AlfalfaGEDB | Msa0145950

M. sativa cultivar zhongmu-4 / Msa0145950

KEGG: -
GO: GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005261 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0009507 GO:0009513 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0015075 GO:0015267 GO:0015288 GO:0015318 GO:0016020 GO:0016021 GO:0019867 GO:0022803 GO:0022829 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032879 GO:0032991 GO:0034220 GO:0034425 GO:0034426 GO:0034762 GO:0034765 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046930 GO:0050789 GO:0051049 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0098588 GO:0098655 GO:0098796 GO:0098805
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0145950	XP_013466070.1	99.320	147	1	0	3	149	67	213	4.24e-105	309

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0145950	sp\|O49929\|OEP24_PEA	87.075	147	19	0	3	149	67	213	1.59e-94	275

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0145950	A0A072VDK2	99.320	147	1	0	3	149	67	213	2.02e-105	309

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0145950	-0.869019	4.235802e-66	-8.615850e-47
Msa0001950	Msa0145950	0.837130	6.234040e-57	-8.615850e-47
Msa0003470	Msa0145950	0.896325	4.110216e-76	-8.615850e-47
Msa0006820	Msa0145950	0.804084	2.559588e-49	-8.615850e-47
Msa0007450	Msa0145950	0.823454	1.373178e-53	-8.615850e-47
Msa0008830	Msa0145950	0.821521	3.863032e-53	-8.615850e-47
Msa0008850	Msa0145950	0.866408	2.913900e-65	-8.615850e-47
Msa0011720	Msa0145950	0.842411	2.629333e-58	-8.615850e-47
Msa0011850	Msa0145950	0.805073	1.591603e-49	-8.615850e-47
Msa0012460	Msa0145950	0.805769	1.137455e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0145950	MtrunA17_Chr1g0154751	99.320	147	1	0	3	149	67	213	3.90e-109	309

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0145950	AT1G45170.1	70.748	147	43	0	3	149	67	213	3.43e-78	231
Msa0145950	AT5G42960.1	67.347	147	47	1	3	149	68	213	2.10e-72	216
Msa0145950	AT1G45170.2	50.340	147	27	1	3	149	67	167	8.13e-44	142

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Find 66 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCTAACTTCTTACTCG+TGG	0.657874	1_4:-5685405	None:intergenic
AAATGGCAAAATATGCCTCA+TGG	0.624715	1_4:-5687709	None:intergenic
AACCTACATACACAGCAAAG+GGG	0.729150	1_4:+5685163	Msa0145950:CDS
AAGTATAGCTATGTCCATAA+GGG	0.470434	1_4:+5685278	Msa0145950:CDS
AATAAGGTTTCAGCGAATTA+TGG	0.297969	1_4:+5685230	Msa0145950:CDS
AATTATAGGATTCTGCAATA+TGG	0.241988	1_4:-5687840	None:intergenic
ACAGAATAACTTCATGAGAA+GGG	0.575988	1_4:-5688093	None:intergenic
AGACCACGAGTAAGAAGTTA+GGG	0.497058	1_4:+5685402	Msa0145950:CDS
AGCTTAGTGCCGAGACCACA+TGG	0.549160	1_4:+5687626	Msa0145950:CDS
AGGGGATAACAGAACAATTT+TGG	0.234866	1_4:+5685181	Msa0145950:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAAGGTTTCAGCGAATTA+TGG	+	chr1_4:5685230-5685249	Msa0145950:CDS	30.0%
AAGTATAGCTATGTCCATAA+GGG	+	chr1_4:5685278-5685297	Msa0145950:CDS	30.0%
TTCTTAGCAACATCATAACT+AGG	-	chr1_4:5685320-5685339	None:intergenic	30.0%
TTGCAATTGTGGTTGAAATA+TGG	+	chr1_4:5685616-5685635	Msa0145950:intron	30.0%
GAACATTGGATTGATATCTA+TGG	+	chr1_4:5685854-5685873	Msa0145950:intron	30.0%
TAATATGCTTAGAAGGTTGA+TGG	+	chr1_4:5686100-5686119	Msa0145950:intron	30.0%
GAATCAATTTCCAACTTCTT+TGG	+	chr1_4:5686420-5686439	Msa0145950:intron	30.0%
TGAAATAGCCAATACTTTAG+TGG	+	chr1_4:5686566-5686585	Msa0145950:intron	30.0%
GTTGAAGAAGATAGATGATT+GGG	+	chr1_4:5686894-5686913	Msa0145950:intron	30.0%
CAAGATAAAACCCAACTTAA+TGG	-	chr1_4:5686943-5686962	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	5685098	5688247	5685098	ID=Msa0145950;Name=Msa0145950
chr1_4	mRNA	5685098	5688247	5685098	ID=Msa0145950-mRNA-1;Parent=Msa0145950;Name=Msa0145950-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|1\|0.5\|1\|1\|1\|2\|584\|149
chr1_4	exon	5685098	5685466	5685098	ID=Msa0145950-mRNA-1:exon:2403;Parent=Msa0145950-mRNA-1
chr1_4	exon	5687583	5688247	5687583	ID=Msa0145950-mRNA-1:exon:2404;Parent=Msa0145950-mRNA-1
chr1_4	CDS	5685098	5685466	5685098	ID=Msa0145950-mRNA-1:cds;Parent=Msa0145950-mRNA-1
chr1_4	CDS	5687583	5687663	5687583	ID=Msa0145950-mRNA-1:cds;Parent=Msa0145950-mRNA-1
chr1_4	three_prime_UTR	5687664	5688247	5687664	ID=Msa0145950-mRNA-1:three_prime_utr;Parent=Msa0145950-mRNA-1

Gene Sequence

>Msa0145950

TTGGTGCAGGATTTTAGGTTTCAATTTATGAACACAGTTAGGGTTGCTGATAAACCGTTGAATTTAACCTACATACACAGCAAAGGGGATAACAGAACAATTTTGGACGGAACATTTGTGTGGGACCCATCGAATAAGGTTTCAGCGAATTATGGTGTTGAATCTGGGAATTGTAGATTGAAGTATAGCTATGTCCATAAGGGTTTGACTACAATTGAACCTAGTTATGATGTTGCTAAGAATGCGTGGGATTTTGCTGTTTCGAGGAAAGTTTATGGTGATGACTCATTGAAGGCGACGTATCAGACCACGAGTAAGAAGTTAGGGTTTGAGTGGTCGAGGAATTCGAAACAAAGGGGTTGTTTTAAGGTTGTGGCGTCCGTTAACTTGGCCGAGGAGAAGAAAATTCCCAAGCTTAGTGCCGAGACCACATGGAATTTTGAAATGTAG

Protein sequence

>Msa0145950

LVQDFRFQFMNTVRVADKPLNLTYIHSKGDNRTILDGTFVWDPSNKVSANYGVESGNCRLKYSYVHKGLTTIEPSYDVAKNAWDFAVSRKVYGDDSLKATYQTTSKKLGFEWSRNSKQRGCFKVVASVNLAEEKKIPKLSAETTWNFEM*