AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0145950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0145950 MtrunA17_Chr1g0154751 99.320 147 1 0 3 149 67 213 3.90e-109 309
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0145950 AT1G45170.1 70.748 147 43 0 3 149 67 213 3.43e-78 231
Msa0145950 AT5G42960.1 67.347 147 47 1 3 149 68 213 2.10e-72 216
Msa0145950 AT1G45170.2 50.340 147 27 1 3 149 67 167 8.13e-44 142

Find 66 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAATTGATTGCCTATAAAT+TGG 0.165071 1_4:+5687857 Msa0145950:three_prime_UTR
GCGAATTATGGTGTTGAATC+TGG 0.218241 1_4:+5685242 Msa0145950:CDS
AGGGGATAACAGAACAATTT+TGG 0.234866 1_4:+5685181 Msa0145950:CDS
AATTATAGGATTCTGCAATA+TGG 0.241988 1_4:-5687840 None:intergenic
ATAAGGTTTGATATCTAGTT+TGG 0.262212 1_4:+5687669 Msa0145950:three_prime_UTR
ATTTATAGGCAATCAATTAT+AGG 0.279411 1_4:-5687854 None:intergenic
GAATAAAGTGCCCAATTTAT+AGG 0.281680 1_4:-5687868 None:intergenic
AATAAGGTTTCAGCGAATTA+TGG 0.297969 1_4:+5685230 Msa0145950:CDS
GGCTCCTCTGTGTTGCTGTT+GGG 0.309390 1_4:-5687993 None:intergenic
CAATTGTAGTCAAACCCTTA+TGG 0.311402 1_4:-5685292 None:intergenic
TTCAATTTATGAACACAGTT+AGG 0.317886 1_4:+5685117 Msa0145950:CDS
CATCCCTCCTCATAAGAAAA+AGG 0.320307 1_4:+5687938 Msa0145950:three_prime_UTR
GCTGTTTCGAGGAAAGTTTA+TGG 0.364076 1_4:+5685353 Msa0145950:CDS
CTTCTCCTCGGCCAAGTTAA+CGG 0.367147 1_4:-5687593 None:intergenic
TTCAAAATTCCATGTGGTCT+CGG 0.373502 1_4:-5687635 None:intergenic
TGTGTGGGACCCATCGAATA+AGG 0.383360 1_4:+5685214 Msa0145950:CDS
GAGGGATGCATGAATAATAT+TGG 0.392922 1_4:-5687923 None:intergenic
CAGACCACGAGTAAGAAGTT+AGG 0.393154 1_4:+5685401 Msa0145950:CDS
TAAGGTTTGATATCTAGTTT+GGG 0.410066 1_4:+5687670 Msa0145950:three_prime_UTR
GGTTGTGGCGTCCGTTAACT+TGG 0.413701 1_4:+5687582 Msa0145950:intron
TAATTGATTGCCTATAAATT+GGG 0.414424 1_4:+5687858 Msa0145950:three_prime_UTR
CGGCTCCTCTGTGTTGCTGT+TGG 0.426162 1_4:-5687994 None:intergenic
ATTATAGGATTCTGCAATAT+GGG 0.432310 1_4:-5687839 None:intergenic
TAACCTACATACACAGCAAA+GGG 0.443140 1_4:+5685162 Msa0145950:CDS
TGAGTTCCTGCTGTTTGCGC+GGG 0.443439 1_4:-5688044 None:intergenic
TGTGGTCTCGGCACTAAGCT+TGG 0.445547 1_4:-5687623 None:intergenic
GAAGTATAGCTATGTCCATA+AGG 0.446086 1_4:+5685277 Msa0145950:CDS
TCAATTTATGAACACAGTTA+GGG 0.463428 1_4:+5685118 Msa0145950:CDS
TCAAGTATACAATAATGAAA+TGG 0.464664 1_4:-5687726 None:intergenic
GTGGTCTCGGCACTAAGCTT+GGG 0.465342 1_4:-5687622 None:intergenic
AAGTATAGCTATGTCCATAA+GGG 0.470434 1_4:+5685278 Msa0145950:CDS
TGCTGTTTGCGCGGGCCTGT+AGG 0.474058 1_4:-5688036 None:intergenic
CGAATTATGGTGTTGAATCT+GGG 0.476174 1_4:+5685243 Msa0145950:CDS
TACAGGCCCGCGCAAACAGC+AGG 0.477584 1_4:+5688038 Msa0145950:three_prime_UTR
AGTTAGGGTTTGAGTGGTCG+AGG 0.482159 1_4:+5685417 Msa0145950:CDS
ATCAAATGAAAAGTTTAAAG+TGG 0.483426 1_4:-5687793 None:intergenic
