AlfalfaGEDB | Msa0704210

M. sativa cultivar zhongmu-4 / Msa0704210

KEGG: K10525
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009694 GO:0009695 GO:0009975 GO:0009987 GO:0010817 GO:0016020 GO:0016053 GO:0016853 GO:0016860 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046423 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0072330 GO:1901576
PFAM: PF06351.14

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0704210	XP_003614458.1	96.032	252	10	0	1	252	1	252	5.66e-176	494

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0704210	sp\|Q75KD7\|AOC_ORYSJ	70.048	207	59	2	47	252	36	240	1.04e-106	311

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0704210	Q711Q9	96.032	252	10	0	1	252	1	252	2.71e-176	494

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002680	Msa0704210	0.812390	4.343865e-51	-8.615850e-47
Msa0002710	Msa0704210	0.822736	2.019342e-53	-8.615850e-47
Msa0022750	Msa0704210	-0.814335	1.623639e-51	-8.615850e-47
Msa0041690	Msa0704210	0.803862	2.846912e-49	-8.615850e-47
Msa0057590	Msa0704210	0.815157	1.067501e-51	-8.615850e-47
Msa0704210	Msa0717020	0.807269	5.490016e-50	-8.615850e-47
Msa0704210	Msa0751260	0.818153	2.273885e-52	-8.615850e-47
Msa0704210	Msa0757800	0.804210	2.409659e-49	-8.615850e-47
Msa0704210	Msa0795070	0.836062	1.166226e-56	-8.615850e-47
Msa0704210	Msa0814710	0.915017	9.691517e-85	-8.615850e-47
Msa0704210	Msa0848750	0.996209	1.077306e-224	-8.615850e-47
Msa0704210	Msa0975940	0.803068	4.158783e-49	-8.615850e-47
Msa0704210	Msa1008750	0.800551	1.366532e-48	-8.615850e-47
Msa0704210	Msa1118760	0.800666	1.294940e-48	-8.615850e-47
Msa0704210	Msa1127770	0.809648	1.705859e-50	-8.615850e-47
Msa0704210	Msa1257070	0.805710	1.170463e-49	-8.615850e-47
Msa0704210	Msa1338830	0.800043	1.734561e-48	-8.615850e-47
Msa0704210	Msa1357080	0.803568	3.276860e-49	-8.615850e-47
Msa0704210	Msa1446780	0.803165	3.969862e-49	-8.615850e-47
Msa0143850	Msa0704210	0.802931	4.438277e-49	-8.615850e-47
Msa0173390	Msa0704210	0.805331	1.405538e-49	-8.615850e-47
Msa0187030	Msa0704210	0.846476	2.120410e-59	-8.615850e-47
Msa0225220	Msa0704210	0.802831	4.654771e-49	-8.615850e-47
Msa0397820	Msa0704210	0.807581	4.714634e-50	-8.615850e-47
Msa0473330	Msa0704210	0.803109	4.077239e-49	-8.615850e-47
Msa0342010	Msa0704210	0.810812	9.570996e-51	-8.615850e-47
Msa0506820	Msa0704210	0.814884	1.227422e-51	-8.615850e-47
Msa0506830	Msa0704210	0.801315	9.542474e-49	-8.615850e-47
Msa0559500	Msa0704210	0.803362	3.614484e-49	-8.615850e-47
Msa0579660	Msa0704210	0.816806	4.574599e-52	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0704210	MtrunA17_Chr5g0422541	96.032	252	10	0	1	252	1	252	5.21e-180	494
Msa0704210	MtrunA17_Chr7g0220911	66.087	230	63	3	36	252	23	250	4.99e-105	304
