AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0975940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0975940 MtrunA17_Chr6g0454711 92.964 1208 76 5 1 1204 1 1203 0.0 2054
Msa0975940 MtrunA17_Chr7g0220961 38.213 1209 638 24 54 1204 20 1177 0.0 633
Msa0975940 MtrunA17_Chr7g0274701 62.030 266 62 7 799 1057 8 241 1.92e-85 278
Msa0975940 MtrunA17_Chr4g0054401 28.242 825 563 6 42 839 6 828 7.27e-73 264
Msa0975940 MtrunA17_Chr6g0454681 83.108 148 21 2 1060 1204 15 161 1.64e-57 195
Msa0975940 MtrunA17_Chr1g0184641 63.194 144 22 3 921 1057 1 120 1.40e-43 154
Msa0975940 MtrunA17_Chr1g0184651 46.111 180 51 6 338 488 100 262 1.14e-20 95.1
Msa0975940 MtrunA17_Chr1g0184651 63.636 88 24 4 799 886 257 336 2.57e-20 94.0
Msa0975940 MtrunA17_Chr5g0421221 92.857 42 3 0 108 149 1 42 3.51e-19 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0975940 AT1G67230.1 36.471 1190 649 20 45 1204 20 1132 0.0 593
Msa0975940 AT1G13220.3 39.612 1083 566 21 1 1060 1 1018 0.0 593
Msa0975940 AT1G68790.1 38.800 1067 525 12 1 1059 1 947 0.0 582
Msa0975940 AT1G13220.2 39.383 1069 562 20 13 1060 2 1005 0.0 581
Msa0975940 AT1G13220.1 47.668 386 181 7 1 370 1 381 2.26e-86 286
Msa0975940 AT5G65780.2 28.159 831 562 7 43 839 14 843 4.15e-73 265
Msa0975940 AT5G65770.1 28.190 823 564 6 43 839 14 835 2.95e-72 262
Msa0975940 AT5G65770.3 28.190 823 564 6 43 839 14 835 2.95e-72 262
Msa0975940 AT5G65770.2 27.529 850 562 8 43 839 14 862 7.34e-67 246

Find 274 sgRNAs with CRISPR-Local

Find 569 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACGTTCTTTCTTTACTTTC+TGG 0.120358 6_4:+9716285 None:intergenic
AGATATCAAACACTCGATTT+AGG 0.174384 6_4:+9721265 None:intergenic
TTTGCTCATCAAGAAGTTTC+TGG 0.198103 6_4:+9717383 None:intergenic
AGTAAGATATTCTGTATTAT+TGG 0.206317 6_4:+9714259 None:intergenic
TGGCTACTCTCCTATTTAAA+AGG 0.236080 6_4:+9713326 None:intergenic
AGTAGCCATAATCTAATCTT+TGG 0.256657 6_4:-9713311 Msa0975940:three_prime_UTR
TTTGATCTCCACAGACTTTA+CGG 0.257512 6_4:+9713734 None:intergenic
CCCTTTGCGAGGGCAGATTT+AGG 0.259378 6_4:+9721123 None:intergenic
TCTCAACAAGTGCGAGAAAA+TGG 0.273616 6_4:+9716240 None:intergenic
TGGAAGAGGTTTAGAGAAGT+TGG 0.277398 6_4:-9720997 Msa0975940:CDS
GATATCAAACACTCGATTTA+GGG 0.279994 6_4:+9721266 None:intergenic
GGAAAGAGAGAGAAAATTTC+AGG 0.282006 6_4:-9716495 Msa0975940:CDS
CGTTTGAGATTTATTAATAA+AGG 0.296467 6_4:-9713271 Msa0975940:three_prime_UTR
ACTATCGGTCCTTCTATATT+AGG 0.297956 6_4:+9715894 None:intergenic
CATGTAGCTGTGTTCATCTA+TGG 0.309600 6_4:+9715761 None:intergenic
CCCCTCTCTGGCAATGTTAT+CGG 0.310782 6_4:+9715803 None:intergenic
AAGGACAATGTTATCGCTTC+TGG 0.315795 6_4:-9716095 Msa0975940:CDS
GTCTTTGTCGACCAACCTTT+GGG 0.317806 6_4:+9715694 None:intergenic
TTAACCCAAAGATTAGATTA+TGG 0.339623 6_4:+9713306 None:intergenic
TCAGCTACCACTGCTACTTC+AGG 0.340563 6_4:+9713795 None:intergenic
CAAACCATTCTGGATCTAAA+TGG 0.344630 6_4:-9716070 Msa0975940:CDS
GCTTGCTGATCGAAAGAGTT+TGG 0.345097 6_4:-9717074 Msa0975940:CDS
GGTCTTTGTCGACCAACCTT+TGG 0.346536 6_4:+9715693 None:intergenic
GAACCCAACGGCGGCGGCGG+AGG 0.350950 6_4:+9721072 None:intergenic
TAGCAGCAAGGAGGAGGCCT+TGG 0.353756 6_4:-9717284 Msa0975940:CDS
GCTCCACCCACACAAGTTAC+AGG 0.356842 6_4:-9715378 Msa0975940:CDS
GCTTCTGGCTCAAACCATTC+TGG 0.360128 6_4:-9716080 Msa0975940:CDS
GGAGCTTGAAAAGCTTGAAT+TGG 0.363341 6_4:-9716678 Msa0975940:CDS
ACCTCCTCCGCCGCCGCCGT+TGG 0.363759 6_4:-9721076 Msa0975940:CDS
GGCTTAGGTTTGAGAAAGAA+TGG 0.365881 6_4:-9716844 Msa0975940:CDS
CTCAGTGAAGGCTGTGGTTA+AGG 0.366251 6_4:-9715634 Msa0975940:CDS
TTATCTGAAGGAAGTGCATT+TGG 0.372183 6_4:-9714304 Msa0975940:intron
CCTGTTTACCTCAGCAAGCC+TGG 0.372253 6_4:+9718502 None:intergenic
CCTGGGAGGAAAAGCAAATC+TGG 0.372959 6_4:-9715672 Msa0975940:CDS
AGGAGGAGGCCTTGGAGTAT+AGG 0.374167 6_4:-9717276 Msa0975940:CDS
AGAGAAAGAATTACATGAAC+TGG 0.379629 6_4:-9717879 Msa0975940:CDS
AGGACTGTGGGGAAGTTGTC+AGG 0.383083 6_4:-9716202 Msa0975940:CDS
CCCAACGGCGGCGGCGGAGG+AGG 0.384091 6_4:+9721075 None:intergenic
CCAGGCTTGCTGAGGTAAAC+AGG 0.384351 6_4:-9718502 Msa0975940:CDS
GAGAATTTAAATGCTGAACT+TGG 0.385406 6_4:-9717052 Msa0975940:CDS
GGAGGAGGCCTTGGAGTATA+GGG 0.387491 6_4:-9717275 Msa0975940:CDS
TTGCCTCAGCCGATCGAACT+TGG 0.388572 6_4:+9719855 None:intergenic
AGAGCATTCTCGTTTGCAAT+TGG 0.391507 6_4:-9716945 Msa0975940:CDS
AGAAGCTTCTGGTGGTAAAC+AGG 0.391572 6_4:-9713835 Msa0975940:CDS
TCATTCACACCGCGTCGAAT+TGG 0.391919 6_4:-9721153 Msa0975940:CDS
GAAAGTGCTACACTGGAGTA+TGG 0.395439 6_4:-9713537 Msa0975940:CDS
AGTCTATAATTGTGTTGAAT+TGG 0.398548 6_4:-9719675 Msa0975940:CDS
ATTGGTACTTCAAATATAGC+TGG 0.403690 6_4:-9715978 Msa0975940:CDS
CTTGAAAGATGCTGCTGAAA+AGG 0.408230 6_4:-9716438 Msa0975940:CDS
CCTCCTCCGCCGCCGCCGTT+GGG 0.409808 6_4:-9721075 Msa0975940:CDS
CTTCTAGTTATGCTGAAGAT+TGG 0.410249 6_4:-9721017 Msa0975940:CDS
GAAAAGAGAGAAGCAAGATA+TGG 0.411646 6_4:-9716717 Msa0975940:CDS
TGACATTAGTGCAGAACAAC+AGG 0.416949 6_4:-9716798 Msa0975940:CDS
ATAGAATCTGTGTTAGTACT+AGG 0.419932 6_4:+9715999 None:intergenic
GCAGCAGTTTGAGCTTGAAA+TGG 0.421853 6_4:-9717338 Msa0975940:CDS
GTAGCCATAATCTAATCTTT+GGG 0.423050 6_4:-9713310 Msa0975940:three_prime_UTR
GAAAGATGATGAAGCGATGT+TGG 0.423626 6_4:-9720947 Msa0975940:CDS
TCGTGAAAGTTTGCTTCAAA+AGG 0.425567 6_4:-9718438 Msa0975940:CDS
ATTATCCATTAGCATTAGAA+TGG 0.425621 6_4:+9713165 None:intergenic
TACGAAGTCTGAGAGAATAA+AGG 0.426804 6_4:-9717197 Msa0975940:CDS
AGAGAGAGATCTAGAAGTGT+TGG 0.427600 6_4:-9718131 Msa0975940:CDS
AGGGGATAAACTGAAAATCT+TGG 0.429491 6_4:+9716019 None:intergenic
AAGATTTGAAGGAGTGGGAG+AGG 0.432343 6_4:-9718252 Msa0975940:CDS
GTGTCATCTCCTAATATAGA+AGG 0.432781 6_4:-9715903 Msa0975940:CDS
TGAGAAAGAATGGGAAGAAC+TGG 0.433982 6_4:-9716834 Msa0975940:CDS
TCGCACTTGTTGAGAAGCTC+AGG 0.436977 6_4:-9716232 Msa0975940:CDS
AACAAAGTTGAAATCATTGA+AGG 0.439065 6_4:-9717155 Msa0975940:CDS
GAGAAAATTTCAGGAGGAGA+TGG 0.442944 6_4:-9716486 Msa0975940:CDS
GAGAGAGCTGGAGAAGGAAA+AGG 0.444660 6_4:-9717104 Msa0975940:CDS
TTCCAACCTTGGTTTCCCTA+TGG 0.449849 6_4:+9717239 None:intergenic
ACTTGAGGGATGAGAGGCTT+AGG 0.450821 6_4:-9716859 Msa0975940:CDS
AGAGGAAGACGAAGAGGAGG+AGG 0.451006 6_4:-9713457 Msa0975940:CDS
CAAACAAAGGGAAGATTTGA+AGG 0.454244 6_4:-9718263 Msa0975940:CDS
AGATATGAAGTTGCGAGAGC+TGG 0.455780 6_4:-9718465 Msa0975940:CDS
AAAGAACCCAACGGCGGCGG+CGG 0.457979 6_4:+9721069 None:intergenic
GCAAATTAAATGTACTGCTT+AGG 0.458093 6_4:-9713201 Msa0975940:three_prime_UTR
GCAGAAAGATTTAATTATGA+AGG 0.459481 6_4:-9716891 Msa0975940:CDS
GCTTAGGTTTGAGAAAGAAT+GGG 0.462231 6_4:-9716843 Msa0975940:CDS
CTCTGGCAATGTTATCGGAT+TGG 0.464030 6_4:+9715808 None:intergenic
TCAGAAAAGGAAAGAGGAGA+TGG 0.464571 6_4:-9716531 Msa0975940:CDS
