG + chr6_1:16822152-16822171 None:intergenic 20.0%
!! CATAACATATTATCTATCTT+TGG + chr6_1:16822152-16822171 None:intergenic 20.0%
!! TAGCCTTTTATATCAAGAAT+GGG + chr6_1:16821642-16821661 None:intergenic 25.0%
! GACAGGTAAATTAATAACTA+AGG - chr6_1:16821960-16821979 Msa0877420:CDS 25.0%
! TTGTTTAGACAAATGATTCA+TGG - chr6_1:16822079-16822098 Msa0877420:CDS 25.0%
!!! CTTATTTTTTTTTCCACAAC+AGG - chr6_1:16822196-16822215 Msa0877420:CDS 25.0%
! ATATTATGTTTAGCAATGCT+GGG - chr6_1:16822222-16822241 Msa0877420:CDS 25.0%
!! TAGCCTTTTATATCAAGAAT+GGG + chr6_1:16821642-16821661 None:intergenic 25.0%
! GACAGGTAAATTAATAACTA+AGG - chr6_1:16821960-16821979 Msa0877420:CDS 25.0%
! TTGTTTAGACAAATGATTCA+TGG - chr6_1:16822079-16822098 Msa0877420:CDS 25.0%
!!! CTTATTTTTTTTTCCACAAC+AGG - chr6_1:16822196-16822215 Msa0877420:CDS 25.0%
! ATATTATGTTTAGCAATGCT+GGG - chr6_1:16822222-16822241 Msa0877420:CDS 25.0%
! AGCCTTTTATATCAAGAATG+GGG + chr6_1:16821641-16821660 None:intergenic 30.0%
!! CTAGCCTTTTATATCAAGAA+TGG + chr6_1:16821643-16821662 None:intergenic 30.0%
CAAAAATCTCGTTCAATCAA+CGG - chr6_1:16821925-16821944 Msa0877420:CDS 30.0%
AACATAATATCTACCTGTTG+TGG + chr6_1:16822212-16822231 None:intergenic 30.0%
GATATTATGTTTAGCAATGC+TGG - chr6_1:16822221-16822240 Msa0877420:CDS 30.0%
TCTAGCAATTTCATAGTCAA+TGG + chr6_1:16822551-16822570 None:intergenic 30.0%
!!! GAGACAGTTGATTTGATTTT+TGG - chr6_1:16822581-16822600 Msa0877420:CDS 30.0%
!! TGATTTTTGGAGAATACAAG+AGG - chr6_1:16822594-16822613 Msa0877420:CDS 30.0%
AAATTCCTAACACTTCTTAG+AGG - chr6_1:16822835-16822854 Msa0877420:exon 30.0%
! AGCCTTTTATATCAAGAATG+GGG + chr6_1:16821641-16821660 None:intergenic 30.0%
!! CTAGCCTTTTATATCAAGAA+TGG + chr6_1:16821643-16821662 None:intergenic 30.0%
CAAAAATCTCGTTCAATCAA+CGG - chr6_1:16821925-16821944 Msa0877420:CDS 30.0%
AACATAATATCTACCTGTTG+TGG + chr6_1:16822212-16822231 None:intergenic 30.0%
GATATTATGTTTAGCAATGC+TGG - chr6_1:16822221-16822240 Msa0877420:CDS 30.0%
TCTAGCAATTTCATAGTCAA+TGG + chr6_1:16822551-16822570 None:intergenic 30.0%
!!! GAGACAGTTGATTTGATTTT+TGG - chr6_1:16822581-16822600 Msa0877420:CDS 30.0%
!! TGATTTTTGGAGAATACAAG+AGG - chr6_1:16822594-16822613 Msa0877420:CDS 30.0%
AAATTCCTAACACTTCTTAG+AGG - chr6_1:16822835-16822854 Msa0877420:exon 30.0%
CACCCCATTCTTGATATAAA+AGG - chr6_1:16821636-16821655 Msa0877420:three_prime_UTR 35.0%
CTTGATATAAAAGGCTAGCA+TGG - chr6_1:16821645-16821664 Msa0877420:three_prime_UTR 35.0%