CTTGCAAGTATTGATTGACT+TGG 0.493911 1_4:-5688150 None:intergenic
ATCCCCTTTGCTGTGTATGT+AGG 0.496851 1_4:-5685165 None:intergenic
GCTCCTCTGTGTTGCTGTTG+GGG 0.497041 1_4:-5687992 None:intergenic
AGACCACGAGTAAGAAGTTA+GGG 0.497058 1_4:+5685402 Msa0145950:CDS
TTCGCTGAAACCTTATTCGA+TGG 0.499631 1_4:-5685224 None:intergenic
GTCGAGGAATTCGAAACAAA+GGG 0.505059 1_4:+5685433 Msa0145950:CDS
TTATGGTGATGACTCATTGA+AGG 0.523909 1_4:+5685370 Msa0145950:CDS
TACAGAATAACTTCATGAGA+AGG 0.528811 1_4:-5688094 None:intergenic
GGCGTCCGTTAACTTGGCCG+AGG 0.541591 1_4:+5687588 Msa0145950:CDS
TGTATGTAGGTTAAATTCAA+CGG 0.544412 1_4:-5685152 None:intergenic
AGCTTAGTGCCGAGACCACA+TGG 0.549160 1_4:+5687626 Msa0145950:CDS
TTGCAAGTATTGATTGACTT+GGG 0.550118 1_4:-5688149 None:intergenic
TCGCTGAAACCTTATTCGAT+GGG 0.554144 1_4:-5685223 None:intergenic
TTCTTAGCAACATCATAACT+AGG 0.560239 1_4:-5685317 None:intergenic
GTTTGATATCTAGTTTGGGA+TGG 0.565984 1_4:+5687674 Msa0145950:three_prime_UTR
TTGAGTTCCTGCTGTTTGCG+CGG 0.574735 1_4:-5688045 None:intergenic
ACAGAATAACTTCATGAGAA+GGG 0.575988 1_4:-5688093 None:intergenic
TTTGGACGGAACATTTGTGT+GGG 0.592902 1_4:+5685199 Msa0145950:CDS
GGTCGAGGAATTCGAAACAA+AGG 0.607936 1_4:+5685432 Msa0145950:CDS
TTAACCTACATACACAGCAA+AGG 0.618005 1_4:+5685161 Msa0145950:CDS
AAATGGCAAAATATGCCTCA+TGG 0.624715 1_4:-5687709 None:intergenic
GTAAGAAGTTAGGGTTTGAG+TGG 0.628064 1_4:+5685411 Msa0145950:CDS
TGATGTTGCTAAGAATGCGT+GGG 0.641670 1_4:+5685325 Msa0145950:CDS
AAACCCTAACTTCTTACTCG+TGG 0.657874 1_4:-5685405 None:intergenic
ATGATGTTGCTAAGAATGCG+TGG 0.662892 1_4:+5685324 Msa0145950:CDS
CTACATTTCAAAATTCCATG+TGG 0.674623 1_4:-5687641 None:intergenic
AACCTACATACACAGCAAAG+GGG 0.729150 1_4:+5685163 Msa0145950:CDS
TCGAGGAATTCGAAACAAAG+GGG 0.745078 1_4:+5685434 Msa0145950:CDS
CTTCCCCAACAGCAACACAG+AGG 0.753282 1_4:+5687989 Msa0145950:three_prime_UTR
TCATGTAATGAACTACTCTG+TGG 0.767494 1_4:+5687760 Msa0145950:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAATTAACAAAATTATT+TGG + chr1_4:5685787-5685806 Msa0145950:intron 10.0%
!!! ATTCATGTTTTTTTTTTTTT+GGG - chr1_4:5687014-5687033 None:intergenic 10.0%
!! TTAACAAAACTATTTAAAAA+AGG - chr1_4:5687058-5687077 None:intergenic 10.0%
!!! ATAATATTTTTCTTTTTTGA+AGG + chr1_4:5687319-5687338 Msa0145950:intron 10.0%
!!! TATTCTTTTTTTTTTTTGAA+TGG + chr1_4:5687900-5687919 Msa0145950:three_prime_UTR 10.0%
!!! TTTTTTTTTTTTTTTGTGTG+TGG + chr1_4:5685504-5685523 Msa0145950:intron 15.0%
!!! AAAATCTTAGGTTTTATTTA+CGG - chr1_4:5685685-5685704 None:intergenic 15.0%
!! GAGTTATATATAAAAATCTT+AGG - chr1_4:5685697-5685716 None:intergenic 15.0%
!!! TTGATTTTAGTATATGTTAT+TGG + chr1_4:5685723-5685742 Msa0145950:intron 15.0%
!! ATATTATACCAATGTATTAT+TGG - chr1_4:5685975-5685994 None:intergenic 15.0%
!!! AGTTTTTATTCCTAAATAAA+TGG + chr1_4:5686477-5686496 Msa0145950:intron 15.0%