GAAAATAAAAGAGAGAGAGC+TGG 0.465720 6_4:-9717116 Msa0975940:CDS
AGTACTAACACAGATTCTAT+TGG 0.467255 6_4:-9715996 Msa0975940:CDS
TCTGCACTAGAGTCGTGGTT+TGG 0.467680 6_4:+9713763 None:intergenic
GATTTCGAGACTGGAGAAAG+AGG 0.467834 6_4:-9720920 Msa0975940:intron
TTGGGTTCTTTGACTGATAC+CGG 0.468029 6_4:-9721057 Msa0975940:CDS
GAAGAGGAGGAGGAGGATCC+CGG 0.468527 6_4:-9713447 Msa0975940:CDS
ATATTCAGTATTCCCCTCTC+TGG 0.468877 6_4:+9715791 None:intergenic
TCAAAGATGATCGAGTTGTA+AGG 0.470013 6_4:-9713716 Msa0975940:CDS
GCTTCAAATTCTCAGTCTCT+TGG 0.471592 6_4:+9716987 None:intergenic
GCATGTACTCACACTTTCTC+TGG 0.472735 6_4:+9717841 None:intergenic
GTTGGAGAAGATTTCGAGAC+TGG 0.473700 6_4:-9720929 Msa0975940:CDS
AAATCTTGGACGTGCATTTG+CGG 0.475636 6_4:+9716033 None:intergenic
TAATTCTTTATTAAAAGAAA+AGG 0.478156 6_4:-9718089 Msa0975940:CDS
AACTGCATGATGCAGAAGCC+AGG 0.479517 6_4:-9718520 Msa0975940:CDS
CAGCTACCACTGCTACTTCA+GGG 0.480342 6_4:+9713796 None:intergenic
AGCTACATGGAAAGTTTGAC+AGG 0.482662 6_4:-9715747 Msa0975940:CDS
TGTCCGTTATGACTGTCCTC+TGG 0.488777 6_4:-9713223 Msa0975940:three_prime_UTR
CTTTCCGATAGACGCCTCAC+CGG 0.492676 6_4:+9713428 None:intergenic
ACTGACTGTTGAGAATCATC+TGG 0.493393 6_4:+9715717 None:intergenic
TGAAATTCAGAAAAGGAAAG+AGG 0.498030 6_4:-9716537 Msa0975940:CDS
GAGTTCTCAAGAGGAGATGT+AGG 0.498345 6_4:+9716119 None:intergenic
AAAAGAGAGAGAGCTGGAGA+AGG 0.499778 6_4:-9717110 Msa0975940:CDS
TTCTCCCCTGTAACTTGTGT+GGG 0.500234 6_4:+9715372 None:intergenic
TTTCCGATAGACGCCTCACC+GGG 0.500964 6_4:+9713429 None:intergenic
TTTGCAATTGGAACTAAAGC+AGG 0.501696 6_4:-9716933 Msa0975940:CDS
TATGGAAGATAATTTAAAGA+AGG 0.502698 6_4:-9716699 Msa0975940:CDS
GAGAATAAAGGAGCAAGATA+AGG 0.504185 6_4:-9717185 Msa0975940:CDS
GCGAAACTCCGTTCAATCAC+CGG 0.505156 6_4:-9721225 Msa0975940:five_prime_UTR
CAGGCCATTTAGATCCAGAA+TGG 0.505160 6_4:+9716066 None:intergenic
TTGAGAATGAAATTCAGAAA+AGG 0.505300 6_4:-9716544 Msa0975940:CDS
TTCAATGCGGTCCACAGAGT+TGG 0.507071 6_4:+9713560 None:intergenic
GAAGGAAGCTGAAAACTTGA+GGG 0.507185 6_4:-9716873 Msa0975940:CDS
ACCTAAATCTGCCCTCGCAA+AGG 0.507616 6_4:-9721124 Msa0975940:CDS
GTCAAAGAACCCAACGGCGG+CGG 0.508443 6_4:+9721066 None:intergenic
AGGGGATCAGATTAGAGAAT+GGG 0.508665 6_4:-9716394 Msa0975940:CDS
CCTAAATCTGCCCTCGCAAA+GGG 0.513002 6_4:-9721123 Msa0975940:CDS
TGGCAATGTTATCGGATTGG+AGG 0.513095 6_4:+9715811 None:intergenic
ATCAGTATTCTACAAACAAA+GGG 0.513188 6_4:-9718275 Msa0975940:CDS
GGAAGACGAAGAGGAGGAGG+AGG 0.513977 6_4:-9713454 Msa0975940:CDS
TAGAATCTGTGTTAGTACTA+GGG 0.514155 6_4:+9716000 None:intergenic
TCAGGAATTGCAAGGACTGT+GGG 0.515834 6_4:-9716214 Msa0975940:CDS
GAGGGGATCAGATTAGAGAA+TGG 0.517472 6_4:-9716395 Msa0975940:CDS
TGAAGAGGAAGACGAAGAGG+AGG 0.518337 6_4:-9713460 Msa0975940:CDS
AATCAGTATTCTACAAACAA+AGG 0.518377 6_4:-9718276 Msa0975940:CDS
AAGGGAAGATTTGAAGGAGT+GGG 0.519187 6_4:-9718257 Msa0975940:CDS
TCCGATAACATTGCCAGAGA+GGG 0.519318 6_4:-9715804 Msa0975940:CDS
TAGTGATTCAATTAAACAAG+AGG 0.520601 6_4:-9716642 Msa0975940:CDS
AGTAGCTTTCTCAGTGTGAC+TGG 0.522329 6_4:+9715533 None:intergenic
ACCCCACACTCTTTACTGTC+AGG 0.524747 6_4:+9716152 None:intergenic
GTGATTGAACGGAGTTTCGC+CGG 0.527757 6_4:+9721228 None:intergenic
TTAACATTTACATCAGACTC+AGG 0.527946 6_4:+9715948 None:intergenic
CTGGAGTATGGAGATGAAGA+TGG 0.528626 6_4:-9713525 Msa0975940:CDS
AAAGGGAAGATTTGAAGGAG+TGG 0.529560 6_4:-9718258 Msa0975940:CDS
AGTCAATGACGTTGAAAATG+AGG 0.532131 6_4:-9713496 Msa0975940:CDS
AGTGATGGTAGGCAAAATCT+TGG 0.532235 6_4:-9718202 Msa0975940:CDS
GGGAAATCGAAGTCAACCAT+AGG 0.532315 6_4:-9717255 Msa0975940:CDS
GGAGATGGAGAAAGACCTGC+AGG 0.533102 6_4:-9716516 Msa0975940:CDS
CAGAGAAAATCACGACCTAT+CGG 0.533991 6_4:-9721186 Msa0975940:CDS
GGAGTTTAGCAGCAAGGAGG+AGG 0.534064 6_4:-9717290 Msa0975940:CDS
CTGGTGGGCGCAAGAAGAAA+AGG 0.535720 6_4:-9715410 Msa0975940:CDS
ACTCTTGCTTCTCAATAAGA+AGG 0.535766 6_4:+9719884 None:intergenic
CTCCACCCACACAAGTTACA+GGG 0.536013 6_4:-9715377 Msa0975940:CDS
CGGCGGCGGAGGAGGTTCAT+CGG 0.537193 6_4:+9721083 None:intergenic
TTGTCATCAACATTGTCTCT+TGG 0.538284 6_4:+9713594 None:intergenic
GCAAGAACTAGCTGAAACTC+AGG 0.538381 6_4:-9719836 Msa0975940:CDS
AGAATTTAAATGCTGAACTT+GGG 0.538482 6_4:-9717051 Msa0975940:CDS
AAGGAGGCCAATGAGTTCCT+AGG 0.539154 6_4:-9715615 Msa0975940:CDS
AAGGTTGGTCGACAAAGACC+TGG 0.539593 6_4:-9715690 Msa0975940:CDS
CATAGATGAACACAGCTACA+TGG 0.541220 6_4:-9715760 Msa0975940:CDS
TTGTCCTTTGAGTTCTCAAG+AGG 0.541562 6_4:+9716110 None:intergenic
AAGCTACTGGTAACAGTACA+AGG 0.542179 6_4:-9715518 Msa0975940:CDS
GGGAGAAGCGTTACAACCTC+AGG 0.543273 6_4:-9715356 Msa0975940:CDS
TGAAGAACAGTGAAGAAGAA+AGG 0.543709 6_4:-9716742 Msa0975940:CDS
AGATGAAGAGGAAGACGAAG+AGG 0.545687 6_4:-9713463 Msa0975940:CDS
TGCTAGAACACGCTCAGTGA+AGG 0.548424 6_4:-9715646 Msa0975940:CDS
TCTCCTATTTAAAAGGAATG+AGG 0.550019 6_4:+9713333 None:intergenic
CTCAAGAGGAGATGTAGGCA+AGG 0.550578 6_4:+9716124 None:intergenic
AACCATAGGGAAACCAAGGT+TGG 0.551919 6_4:-9717241 Msa0975940:CDS
AGATGTAGATGCAGAAGAGA+AGG 0.555930 6_4:-9718041 Msa0975940:intron
TGAAGGAAGCTGAAAACTTG+AGG 0.556071 6_4:-9716874 Msa0975940:CDS
TTCTTATTGAGAAGCAAGAG+TGG 0.556750 6_4:-9719882 Msa0975940:CDS
CTGAAAACTTGAGGGATGAG+AGG 0.558017 6_4:-9716865 Msa0975940:CDS
TCCCCTGTAACTTGTGTGGG+TGG 0.561225 6_4:+9715375 None:intergenic
CTTCTCCCCTGTAACTTGTG+TGG 0.561940 6_4:+9715371 None:intergenic
GTTCCAAGTTCGATCGGCTG+AGG 0.564595 6_4:-9719858 Msa0975940:CDS
CAAAGATGATCGAGTTGTAA+GGG 0.564712 6_4:-9713715 Msa0975940:intron
GTTATGCTGAAGATTGGAAG+AGG 0.565774 6_4:-9721011 Msa0975940:CDS
TGCATTTGGCTTTACTGTGG+TGG 0.566564 6_4:-9714290 Msa0975940:CDS
TCTGGTGGTAAACAGGAGGC+AGG 0.569608 6_4:-9713828 Msa0975940:CDS
AGGATATGCTAAGTGATGGT+AGG 0.570303 6_4:-9718213 Msa0975940:CDS
AGATAAAGCAAATGAATTGG+TGG 0.570947 6_4:-9718579 Msa0975940:CDS
TTGCCAGAGGACAGTCATAA+CGG 0.570969 6_4:+9713220 None:intergenic
CGCTGAGGAGTTTAGCAGCA+AGG 0.571506 6_4:-9717296 Msa0975940:CDS
AAAGCAAATGAATTGGTGGA+TGG 0.572221 6_4:-9718575 Msa0975940:CDS
TACCTGACAGTAAAGAGTGT+GGG 0.574126 6_4:-9716154 Msa0975940:CDS
AATGGTTTCTTTCAGCCACA+AGG 0.575417 6_4:+9716258 None:intergenic
CATTGAAGAAAGTGCTACAC+TGG 0.575960 6_4:-9713544 Msa0975940:CDS
AGAACAACAGGAAGTTGAGA+AGG 0.576331 6_4:-9716786 Msa0975940:CDS
AGTCACACTGAGAAAGCTAC+TGG 0.580719 6_4:-9715531 Msa0975940:CDS
TAACATTTACATCAGACTCA+GGG 0.580947 6_4:+9715949 None:intergenic
TTGGTACTTCAAATATAGCT+GGG 0.581989 6_4:-9715977 Msa0975940:CDS
CGTTCTTGAAGAGTAACTAT+CGG 0.582739 6_4:+9715879 None:intergenic
TGACGTTGAAAATGAGGACG+AGG 0.582743 6_4:-9713490 Msa0975940:CDS
AGATGCTGCTGAAAAGGAAT+GGG 0.583771 6_4:-9716432 Msa0975940:CDS
CAAGAACGACAAATAGCAGA+TGG 0.584944 6_4:-9715864 Msa0975940:CDS