Msa0704210	MtrunA17_Chr4g0034431	73.797	187	49	0	66	252	71	257	3.01e-102	297
Msa0704210	MtrunA17_Chr6g0456971	72.989	174	46	1	80	252	96	269	4.74e-92	272
Msa0704210	MtrunA17_Chr6g0456981	60.426	235	78	5	1	229	1	226	3.72e-90	266
Msa0704210	MtrunA17_Chr8g0364271	53.247	77	24	1	56	120	36	112	4.41e-17	75.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0704210	AT3G25780.1	56.154	260	104	6	1	252	1	258	1.15e-90	268
Msa0704210	AT1G13280.1	63.902	205	71	3	51	252	50	254	2.55e-90	267
Msa0704210	AT3G25770.1	65.591	186	63	1	68	252	68	253	2.78e-87	259
Msa0704210	AT3G25760.1	66.667	180	59	1	74	252	75	254	2.75e-85	254

Find 56 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGAATCTTTGAAGGTGTTTA+TGG	0.136144	4_4:-76359423	Msa0704210:CDS
CCAGAATGAACCTGAGAAAA+AGG	0.235777	4_4:-76359559	Msa0704210:CDS
AAAGTGTAGAACAGCTTAAA+TGG	0.253758	4_4:+76359372	None:intergenic
AAGATTCTTGATGCTGCTTT+TGG	0.258177	4_4:+76359878	None:intergenic
TGTGTTAGGTTAAGCATAAT+TGG	0.266869	4_4:-76359100	Msa0704210:three_prime_UTR
GACTTACCTGTCTTCTTTCC+TGG	0.271265	4_4:-76359078	Msa0704210:three_prime_UTR
GTAAAAGAAAGGGTTGTTAA+AGG	0.298599	4_4:+76360134	None:intergenic
TTAGAAATTATTTATGTGTT+AGG	0.302851	4_4:-76359114	Msa0704210:three_prime_UTR
TGTATTCTTAGAACTTCTTT+TGG	0.308042	4_4:+76359927	None:intergenic
CTTGCTATAACAGGTGGTTC+TGG	0.324436	4_4:-76359444	Msa0704210:CDS
AGCTTCTACTTTGGAGACTA+TGG	0.327242	4_4:-76359513	Msa0704210:CDS
GCAATTTACAGCTTCTACTT+TGG	0.342420	4_4:-76359522	Msa0704210:CDS
AGTAAATCAGCTGGTAAATC+AGG	0.364092	4_4:+76359333	None:intergenic
TTTGAAGAGGAGAGGTAGAA+AGG	0.367019	4_4:+76360040	None:intergenic
GACACATATCTTGCTATAAC+AGG	0.372471	4_4:-76359453	Msa0704210:CDS
GATTTACCAGCTGATTTACT+TGG	0.374651	4_4:-76359330	Msa0704210:CDS
TTCATCATCATCACTTTCAA+TGG	0.399743	4_4:-76360100	Msa0704210:exon
GATGATCAGTTGGTGAAGTT+TGG	0.404018	4_4:+76359234	None:intergenic
CAAACTCTACTCAGGAAACT+TGG	0.405570	4_4:-76359622	Msa0704210:CDS
GAGGAGAGGTAGAAAGGTTG+AGG	0.414060	4_4:+76360046	None:intergenic
AAAAGGTTAGGTATAACTTC+AGG	0.428075	4_4:-76359597	Msa0704210:CDS
ACATGTGGTGATGGATCAAC+AGG	0.432460	4_4:+76359303	None:intergenic
TTTGGTTGTAGATGCTTGCT+TGG	0.457390	4_4:+76359945	None:intergenic
GGTGGTTCTGGAATCTTTGA+AGG	0.458254	4_4:-76359432	Msa0704210:CDS
TGACTTAGTCTAAGGTATGC+AGG	0.462035	4_4:+76359687	None:intergenic
AGGAGAGGTAGAAAGGTTGA+GGG	0.462699	4_4:+76360047	None:intergenic
TCTAACTGTAGCAGAGTTGT+TGG	0.462970	4_4:-76358976	Msa0704210:three_prime_UTR
GTTGGTGAAGTTTGGTAAAG+AGG	0.474236	4_4:+76359242	None:intergenic
TGAGGAAACTGGTAAAAGAA+AGG	0.475591	4_4:+76360123	None:intergenic
TAAAAGAAAGGGTTGTTAAA+GGG	0.476324	4_4:+76360135	None:intergenic