CAATCAACGGTCAAAACTTA+TGG - chr6_1:16821938-16821957 Msa0877420:CDS 35.0%
AACTTGCAAAGCATGGAATA+AGG - chr6_1:16822492-16822511 Msa0877420:intron 35.0%
ACTTGCAAAGCATGGAATAA+GGG - chr6_1:16822493-16822512 Msa0877420:intron 35.0%
GTGAATTGTGTATCACCAAA+TGG - chr6_1:16822515-16822534 Msa0877420:intron 35.0%
!! AATGGTGTTGCTAATCCATT+TGG + chr6_1:16822533-16822552 None:intergenic 35.0%
ACTATGAAATTGCTAGATGC+AGG - chr6_1:16822554-16822573 Msa0877420:intron 35.0%
!! TTTTGGAGAATACAAGAGGT+TGG - chr6_1:16822598-16822617 Msa0877420:CDS 35.0%
AGTGACAAAGTCAGATTCAT+TGG + chr6_1:16822678-16822697 None:intergenic 35.0%
AATGAATCTGACTTTGTCAC+TGG - chr6_1:16822677-16822696 Msa0877420:CDS 35.0%
!! TTACACCTCTAAGAAGTGTT+AGG + chr6_1:16822843-16822862 None:intergenic 35.0%
CACCCCATTCTTGATATAAA+AGG - chr6_1:16821636-16821655 Msa0877420:three_prime_UTR 35.0%
CTTGATATAAAAGGCTAGCA+TGG - chr6_1:16821645-16821664 Msa0877420:three_prime_UTR 35.0%
CAATCAACGGTCAAAACTTA+TGG - chr6_1:16821938-16821957 Msa0877420:CDS 35.0%
AACTTGCAAAGCATGGAATA+AGG - chr6_1:16822492-16822511 Msa0877420:intron 35.0%
ACTTGCAAAGCATGGAATAA+GGG - chr6_1:16822493-16822512 Msa0877420:intron 35.0%
GTGAATTGTGTATCACCAAA+TGG - chr6_1:16822515-16822534 Msa0877420:intron 35.0%
!! AATGGTGTTGCTAATCCATT+TGG + chr6_1:16822533-16822552 None:intergenic 35.0%
ACTATGAAATTGCTAGATGC+AGG - chr6_1:16822554-16822573 Msa0877420:intron 35.0%
!! TTTTGGAGAATACAAGAGGT+TGG - chr6_1:16822598-16822617 Msa0877420:CDS 35.0%
AGTGACAAAGTCAGATTCAT+TGG + chr6_1:16822678-16822697 None:intergenic 35.0%
AATGAATCTGACTTTGTCAC+TGG - chr6_1:16822677-16822696 Msa0877420:CDS 35.0%
!! TTACACCTCTAAGAAGTGTT+AGG + chr6_1:16822843-16822862 None:intergenic 35.0%
AATGAAGTGGCTGCATCTAT+TGG - chr6_1:16821851-16821870 Msa0877420:CDS 40.0%
AACGGTCAAAACTTATGGAC+AGG - chr6_1:16821943-16821962 Msa0877420:CDS 40.0%
GAACGTTAACTGAGAACAAC+TGG + chr6_1:16822301-16822320 None:intergenic 40.0%
TTGTTCTCAGTTAACGTTCG+AGG - chr6_1:16822302-16822321 Msa0877420:CDS 40.0%
ATGTCGAAGCACGCAATAAT+AGG - chr6_1:16822446-16822465 Msa0877420:intron 40.0%
TGTCGAAGCACGCAATAATA+GGG - chr6_1:16822447-16822466 Msa0877420:intron 40.0%
AGTAAGCAACTTGCAAAGCA+TGG - chr6_1:16822485-16822504 Msa0877420:intron 40.0%
! TCTTAGAGGTGTAAAGAGTG+AGG - chr6_1:16822849-16822868 Msa0877420:exon 40.0%
AATGAAGTGGCTGCATCTAT+TGG - chr6_1:16821851-16821870 Msa0877420:CDS 40.0%
AACGGTCAAAACTTATGGAC+AGG - chr6_1:16821943-16821962 Msa0877420:CDS 40.0%
GAACGTTAACTGAGAACAAC+TGG + chr6_1:16822301-16822320 None:intergenic 40.0%