CTGCGGCGTGAACATTGCGC+CGG 0.585168 6_4:+9721206 None:intergenic
AAGATGCTGCTGAAAAGGAA+TGG 0.585528 6_4:-9716433 Msa0975940:CDS
TTCGATTTCCCTATACTCCA+AGG 0.586462 6_4:+9717267 None:intergenic
GGTGGATGGAATTGAAGAGA+AGG 0.587693 6_4:-9718561 Msa0975940:CDS
CTCAGGAATTGCAAGGACTG+TGG 0.588481 6_4:-9716215 Msa0975940:CDS
AGTTGGACTGCTTGATGAAG+CGG 0.588571 6_4:-9720980 Msa0975940:CDS
GGAAATCGAAGTCAACCATA+GGG 0.591240 6_4:-9717254 Msa0975940:CDS
CATTCAGACAGTACAACAGC+TGG 0.591601 6_4:-9715429 Msa0975940:CDS
CAACAGTCAGTCCCAAAGGT+TGG 0.593294 6_4:-9715705 Msa0975940:CDS
AGAATCTGTGTTAGTACTAG+GGG 0.593869 6_4:+9716001 None:intergenic
AGTGGAGTTCCAAGTTCGAT+CGG 0.595372 6_4:-9719864 Msa0975940:CDS
TGGGAAGAAGTCAAGTCTGA+GGG 0.596327 6_4:-9716413 Msa0975940:CDS
TCAGACAGTACAACAGCTGG+TGG 0.597261 6_4:-9715426 Msa0975940:CDS
TGATACCGGCGATGATGTTG+TGG 0.598348 6_4:-9721043 Msa0975940:CDS
AGCTTGAAATGGAACAAAAG+CGG 0.598423 6_4:-9717327 Msa0975940:CDS
ACAGGAAGTTGAGAAGGAGA+AGG 0.599786 6_4:-9716780 Msa0975940:CDS
ATAAATCTCAAACGAAAACA+TGG 0.599801 6_4:+9713280 None:intergenic
AGCCACCACAACATCATCGC+CGG 0.603055 6_4:+9721038 None:intergenic
TGCGAGGGCAGATTTAGGTG+TGG 0.604336 6_4:+9721128 None:intergenic
AGAGAGGATATGCTAAGTGA+TGG 0.606221 6_4:-9718217 Msa0975940:CDS
ACATTGCGCCGGTGATTGAA+CGG 0.608062 6_4:+9721217 None:intergenic
TCAAGAGGAGATGTAGGCAA+GGG 0.609994 6_4:+9716125 None:intergenic
AGTGAAGGCTGTGGTTAAGG+AGG 0.611402 6_4:-9715631 Msa0975940:CDS
AACACGCTCAGTGAAGGCTG+TGG 0.612656 6_4:-9715640 Msa0975940:CDS
TATGAAGTTGCGAGAGCTGG+AGG 0.612971 6_4:-9718462 Msa0975940:CDS
TGAGAAGCTCAGGAATTGCA+AGG 0.613927 6_4:-9716222 Msa0975940:CDS
GAAAGAACGTGAACGCCTTG+TGG 0.614870 6_4:-9716273 Msa0975940:CDS
AAAGTTTGCTTCAAAAGGAG+CGG 0.615802 6_4:-9718433 Msa0975940:CDS
TTCTCAACAGTCAGTCCCAA+AGG 0.615847 6_4:-9715709 Msa0975940:CDS
TATGATTATCAGTACAACAT+GGG 0.616422 6_4:-9719910 Msa0975940:CDS
GGACTGTGGGGAAGTTGTCA+GGG 0.618125 6_4:-9716201 Msa0975940:CDS
AAAGTTGAAATCATTGAAGG+AGG 0.620070 6_4:-9717152 Msa0975940:CDS
GATCTCAACCGTAAAGTCTG+TGG 0.620220 6_4:-9713742 Msa0975940:CDS
ATCTCCTCTTGAGAACTCAA+AGG 0.620651 6_4:-9716114 Msa0975940:CDS
ATGGGAAGAAGTCAAGTCTG+AGG 0.620671 6_4:-9716414 Msa0975940:CDS
TGAGATCTGCACTAGAGTCG+TGG 0.621822 6_4:+9713758 None:intergenic
GAGGAAGCTACGGCAAAGAG+AGG 0.623939 6_4:-9718233 Msa0975940:CDS
CGACGCGGTGTGAATGATGC+CGG 0.624761 6_4:+9721159 None:intergenic
AATGATGCCGGTGTACCGAT+AGG 0.624939 6_4:+9721171 None:intergenic
CTTACGTCTTATGCCGCCTG+AGG 0.630170 6_4:+9715340 None:intergenic
TGAAGCTTACTCAAGATGAG+AGG 0.633299 6_4:-9716970 Msa0975940:CDS
ATCCGATAACATTGCCAGAG+AGG 0.633599 6_4:-9715805 Msa0975940:CDS
TTGATGAAGCGGTAATGAAG+AGG 0.634571 6_4:-9720969 Msa0975940:CDS
GGATTCTGCAAAGAAAACGC+TGG 0.634610 6_4:-9717909 Msa0975940:CDS
CAGTACATTTAATTTGCCAG+AGG 0.636039 6_4:+9713207 None:intergenic
AAGAGAGAGAAAATTTCAGG+AGG 0.637039 6_4:-9716492 Msa0975940:CDS
CAAACTTCTAAGATTGCTGA+AGG 0.639219 6_4:-9715480 Msa0975940:CDS
TGCAGAAGCCAGGCTTGCTG+AGG 0.640040 6_4:-9718510 Msa0975940:CDS
CATTTGCGGAACACAGACAC+AGG 0.642105 6_4:+9716047 None:intergenic
AGCTTCTGGTGGTAAACAGG+AGG 0.643491 6_4:-9713832 Msa0975940:CDS
CCGATAACATTGCCAGAGAG+GGG 0.644054 6_4:-9715803 Msa0975940:CDS
AGAAGCGTTACAACCTCAGG+CGG 0.644751 6_4:-9715353 Msa0975940:CDS
ACCTGACAGTAAAGAGTGTG+GGG 0.645197 6_4:-9716153 Msa0975940:CDS
TGGTGCTACAACCAACTCTG+TGG 0.647168 6_4:-9713571 Msa0975940:CDS
AGGAGTGGGAGAGGAAGCTA+CGG 0.647313 6_4:-9718243 Msa0975940:CDS
GACGTTGAAAATGAGGACGA+GGG 0.648902 6_4:-9713489 Msa0975940:CDS
ACGTTGAAAATGAGGACGAG+GGG 0.656363 6_4:-9713488 Msa0975940:CDS
AGGTTGGTCGACAAAGACCT+GGG 0.661364 6_4:-9715689 Msa0975940:CDS
TTACCTGACAGTAAAGAGTG+TGG 0.661921 6_4:-9716155 Msa0975940:CDS
ACGACAAATAGCAGATGGAG+TGG 0.664564 6_4:-9715859 Msa0975940:CDS
TACCGGCGATGATGTTGTGG+TGG 0.665593 6_4:-9721040 Msa0975940:CDS
TTATGATTATCAGTACAACA+TGG 0.667050 6_4:-9719911 Msa0975940:CDS
AATCTTCATGCATCTCACGT+TGG 0.667214 6_4:+9716330 None:intergenic
ACTAAACGAACGATTAATTG+CGG 0.671015 6_4:-9721329 Msa0975940:five_prime_UTR
GTGTAGCACTTTCTTCAATG+CGG 0.671316 6_4:+9713547 None:intergenic
TTGAGTTTAGAAAAGCAGTG+TGG 0.671606 6_4:-9719733 Msa0975940:CDS
AGTCAACCATAGGGAAACCA+AGG 0.673395 6_4:-9717245 Msa0975940:CDS
CAGAATGCTGCTGATAGTGA+AGG 0.678423 6_4:-9715453 Msa0975940:CDS
AACATTTACATCAGACTCAG+GGG 0.678589 6_4:+9715950 None:intergenic
GGAGGAGGAGGATCCCGGTG+AGG 0.679863 6_4:-9713442 Msa0975940:CDS
CAGGAATTGCAAGGACTGTG+GGG 0.681894 6_4:-9716213 Msa0975940:CDS
AGAACTAGCTGAAACTCAGG+AGG 0.683450 6_4:-9719833 Msa0975940:CDS
GCTACATGGAAAGTTTGACA+GGG 0.685346 6_4:-9715746 Msa0975940:CDS
AAGTGCATTTGGCTTTACTG+TGG 0.686127 6_4:-9714293 Msa0975940:CDS
TACATGGAAAGTTTGACAGG+GGG 0.687457 6_4:-9715744 Msa0975940:CDS
AAAGCGGAAATCTCTCGCTG+AGG 0.695563 6_4:-9717311 Msa0975940:CDS
AATGTACTGCTTAGGCACAG+AGG 0.697733 6_4:-9713193 Msa0975940:three_prime_UTR
TCTATATTAGGAGATGACAC+AGG 0.699986 6_4:+9715906 None:intergenic
TGAGGAGTTTAGCAGCAAGG+AGG 0.705004 6_4:-9717293 Msa0975940:CDS
CAGACAGTACAACAGCTGGT+GGG 0.705347 6_4:-9715425 Msa0975940:CDS
CGTTGAAAATGAGGACGAGG+GGG 0.709289 6_4:-9713487 Msa0975940:CDS
AGAGACAATGTTGATGACAA+TGG 0.709550 6_4:-9713591 Msa0975940:CDS
GTATCAGTCAAAGAACCCAA+CGG 0.709802 6_4:+9721060 None:intergenic
GGGAAGAAGTCAAGTCTGAG+GGG 0.719282 6_4:-9716412 Msa0975940:CDS
TCCACCCACACAAGTTACAG+GGG 0.722043 6_4:-9715376 Msa0975940:CDS
CTACATGGAAAGTTTGACAG+GGG 0.722540 6_4:-9715745 Msa0975940:CDS
TCAGTCAAAGAACCCAACGG+CGG 0.753226 6_4:+9721063 None:intergenic
TTGGTCGACAAAGACCTGGG+AGG 0.780419 6_4:-9715686 Msa0975940:CDS
GGTGTGGCACCAATTCGACG+CGG 0.794836 6_4:+9721144 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTTTTTGTTTTGAA+TGG - chr6_4:9713566-9713585 Msa0975940:CDS 10.0%
!!! TATTCTGTTTTTTTTTTTTT+TGG - chr6_4:9713636-9713655 Msa0975940:intron 10.0%
!!! ATTCTGTTTTTTTTTTTTTT+GGG - chr6_4:9713637-9713656 Msa0975940:intron 10.0%
!!! TTTTACAGATTATAATTTAA+AGG + chr6_4:9714389-9714408 None:intergenic 10.0%
!!! CATAATTGAATTTTAAATAT+TGG - chr6_4:9715343-9715362 Msa0975940:intron 10.0%
!!! TATTCATAAAATTTAAAACA+AGG + chr6_4:9716067-9716086 None:intergenic 10.0%
!! TAATTCTTTATTAAAAGAAA+AGG - chr6_4:9716361-9716380 Msa0975940:CDS 10.0%
!!! TAAAGGTAAAAATATTTTTT+TGG - chr6_4:9721196-9721215 Msa0975940:CDS 10.0%
!!! TTTTTTTGTGAATTAGATAA+CGG - chr6_4:9713919-9713938 Msa0975940:intron 15.0%
!! TTAAAAGAAATGTCAATATA+CGG - chr6_4:9714336-9714355 Msa0975940:intron 15.0%
!! TAATCTGTAAAATAATTTCA+TGG - chr6_4:9714397-9714416 Msa0975940:intron 15.0%
!! ATAATCTTGTATAAAAAATG+TGG - chr6_4:9715180-9715199 Msa0975940:intron 15.0%
!!! AATTTTAAATATTGGATATC+CGG - chr6_4:9715351-9715370 Msa0975940:CDS 15.0%