GTGTGGAAAACATTATTGTA+TGG	0.480059	4_4:-76360273	None:intergenic
GAAATTTCTTCTACTTGTGA+AGG	0.484237	4_4:+76359981	None:intergenic
AAGTGTAGAACAGCTTAAAT+GGG	0.495883	4_4:+76359373	None:intergenic
GGCTCAGTAGCCTTAGCAGC+AGG	0.509719	4_4:+76359270	None:intergenic
GGCTTTCCAAGTAAATCAGC+TGG	0.519357	4_4:+76359324	None:intergenic
GTAGCCTTAGCAGCAGGAGA+TGG	0.521268	4_4:+76359276	None:intergenic
CAACACTGCAGCTGCTACAG+AGG	0.521799	4_4:+76358941	None:intergenic
GAGTAGAGTTTGTTGCTGAA+TGG	0.523603	4_4:+76359633	None:intergenic
GCTATTGAAGAAGAATGCAT+TGG	0.528323	4_4:+76359900	None:intergenic
TGAACCATCTCCTGCTGCTA+AGG	0.534209	4_4:-76359280	Msa0704210:CDS
ATGATGATGAATGAGGAAAC+TGG	0.534397	4_4:+76360112	None:intergenic
TATGGTCATATATCAGTTCA+AGG	0.534518	4_4:-76359495	Msa0704210:CDS
AGAGACTAGAAGAAACTACT+TGG	0.543120	4_4:+76360010	None:intergenic
TTATAGCAAGATATGTGTCT+TGG	0.546680	4_4:+76359457	None:intergenic
GAGGAAACTGGTAAAAGAAA+GGG	0.549735	4_4:+76360124	None:intergenic
CATCAAGAATCTTCAAAGCC+AGG	0.550274	4_4:-76359868	Msa0704210:intron
TTCAGCAACAAACTCTACTC+AGG	0.581768	4_4:-76359630	Msa0704210:CDS
GATGGTTCAACATGTGGTGA+TGG	0.598259	4_4:+76359294	None:intergenic
GAAAGTGATGATGATGAATG+AGG	0.602804	4_4:+76360105	None:intergenic
GTGTCTTGGTATGTGAGATA+AGG	0.617679	4_4:+76359471	None:intergenic
GCAGGAGATGGTTCAACATG+TGG	0.619328	4_4:+76359288	None:intergenic
ACATATCTTGCTATAACAGG+TGG	0.657333	4_4:-76359450	Msa0704210:CDS
GAGATCAATGAACGTGACAG+AGG	0.668577	4_4:-76359714	Msa0704210:CDS
CTCTTGATGAGACTACAAAG+AGG	0.687108	4_4:-76359015	Msa0704210:three_prime_UTR
AAAGAGGTTGACAATTGACA+TGG	0.692155	4_4:-76358999	Msa0704210:three_prime_UTR
AAGTTTGGTAAAGAGGCATG+AGG	0.695608	4_4:+76359249	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AACAACTACAATTTATTTTT+TGG	+	chr4_4:76359965-76359984	None:intergenic	15.0%
!!	TTAGAAATTATTTATGTGTT+AGG	-	chr4_4:76360030-76360049	Msa0704210:CDS	15.0%
!!!	AACAACTACAATTTATTTTT+TGG	+	chr4_4:76359965-76359984	None:intergenic	15.0%
!!	TTAGAAATTATTTATGTGTT+AGG	-	chr4_4:76360030-76360049	Msa0704210:CDS	15.0%
!	AATGTGTGAAAAATGTAAGT+GGG	+	chr4_4:76358907-76358926	None:intergenic	25.0%
!!!	GTTAAAGGGAGTTTTATAAA+TGG	+	chr4_4:76358998-76359017	None:intergenic	25.0%
!	TAAAAGAAAGGGTTGTTAAA+GGG	+	chr4_4:76359012-76359031	None:intergenic	25.0%
!!	TGTATTCTTAGAACTTCTTT+TGG	+	chr4_4:76359220-76359239	None:intergenic	25.0%
!!!	TTCTACACTTTTTACTTGAA+GGG	-	chr4_4:76359784-76359803	Msa0704210:intron	25.0%
!	AATGTGTGAAAAATGTAAGT+GGG	+	chr4_4:76358907-76358926	None:intergenic	25.0%
!!!	GTTAAAGGGAGTTTTATAAA+TGG	+	chr4_4:76358998-76359017	None:intergenic	25.0%
!	TAAAAGAAAGGGTTGTTAAA+GGG	+	chr4_4:76359012-76359031	None:intergenic	25.0%
!!	TGTATTCTTAGAACTTCTTT+TGG	+	chr4_4:76359220-76359239	None:intergenic	25.0%