!!! GATTCATGTTTTTTTTTTTT+TGG - chr1_4:5687015-5687034 None:intergenic 15.0%
!!! ATGAATTTTAGAATAGTTTT+TGG + chr1_4:5687199-5687218 Msa0145950:intron 15.0%
!!! TGAATTTTAGAATAGTTTTT+GGG + chr1_4:5687200-5687219 Msa0145950:intron 15.0%
!!! TTTGATTATGGTTTTGAATT+AGG + chr1_4:5685529-5685548 Msa0145950:intron 20.0%
!!! TTGATTATGGTTTTGAATTA+GGG + chr1_4:5685530-5685549 Msa0145950:intron 20.0%
!! TACTTAGTAAGAAACTAATT+TGG - chr1_4:5686070-5686089 None:intergenic 20.0%
!! ATTATAGTAATATGCTTAGA+AGG + chr1_4:5686093-5686112 Msa0145950:intron 20.0%
!!! AAAATGTACTGACATTATTT+TGG - chr1_4:5686342-5686361 None:intergenic 20.0%
!!! AGTACATTTTATGAAGAAAT+TGG + chr1_4:5686352-5686371 Msa0145950:intron 20.0%
!!! ATTTTATGAAGAAATTGGTT+GGG + chr1_4:5686357-5686376 Msa0145950:intron 20.0%
!! CAAATTCTATCCATTTATTT+AGG - chr1_4:5686490-5686509 None:intergenic 20.0%
!!! TAAATGGATAGAATTTGTTT+AGG + chr1_4:5686493-5686512 Msa0145950:intron 20.0%
!!! AAATGGATAGAATTTGTTTA+GGG + chr1_4:5686494-5686513 Msa0145950:intron 20.0%
!!! TTTGAAATGTAGTTTTCATA+AGG + chr1_4:5687652-5687671 Msa0145950:exon 20.0%
!! TCAAGTATACAATAATGAAA+TGG - chr1_4:5687729-5687748 None:intergenic 20.0%
!! ATCAAATGAAAAGTTTAAAG+TGG - chr1_4:5687796-5687815 None:intergenic 20.0%
!! ATTTATAGGCAATCAATTAT+AGG - chr1_4:5687857-5687876 None:intergenic 20.0%
!! ATAATTGATTGCCTATAAAT+TGG + chr1_4:5687857-5687876 Msa0145950:three_prime_UTR 20.0%
!! TAATTGATTGCCTATAAATT+GGG + chr1_4:5687858-5687877 Msa0145950:three_prime_UTR 20.0%
!!! TTTATGTGTTTTTGTTGAAT+CGG + chr1_4:5688215-5688234 Msa0145950:three_prime_UTR 20.0%
! TTCAATTTATGAACACAGTT+AGG + chr1_4:5685117-5685136 Msa0145950:CDS 25.0%
! TCAATTTATGAACACAGTTA+GGG + chr1_4:5685118-5685137 Msa0145950:CDS 25.0%
! TGTATGTAGGTTAAATTCAA+CGG - chr1_4:5685155-5685174 None:intergenic 25.0%
! GCATTTAACCAATAATACAT+TGG + chr1_4:5685964-5685983 Msa0145950:intron 25.0%
!!! AGATGTGTGAGTTTTTTAAA+GGG + chr1_4:5686142-5686161 Msa0145950:intron 25.0%
! TTCATTGTGATTCTTCATAT+TGG + chr1_4:5686178-5686197 Msa0145950:intron 25.0%
! CTTCTTAAATTCTTATTGTG+TGG - chr1_4:5686215-5686234 None:intergenic 25.0%
! CACACAATAAGAATTTAAGA+AGG + chr1_4:5686213-5686232 Msa0145950:intron 25.0%
! TTCATATGTATGTATGAAGA+CGG - chr1_4:5686262-5686281 None:intergenic 25.0%
!! CATTTTATGAAGAAATTGGT+TGG + chr1_4:5686356-5686375 Msa0145950:intron 25.0%
!! ATTTGTTTAGGGTTGAATAT+AGG + chr1_4:5686505-5686524 Msa0145950:intron 25.0%
! ATAAGGTTTGATATCTAGTT+TGG + chr1_4:5687669-5687688 Msa0145950:three_prime_UTR 25.0%
!! TAAGGTTTGATATCTAGTTT+GGG + chr1_4:5687670-5687689 Msa0145950:three_prime_UTR 25.0%
! ATTATAGGATTCTGCAATAT+GGG - chr1_4:5687842-5687861 None:intergenic 25.0%
! AATTATAGGATTCTGCAATA+TGG - chr1_4:5687843-5687862 None:intergenic 25.0%
!!! AAGTAGCTGCTTTTATTTTT+TGG - chr1_4:5688071-5688090 None:intergenic 25.0%