!! TAAAATTATATTATTTGGAC+TGG + chr6_4:9716738-9716757 None:intergenic 15.0%
!!! TTAGTTTTTTGAAATTTACT+TGG - chr6_4:9716829-9716848 Msa0975940:CDS 15.0%
!!! AGTTATTACTTTTAAACTAT+CGG + chr6_4:9716858-9716877 None:intergenic 15.0%
!! AATGTTAATATAGAAAAAGT+AGG - chr6_4:9718517-9718536 Msa0975940:CDS 15.0%
!!! TGTTTTATATATAGATAGAT+TGG - chr6_4:9719299-9719318 Msa0975940:intron 15.0%
!!! ACTTTTCTTTATTTCTTATT+GGG + chr6_4:9719384-9719403 None:intergenic 15.0%
!!! AACTTTTCTTTATTTCTTAT+TGG + chr6_4:9719385-9719404 None:intergenic 15.0%
!!! TTAATTTTGGATTTTTTTAC+TGG - chr6_4:9720122-9720141 Msa0975940:intron 15.0%
!!! TAATTTTGGATTTTTTTACT+GGG - chr6_4:9720123-9720142 Msa0975940:intron 15.0%
!!! TTTTTTTTTGGGTTTATAGA+TGG - chr6_4:9713648-9713667 Msa0975940:intron 20.0%
!! ATGTAGAATCTTTAGATTAA+AGG - chr6_4:9713800-9713819 Msa0975940:CDS 20.0%
!!! GTTAGATAAGTTGTTTTTTT+AGG - chr6_4:9713895-9713914 Msa0975940:intron 20.0%
!!! TTTTTTGTGAATTAGATAAC+GGG - chr6_4:9713920-9713939 Msa0975940:intron 20.0%
!!! GTTATTGTAACAAGTTATTT+TGG - chr6_4:9714448-9714467 Msa0975940:intron 20.0%
!! ATTAACAATTGATTAACTTC+TGG - chr6_4:9714493-9714512 Msa0975940:intron 20.0%
!!! CTTTGTTTTTCTTTTTACAT+TGG - chr6_4:9714830-9714849 Msa0975940:intron 20.0%
!! TTATATCTATCTAATCATAG+GGG + chr6_4:9715415-9715434 None:intergenic 20.0%
!! CTTATATCTATCTAATCATA+GGG + chr6_4:9715416-9715435 None:intergenic 20.0%
!! ACTTATATCTATCTAATCAT+AGG + chr6_4:9715417-9715436 None:intergenic 20.0%
!!! ATTGCTTTCATTTGATTTTA+AGG - chr6_4:9715614-9715633 Msa0975940:CDS 20.0%
!! ATTTCACTTTATACTGTTTA+TGG - chr6_4:9715661-9715680 Msa0975940:CDS 20.0%
!!! CAAATTACAAGTTTTACAAA+AGG + chr6_4:9716470-9716489 None:intergenic 20.0%
!! TTAAAAATAATCACCACTTA+TGG - chr6_4:9716886-9716905 Msa0975940:CDS 20.0%
!!! AAGTTATGTAAATTTGCTTT+CGG + chr6_4:9716975-9716994 None:intergenic 20.0%
!! TATGGAAGATAATTTAAAGA+AGG - chr6_4:9717751-9717770 Msa0975940:intron 20.0%
!! TGAAAAGGTAAAAAATGAAA+AGG - chr6_4:9717844-9717863 Msa0975940:intron 20.0%
!! TATATTGGCATTAATTCTAA+AGG - chr6_4:9719243-9719262 Msa0975940:intron 20.0%
!! TAAGAAATAAAGAAAAGTTG+TGG - chr6_4:9719386-9719405 Msa0975940:intron 20.0%
!!! TTTTTTTTGTTGCAAAAGTT+TGG - chr6_4:9719556-9719575 Msa0975940:intron 20.0%
!!! ACAATTTTCTTACAAATCTT+GGG + chr6_4:9719845-9719864 None:intergenic 20.0%
!!! TACAATTTTCTTACAAATCT+TGG + chr6_4:9719846-9719865 None:intergenic 20.0%
!! AGATTTGTAAGAAAATTGTA+TGG - chr6_4:9719846-9719865 Msa0975940:CDS 20.0%
!!! AGTTCTAAAACTTACTATTT+TGG - chr6_4:9719917-9719936 Msa0975940:intron 20.0%
!! TGCTAGATTGATTATTTATA+TGG - chr6_4:9719955-9719974 Msa0975940:intron 20.0%
!!! GGCATTTGAATTATTAATTT+TGG - chr6_4:9720109-9720128 Msa0975940:intron 20.0%
!! AGTAAGATATTCTGTATTAT+TGG + chr6_4:9720194-9720213 None:intergenic 20.0%
!! ATTAAATCAACCATCAATAA+AGG + chr6_4:9720773-9720792 None:intergenic 20.0%
!!! TTATTGATGGTTGATTTAAT+TGG - chr6_4:9720773-9720792 Msa0975940:intron 20.0%
!!! CGTTTGAGATTTATTAATAA+AGG - chr6_4:9721179-9721198 Msa0975940:CDS 20.0%
!! TATCTTGAATTCATCTTTTC+CGG - chr6_4:9713203-9713222 Msa0975940:three_prime_UTR 25.0%
!!! TTGTTTTGAATGGTTTTTCT+AGG - chr6_4:9713576-9713595 Msa0975940:CDS 25.0%
!!! TGTTTTGAATGGTTTTTCTA+GGG - chr6_4:9713577-9713596 Msa0975940:CDS 25.0%
!! GTTTATAGATGGTTTTTCTA+GGG - chr6_4:9713659-9713678 Msa0975940:intron 25.0%
! CATCAATATACTACAAAACT+CGG + chr6_4:9713736-9713755 None:intergenic 25.0%
! TAGATATTACTGTAACTTTG+AGG - chr6_4:9713759-9713778 Msa0975940:CDS 25.0%
!!! TTTGTTAGTTGTTGTTTTGT+TGG - chr6_4:9713967-9713986 Msa0975940:intron 25.0%
!!! CAATAGTTTTGCAAGTATTT+AGG - chr6_4:9714055-9714074 Msa0975940:intron 25.0%
! AATATTGTCATGATATTGCA+AGG - chr6_4:9714274-9714293 Msa0975940:CDS 25.0%
! TTATGATTATCAGTACAACA+TGG - chr6_4:9714539-9714558 Msa0975940:intron 25.0%
! TATGATTATCAGTACAACAT+GGG - chr6_4:9714540-9714559 Msa0975940:intron 25.0%
! AGTCTATAATTGTGTTGAAT+TGG - chr6_4:9714775-9714794 Msa0975940:intron 25.0%
!!! CTTTTTACATTGGTTAGTAT+TGG - chr6_4:9714840-9714859 Msa0975940:intron 25.0%
! ATAGTTCATAGTGAAGTTAA+AGG + chr6_4:9714936-9714955 None:intergenic 25.0%
! ATGAAAAGACAACCAATTAA+TGG + chr6_4:9715507-9715526 None:intergenic 25.0%
!!! TTCATTGTGTTTGCTATTTT+AGG - chr6_4:9715522-9715541 Msa0975940:CDS 25.0%
! AAACACAAGACTAAATATGA+TGG + chr6_4:9716097-9716116 None:intergenic 25.0%
! AATCAGTATTCTACAAACAA+AGG - chr6_4:9716174-9716193 Msa0975940:CDS 25.0%
! ATCAGTATTCTACAAACAAA+GGG - chr6_4:9716175-9716194 Msa0975940:CDS 25.0%
!!! GTAAAACTTGTAATTTGCTT+TGG - chr6_4:9716473-9716492 Msa0975940:CDS 25.0%
!!! TTTTGGTCTTTCCATATTTA+TGG - chr6_4:9716496-9716515 Msa0975940:CDS 25.0%
! TCATAACCATACCATAAATA+TGG + chr6_4:9716510-9716529 None:intergenic 25.0%
! ATTCAATTTCTTTCCATAAG+TGG + chr6_4:9716902-9716921 None:intergenic 25.0%
! ATTATATATCACAGGACTAT+GGG + chr6_4:9716945-9716964 None:intergenic 25.0%
! GAAAACACATTATATATCAC+AGG + chr6_4:9716953-9716972 None:intergenic 25.0%
! CTTGTACATATATTTCTTAC+AGG - chr6_4:9717037-9717056 Msa0975940:CDS 25.0%
! TACATATATTTCTTACAGGA+AGG - chr6_4:9717041-9717060 Msa0975940:CDS 25.0%
! ACATATATTTCTTACAGGAA+GGG - chr6_4:9717042-9717061 Msa0975940:CDS 25.0%
! AACAAAGTTGAAATCATTGA+AGG - chr6_4:9717295-9717314 Msa0975940:CDS 25.0%
! AGAATTTAAATGCTGAACTT+GGG - chr6_4:9717399-9717418 Msa0975940:intron 25.0%
! GCAGAAAGATTTAATTATGA+AGG - chr6_4:9717559-9717578 Msa0975940:intron 25.0%
! TAGTGATTCAATTAAACAAG+AGG - chr6_4:9717808-9717827 Msa0975940:intron 25.0%
!! GGAATTTCTTTTATCTGAAA+AGG - chr6_4:9717829-9717848 Msa0975940:intron 25.0%
!! AAAAAATGAAAAGGCACAAA+TGG - chr6_4:9717853-9717872 Msa0975940:CDS 25.0%
!! AAATGGTTCAAGATTTTGAA+TGG - chr6_4:9717870-9717889 Msa0975940:CDS 25.0%
! TTGAGAATGAAATTCAGAAA+AGG - chr6_4:9717906-9717925 Msa0975940:CDS 25.0%
!!! CTGGTTGTATTTATTTTTTG+CGG - chr6_4:9719202-9719221 Msa0975940:intron 25.0%
!! GTTTTCTTGGATGTTTATAT+TGG - chr6_4:9719228-9719247 Msa0975940:intron 25.0%
!! TTTATTTCTTATTGGGAAGA+GGG + chr6_4:9719377-9719396 None:intergenic 25.0%
! ACTATATTAGAAACTGAAAG+GGG + chr6_4:9719453-9719472 None:intergenic 25.0%
! CACTATATTAGAAACTGAAA+GGG + chr6_4:9719454-9719473 None:intergenic 25.0%
! ACACTATATTAGAAACTGAA+AGG + chr6_4:9719455-9719474 None:intergenic 25.0%
! TTGCAACAAAAAAAAAAAGC+AGG + chr6_4:9719551-9719570 None:intergenic 25.0%
! TAATAATTATTACGTTCCCA+CGG - chr6_4:9719580-9719599 Msa0975940:intron 25.0%
! TTGGCTAAATCAATTAACAT+AGG + chr6_4:9719721-9719740 None:intergenic 25.0%
! TTGACTAATCAATTAACAGT+TGG + chr6_4:9719740-9719759 None:intergenic 25.0%
! TACAAATCTTGGGATAATTT+GGG + chr6_4:9719835-9719854 None:intergenic 25.0%
! TTACAAATCTTGGGATAATT+TGG + chr6_4:9719836-9719855 None:intergenic 25.0%