!!!	TTCTACACTTTTTACTTGAA+GGG	-	chr4_4:76359784-76359803	Msa0704210:intron	25.0%
	ATGTGTGAAAAATGTAAGTG+GGG	+	chr4_4:76358906-76358925	None:intergenic	30.0%
	CAATGTGTGAAAAATGTAAG+TGG	+	chr4_4:76358908-76358927	None:intergenic	30.0%
	GTAAAAGAAAGGGTTGTTAA+AGG	+	chr4_4:76359013-76359032	None:intergenic	30.0%
	TTCATCATCATCACTTTCAA+TGG	-	chr4_4:76359044-76359063	Msa0704210:three_prime_UTR	30.0%
!	AATCATTTTCAGAGAACTCA+TGG	+	chr4_4:76359073-76359092	None:intergenic	30.0%
	GAAATTTCTTCTACTTGTGA+AGG	+	chr4_4:76359166-76359185	None:intergenic	30.0%
!!!	CTGATTTTTGACTTAGTCTA+AGG	+	chr4_4:76359468-76359487	None:intergenic	30.0%
	AAAAGGTTAGGTATAACTTC+AGG	-	chr4_4:76359547-76359566	Msa0704210:CDS	30.0%
	TATGGTCATATATCAGTTCA+AGG	-	chr4_4:76359649-76359668	Msa0704210:CDS	30.0%
	TTATAGCAAGATATGTGTCT+TGG	+	chr4_4:76359690-76359709	None:intergenic	30.0%
	AAGTGTAGAACAGCTTAAAT+GGG	+	chr4_4:76359774-76359793	None:intergenic	30.0%
	AAAGTGTAGAACAGCTTAAA+TGG	+	chr4_4:76359775-76359794	None:intergenic	30.0%
!!	GTTCTACACTTTTTACTTGA+AGG	-	chr4_4:76359783-76359802	Msa0704210:intron	30.0%
	TGTGTTAGGTTAAGCATAAT+TGG	-	chr4_4:76360044-76360063	Msa0704210:CDS	30.0%
!!	GTGATGTAAATTGATTTTCC+AGG	+	chr4_4:76360087-76360106	None:intergenic	30.0%
!	ACAATCACATGCTTTTACAT+AGG	-	chr4_4:76360251-76360270	Msa0704210:five_prime_UTR	30.0%
!	AGGAATTCTTTTATAGTCAC+AGG	-	chr4_4:76360271-76360290	Msa0704210:five_prime_UTR	30.0%
	ATGTGTGAAAAATGTAAGTG+GGG	+	chr4_4:76358906-76358925	None:intergenic	30.0%
	CAATGTGTGAAAAATGTAAG+TGG	+	chr4_4:76358908-76358927	None:intergenic	30.0%
	GTAAAAGAAAGGGTTGTTAA+AGG	+	chr4_4:76359013-76359032	None:intergenic	30.0%
	TTCATCATCATCACTTTCAA+TGG	-	chr4_4:76359044-76359063	Msa0704210:three_prime_UTR	30.0%
!	AATCATTTTCAGAGAACTCA+TGG	+	chr4_4:76359073-76359092	None:intergenic	30.0%
	GAAATTTCTTCTACTTGTGA+AGG	+	chr4_4:76359166-76359185	None:intergenic	30.0%
!!!	CTGATTTTTGACTTAGTCTA+AGG	+	chr4_4:76359468-76359487	None:intergenic	30.0%
	AAAAGGTTAGGTATAACTTC+AGG	-	chr4_4:76359547-76359566	Msa0704210:CDS	30.0%
	TATGGTCATATATCAGTTCA+AGG	-	chr4_4:76359649-76359668	Msa0704210:CDS	30.0%
	TTATAGCAAGATATGTGTCT+TGG	+	chr4_4:76359690-76359709	None:intergenic	30.0%
	AAGTGTAGAACAGCTTAAAT+GGG	+	chr4_4:76359774-76359793	None:intergenic	30.0%
	AAAGTGTAGAACAGCTTAAA+TGG	+	chr4_4:76359775-76359794	None:intergenic	30.0%
!!	GTTCTACACTTTTTACTTGA+AGG	-	chr4_4:76359783-76359802	Msa0704210:intron	30.0%
	TGTGTTAGGTTAAGCATAAT+TGG	-	chr4_4:76360044-76360063	Msa0704210:CDS	30.0%
!!	GTGATGTAAATTGATTTTCC+AGG	+	chr4_4:76360087-76360106	None:intergenic	30.0%
!	ACAATCACATGCTTTTACAT+AGG	-	chr4_4:76360251-76360270	Msa0704210:five_prime_UTR	30.0%