!!! TTATGTGTTTTTGTTGAATC+GGG + chr1_4:5688216-5688235 Msa0145950:three_prime_UTR 25.0%
! GATAACAGAACAATTTTGGA+CGG + chr1_4:5685185-5685204 Msa0145950:CDS 30.0%
AATAAGGTTTCAGCGAATTA+TGG + chr1_4:5685230-5685249 Msa0145950:CDS 30.0%
AAGTATAGCTATGTCCATAA+GGG + chr1_4:5685278-5685297 Msa0145950:CDS 30.0%
TTCTTAGCAACATCATAACT+AGG - chr1_4:5685320-5685339 None:intergenic 30.0%
!!! TTGTGTGTGGATTTTGATTA+TGG + chr1_4:5685517-5685536 Msa0145950:intron 30.0%
TTGCAATTGTGGTTGAAATA+TGG + chr1_4:5685616-5685635 Msa0145950:intron 30.0%
!!! GTGATTACAATTCTGGTTTT+TGG + chr1_4:5685764-5685783 Msa0145950:intron 30.0%
GAACATTGGATTGATATCTA+TGG + chr1_4:5685854-5685873 Msa0145950:intron 30.0%
! AAACTAATTTGGAGTAATCC+CGG - chr1_4:5686059-5686078 None:intergenic 30.0%
TAATATGCTTAGAAGGTTGA+TGG + chr1_4:5686100-5686119 Msa0145950:intron 30.0%
!!! GAGATGTGTGAGTTTTTTAA+AGG + chr1_4:5686141-5686160 Msa0145950:intron 30.0%
! AGGACGTTTTACTTTATCTT+TGG + chr1_4:5686300-5686319 Msa0145950:intron 30.0%
! ACGTTTTACTTTATCTTTGG+AGG + chr1_4:5686303-5686322 Msa0145950:intron 30.0%
! CGTTTTACTTTATCTTTGGA+GGG + chr1_4:5686304-5686323 Msa0145950:intron 30.0%
!! GTTTTACTTTATCTTTGGAG+GGG + chr1_4:5686305-5686324 Msa0145950:intron 30.0%
GAATCAATTTCCAACTTCTT+TGG + chr1_4:5686420-5686439 Msa0145950:intron 30.0%
TGAAATAGCCAATACTTTAG+TGG + chr1_4:5686566-5686585 Msa0145950:intron 30.0%
! TGCTTGAAATCGATTTCAAA+TGG + chr1_4:5686791-5686810 Msa0145950:intron 30.0%
! TTTCAAATGGTAATGAAGTG+TGG + chr1_4:5686804-5686823 Msa0145950:intron 30.0%
GTTGAAGAAGATAGATGATT+GGG + chr1_4:5686894-5686913 Msa0145950:intron 30.0%
! TAAAACCCAACTTAATGGAT+CGG - chr1_4:5686938-5686957 None:intergenic 30.0%
CAAGATAAAACCCAACTTAA+TGG - chr1_4:5686943-5686962 None:intergenic 30.0%
!!! CATTAAGTTGGGTTTTATCT+TGG + chr1_4:5686941-5686960 Msa0145950:intron 30.0%
TTTGGGTCAAATTTCCTTTA+CGG - chr1_4:5686997-5687016 None:intergenic 30.0%
TTTGTTCGAAAGACTCATAT+AGG + chr1_4:5687236-5687255 Msa0145950:intron 30.0%
TTGTTCGAAAGACTCATATA+GGG + chr1_4:5687237-5687256 Msa0145950:intron 30.0%
CTACATTTCAAAATTCCATG+TGG - chr1_4:5687644-5687663 None:intergenic 30.0%
! GAATAAAGTGCCCAATTTAT+AGG - chr1_4:5687871-5687890 None:intergenic 30.0%
! TATCCTTTTTCTTATGAGGA+GGG - chr1_4:5687944-5687963 None:intergenic 30.0%
!!! GAGTTTTTTCTTTCTGTTAG+CGG - chr1_4:5688017-5688036 None:intergenic 30.0%
ACAGAATAACTTCATGAGAA+GGG - chr1_4:5688096-5688115 None:intergenic 30.0%
TACAGAATAACTTCATGAGA+AGG - chr1_4:5688097-5688116 None:intergenic 30.0%
!! TTGCAAGTATTGATTGACTT+GGG - chr1_4:5688152-5688171 None:intergenic 30.0%
TTAACCTACATACACAGCAA+AGG + chr1_4:5685161-5685180 Msa0145950:CDS 35.0%
TAACCTACATACACAGCAAA+GGG + chr1_4:5685162-5685181 Msa0145950:CDS 35.0%
! AGGGGATAACAGAACAATTT+TGG + chr1_4:5685181-5685200 Msa0145950:CDS 35.0%