! AGAAAATTGTATGGTTACAA+CGG - chr6_4:9719855-9719874 Msa0975940:CDS 25.0%
!!! TTTGTACAGTTTTTTGATTG+AGG - chr6_4:9720087-9720106 Msa0975940:intron 25.0%
!!! TTGTACAGTTTTTTGATTGA+GGG - chr6_4:9720088-9720107 Msa0975940:intron 25.0%
! AATATCTTACTGTGTGTAAT+AGG - chr6_4:9720203-9720222 Msa0975940:intron 25.0%
! CATTAAATAGTTTCTCAATC+GGG + chr6_4:9720243-9720262 None:intergenic 25.0%
! GCATTAAATAGTTTCTCAAT+CGG + chr6_4:9720244-9720263 None:intergenic 25.0%
! ATTGAGAAACTATTTAATGC+AGG - chr6_4:9720244-9720263 Msa0975940:intron 25.0%
! TTGGTATTTCAAACTGTAAA+AGG + chr6_4:9720840-9720859 None:intergenic 25.0%
! TTAACCCAAAGATTAGATTA+TGG + chr6_4:9721147-9721166 None:intergenic 25.0%
! ATAAATCTCAAACGAAAACA+TGG + chr6_4:9721173-9721192 None:intergenic 25.0%
!! ATTTTCCATTCTAATGCTAA+TGG - chr6_4:9721280-9721299 Msa0975940:five_prime_UTR 25.0%
! ATTATCCATTAGCATTAGAA+TGG + chr6_4:9721288-9721307 None:intergenic 25.0%
ACTAAACGAACGATTAATTG+CGG - chr6_4:9713121-9713140 Msa0975940:three_prime_UTR 30.0%
GATATCAAACACTCGATTTA+GGG + chr6_4:9713187-9713206 None:intergenic 30.0%
AGATATCAAACACTCGATTT+AGG + chr6_4:9713152-9713171 None:intergenic 30.0%
! GGTTTATAGATGGTTTTTCT+AGG - chr6_4:9713658-9713677 Msa0975940:intron 30.0%
!!! TTTCTAGGGTATGTTTTTCT+AGG - chr6_4:9713673-9713692 Msa0975940:intron 30.0%
CTTGCAAAACTATTGACAAA+TGG + chr6_4:9714050-9714069 None:intergenic 30.0%
! AGTTTTGCAAGTATTTAGGA+TGG - chr6_4:9714059-9714078 Msa0975940:intron 30.0%
!! GTTTTGCAAGTATTTAGGAT+GGG - chr6_4:9714060-9714079 Msa0975940:intron 30.0%
!! TTTTGCAAGTATTTAGGATG+GGG - chr6_4:9714061-9714080 Msa0975940:intron 30.0%
AAAATTCAAGGAAATAACCC+AGG + chr6_4:9714200-9714219 None:intergenic 30.0%
GAAATTGAATCACATGGTTT+AGG + chr6_4:9714224-9714243 None:intergenic 30.0%
AACTTCTCATTATTCTACAG+TGG + chr6_4:9714318-9714337 None:intergenic 30.0%
AAAGAAATGTCAATATACGG+TGG - chr6_4:9714339-9714358 Msa0975940:intron 30.0%
TACTGATAATCATAAAGCTG+CGG + chr6_4:9714534-9714553 None:intergenic 30.0%
! TCAAATTTTCCTCTCGTTTT+TGG + chr6_4:9714689-9714708 None:intergenic 30.0%
AAAAACGAGAGGAAAATTTG+AGG - chr6_4:9714688-9714707 Msa0975940:intron 30.0%
ATAGTGAAGTTAAAGGAACA+GGG + chr6_4:9714929-9714948 None:intergenic 30.0%
TGTAAAAACATCGTATATGC+TGG - chr6_4:9715108-9715127 Msa0975940:intron 30.0%
ATGTCAAGGACAAAAATGTA+GGG + chr6_4:9715149-9715168 None:intergenic 30.0%
TTCCAACAAAAACACATGTT+TGG - chr6_4:9715244-9715263 Msa0975940:intron 30.0%
TTGCAAAAAAATTTGTGCAC+CGG - chr6_4:9715298-9715317 Msa0975940:intron 30.0%
TCTCAATTATGCATTCTAAC+CGG + chr6_4:9715320-9715339 None:intergenic 30.0%
! ACTAAAGTATCAAGTATGAC+CGG + chr6_4:9715373-9715392 None:intergenic 30.0%
! CTTTAGTCAAAGTACTTCTT+AGG - chr6_4:9715386-9715405 Msa0975940:CDS 30.0%
GTATCATTGCAGTATATAAC+AGG + chr6_4:9715456-9715475 None:intergenic 30.0%
!! TTTTAGGTGTTCATCTTGAA+TGG - chr6_4:9715538-9715557 Msa0975940:CDS 30.0%
! ACTTTTATCACAGAGTTTTG+AGG - chr6_4:9715590-9715609 Msa0975940:CDS 30.0%
GCTAGATAAAGCAAATGAAT+TGG - chr6_4:9715868-9715887 Msa0975940:CDS 30.0%
AGATAAAGCAAATGAATTGG+TGG - chr6_4:9715871-9715890 Msa0975940:CDS 30.0%
! TTTAAAACAAGGTCCATACT+CGG + chr6_4:9716056-9716075 None:intergenic 30.0%
GTGACTCAATTAATTGAAGT+TGG - chr6_4:9716118-9716137 Msa0975940:CDS 30.0%
! TACAAGTTTTACAAAAGGCA+AGG + chr6_4:9716465-9716484 None:intergenic 30.0%
!!! CTTGTAATTTGCTTTGGTTT+TGG - chr6_4:9716479-9716498 Msa0975940:CDS 30.0%
GTCTTTCCATATTTATGGTA+TGG - chr6_4:9716501-9716520 Msa0975940:CDS 30.0%
AGAGAAAGAATTACATGAAC+TGG - chr6_4:9716571-9716590 Msa0975940:CDS 30.0%
!! ATTATTTGGACTGGTTTGTT+TGG + chr6_4:9716729-9716748 None:intergenic 30.0%
!! AGTTGATTTGGTTTGAGTTT+GGG + chr6_4:9716767-9716786 None:intergenic 30.0%
CATTATATATCACAGGACTA+TGG + chr6_4:9716946-9716965 None:intergenic 30.0%
AAAGTTGAAATCATTGAAGG+AGG - chr6_4:9717298-9717317 Msa0975940:CDS 30.0%
GAGAATTTAAATGCTGAACT+TGG - chr6_4:9717398-9717417 Msa0975940:intron 30.0%
TGAAATTCAGAAAAGGAAAG+AGG - chr6_4:9717913-9717932 Msa0975940:CDS 30.0%
TAGAATCTGTGTTAGTACTA+GGG + chr6_4:9718453-9718472 None:intergenic 30.0%
ATAGAATCTGTGTTAGTACT+AGG + chr6_4:9718454-9718473 None:intergenic 30.0%
AGTACTAACACAGATTCTAT+TGG - chr6_4:9718454-9718473 Msa0975940:CDS 30.0%
ATTGGTACTTCAAATATAGC+TGG - chr6_4:9718472-9718491 Msa0975940:CDS 30.0%
TTGGTACTTCAAATATAGCT+GGG - chr6_4:9718473-9718492 Msa0975940:CDS 30.0%
TAACATTTACATCAGACTCA+GGG + chr6_4:9718504-9718523 None:intergenic 30.0%
TTAACATTTACATCAGACTC+AGG + chr6_4:9718505-9718524 None:intergenic 30.0%
!!! TTTTTTGCGGATTGTTTTCT+TGG - chr6_4:9719215-9719234 Msa0975940:intron 30.0%
! CTTGCTAATTTTCACACTAA+AGG - chr6_4:9719324-9719343 Msa0975940:intron 30.0%
! TTATTTCTTATTGGGAAGAG+GGG + chr6_4:9719376-9719395 None:intergenic 30.0%
! CTTTATTTCTTATTGGGAAG+AGG + chr6_4:9719378-9719397 None:intergenic 30.0%
CTATATTAGAAACTGAAAGG+GGG + chr6_4:9719452-9719471 None:intergenic 30.0%
! AAGTCATCTGAATTGATTCT+TGG - chr6_4:9719486-9719505 Msa0975940:intron 30.0%
! AGTCATCTGAATTGATTCTT+GGG - chr6_4:9719487-9719506 Msa0975940:intron 30.0%
AATAATTATTACGTTCCCAC+GGG - chr6_4:9719581-9719600 Msa0975940:intron 30.0%
! TCTTTTATAAAAGTGAGGTG+TGG - chr6_4:9719604-9719623 Msa0975940:intron 30.0%
GTCTTCTTGTGTTTATTACA+AGG + chr6_4:9719658-9719677 None:intergenic 30.0%
!! AGTGTATGTTTAGTTTGCAA+TGG - chr6_4:9719789-9719808 Msa0975940:CDS 30.0%
!!! TTTTTTACTGGGTTATCTGA+AGG - chr6_4:9720134-9720153 Msa0975940:intron 30.0%
TATTGTTTGTGTCTTTCATG+TGG - chr6_4:9720283-9720302 Msa0975940:intron 30.0%
AGGCATAACATTCTATCAAA+CGG + chr6_4:9720463-9720482 None:intergenic 30.0%
AATCAGTCTTCCTTTATTGA+TGG - chr6_4:9720760-9720779 Msa0975940:intron 30.0%
! CATCCTCATTCCTTTTAAAT+AGG - chr6_4:9721114-9721133 Msa0975940:CDS 30.0%
TCTCCTATTTAAAAGGAATG+AGG + chr6_4:9721120-9721139 None:intergenic 30.0%
AGTAGCCATAATCTAATCTT+TGG - chr6_4:9721139-9721158 Msa0975940:CDS 30.0%
GTAGCCATAATCTAATCTTT+GGG - chr6_4:9721140-9721159 Msa0975940:CDS 30.0%
GCAAATTAAATGTACTGCTT+AGG - chr6_4:9721249-9721268 Msa0975940:five_prime_UTR 30.0%
! CGAGTGTTTGATATCTTTTC+CGG - chr6_4:9713156-9713175 Msa0975940:three_prime_UTR 35.0%
! CTTCTAGTTATGCTGAAGAT+TGG - chr6_4:9713433-9713452 Msa0975940:CDS 35.0%
!! GGGTATGTTTTTCTAGGAAT+TGG - chr6_4:9713679-9713698 Msa0975940:intron 35.0%
!! TTTTTCTAGGAATTGGTCTC+CGG - chr6_4:9713686-9713705 Msa0975940:intron 35.0%
ATACTACAAAACTCGGTATC+CGG + chr6_4:9713729-9713748 None:intergenic 35.0%
GGTTGTTACTATTGAGTTTG+AGG - chr6_4:9713988-9714007 Msa0975940:intron 35.0%
! GGGGATATATTCTCTTTTGT+CGG - chr6_4:9714080-9714099 Msa0975940:intron 35.0%
! TATTCTCTTTTGTCGGAACT+AGG - chr6_4:9714087-9714106 Msa0975940:intron 35.0%