!!!	ATTTGTGTGTTTTGACACGT+GGG	+	chr4_4:76358958-76358977	None:intergenic	35.0%
!!!	TATTTGTGTGTTTTGACACG+TGG	+	chr4_4:76358959-76358978	None:intergenic	35.0%
	GAGGAAACTGGTAAAAGAAA+GGG	+	chr4_4:76359023-76359042	None:intergenic	35.0%
	TGAGGAAACTGGTAAAAGAA+AGG	+	chr4_4:76359024-76359043	None:intergenic	35.0%
!	ATGATGATGAATGAGGAAAC+TGG	+	chr4_4:76359035-76359054	None:intergenic	35.0%
!	GAAAGTGATGATGATGAATG+AGG	+	chr4_4:76359042-76359061	None:intergenic	35.0%
!!!	ACTTGGTTTTGAGTTTGAAG+AGG	+	chr4_4:76359120-76359139	None:intergenic	35.0%
	AGAGACTAGAAGAAACTACT+TGG	+	chr4_4:76359137-76359156	None:intergenic	35.0%
	GCTATTGAAGAAGAATGCAT+TGG	+	chr4_4:76359247-76359266	None:intergenic	35.0%
!!!	AAGATTCTTGATGCTGCTTT+TGG	+	chr4_4:76359269-76359288	None:intergenic	35.0%
	CAGAAAATGCTACTAGCAAA+GGG	+	chr4_4:76359328-76359347	None:intergenic	35.0%
	TCAGAAAATGCTACTAGCAA+AGG	+	chr4_4:76359329-76359348	None:intergenic	35.0%
	CAAAAATCAGTGAACTCTCT+TGG	-	chr4_4:76359478-76359497	Msa0704210:CDS	35.0%
	ACTCAGGAAACTTGGAAAAA+AGG	-	chr4_4:76359530-76359549	Msa0704210:CDS	35.0%
	GGAAACTTGGAAAAAAGGTT+AGG	-	chr4_4:76359535-76359554	Msa0704210:CDS	35.0%
	CAGAATGAACCTGAGAAAAA+GGG	-	chr4_4:76359586-76359605	Msa0704210:CDS	35.0%
!	TATCTATCACCCTTTTTCTC+AGG	+	chr4_4:76359598-76359617	None:intergenic	35.0%
	GCAATTTACAGCTTCTACTT+TGG	-	chr4_4:76359622-76359641	Msa0704210:CDS	35.0%
!	GACACATATCTTGCTATAAC+AGG	-	chr4_4:76359691-76359710	Msa0704210:CDS	35.0%
!	ACATATCTTGCTATAACAGG+TGG	-	chr4_4:76359694-76359713	Msa0704210:CDS	35.0%
!!	GGAATCTTTGAAGGTGTTTA+TGG	-	chr4_4:76359721-76359740	Msa0704210:CDS	35.0%
	AGTAAATCAGCTGGTAAATC+AGG	+	chr4_4:76359814-76359833	None:intergenic	35.0%
!	GATTTACCAGCTGATTTACT+TGG	-	chr4_4:76359814-76359833	Msa0704210:intron	35.0%
!	TGATGATGATGATGATCAGT+TGG	+	chr4_4:76359923-76359942	None:intergenic	35.0%
	AAAGAGGTTGACAATTGACA+TGG	-	chr4_4:76360145-76360164	Msa0704210:five_prime_UTR	35.0%
!!!	ATTTGTGTGTTTTGACACGT+GGG	+	chr4_4:76358958-76358977	None:intergenic	35.0%
!!!	TATTTGTGTGTTTTGACACG+TGG	+	chr4_4:76358959-76358978	None:intergenic	35.0%
	GAGGAAACTGGTAAAAGAAA+GGG	+	chr4_4:76359023-76359042	None:intergenic	35.0%
	TGAGGAAACTGGTAAAAGAA+AGG	+	chr4_4:76359024-76359043	None:intergenic	35.0%
!	ATGATGATGAATGAGGAAAC+TGG	+	chr4_4:76359035-76359054	None:intergenic	35.0%
!	GAAAGTGATGATGATGAATG+AGG	+	chr4_4:76359042-76359061	None:intergenic	35.0%
!!!	ACTTGGTTTTGAGTTTGAAG+AGG	+	chr4_4:76359120-76359139	None:intergenic	35.0%
	AGAGACTAGAAGAAACTACT+TGG	+	chr4_4:76359137-76359156	None:intergenic	35.0%
	GCTATTGAAGAAGAATGCAT+TGG	+	chr4_4:76359247-76359266	None:intergenic	35.0%
!!!	AAGATTCTTGATGCTGCTTT+TGG	+	chr4_4:76359269-76359288	None:intergenic	35.0%
	CAGAAAATGCTACTAGCAAA+GGG	+	chr4_4:76359328-76359347	None:intergenic	35.0%