TTGTTCTCAGTTAACGTTCG+AGG - chr6_1:16822302-16822321 Msa0877420:CDS 40.0%
ATGTCGAAGCACGCAATAAT+AGG - chr6_1:16822446-16822465 Msa0877420:intron 40.0%
TGTCGAAGCACGCAATAATA+GGG - chr6_1:16822447-16822466 Msa0877420:intron 40.0%
AGTAAGCAACTTGCAAAGCA+TGG - chr6_1:16822485-16822504 Msa0877420:intron 40.0%
! TCTTAGAGGTGTAAAGAGTG+AGG - chr6_1:16822849-16822868 Msa0877420:exon 40.0%
! TAGATTTTACCGGTGACGTG+TGG + chr6_1:16821613-16821632 None:intergenic 45.0%
! TGGGGTGCACTAGATTTTAC+CGG + chr6_1:16821623-16821642 None:intergenic 45.0%
CACTCACTAACAGCAGTCTT+AGG - chr6_1:16821705-16821724 Msa0877420:three_prime_UTR 45.0%
AACAGCAGTCTTAGGTTAGC+AGG - chr6_1:16821713-16821732 Msa0877420:three_prime_UTR 45.0%
GGCAAAATAGCCATTGTCAC+CGG - chr6_1:16821734-16821753 Msa0877420:three_prime_UTR 45.0%
AAAATAGCCATTGTCACCGG+AGG - chr6_1:16821737-16821756 Msa0877420:three_prime_UTR 45.0%
CTTCATTGCCCAACTCATCT+TGG + chr6_1:16821838-16821857 None:intergenic 45.0%
! AGATGAGTTGGGCAATGAAG+TGG - chr6_1:16821838-16821857 Msa0877420:CDS 45.0%
AGTGAACATAGGTGCACCTA+TGG + chr6_1:16821880-16821899 None:intergenic 45.0%
TGCTACGTCACAGTGAACAT+AGG + chr6_1:16821891-16821910 None:intergenic 45.0%
TCCATCTGATCAGACTGTGT+TGG - chr6_1:16822253-16822272 Msa0877420:CDS 45.0%
TCCAACACAGTCTGATCAGA+TGG + chr6_1:16822257-16822276 None:intergenic 45.0%
CTCAGTTAACGTTCGAGGAA+TGG - chr6_1:16822307-16822326 Msa0877420:intron 45.0%
GGCATTGTGCGTAAAACATG+CGG - chr6_1:16822328-16822347 Msa0877420:intron 45.0%
GGAGAATACAAGAGGTTGGA+AGG - chr6_1:16822602-16822621 Msa0877420:CDS 45.0%
ATACAAGAGGTTGGAAGGAG+TGG - chr6_1:16822607-16822626 Msa0877420:CDS 45.0%
GGTTCTCAGCACTAAACATG+TGG - chr6_1:16822628-16822647 Msa0877420:CDS 45.0%
TACCATCCACACGAAGATCA+AGG + chr6_1:16822703-16822722 None:intergenic 45.0%
GTGGATGGTAGCTTTCTTGA+TGG - chr6_1:16822713-16822732 Msa0877420:CDS 45.0%
! TAGATTTTACCGGTGACGTG+TGG + chr6_1:16821613-16821632 None:intergenic 45.0%
! TGGGGTGCACTAGATTTTAC+CGG + chr6_1:16821623-16821642 None:intergenic 45.0%
CACTCACTAACAGCAGTCTT+AGG - chr6_1:16821705-16821724 Msa0877420:three_prime_UTR 45.0%
AACAGCAGTCTTAGGTTAGC+AGG - chr6_1:16821713-16821732 Msa0877420:three_prime_UTR 45.0%
GGCAAAATAGCCATTGTCAC+CGG - chr6_1:16821734-16821753 Msa0877420:three_prime_UTR 45.0%
AAAATAGCCATTGTCACCGG+AGG - chr6_1:16821737-16821756 Msa0877420:three_prime_UTR 45.0%
CTTCATTGCCCAACTCATCT+TGG + chr6_1:16821838-16821857 None:intergenic 45.0%