TACCATCTCTCTCTACTTAT+AGG + chr6_4:9714127-9714146 None:intergenic 35.0%
CATGGTTTAGGCAAAATTCA+AGG + chr6_4:9714212-9714231 None:intergenic 35.0%
GCAAGAGAAATTGAATCACA+TGG + chr6_4:9714230-9714249 None:intergenic 35.0%
ATTGCAAGGAAATCTTACCA+AGG - chr6_4:9714288-9714307 Msa0975940:CDS 35.0%
TATTCTACAGTGGTAATCCT+TGG + chr6_4:9714308-9714327 None:intergenic 35.0%
TAATCATCGACAAAGTAACG+TGG + chr6_4:9714477-9714496 None:intergenic 35.0%
ACTCTTGCTTCTCAATAAGA+AGG + chr6_4:9714569-9714588 None:intergenic 35.0%
TTCTTATTGAGAAGCAAGAG+TGG - chr6_4:9714568-9714587 Msa0975940:intron 35.0%
TTGAGTTTAGAAAAGCAGTG+TGG - chr6_4:9714717-9714736 Msa0975940:intron 35.0%
GTATTGGATACGTTGATCAT+AGG - chr6_4:9714856-9714875 Msa0975940:intron 35.0%
!! TTGATCATAGGCTTTGAACT+GGG - chr6_4:9714868-9714887 Msa0975940:intron 35.0%
TAGTGAAGTTAAAGGAACAG+GGG + chr6_4:9714928-9714947 None:intergenic 35.0%
CATAGTGAAGTTAAAGGAAC+AGG + chr6_4:9714930-9714949 None:intergenic 35.0%
CATAAGAAGACAAAACCCAA+AGG + chr6_4:9715014-9715033 None:intergenic 35.0%
GATGTCAAGGACAAAAATGT+AGG + chr6_4:9715150-9715169 None:intergenic 35.0%
! TTTTTGTCCTTGACATCATC+AGG - chr6_4:9715153-9715172 Msa0975940:intron 35.0%
!! CTCCAAACATGTGTTTTTGT+TGG + chr6_4:9715249-9715268 None:intergenic 35.0%
CAACAAAAACACATGTTTGG+AGG - chr6_4:9715247-9715266 Msa0975940:intron 35.0%
CAAGTATAATGCCCTTTGTA+CGG + chr6_4:9715276-9715295 None:intergenic 35.0%
CTTTAGTCAAACTACTTCCT+AGG - chr6_4:9715475-9715494 Msa0975940:CDS 35.0%
ACTCTGTGATAAAAGTCTCA+AGG + chr6_4:9715586-9715605 None:intergenic 35.0%
AAAGCAAATGAATTGGTGGA+TGG - chr6_4:9715875-9715894 Msa0975940:CDS 35.0%
! TCGTGAAAGTTTGCTTCAAA+AGG - chr6_4:9716012-9716031 Msa0975940:CDS 35.0%
! AAAGTTTGCTTCAAAAGGAG+CGG - chr6_4:9716017-9716036 Msa0975940:CDS 35.0%
CAAACAAAGGGAAGATTTGA+AGG - chr6_4:9716187-9716206 Msa0975940:CDS 35.0%
ATGGTTATGATTGCAGAAAG+TGG - chr6_4:9716520-9716539 Msa0975940:CDS 35.0%
GTAACTCCAAACCATAACAA+TGG + chr6_4:9716688-9716707 None:intergenic 35.0%
!! GAGTTGATTTGGTTTGAGTT+TGG + chr6_4:9716768-9716787 None:intergenic 35.0%
!! ATATTGACCTCAAAGGTACT+AGG + chr6_4:9716804-9716823 None:intergenic 35.0%
!! TAGTACCTTTGAGGTCAATA+TGG - chr6_4:9716803-9716822 Msa0975940:CDS 35.0%
AATCACCATATTGACCTCAA+AGG + chr6_4:9716811-9716830 None:intergenic 35.0%
TTTGCTCATCAAGAAGTTTC+TGG + chr6_4:9717070-9717089 None:intergenic 35.0%
TGATGAGCAAAAACATACTC+TGG - chr6_4:9717079-9717098 Msa0975940:CDS 35.0%
AGCTTGAAATGGAACAAAAG+CGG - chr6_4:9717123-9717142 Msa0975940:CDS 35.0%
TACGAAGTCTGAGAGAATAA+AGG - chr6_4:9717253-9717272 Msa0975940:CDS 35.0%
GAGAATAAAGGAGCAAGATA+AGG - chr6_4:9717265-9717284 Msa0975940:CDS 35.0%
GAAAATAAAAGAGAGAGAGC+TGG - chr6_4:9717334-9717353 Msa0975940:CDS 35.0%
TTTGCAATTGGAACTAAAGC+AGG - chr6_4:9717517-9717536 Msa0975940:intron 35.0%
GCTTAGGTTTGAGAAAGAAT+GGG - chr6_4:9717607-9717626 Msa0975940:intron 35.0%
TGAAGAACAGTGAAGAAGAA+AGG - chr6_4:9717708-9717727 Msa0975940:intron 35.0%
GAAAAGAGAGAAGCAAGATA+TGG - chr6_4:9717733-9717752 Msa0975940:intron 35.0%
GGAAAGAGAGAGAAAATTTC+AGG - chr6_4:9717955-9717974 Msa0975940:intron 35.0%
AAGAGAGAGAAAATTTCAGG+AGG - chr6_4:9717958-9717977 Msa0975940:intron 35.0%
CACGTTCTTTCTTTACTTTC+TGG + chr6_4:9718168-9718187 None:intergenic 35.0%
CAAACCATTCTGGATCTAAA+TGG - chr6_4:9718380-9718399 Msa0975940:intron 35.0%
AGGGGATAAACTGAAAATCT+TGG + chr6_4:9718434-9718453 None:intergenic 35.0%
AGAATCTGTGTTAGTACTAG+GGG + chr6_4:9718452-9718471 None:intergenic 35.0%
AACATTTACATCAGACTCAG+GGG + chr6_4:9718503-9718522 None:intergenic 35.0%
TCTATATTAGGAGATGACAC+AGG + chr6_4:9718547-9718566 None:intergenic 35.0%
GTGTCATCTCCTAATATAGA+AGG - chr6_4:9718547-9718566 Msa0975940:CDS 35.0%
ACTATCGGTCCTTCTATATT+AGG + chr6_4:9718559-9718578 None:intergenic 35.0%
CGTTCTTGAAGAGTAACTAT+CGG + chr6_4:9718574-9718593 None:intergenic 35.0%
!! TTTGCAAACTCGTTTTTCCT+AGG + chr6_4:9718855-9718874 None:intergenic 35.0%
!! CAAACTTCTAAGATTGCTGA+AGG - chr6_4:9718970-9718989 Msa0975940:intron 35.0%
TAAGACGTAAGTTTAGTCTC+AGG - chr6_4:9719122-9719141 Msa0975940:intron 35.0%
AAGACGTAAGTTTAGTCTCA+GGG - chr6_4:9719123-9719142 Msa0975940:intron 35.0%
! CACTTTTATAAAAGACCCGT+GGG + chr6_4:9719599-9719618 None:intergenic 35.0%
!! TCACTTTTATAAAAGACCCG+TGG + chr6_4:9719600-9719619 None:intergenic 35.0%
! ACGGGTCTTTTATAAAAGTG+AGG - chr6_4:9719599-9719618 Msa0975940:intron 35.0%
TATGATCTGCGGAGAAAATA+TGG + chr6_4:9719692-9719711 None:intergenic 35.0%
ATAGGAACAGTTATGATCTG+CGG + chr6_4:9719703-9719722 None:intergenic 35.0%
ATGGAAAAACTGCAAGTCTT+TGG - chr6_4:9719808-9719827 Msa0975940:CDS 35.0%
AAATACGACAACACCTAATG+CGG + chr6_4:9719895-9719914 None:intergenic 35.0%
AACTAGATAACCAGGATTGA+GGG + chr6_4:9720069-9720088 None:intergenic 35.0%
AAACTAGATAACCAGGATTG+AGG + chr6_4:9720070-9720089 None:intergenic 35.0%
ACTGTACAAACTAGATAACC+AGG + chr6_4:9720077-9720096 None:intergenic 35.0%
! TTATCTGAAGGAAGTGCATT+TGG - chr6_4:9720146-9720165 Msa0975940:intron 35.0%
ATCTTACTGTGTGTAATAGG+AGG - chr6_4:9720206-9720225 Msa0975940:intron 35.0%
GAGAAACTATTTAATGCAGG+AGG - chr6_4:9720247-9720266 Msa0975940:intron 35.0%
!! TGACAGTTTTATGTTGACTG+TGG - chr6_4:9720407-9720426 Msa0975940:intron 35.0%
TTTGATCTCCACAGACTTTA+CGG + chr6_4:9720719-9720738 None:intergenic 35.0%
! TCAAAGATGATCGAGTTGTA+AGG - chr6_4:9720734-9720753 Msa0975940:intron 35.0%
! CAAAGATGATCGAGTTGTAA+GGG - chr6_4:9720735-9720754 Msa0975940:intron 35.0%
TTGTCATCAACATTGTCTCT+TGG + chr6_4:9720859-9720878 None:intergenic 35.0%
!! AGAGACAATGTTGATGACAA+TGG - chr6_4:9720859-9720878 Msa0975940:intron 35.0%
AGTCAATGACGTTGAAAATG+AGG - chr6_4:9720954-9720973 Msa0975940:CDS 35.0%
TGGCTACTCTCCTATTTAAA+AGG + chr6_4:9721127-9721146 None:intergenic 35.0%
!! CAGTACATTTAATTTGCCAG+AGG + chr6_4:9721246-9721265 None:intergenic 35.0%
! ATAGGTCGTGATTTTCTCTG+CGG + chr6_4:9713264-9713283 None:intergenic 40.0%
CAGAGAAAATCACGACCTAT+CGG - chr6_4:9713264-9713283 Msa0975940:three_prime_UTR 40.0%
GTATCAGTCAAAGAACCCAA+CGG + chr6_4:9713393-9713412 None:intergenic 40.0%
TTGGGTTCTTTGACTGATAC+CGG - chr6_4:9713393-9713412 Msa0975940:exon 40.0%
GTTATGCTGAAGATTGGAAG+AGG - chr6_4:9713439-9713458 Msa0975940:CDS 40.0%
TGGAAGAGGTTTAGAGAAGT+TGG - chr6_4:9713453-9713472 Msa0975940:CDS 40.0%
TTGATGAAGCGGTAATGAAG+AGG - chr6_4:9713481-9713500 Msa0975940:CDS 40.0%
GAAAGATGATGAAGCGATGT+TGG - chr6_4:9713503-9713522 Msa0975940:CDS 40.0%
GGTTCAAAAACCAACTCATC+CGG + chr6_4:9713708-9713727 None:intergenic 40.0%
!!! GGATGAGTTGGTTTTTGAAC+CGG - chr6_4:9713707-9713726 Msa0975940:intron 40.0%
GTATGTAGCAGAGTCGAATA+CGG - chr6_4:9713840-9713859 Msa0975940:CDS 40.0%
GACCTATAAGTAGAGAGAGA+TGG - chr6_4:9714122-9714141 Msa0975940:intron 40.0%