	TCAGAAAATGCTACTAGCAA+AGG	+	chr4_4:76359329-76359348	None:intergenic	35.0%
	CAAAAATCAGTGAACTCTCT+TGG	-	chr4_4:76359478-76359497	Msa0704210:CDS	35.0%
	ACTCAGGAAACTTGGAAAAA+AGG	-	chr4_4:76359530-76359549	Msa0704210:CDS	35.0%
	GGAAACTTGGAAAAAAGGTT+AGG	-	chr4_4:76359535-76359554	Msa0704210:CDS	35.0%
	CAGAATGAACCTGAGAAAAA+GGG	-	chr4_4:76359586-76359605	Msa0704210:CDS	35.0%
!	TATCTATCACCCTTTTTCTC+AGG	+	chr4_4:76359598-76359617	None:intergenic	35.0%
	GCAATTTACAGCTTCTACTT+TGG	-	chr4_4:76359622-76359641	Msa0704210:CDS	35.0%
!	GACACATATCTTGCTATAAC+AGG	-	chr4_4:76359691-76359710	Msa0704210:CDS	35.0%
!	ACATATCTTGCTATAACAGG+TGG	-	chr4_4:76359694-76359713	Msa0704210:CDS	35.0%
!!	GGAATCTTTGAAGGTGTTTA+TGG	-	chr4_4:76359721-76359740	Msa0704210:CDS	35.0%
	AGTAAATCAGCTGGTAAATC+AGG	+	chr4_4:76359814-76359833	None:intergenic	35.0%
!	GATTTACCAGCTGATTTACT+TGG	-	chr4_4:76359814-76359833	Msa0704210:intron	35.0%
!	TGATGATGATGATGATCAGT+TGG	+	chr4_4:76359923-76359942	None:intergenic	35.0%
	AAAGAGGTTGACAATTGACA+TGG	-	chr4_4:76360145-76360164	Msa0704210:five_prime_UTR	35.0%
	TTTGAAGAGGAGAGGTAGAA+AGG	+	chr4_4:76359107-76359126	None:intergenic	40.0%
!!!	GTTTTGAGTTTGAAGAGGAG+AGG	+	chr4_4:76359115-76359134	None:intergenic	40.0%
	TTTGGTTGTAGATGCTTGCT+TGG	+	chr4_4:76359202-76359221	None:intergenic	40.0%
	CATCAAGAATCTTCAAAGCC+AGG	-	chr4_4:76359276-76359295	Msa0704210:CDS	40.0%
!	TGACTTAGTCTAAGGTATGC+AGG	+	chr4_4:76359460-76359479	None:intergenic	40.0%
!!	GAGTAGAGTTTGTTGCTGAA+TGG	+	chr4_4:76359514-76359533	None:intergenic	40.0%
	TTCAGCAACAAACTCTACTC+AGG	-	chr4_4:76359514-76359533	Msa0704210:CDS	40.0%
	CAAACTCTACTCAGGAAACT+TGG	-	chr4_4:76359522-76359541	Msa0704210:CDS	40.0%
!	CCTTTTTCTCAGGTTCATTC+TGG	+	chr4_4:76359588-76359607	None:intergenic	40.0%
	CCAGAATGAACCTGAGAAAA+AGG	-	chr4_4:76359585-76359604	Msa0704210:CDS	40.0%
!	AGCTTCTACTTTGGAGACTA+TGG	-	chr4_4:76359631-76359650	Msa0704210:CDS	40.0%
	GTGTCTTGGTATGTGAGATA+AGG	+	chr4_4:76359676-76359695	None:intergenic	40.0%
!	AAGTTTGGTAAAGAGGCATG+AGG	+	chr4_4:76359898-76359917	None:intergenic	40.0%
!	GTTGGTGAAGTTTGGTAAAG+AGG	+	chr4_4:76359905-76359924	None:intergenic	40.0%
!!	GATGATCAGTTGGTGAAGTT+TGG	+	chr4_4:76359913-76359932	None:intergenic	40.0%
!	GATTTTCCAGGAAAGAAGAC+AGG	+	chr4_4:76360075-76360094	None:intergenic	40.0%
	CTCTTGATGAGACTACAAAG+AGG	-	chr4_4:76360129-76360148	Msa0704210:five_prime_UTR	40.0%
	TCTAACTGTAGCAGAGTTGT+TGG	-	chr4_4:76360168-76360187	Msa0704210:five_prime_UTR	40.0%
	TTTGAAGAGGAGAGGTAGAA+AGG	+	chr4_4:76359107-76359126	None:intergenic	40.0%
!!!	GTTTTGAGTTTGAAGAGGAG+AGG	+	chr4_4:76359115-76359134	None:intergenic	40.0%
	TTTGGTTGTAGATGCTTGCT+TGG	+	chr4_4:76359202-76359221	None:intergenic	40.0%