! AGATGAGTTGGGCAATGAAG+TGG - chr6_1:16821838-16821857 Msa0877420:CDS 45.0%
AGTGAACATAGGTGCACCTA+TGG + chr6_1:16821880-16821899 None:intergenic 45.0%
TGCTACGTCACAGTGAACAT+AGG + chr6_1:16821891-16821910 None:intergenic 45.0%
TCCATCTGATCAGACTGTGT+TGG - chr6_1:16822253-16822272 Msa0877420:CDS 45.0%
TCCAACACAGTCTGATCAGA+TGG + chr6_1:16822257-16822276 None:intergenic 45.0%
CTCAGTTAACGTTCGAGGAA+TGG - chr6_1:16822307-16822326 Msa0877420:intron 45.0%
GGCATTGTGCGTAAAACATG+CGG - chr6_1:16822328-16822347 Msa0877420:intron 45.0%
GGAGAATACAAGAGGTTGGA+AGG - chr6_1:16822602-16822621 Msa0877420:CDS 45.0%
ATACAAGAGGTTGGAAGGAG+TGG - chr6_1:16822607-16822626 Msa0877420:CDS 45.0%
GGTTCTCAGCACTAAACATG+TGG - chr6_1:16822628-16822647 Msa0877420:CDS 45.0%
TACCATCCACACGAAGATCA+AGG + chr6_1:16822703-16822722 None:intergenic 45.0%
GTGGATGGTAGCTTTCTTGA+TGG - chr6_1:16822713-16822732 Msa0877420:CDS 45.0%
CACCATACGTGCACCTTGTT+CGG + chr6_1:16821801-16821820 None:intergenic 50.0%
GCCGACATCCAAGATGAGTT+GGG - chr6_1:16821827-16821846 Msa0877420:CDS 50.0%
GCCCAACTCATCTTGGATGT+CGG + chr6_1:16821831-16821850 None:intergenic 50.0%
GAAGTGGCTGCATCTATTGG+TGG - chr6_1:16821854-16821873 Msa0877420:CDS 50.0%
! CTGCATCTATTGGTGGCCAT+AGG - chr6_1:16821861-16821880 Msa0877420:CDS 50.0%
CTTCATGCTACCGTTGCTAC+CGG + chr6_1:16822411-16822430 None:intergenic 50.0%
! GGCAGATGCTGTGTTGTTCT+TGG - chr6_1:16822649-16822668 Msa0877420:CDS 50.0%
CACCATACGTGCACCTTGTT+CGG + chr6_1:16821801-16821820 None:intergenic 50.0%
GCCGACATCCAAGATGAGTT+GGG - chr6_1:16821827-16821846 Msa0877420:CDS 50.0%
GCCCAACTCATCTTGGATGT+CGG + chr6_1:16821831-16821850 None:intergenic 50.0%
GAAGTGGCTGCATCTATTGG+TGG - chr6_1:16821854-16821873 Msa0877420:CDS 50.0%
! CTGCATCTATTGGTGGCCAT+AGG - chr6_1:16821861-16821880 Msa0877420:CDS 50.0%
CTTCATGCTACCGTTGCTAC+CGG + chr6_1:16822411-16822430 None:intergenic 50.0%
! GGCAGATGCTGTGTTGTTCT+TGG - chr6_1:16822649-16822668 Msa0877420:CDS 50.0%
GCGCATGTCTTTGCCGAACA+AGG - chr6_1:16821785-16821804 Msa0877420:CDS 55.0%
TGCCGAACAAGGTGCACGTA+TGG - chr6_1:16821796-16821815 Msa0877420:CDS 55.0%
CGAACAAGGTGCACGTATGG+TGG - chr6_1:16821799-16821818 Msa0877420:CDS 55.0%
CGCCGACATCCAAGATGAGT+TGG - chr6_1:16821826-16821845 Msa0877420:CDS 55.0%
AAAACATGCGGCACGTGCGA+TGG - chr6_1:16822340-16822359 Msa0877420:intron 55.0%
!! CACTGGCCTTGATCTTCGTG+TGG - chr6_1:16822694-16822713 Msa0877420:CDS 55.0%
GGCCTTGATCTTCGTGTGGA+TGG - chr6_1:16822698-16822717 Msa0877420:CDS 55.0%