GTAGAGAGAGATGGTATGAA+AGG - chr6_4:9714131-9714150 Msa0975940:intron 40.0%
GGATAATCGAGAGAACTCTT+TGG - chr6_4:9714360-9714379 Msa0975940:intron 40.0%
!! GTTGATCATAGGCTTTGAAC+TGG - chr6_4:9714867-9714886 Msa0975940:intron 40.0%
! TATCGATCCTGATGATGTCA+AGG + chr6_4:9715163-9715182 None:intergenic 40.0%
TTTGGAGGATACCGTACAAA+GGG - chr6_4:9715262-9715281 Msa0975940:intron 40.0%
!! CGTACAAAGGGCATTATACT+TGG - chr6_4:9715274-9715293 Msa0975940:intron 40.0%
CCAATTAATGGCAGTTTCCT+AGG + chr6_4:9715495-9715514 None:intergenic 40.0%
CCTAGGAAACTGCCATTAAT+TGG - chr6_4:9715492-9715511 Msa0975940:CDS 40.0%
AAAGGGAAGATTTGAAGGAG+TGG - chr6_4:9716192-9716211 Msa0975940:CDS 40.0%
AAGGGAAGATTTGAAGGAGT+GGG - chr6_4:9716193-9716212 Msa0975940:CDS 40.0%
AGAGAGGATATGCTAAGTGA+TGG - chr6_4:9716233-9716252 Msa0975940:CDS 40.0%
AGGATATGCTAAGTGATGGT+AGG - chr6_4:9716237-9716256 Msa0975940:CDS 40.0%
AGTGATGGTAGGCAAAATCT+TGG - chr6_4:9716248-9716267 Msa0975940:CDS 40.0%
! AGAGAGAGATCTAGAAGTGT+TGG - chr6_4:9716319-9716338 Msa0975940:CDS 40.0%
AGATGTAGATGCAGAAGAGA+AGG - chr6_4:9716409-9716428 Msa0975940:CDS 40.0%
AAAGTGTGAGTACATGCACT+TGG - chr6_4:9716615-9716634 Msa0975940:CDS 40.0%
! CCATAACAATGGACTTGGAT+TGG + chr6_4:9716677-9716696 None:intergenic 40.0%
CCAATCCAAGTCCATTGTTA+TGG - chr6_4:9716674-9716693 Msa0975940:CDS 40.0%
! CCAAACCATAACAATGGACT+TGG + chr6_4:9716682-9716701 None:intergenic 40.0%
CCAAGTCCATTGTTATGGTT+TGG - chr6_4:9716679-9716698 Msa0975940:CDS 40.0%
!! GGGGTGTTAATGAGTTGATT+TGG + chr6_4:9716779-9716798 None:intergenic 40.0%
TTCGATTTCCCTATACTCCA+AGG + chr6_4:9717186-9717205 None:intergenic 40.0%
GGAAATCGAAGTCAACCATA+GGG - chr6_4:9717196-9717215 Msa0975940:CDS 40.0%
! TTGCTCTTCTTTTCCAACCT+TGG + chr6_4:9717225-9717244 None:intergenic 40.0%
GCTTCAAATTCTCAGTCTCT+TGG + chr6_4:9717466-9717485 None:intergenic 40.0%
TGAAGCTTACTCAAGATGAG+AGG - chr6_4:9717480-9717499 Msa0975940:intron 40.0%
! AGAGCATTCTCGTTTGCAAT+TGG - chr6_4:9717505-9717524 Msa0975940:intron 40.0%
TGAAGGAAGCTGAAAACTTG+AGG - chr6_4:9717576-9717595 Msa0975940:intron 40.0%
GAAGGAAGCTGAAAACTTGA+GGG - chr6_4:9717577-9717596 Msa0975940:intron 40.0%
GGCTTAGGTTTGAGAAAGAA+TGG - chr6_4:9717606-9717625 Msa0975940:intron 40.0%
TGAGAAAGAATGGGAAGAAC+TGG - chr6_4:9717616-9717635 Msa0975940:intron 40.0%
TGACATTAGTGCAGAACAAC+AGG - chr6_4:9717652-9717671 Msa0975940:intron 40.0%
AGAACAACAGGAAGTTGAGA+AGG - chr6_4:9717664-9717683 Msa0975940:intron 40.0%
GGAGCTTGAAAAGCTTGAAT+TGG - chr6_4:9717772-9717791 Msa0975940:intron 40.0%
TCAGAAAAGGAAAGAGGAGA+TGG - chr6_4:9717919-9717938 Msa0975940:intron 40.0%
! ATTTTCTCTCTCTTTCCTGC+AGG + chr6_4:9717952-9717971 None:intergenic 40.0%
GAGAAAATTTCAGGAGGAGA+TGG - chr6_4:9717964-9717983 Msa0975940:intron 40.0%
CTTGAAAGATGCTGCTGAAA+AGG - chr6_4:9718012-9718031 Msa0975940:intron 40.0%
AAGATGCTGCTGAAAAGGAA+TGG - chr6_4:9718017-9718036 Msa0975940:intron 40.0%
AGATGCTGCTGAAAAGGAAT+GGG - chr6_4:9718018-9718037 Msa0975940:intron 40.0%
AGGGGATCAGATTAGAGAAT+GGG - chr6_4:9718056-9718075 Msa0975940:CDS 40.0%
AATCTTCATGCATCTCACGT+TGG + chr6_4:9718123-9718142 None:intergenic 40.0%
AATGGTTTCTTTCAGCCACA+AGG + chr6_4:9718195-9718214 None:intergenic 40.0%
TCTCAACAAGTGCGAGAAAA+TGG + chr6_4:9718213-9718232 None:intergenic 40.0%
TTACCTGACAGTAAAGAGTG+TGG - chr6_4:9718295-9718314 Msa0975940:intron 40.0%
! TACCTGACAGTAAAGAGTGT+GGG - chr6_4:9718296-9718315 Msa0975940:intron 40.0%
ATCTCCTCTTGAGAACTCAA+AGG - chr6_4:9718336-9718355 Msa0975940:intron 40.0%
! TTGTCCTTTGAGTTCTCAAG+AGG + chr6_4:9718343-9718362 None:intergenic 40.0%
AAGGACAATGTTATCGCTTC+TGG - chr6_4:9718355-9718374 Msa0975940:intron 40.0%
AAATCTTGGACGTGCATTTG+CGG + chr6_4:9718420-9718439 None:intergenic 40.0%
CAAGAACGACAAATAGCAGA+TGG - chr6_4:9718586-9718605 Msa0975940:intron 40.0%
ATATTCAGTATTCCCCTCTC+TGG + chr6_4:9718662-9718681 None:intergenic 40.0%
CATGTAGCTGTGTTCATCTA+TGG + chr6_4:9718692-9718711 None:intergenic 40.0%
CATAGATGAACACAGCTACA+TGG - chr6_4:9718690-9718709 Msa0975940:intron 40.0%
AGCTACATGGAAAGTTTGAC+AGG - chr6_4:9718703-9718722 Msa0975940:intron 40.0%
GCTACATGGAAAGTTTGACA+GGG - chr6_4:9718704-9718723 Msa0975940:intron 40.0%
CTACATGGAAAGTTTGACAG+GGG - chr6_4:9718705-9718724 Msa0975940:intron 40.0%
TACATGGAAAGTTTGACAGG+GGG - chr6_4:9718706-9718725 Msa0975940:intron 40.0%
ACTGACTGTTGAGAATCATC+TGG + chr6_4:9718736-9718755 None:intergenic 40.0%
! CGTTTTTCCTAGGAACTCAT+TGG + chr6_4:9718845-9718864 None:intergenic 40.0%
AAGCTACTGGTAACAGTACA+AGG - chr6_4:9718932-9718951 Msa0975940:intron 40.0%
AGACGTAAGTTTAGTCTCAG+GGG - chr6_4:9719124-9719143 Msa0975940:intron 40.0%
!! AAGCTTTATTGCCCCAAACA+AGG + chr6_4:9719150-9719169 None:intergenic 40.0%
CTGCGGAGAAAATATGGTTA+GGG + chr6_4:9719686-9719705 None:intergenic 40.0%
TCTGCGGAGAAAATATGGTT+AGG + chr6_4:9719687-9719706 None:intergenic 40.0%
AATCCAAACATACCCGCATT+AGG - chr6_4:9719879-9719898 Msa0975940:CDS 40.0%
AATACGACAACACCTAATGC+GGG + chr6_4:9719894-9719913 None:intergenic 40.0%
ACTAGATAACCAGGATTGAG+GGG + chr6_4:9720068-9720087 None:intergenic 40.0%
!! AAGTGCATTTGGCTTTACTG+TGG - chr6_4:9720157-9720176 Msa0975940:intron 40.0%
ACTGTGTGTAATAGGAGGAA+TGG - chr6_4:9720211-9720230 Msa0975940:intron 40.0%
TTTAATGCAGGAGGATGTCA+AGG - chr6_4:9720256-9720275 Msa0975940:intron 40.0%
TTAATGCAGGAGGATGTCAA+GGG - chr6_4:9720257-9720276 Msa0975940:intron 40.0%
TTAGCACCATGCATCATTGT+CGG - chr6_4:9720331-9720350 Msa0975940:intron 40.0%
! CGTTGGATAACTCCTGTTTT+AGG + chr6_4:9720437-9720456 None:intergenic 40.0%
ATTCTATCAAACGGCATCGT+TGG + chr6_4:9720454-9720473 None:intergenic 40.0%
! AAGCCTTATCCTACTAAGTG+GGG + chr6_4:9720499-9720518 None:intergenic 40.0%
! CAAGCCTTATCCTACTAAGT+GGG + chr6_4:9720500-9720519 None:intergenic 40.0%
GGAGTTATCCAACGAAACAA+AGG - chr6_4:9720582-9720601 Msa0975940:intron 40.0%
! TTCAAGAGCCTTTGTTTCGT+TGG + chr6_4:9720593-9720612 None:intergenic 40.0%
GCTCTTGAAAAAGAAGCTTC+TGG - chr6_4:9720604-9720623 Msa0975940:intron 40.0%
CTTGAAAAAGAAGCTTCTGG+TGG - chr6_4:9720607-9720626 Msa0975940:intron 40.0%
TAAAAACCCTGAAGTAGCAG+TGG - chr6_4:9720648-9720667 Msa0975940:intron 40.0%
GTGTAGCACTTTCTTCAATG+CGG + chr6_4:9720906-9720925 None:intergenic 40.0%
!! CATTGAAGAAAGTGCTACAC+TGG - chr6_4:9720906-9720925 Msa0975940:intron 40.0%
!! CACTCGATTTAGGGTTTTGC+CGG + chr6_4:9713178-9713197 None:intergenic 45.0%
! AACAGCTTTTCCCTTTGCGA+GGG + chr6_4:9713340-9713359 None:intergenic 45.0%
AGTTGGACTGCTTGATGAAG+CGG - chr6_4:9713470-9713489 Msa0975940:CDS 45.0%
GTTGGAGAAGATTTCGAGAC+TGG - chr6_4:9713521-9713540 Msa0975940:CDS 45.0%
GATTTCGAGACTGGAGAAAG+AGG - chr6_4:9713530-9713549 Msa0975940:CDS 45.0%
TGGTATGAAAGGAGTGAGCT+AGG - chr6_4:9714142-9714161 Msa0975940:intron 45.0%