	CATCAAGAATCTTCAAAGCC+AGG	-	chr4_4:76359276-76359295	Msa0704210:CDS	40.0%
!	TGACTTAGTCTAAGGTATGC+AGG	+	chr4_4:76359460-76359479	None:intergenic	40.0%
!!	GAGTAGAGTTTGTTGCTGAA+TGG	+	chr4_4:76359514-76359533	None:intergenic	40.0%
	TTCAGCAACAAACTCTACTC+AGG	-	chr4_4:76359514-76359533	Msa0704210:CDS	40.0%
	CAAACTCTACTCAGGAAACT+TGG	-	chr4_4:76359522-76359541	Msa0704210:CDS	40.0%
!	CCTTTTTCTCAGGTTCATTC+TGG	+	chr4_4:76359588-76359607	None:intergenic	40.0%
	CCAGAATGAACCTGAGAAAA+AGG	-	chr4_4:76359585-76359604	Msa0704210:CDS	40.0%
!	AGCTTCTACTTTGGAGACTA+TGG	-	chr4_4:76359631-76359650	Msa0704210:CDS	40.0%
	GTGTCTTGGTATGTGAGATA+AGG	+	chr4_4:76359676-76359695	None:intergenic	40.0%
!	AAGTTTGGTAAAGAGGCATG+AGG	+	chr4_4:76359898-76359917	None:intergenic	40.0%
!	GTTGGTGAAGTTTGGTAAAG+AGG	+	chr4_4:76359905-76359924	None:intergenic	40.0%
!!	GATGATCAGTTGGTGAAGTT+TGG	+	chr4_4:76359913-76359932	None:intergenic	40.0%
!	GATTTTCCAGGAAAGAAGAC+AGG	+	chr4_4:76360075-76360094	None:intergenic	40.0%
	CTCTTGATGAGACTACAAAG+AGG	-	chr4_4:76360129-76360148	Msa0704210:five_prime_UTR	40.0%
	TCTAACTGTAGCAGAGTTGT+TGG	-	chr4_4:76360168-76360187	Msa0704210:five_prime_UTR	40.0%
	AGGAGAGGTAGAAAGGTTGA+GGG	+	chr4_4:76359100-76359119	None:intergenic	45.0%
!	CTGAGAAGCATGTACATACC+TGG	+	chr4_4:76359297-76359316	None:intergenic	45.0%
	GAGATCAATGAACGTGACAG+AGG	-	chr4_4:76359430-76359449	Msa0704210:CDS	45.0%
!	CTTGCTATAACAGGTGGTTC+TGG	-	chr4_4:76359700-76359719	Msa0704210:CDS	45.0%
!!	GGTGGTTCTGGAATCTTTGA+AGG	-	chr4_4:76359712-76359731	Msa0704210:CDS	45.0%
	GGCTTTCCAAGTAAATCAGC+TGG	+	chr4_4:76359823-76359842	None:intergenic	45.0%
!!	ACATGTGGTGATGGATCAAC+AGG	+	chr4_4:76359844-76359863	None:intergenic	45.0%
	GATGGTTCAACATGTGGTGA+TGG	+	chr4_4:76359853-76359872	None:intergenic	45.0%
	GACTTACCTGTCTTCTTTCC+TGG	-	chr4_4:76360066-76360085	Msa0704210:CDS	45.0%
	AGGAGAGGTAGAAAGGTTGA+GGG	+	chr4_4:76359100-76359119	None:intergenic	45.0%
!	CTGAGAAGCATGTACATACC+TGG	+	chr4_4:76359297-76359316	None:intergenic	45.0%
	GAGATCAATGAACGTGACAG+AGG	-	chr4_4:76359430-76359449	Msa0704210:CDS	45.0%
!	CTTGCTATAACAGGTGGTTC+TGG	-	chr4_4:76359700-76359719	Msa0704210:CDS	45.0%
!!	GGTGGTTCTGGAATCTTTGA+AGG	-	chr4_4:76359712-76359731	Msa0704210:CDS	45.0%
	GGCTTTCCAAGTAAATCAGC+TGG	+	chr4_4:76359823-76359842	None:intergenic	45.0%
!!	ACATGTGGTGATGGATCAAC+AGG	+	chr4_4:76359844-76359863	None:intergenic	45.0%
	GATGGTTCAACATGTGGTGA+TGG	+	chr4_4:76359853-76359872	None:intergenic	45.0%
	GACTTACCTGTCTTCTTTCC+TGG	-	chr4_4:76360066-76360085	Msa0704210:CDS	45.0%
	GAGGAGAGGTAGAAAGGTTG+AGG	+	chr4_4:76359101-76359120	None:intergenic	50.0%
	GCAGGAGATGGTTCAACATG+TGG	+	chr4_4:76359859-76359878	None:intergenic	50.0%