! CGAATTATGGTGTTGAATCT+GGG + chr1_4:5685243-5685262 Msa0145950:CDS 35.0%
GAAGTATAGCTATGTCCATA+AGG + chr1_4:5685277-5685296 Msa0145950:CDS 35.0%
CAATTGTAGTCAAACCCTTA+TGG - chr1_4:5685295-5685314 None:intergenic 35.0%
! TTATGGTGATGACTCATTGA+AGG + chr1_4:5685370-5685389 Msa0145950:CDS 35.0%
!! GAAACAAAGGGGTTGTTTTA+AGG + chr1_4:5685445-5685464 Msa0145950:CDS 35.0%
!!! ATGGTTTTGAATTAGGGTTG+AGG + chr1_4:5685536-5685555 Msa0145950:intron 35.0%
TGAATTAGGGTTGAGGAATT+TGG + chr1_4:5685543-5685562 Msa0145950:intron 35.0%
! GTAGAAAATTGTTGTTGACG+TGG + chr1_4:5685593-5685612 Msa0145950:intron 35.0%
TTGTGGTTGAAATATGGTTG+TGG + chr1_4:5685622-5685641 Msa0145950:intron 35.0%
CAGAAGAAAGACAAAAGACA+TGG - chr1_4:5685916-5685935 None:intergenic 35.0%
! AACTAATTTGGAGTAATCCC+GGG - chr1_4:5686058-5686077 None:intergenic 35.0%
! ATGGCTATGTTTGAGATTGA+GGG + chr1_4:5686119-5686138 Msa0145950:intron 35.0%
! TTTGAGGAGGTACAAAACAA+CGG + chr1_4:5686380-5686399 Msa0145950:intron 35.0%
TCAATTTCCAACTTCTTTGG+TGG + chr1_4:5686423-5686442 Msa0145950:intron 35.0%
ATTCATACCACCAAAGAAGT+TGG - chr1_4:5686433-5686452 None:intergenic 35.0%
CAAGACTTCCACTAAAGTAT+TGG - chr1_4:5686577-5686596 None:intergenic 35.0%
AACATAATTCGCTGGGTTTA+TGG + chr1_4:5686605-5686624 Msa0145950:intron 35.0%
ACATAATTCGCTGGGTTTAT+GGG + chr1_4:5686606-5686625 Msa0145950:intron 35.0%
AAAGCTTACGTAAACGTTCA+TGG - chr1_4:5686759-5686778 None:intergenic 35.0%
GGTTGAAGAAGATAGATGAT+TGG + chr1_4:5686893-5686912 Msa0145950:intron 35.0%
! AAAACCCAACTTAATGGATC+GGG - chr1_4:5686937-5686956 None:intergenic 35.0%
TGAGAAGAATTCGGTACATA+CGG - chr1_4:5687440-5687459 None:intergenic 35.0%
ACACAATTCGCAATTCGTTA+TGG - chr1_4:5687492-5687511 None:intergenic 35.0%
AATTGCGAATTGTGTGACTA+TGG + chr1_4:5687497-5687516 Msa0145950:intron 35.0%
TTCAAAATTCCATGTGGTCT+CGG - chr1_4:5687638-5687657 None:intergenic 35.0%
! GTTTGATATCTAGTTTGGGA+TGG + chr1_4:5687674-5687693 Msa0145950:three_prime_UTR 35.0%
AAATGGCAAAATATGCCTCA+TGG - chr1_4:5687712-5687731 None:intergenic 35.0%
TCATGTAATGAACTACTCTG+TGG + chr1_4:5687760-5687779 Msa0145950:three_prime_UTR 35.0%
GAGGGATGCATGAATAATAT+TGG - chr1_4:5687926-5687945 None:intergenic 35.0%
! CTATCCTTTTTCTTATGAGG+AGG - chr1_4:5687945-5687964 None:intergenic 35.0%
CTCCTCATAAGAAAAAGGAT+AGG + chr1_4:5687943-5687962 Msa0145950:three_prime_UTR 35.0%
! CTCCTATCCTTTTTCTTATG+AGG - chr1_4:5687948-5687967 None:intergenic 35.0%
CAGAAAGAAAAAACTCCTAC+AGG + chr1_4:5688021-5688040 Msa0145950:three_prime_UTR 35.0%
!!! CCTAGCATGTTTTAGAGAAA+AGG - chr1_4:5688123-5688142 None:intergenic 35.0%
!!! CCTTTTCTCTAAAACATGCT+AGG + chr1_4:5688120-5688139 Msa0145950:three_prime_UTR 35.0%
!! CTTGCAAGTATTGATTGACT+TGG - chr1_4:5688153-5688172 None:intergenic 35.0%
AACCTACATACACAGCAAAG+GGG + chr1_4:5685163-5685182 Msa0145950:CDS 40.0%