TACCGGTGACGTGTGGTCTA+GGG + chr6_1:16821606-16821625 None:intergenic 55.0%
TTACCGGTGACGTGTGGTCT+AGG + chr6_1:16821607-16821626 None:intergenic 55.0%
GCGCATGTCTTTGCCGAACA+AGG - chr6_1:16821785-16821804 Msa0877420:CDS 55.0%
TGCCGAACAAGGTGCACGTA+TGG - chr6_1:16821796-16821815 Msa0877420:CDS 55.0%
CGAACAAGGTGCACGTATGG+TGG - chr6_1:16821799-16821818 Msa0877420:CDS 55.0%
CGCCGACATCCAAGATGAGT+TGG - chr6_1:16821826-16821845 Msa0877420:CDS 55.0%
AAAACATGCGGCACGTGCGA+TGG - chr6_1:16822340-16822359 Msa0877420:intron 55.0%
!! CACTGGCCTTGATCTTCGTG+TGG - chr6_1:16822694-16822713 Msa0877420:CDS 55.0%
GGCCTTGATCTTCGTGTGGA+TGG - chr6_1:16822698-16822717 Msa0877420:CDS 55.0%
!! ATTGTCACCGGAGGTGCCAG+CGG - chr6_1:16821746-16821765 Msa0877420:three_prime_UTR 60.0%
GTGTGCACTGCTAGCGTTGC+CGG - chr6_1:16822389-16822408 Msa0877420:intron 60.0%
GCTAGCGTTGCCGGTAGCAA+CGG - chr6_1:16822398-16822417 Msa0877420:intron 60.0%
!! ATTGTCACCGGAGGTGCCAG+CGG - chr6_1:16821746-16821765 Msa0877420:three_prime_UTR 60.0%
GTGTGCACTGCTAGCGTTGC+CGG - chr6_1:16822389-16822408 Msa0877420:intron 60.0%
GCTAGCGTTGCCGGTAGCAA+CGG - chr6_1:16822398-16822417 Msa0877420:intron 60.0%
GCTGGCACCTCCGGTGACAA+TGG + chr6_1:16821747-16821766 None:intergenic 65.0%
!! CAGCGGCATCGGCAAAGCGA+CGG - chr6_1:16821763-16821782 Msa0877420:three_prime_UTR 65.0%
ACATGCGGCACGTGCGATGG+TGG - chr6_1:16822343-16822362 Msa0877420:intron 65.0%
!! GATGGTGGACGGGTGCGTGA+GGG - chr6_1:16822358-16822377 Msa0877420:intron 65.0%
!! ATGGTGGACGGGTGCGTGAG+GGG - chr6_1:16822359-16822378 Msa0877420:intron 65.0%
GCTGGCACCTCCGGTGACAA+TGG + chr6_1:16821747-16821766 None:intergenic 65.0%
!! CAGCGGCATCGGCAAAGCGA+CGG - chr6_1:16821763-16821782 Msa0877420:three_prime_UTR 65.0%
ACATGCGGCACGTGCGATGG+TGG - chr6_1:16822343-16822362 Msa0877420:intron 65.0%
!! GATGGTGGACGGGTGCGTGA+GGG - chr6_1:16822358-16822377 Msa0877420:intron 65.0%
!! ATGGTGGACGGGTGCGTGAG+GGG - chr6_1:16822359-16822378 Msa0877420:intron 65.0%
!! ACCGGAGGTGCCAGCGGCAT+CGG - chr6_1:16821752-16821771 Msa0877420:three_prime_UTR 70.0%
! CGTCGCTTTGCCGATGCCGC+TGG + chr6_1:16821765-16821784 None:intergenic 70.0%
!! GCGGCACGTGCGATGGTGGA+CGG - chr6_1:16822347-16822366 Msa0877420:intron 70.0%
!! CGGCACGTGCGATGGTGGAC+GGG - chr6_1:16822348-16822367 Msa0877420:intron 70.0%
!! CGATGGTGGACGGGTGCGTG+AGG - chr6_1:16822357-16822376 Msa0877420:intron 70.0%
!! ACCGGAGGTGCCAGCGGCAT+CGG - chr6_1:16821752-16821771 Msa0877420:three_prime_UTR 70.0%