	TGAACCATCTCCTGCTGCTA+AGG	-	chr4_4:76359864-76359883	Msa0704210:intron	50.0%
	GAGGAGAGGTAGAAAGGTTG+AGG	+	chr4_4:76359101-76359120	None:intergenic	50.0%
	GCAGGAGATGGTTCAACATG+TGG	+	chr4_4:76359859-76359878	None:intergenic	50.0%
	TGAACCATCTCCTGCTGCTA+AGG	-	chr4_4:76359864-76359883	Msa0704210:intron	50.0%
!	GTAGCCTTAGCAGCAGGAGA+TGG	+	chr4_4:76359871-76359890	None:intergenic	55.0%
	CAACACTGCAGCTGCTACAG+AGG	+	chr4_4:76360206-76360225	None:intergenic	55.0%
!	GTAGCCTTAGCAGCAGGAGA+TGG	+	chr4_4:76359871-76359890	None:intergenic	55.0%
	CAACACTGCAGCTGCTACAG+AGG	+	chr4_4:76360206-76360225	None:intergenic	55.0%
!	GGCTCAGTAGCCTTAGCAGC+AGG	+	chr4_4:76359877-76359896	None:intergenic	60.0%
!	GGCTCAGTAGCCTTAGCAGC+AGG	+	chr4_4:76359877-76359896	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	76358875	76360291	76358875	ID=Msa0704210;Name=Msa0704210
chr4_4	mRNA	76358875	76360291	76358875	ID=Msa0704210-mRNA-1;Parent=Msa0704210;Name=Msa0704210-mRNA-1;_AED=0.00;_eAED=0.00;_QI=188\|1\|1\|1\|1\|1\|2\|364\|252
chr4_4	exon	76358875	76359762	76358875	ID=Msa0704210-mRNA-1:exon:24080;Parent=Msa0704210-mRNA-1
chr4_4	exon	76359869	76360291	76359869	ID=Msa0704210-mRNA-1:exon:24079;Parent=Msa0704210-mRNA-1
chr4_4	five_prime_UTR	76360104	76360291	76360104	ID=Msa0704210-mRNA-1:five_prime_utr;Parent=Msa0704210-mRNA-1
chr4_4	CDS	76359869	76360103	76359869	ID=Msa0704210-mRNA-1:cds;Parent=Msa0704210-mRNA-1
chr4_4	CDS	76359239	76359762	76359239	ID=Msa0704210-mRNA-1:cds;Parent=Msa0704210-mRNA-1
chr4_4	three_prime_UTR	76358875	76359238	76358875	ID=Msa0704210-mRNA-1:three_prime_utr;Parent=Msa0704210-mRNA-1

Gene Sequence

>Msa0704210

ATGGCATCCATGAGTTCTCTGAAAATGATTTCTTCCCTCAACCTTTCTACCTCTCCTCTTCAAACTCAAAACCAAGTAGTTTCTTCTAGTCTCTCTCTATCCTTCACAAGTAGAAGAAATTTCAACACTTCAATCACCAAGCAAGCATCTACAACCAAAAGAAGTTCTAAGAATACAAGAACCAATGCATTCTTCTTCAATAGCCAAAAGCAGCATCAAGAATCTTCAAAGCCAGCTAAAGTTCAAGAACTTTTTGTGTATGAGATCAATGAACGTGACAGAGGAAGTCCTGCATACCTTAGACTAAGTCAAAAATCAGTGAACTCTCTTGGAGATTTAGTACCATTCAGCAACAAACTCTACTCAGGAAACTTGGAAAAAAGGTTAGGTATAACTTCAGGTTTATGTATACTGATCCAGAATGAACCTGAGAAAAAGGGTGATAGATATGAAGCAATTTACAGCTTCTACTTTGGAGACTATGGTCATATATCAGTTCAAGGACCTTATCTCACATACCAAGACACATATCTTGCTATAACAGGTGGTTCTGGAATCTTTGAAGGTGTTTATGGACAAGTTAAACTTCAACAACTTGTGTTCCCATTTAAGCTGTTCTACACTTTTTACTTGAAGGGTGTTCCTGATTTACCAGCTGATTTACTTGGAAAGCCTGTTGATCCATCACCACATGTTGAACCATCTCCTGCTGCTAAGGCTACTGAGCCTCATGCCTCTTTACCAAACTTCACCAACTGA

Protein sequence

>Msa0704210

MASMSSLKMISSLNLSTSPLQTQNQVVSSSLSLSFTSRRNFNTSITKQASTTKRSSKNTRTNAFFFNSQKQHQESSKPAKVQELFVYEINERDRGSPAYLRLSQKSVNSLGDLVPFSNKLYSGNLEKRLGITSGLCILIQNEPEKKGDRYEAIYSFYFGDYGHISVQGPYLTYQDTYLAITGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGVPDLPADLLGKPVDPSPHVEPSPAAKATEPHASLPNFTN*