! TTTTGGACGGAACATTTGTG+TGG + chr1_4:5685198-5685217 Msa0145950:CDS 40.0%
TTTGGACGGAACATTTGTGT+GGG + chr1_4:5685199-5685218 Msa0145950:CDS 40.0%
TCGCTGAAACCTTATTCGAT+GGG - chr1_4:5685226-5685245 None:intergenic 40.0%
TTCGCTGAAACCTTATTCGA+TGG - chr1_4:5685227-5685246 None:intergenic 40.0%
! GCGAATTATGGTGTTGAATC+TGG + chr1_4:5685242-5685261 Msa0145950:CDS 40.0%
ATGATGTTGCTAAGAATGCG+TGG + chr1_4:5685324-5685343 Msa0145950:CDS 40.0%
TGATGTTGCTAAGAATGCGT+GGG + chr1_4:5685325-5685344 Msa0145950:CDS 40.0%
! GCTGTTTCGAGGAAAGTTTA+TGG + chr1_4:5685353-5685372 Msa0145950:CDS 40.0%
AGACCACGAGTAAGAAGTTA+GGG + chr1_4:5685402-5685421 Msa0145950:CDS 40.0%
AAACCCTAACTTCTTACTCG+TGG - chr1_4:5685408-5685427 None:intergenic 40.0%
GTAAGAAGTTAGGGTTTGAG+TGG + chr1_4:5685411-5685430 Msa0145950:CDS 40.0%
GTCGAGGAATTCGAAACAAA+GGG + chr1_4:5685433-5685452 Msa0145950:CDS 40.0%
TCGAGGAATTCGAAACAAAG+GGG + chr1_4:5685434-5685453 Msa0145950:CDS 40.0%
TGTGGTACAGCTTGATGTTT+CGG + chr1_4:5685640-5685659 Msa0145950:intron 40.0%
TGATGTTTCGGCGACTATAA+TGG + chr1_4:5685652-5685671 Msa0145950:intron 40.0%
GCTGCATGTGATTACAATTC+TGG + chr1_4:5685757-5685776 Msa0145950:intron 40.0%
GCATCAGTGACTTAGAACAT+TGG + chr1_4:5685840-5685859 Msa0145950:intron 40.0%
! GATGGCTATGTTTGAGATTG+AGG + chr1_4:5686118-5686137 Msa0145950:intron 40.0%
TAAAGTAAAACGTCCTCCCT+CGG - chr1_4:5686296-5686315 None:intergenic 40.0%
GAAGAAATTGGTTGGGTTTG+AGG + chr1_4:5686364-5686383 Msa0145950:intron 40.0%
! TTGAGGAGGTACAAAACAAC+GGG + chr1_4:5686381-5686400 Msa0145950:intron 40.0%
AGGTACAAAACAACGGGATT+TGG + chr1_4:5686387-5686406 Msa0145950:intron 40.0%
GGTACAAAACAACGGGATTT+GGG + chr1_4:5686388-5686407 Msa0145950:intron 40.0%
GTACAAAACAACGGGATTTG+GGG + chr1_4:5686389-5686408 Msa0145950:intron 40.0%
AGCAGAGTAACATAATTCGC+TGG + chr1_4:5686597-5686616 Msa0145950:intron 40.0%
GCAGAGTAACATAATTCGCT+GGG + chr1_4:5686598-5686617 Msa0145950:intron 40.0%
!!! TCTTTTGCGTATTGATTCGC+TGG + chr1_4:5686666-5686685 Msa0145950:intron 40.0%
TTGAGACTGTTCAACCGTAA+AGG + chr1_4:5686980-5686999 Msa0145950:intron 40.0%
!! AGTTTTTGGGAAGTGAACAC+TGG + chr1_4:5687213-5687232 Msa0145950:intron 40.0%
AGAAGAATTCGGTACATACG+GGG - chr1_4:5687438-5687457 None:intergenic 40.0%
GAGAAGAATTCGGTACATAC+GGG - chr1_4:5687439-5687458 None:intergenic 40.0%
TACGCGACATGAGAAGAATT+CGG - chr1_4:5687449-5687468 None:intergenic 40.0%
! CTTGGGAATTTTCTTCTCCT+CGG - chr1_4:5687608-5687627 None:intergenic 40.0%
CATCCCTCCTCATAAGAAAA+AGG + chr1_4:5687938-5687957 Msa0145950:three_prime_UTR 40.0%
! ATCCCCTTTGCTGTGTATGT+AGG - chr1_4:5685168-5685187 None:intergenic 45.0%
CAGACCACGAGTAAGAAGTT+AGG + chr1_4:5685401-5685420 Msa0145950:CDS 45.0%
GGTCGAGGAATTCGAAACAA+AGG + chr1_4:5685432-5685451 Msa0145950:CDS 45.0%
TGTTGACGTGGTTGCAATTG+TGG + chr1_4:5685605-5685624 Msa0145950:intron 45.0%