! CGTCGCTTTGCCGATGCCGC+TGG + chr6_1:16821765-16821784 None:intergenic 70.0%
!! GCGGCACGTGCGATGGTGGA+CGG - chr6_1:16822347-16822366 Msa0877420:intron 70.0%
!! CGGCACGTGCGATGGTGGAC+GGG - chr6_1:16822348-16822367 Msa0877420:intron 70.0%
!! CGATGGTGGACGGGTGCGTG+AGG - chr6_1:16822357-16822376 Msa0877420:intron 70.0%
GCCGATGCCGCTGGCACCTC+CGG + chr6_1:16821756-16821775 None:intergenic 75.0%
GCCGATGCCGCTGGCACCTC+CGG + chr6_1:16821756-16821775 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 16821605 16822937 16821605 ID=Msa0877420;Name=Msa0877420
chr6_1 mRNA 16821605 16822937 16821605 ID=Msa0877420-mRNA-1;Parent=Msa0877420;Name=Msa0877420-mRNA-1;_AED=0.35;_eAED=0.35;_QI=87|1|1|1|1|1|2|180|270
chr6_1 exon 16821605 16822324 16821605 ID=Msa0877420-mRNA-1:exon:4722;Parent=Msa0877420-mRNA-1
chr6_1 exon 16822578 16822937 16822578 ID=Msa0877420-mRNA-1:exon:4721;Parent=Msa0877420-mRNA-1
chr6_1 five_prime_UTR 16822851 16822937 16822851 ID=Msa0877420-mRNA-1:five_prime_utr;Parent=Msa0877420-mRNA-1
chr6_1 CDS 16822578 16822850 16822578 ID=Msa0877420-mRNA-1:cds;Parent=Msa0877420-mRNA-1
chr6_1 CDS 16821785 16822324 16821785 ID=Msa0877420-mRNA-1:cds;Parent=Msa0877420-mRNA-1
chr6_1 three_prime_UTR 16821605 16821784 16821605 ID=Msa0877420-mRNA-1:three_prime_utr;Parent=Msa0877420-mRNA-1
Gene Sequence

>Msa0877420

ATGGCAGAATCTTCACTCACTAACAGCAGTCTTAGGTTAGCAGGCAAAATAGCCATTGTCACCGGAGGTGCCAGCGGCATCGGCAAAGCGACGGCGCATGTCTTTGCCGAACAAGGTGCACGTATGGTGGTAATCGCCGACATCCAAGATGAGTTGGGCAATGAAGTGGCTGCATCTATTGGTGGCCATAGGTGCACCTATGTTCACTGTGACGTAGCAAATGAAGATCAAGTCAAAAATCTCGTTCAATCAACGGTCAAAACTTATGGACAGGTAGATATTATGTTTAGCAATGCTGGGATTGCAAGTCCATCTGATCAGACTGTGTTGGAATTCGACATTTCTCAAGCTGACCAGTTGTTCTCAGTTAACGTTCGAGGAATGGCATTGTGCGTAAAACATGCGGCACGTGCGATGGTGGACGGGTGCGTGAGGGGTAGCATTGTGTGCACTGCTAGCGTTGCCGGTAGCAACGGTAGCATGAAGTTAACAGATTACGTAATGTCGAAGCACGCAATAATAGGGTTGATGCGTTCAGCTAGTAAGCAACTTGCAAAGCATGGAATAAGGGTGAATTGTGTATCACCAAATGGATTAGCAACACCATTGACTATGAAATTGCTAGATGCAGGTGAAGAGACAGTTGATTTGATTTTTGGAGAATACAAGAGGTTGGAAGGAGTGGTTCTCAGCACTAAACATGTGGCAGATGCTGTGTTGTTCTTGGTATCCAATGAATCTGACTTTGTCACTGGCCTTGATCTTCGTGTGGATGGTAGCTTTCTTGATGGCAAATCTGAACTAGTATTTTAA

Protein sequence

>Msa0877420

MAESSLTNSSLRLAGKIAIVTGGASGIGKATAHVFAEQGARMVVIADIQDELGNEVAASIGGHRCTYVHCDVANEDQVKNLVQSTVKTYGQVDIMFSNAGIASPSDQTVLEFDISQADQLFSVNVRGMALCVKHAARAMVDGCVRGSIVCTASVAGSNGSMKLTDYVMSKHAIIGLMRSASKQLAKHGIRVNCVSPNGLATPLTMKLLDAGEETVDLIFGEYKRLEGVVLSTKHVADAVLFLVSNESDFVTGLDLRVDGSFLDGKSELVF*