CCGGGAGAAAAACAAGTACA+CGG - chr1_4:5686040-5686059 None:intergenic 45.0%
!! CCGTGTACTTGTTTTTCTCC+CGG + chr1_4:5686037-5686056 Msa0145950:intron 45.0%
!! CGTGTACTTGTTTTTCTCCC+GGG + chr1_4:5686038-5686057 Msa0145950:intron 45.0%
TATGAACAGAGAATCCTCCG+AGG + chr1_4:5686276-5686295 Msa0145950:intron 45.0%
ATGAACAGAGAATCCTCCGA+GGG + chr1_4:5686277-5686296 Msa0145950:intron 45.0%
GAAATTGGTTGGGTTTGAGG+AGG + chr1_4:5686367-5686386 Msa0145950:intron 45.0%
TTTATGGGAGAACCGCGAAT+TGG + chr1_4:5686621-5686640 Msa0145950:intron 45.0%
TACGCAAAAGAACCGCGAAT+CGG - chr1_4:5686657-5686676 None:intergenic 45.0%
TTCATGGAATCGCCGTACTT+CGG - chr1_4:5686724-5686743 None:intergenic 45.0%
CGATTCCATGAACGTGTTTG+AGG + chr1_4:5686732-5686751 Msa0145950:intron 45.0%
ATGGTCCTCAAACACGTTCA+TGG - chr1_4:5686740-5686759 None:intergenic 45.0%
TGGATCGGGTGCAAACATAT+GGG - chr1_4:5686923-5686942 None:intergenic 45.0%
ATGGATCGGGTGCAAACATA+TGG - chr1_4:5686924-5686943 None:intergenic 45.0%
TTGCACCCGATCCATTAAGT+TGG + chr1_4:5686929-5686948 Msa0145950:intron 45.0%
TGCACCCGATCCATTAAGTT+GGG + chr1_4:5686930-5686949 Msa0145950:intron 45.0%
GAAGAATTCGGTACATACGG+GGG - chr1_4:5687437-5687456 None:intergenic 45.0%
ATTCGTTATGGTACGCGGTA+CGG - chr1_4:5687480-5687499 None:intergenic 45.0%
TCGCAATTCGTTATGGTACG+CGG - chr1_4:5687485-5687504 None:intergenic 45.0%
CTATCAGCTATGTCTCTTGC+AGG + chr1_4:5687561-5687580 Msa0145950:intron 45.0%
!! CTAGTTTGGGATGGCTTTTG+TGG + chr1_4:5687683-5687702 Msa0145950:three_prime_UTR 45.0%
AGCGCAACAGCAAAAAAAGC+AGG + chr1_4:5687966-5687985 Msa0145950:three_prime_UTR 45.0%
!!! TCATTTATTTTTATTTTTAT+TGG - chr1_4:5687183-5687202 None:intergenic 5.0%
TGTGTGGGACCCATCGAATA+AGG + chr1_4:5685214-5685233 Msa0145950:CDS 50.0%
!!! CGTGGGATTTTGCTGTTTCG+AGG + chr1_4:5685342-5685361 Msa0145950:CDS 50.0%
AGTTAGGGTTTGAGTGGTCG+AGG + chr1_4:5685417-5685436 Msa0145950:CDS 50.0%
TGATTCGCTGGAATTCGTGC+CGG + chr1_4:5686678-5686697 Msa0145950:intron 50.0%
CAACTCAGCGAACCGAAGTA+CGG + chr1_4:5686709-5686728 Msa0145950:intron 50.0%
! CCATGTGCTGTGTTTTCCTG+CGG + chr1_4:5686851-5686870 Msa0145950:intron 50.0%
! GGCTGCACTTCTGTTTTGCT+AGG + chr1_4:5686872-5686891 Msa0145950:intron 50.0%
ATCGGGTGCAAACATATGGG+TGG - chr1_4:5686920-5686939 None:intergenic 50.0%
ATTCGGTACATACGGGGGTA+TGG - chr1_4:5687432-5687451 None:intergenic 50.0%
TTCGTTATGGTACGCGGTAC+GGG - chr1_4:5687479-5687498 None:intergenic 50.0%
GCTATGTCTCTTGCAGGTTG+TGG + chr1_4:5687567-5687586 Msa0145950:intron 50.0%
CTTCTCCTCGGCCAAGTTAA+CGG - chr1_4:5687596-5687615 None:intergenic 50.0%
! TGGCTTTTGTGGTCACCATG+AGG + chr1_4:5687694-5687713 Msa0145950:three_prime_UTR 50.0%
! TTGAGTTCCTGCTGTTTGCG+CGG - chr1_4:5688048-5688067 None:intergenic 50.0%
AACAGAGAATCCTCCGAGGG+AGG + chr1_4:5686280-5686299 Msa0145950:intron 55.0%
AGTAAAACGTCCTCCCTCGG+AGG - chr1_4:5686293-5686312 None:intergenic 55.0%
TCGCTGAGTTGCGCGAATTC+CGG - chr1_4:5686700-5686719 None:intergenic 55.0%
CCGCAGGAAAACACAGCACA+TGG - chr1_4:5686854-5686873 None:intergenic 55.0%
! CAAAACAGAAGTGCAGCCGC+AGG - chr1_4:5686870-5686889 None:intergenic 55.0%
! CATACGGGGGTATGGAGCTT+CGG - chr1_4:5687424-5687443 None:intergenic 55.0%
GGTTGTGGCGTCCGTTAACT+TGG + chr1_4:5687582-5687601 Msa0145950:intron 55.0%
GTGGTCTCGGCACTAAGCTT+GGG - chr1_4:5687625-5687644 None:intergenic 55.0%
TGTGGTCTCGGCACTAAGCT+TGG - chr1_4:5687626-5687645 None:intergenic 55.0%
! AGCTTAGTGCCGAGACCACA+TGG + chr1_4:5687626-5687645 Msa0145950:CDS 55.0%
CTTCCCCAACAGCAACACAG+AGG + chr1_4:5687989-5688008 Msa0145950:three_prime_UTR 55.0%
! GCTCCTCTGTGTTGCTGTTG+GGG - chr1_4:5687995-5688014 None:intergenic 55.0%
! GGCTCCTCTGTGTTGCTGTT+GGG - chr1_4:5687996-5688015 None:intergenic 55.0%
! TGAGTTCCTGCTGTTTGCGC+GGG - chr1_4:5688047-5688066 None:intergenic 55.0%
GGTACGCGCGAACCAATTCG+CGG - chr1_4:5686636-5686655 None:intergenic 60.0%
! CGGCTCCTCTGTGTTGCTGT+TGG - chr1_4:5687997-5688016 None:intergenic 60.0%
!! GGTTCGCGCGTACCGATTCG+CGG + chr1_4:5686642-5686661 Msa0145950:intron 65.0%
TGGTACGCGGTACGGGTACG+CGG - chr1_4:5687472-5687491 None:intergenic 65.0%
! GGCGTCCGTTAACTTGGCCG+AGG + chr1_4:5687588-5687607 Msa0145950:CDS 65.0%
! TGCTGTTTGCGCGGGCCTGT+AGG - chr1_4:5688039-5688058 None:intergenic 65.0%
TACAGGCCCGCGCAAACAGC+AGG + chr1_4:5688038-5688057 Msa0145950:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 5685098 5688247 5685098 ID=Msa0145950;Name=Msa0145950
chr1_4 mRNA 5685098 5688247 5685098 ID=Msa0145950-mRNA-1;Parent=Msa0145950;Name=Msa0145950-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.5|1|1|1|2|584|149
chr1_4 exon 5685098 5685466 5685098 ID=Msa0145950-mRNA-1:exon:2403;Parent=Msa0145950-mRNA-1
chr1_4 exon 5687583 5688247 5687583 ID=Msa0145950-mRNA-1:exon:2404;Parent=Msa0145950-mRNA-1
chr1_4 CDS 5685098 5685466 5685098 ID=Msa0145950-mRNA-1:cds;Parent=Msa0145950-mRNA-1
chr1_4 CDS 5687583 5687663 5687583 ID=Msa0145950-mRNA-1:cds;Parent=Msa0145950-mRNA-1
chr1_4 three_prime_UTR 5687664 5688247 5687664 ID=Msa0145950-mRNA-1:three_prime_utr;Parent=Msa0145950-mRNA-1
Gene Sequence

>Msa0145950

TTGGTGCAGGATTTTAGGTTTCAATTTATGAACACAGTTAGGGTTGCTGATAAACCGTTGAATTTAACCTACATACACAGCAAAGGGGATAACAGAACAATTTTGGACGGAACATTTGTGTGGGACCCATCGAATAAGGTTTCAGCGAATTATGGTGTTGAATCTGGGAATTGTAGATTGAAGTATAGCTATGTCCATAAGGGTTTGACTACAATTGAACCTAGTTATGATGTTGCTAAGAATGCGTGGGATTTTGCTGTTTCGAGGAAAGTTTATGGTGATGACTCATTGAAGGCGACGTATCAGACCACGAGTAAGAAGTTAGGGTTTGAGTGGTCGAGGAATTCGAAACAAAGGGGTTGTTTTAAGGTTGTGGCGTCCGTTAACTTGGCCGAGGAGAAGAAAATTCCCAAGCTTAGTGCCGAGACCACATGGAATTTTGAAATGTAG

Protein sequence

>Msa0145950

LVQDFRFQFMNTVRVADKPLNLTYIHSKGDNRTILDGTFVWDPSNKVSANYGVESGNCRLKYSYVHKGLTTIEPSYDVAKNAWDFAVSRKVYGDDSLKATYQTTSKKLGFEWSRNSKQRGCFKVVASVNLAEEKKIPKLSAETTWNFEM*