GGTATGAAAGGAGTGAGCTA+GGG - chr6_4:9714143-9714162 Msa0975940:intron 45.0%
AAAGGAGTGAGCTAGGGAAT+TGG - chr6_4:9714149-9714168 Msa0975940:intron 45.0%
AAGGAGTGAGCTAGGGAATT+GGG - chr6_4:9714150-9714169 Msa0975940:intron 45.0%
AAATAACCCAGGCCCACAAA+AGG + chr6_4:9714189-9714208 None:intergenic 45.0%
AGTGGAGTTCCAAGTTCGAT+CGG - chr6_4:9714586-9714605 Msa0975940:intron 45.0%
GCAAGAACTAGCTGAAACTC+AGG - chr6_4:9714614-9714633 Msa0975940:intron 45.0%
AGAACTAGCTGAAACTCAGG+AGG - chr6_4:9714617-9714636 Msa0975940:intron 45.0%
! GTCTGAAGTCCAAAAACGAG+AGG - chr6_4:9714677-9714696 Msa0975940:intron 45.0%
CATCGTATATGCTGGAAGTC+TGG - chr6_4:9715116-9715135 Msa0975940:intron 45.0%
GTTTGGAGGATACCGTACAA+AGG - chr6_4:9715261-9715280 Msa0975940:intron 45.0%
ATGGGAAGAAGACTGGACTT+CGG + chr6_4:9715743-9715762 None:intergenic 45.0%
GGTGGATGGAATTGAAGAGA+AGG - chr6_4:9715889-9715908 Msa0975940:CDS 45.0%
AGATATGAAGTTGCGAGAGC+TGG - chr6_4:9715985-9716004 Msa0975940:CDS 45.0%
TTGTCAGTAGCTACCGAGTA+TGG - chr6_4:9716040-9716059 Msa0975940:CDS 45.0%
AAGATTTGAAGGAGTGGGAG+AGG - chr6_4:9716198-9716217 Msa0975940:CDS 45.0%
GGATTCTGCAAAGAAAACGC+TGG - chr6_4:9716541-9716560 Msa0975940:CDS 45.0%
GCATGTACTCACACTTTCTC+TGG + chr6_4:9716612-9716631 None:intergenic 45.0%
GCAGCAGTTTGAGCTTGAAA+TGG - chr6_4:9717112-9717131 Msa0975940:CDS 45.0%
GGGAAATCGAAGTCAACCAT+AGG - chr6_4:9717195-9717214 Msa0975940:CDS 45.0%
AGTCAACCATAGGGAAACCA+AGG - chr6_4:9717205-9717224 Msa0975940:CDS 45.0%
AACCATAGGGAAACCAAGGT+TGG - chr6_4:9717209-9717228 Msa0975940:CDS 45.0%
TTCCAACCTTGGTTTCCCTA+TGG + chr6_4:9717214-9717233 None:intergenic 45.0%
AAAAGAGAGAGAGCTGGAGA+AGG - chr6_4:9717340-9717359 Msa0975940:CDS 45.0%
! GCTTGCTGATCGAAAGAGTT+TGG - chr6_4:9717376-9717395 Msa0975940:CDS 45.0%
CTGAAAACTTGAGGGATGAG+AGG - chr6_4:9717585-9717604 Msa0975940:intron 45.0%
ACAGGAAGTTGAGAAGGAGA+AGG - chr6_4:9717670-9717689 Msa0975940:intron 45.0%
ATGGGAAGAAGTCAAGTCTG+AGG - chr6_4:9718036-9718055 Msa0975940:intron 45.0%
TGGGAAGAAGTCAAGTCTGA+GGG - chr6_4:9718037-9718056 Msa0975940:intron 45.0%
GAGGGGATCAGATTAGAGAA+TGG - chr6_4:9718055-9718074 Msa0975940:CDS 45.0%
TGAGAAGCTCAGGAATTGCA+AGG - chr6_4:9718228-9718247 Msa0975940:CDS 45.0%
TCAGGAATTGCAAGGACTGT+GGG - chr6_4:9718236-9718255 Msa0975940:CDS 45.0%
! ACCTGACAGTAAAGAGTGTG+GGG - chr6_4:9718297-9718316 Msa0975940:intron 45.0%
TCAAGAGGAGATGTAGGCAA+GGG + chr6_4:9718328-9718347 None:intergenic 45.0%
GAGTTCTCAAGAGGAGATGT+AGG + chr6_4:9718334-9718353 None:intergenic 45.0%
CAGGCCATTTAGATCCAGAA+TGG + chr6_4:9718387-9718406 None:intergenic 45.0%
ACGACAAATAGCAGATGGAG+TGG - chr6_4:9718591-9718610 Msa0975940:intron 45.0%
! TGGCAATGTTATCGGATTGG+AGG + chr6_4:9718642-9718661 None:intergenic 45.0%
CTCTGGCAATGTTATCGGAT+TGG + chr6_4:9718645-9718664 None:intergenic 45.0%
ATCCGATAACATTGCCAGAG+AGG - chr6_4:9718645-9718664 Msa0975940:intron 45.0%
TCCGATAACATTGCCAGAGA+GGG - chr6_4:9718646-9718665 Msa0975940:intron 45.0%
TTCTCAACAGTCAGTCCCAA+AGG - chr6_4:9718741-9718760 Msa0975940:intron 45.0%
GTCTTTGTCGACCAACCTTT+GGG + chr6_4:9718759-9718778 None:intergenic 45.0%
AGTAGCTTTCTCAGTGTGAC+TGG + chr6_4:9718920-9718939 None:intergenic 45.0%
AGTCACACTGAGAAAGCTAC+TGG - chr6_4:9718919-9718938 Msa0975940:intron 45.0%
! CAGAATGCTGCTGATAGTGA+AGG - chr6_4:9718997-9719016 Msa0975940:intron 45.0%
CATTCAGACAGTACAACAGC+TGG - chr6_4:9719021-9719040 Msa0975940:intron 45.0%
! TTCTCCCCTGTAACTTGTGT+GGG + chr6_4:9719081-9719100 None:intergenic 45.0%
TATCGTATCAGTGTACACGC+TGG - chr6_4:9719183-9719202 Msa0975940:intron 45.0%
TCTTATTGGGAAGAGGGGAA+CGG + chr6_4:9719371-9719390 None:intergenic 45.0%
GGTGCAATCAATGAGACGAT+TGG + chr6_4:9719416-9719435 None:intergenic 45.0%
TAGAAACTGAAAGGGGGCAA+CGG + chr6_4:9719446-9719465 None:intergenic 45.0%
TGAGGTGTGGATGTAGTTCT+AGG - chr6_4:9719617-9719636 Msa0975940:intron 45.0%
ACACCTAATGCGGGTATGTT+TGG + chr6_4:9719885-9719904 None:intergenic 45.0%
!! TGCATTTGGCTTTACTGTGG+TGG - chr6_4:9720160-9720179 Msa0975940:intron 45.0%
TGACCCCACTTAGTAGGATA+AGG - chr6_4:9720493-9720512 Msa0975940:intron 45.0%
! CCAAGCCTTATCCTACTAAG+TGG + chr6_4:9720501-9720520 None:intergenic 45.0%
CCACTTAGTAGGATAAGGCT+TGG - chr6_4:9720498-9720517 Msa0975940:intron 45.0%
TGTCTTTCTTTGAGCAGTGC+AGG - chr6_4:9720541-9720560 Msa0975940:intron 45.0%
AGGCACAGTTTCATCAACAC+AGG - chr6_4:9720561-9720580 Msa0975940:intron 45.0%
AGAAGCTTCTGGTGGTAAAC+AGG - chr6_4:9720615-9720634 Msa0975940:intron 45.0%
GATCTCAACCGTAAAGTCTG+TGG - chr6_4:9720708-9720727 Msa0975940:intron 45.0%
!! GAAAGTGCTACACTGGAGTA+TGG - chr6_4:9720913-9720932 Msa0975940:intron 45.0%
CTGGAGTATGGAGATGAAGA+TGG - chr6_4:9720925-9720944 Msa0975940:CDS 45.0%
TGACGTTGAAAATGAGGACG+AGG - chr6_4:9720960-9720979 Msa0975940:CDS 45.0%
GACGTTGAAAATGAGGACGA+GGG - chr6_4:9720961-9720980 Msa0975940:CDS 45.0%
ACGTTGAAAATGAGGACGAG+GGG - chr6_4:9720962-9720981 Msa0975940:CDS 45.0%
AGATGAAGAGGAAGACGAAG+AGG - chr6_4:9720987-9721006 Msa0975940:CDS 45.0%
TTGCCAGAGGACAGTCATAA+CGG + chr6_4:9721233-9721252 None:intergenic 45.0%
AATGTACTGCTTAGGCACAG+AGG - chr6_4:9721257-9721276 Msa0975940:five_prime_UTR 45.0%
!! TAGAATAAAATTATATTATT+TGG + chr6_4:9716743-9716762 None:intergenic 5.0%
GTGATTGAACGGAGTTTCGC+CGG + chr6_4:9713225-9713244 None:intergenic 50.0%
GCGAAACTCCGTTCAATCAC+CGG - chr6_4:9713225-9713244 Msa0975940:three_prime_UTR 50.0%
! ACATTGCGCCGGTGATTGAA+CGG + chr6_4:9713236-9713255 None:intergenic 50.0%
ATCACGACCTATCGGTACAC+CGG - chr6_4:9713272-9713291 Msa0975940:three_prime_UTR 50.0%
! AATGATGCCGGTGTACCGAT+AGG + chr6_4:9713282-9713301 None:intergenic 50.0%
TCATTCACACCGCGTCGAAT+TGG - chr6_4:9713297-9713316 Msa0975940:three_prime_UTR 50.0%
ACCTAAATCTGCCCTCGCAA+AGG - chr6_4:9713326-9713345 Msa0975940:three_prime_UTR 50.0%
CCTAAATCTGCCCTCGCAAA+GGG - chr6_4:9713327-9713346 Msa0975940:three_prime_UTR 50.0%
! CAACAGCTTTTCCCTTTGCG+AGG + chr6_4:9713341-9713360 None:intergenic 50.0%
TCAGTCAAAGAACCCAACGG+CGG + chr6_4:9713390-9713409 None:intergenic 50.0%
TGATACCGGCGATGATGTTG+TGG - chr6_4:9713407-9713426 Msa0975940:CDS 50.0%
! GAATTGGTCTCCGGATGAGT+TGG - chr6_4:9713695-9713714 Msa0975940:intron 50.0%
CGGAACTAGGAAACGTACAC+AGG - chr6_4:9714100-9714119 Msa0975940:intron 50.0%
AGGAGTGAGCTAGGGAATTG+GGG - chr6_4:9714151-9714170 Msa0975940:intron 50.0%
! GGAGAGACCATGCCTTTTGT+GGG - chr6_4:9714174-9714193 Msa0975940:intron 50.0%
! AGAGTACCACTCAGCTCCTT+TGG - chr6_4:9714995-9715014 Msa0975940:intron 50.0%
GAGTACCACTCAGCTCCTTT+GGG - chr6_4:9714996-9715015 Msa0975940:intron 50.0%
CAAAACCCAAAGGAGCTGAG+TGG + chr6_4:9715004-9715023 None:intergenic 50.0%
AACTGCATGATGCAGAAGCC+AGG - chr6_4:9715930-9715949 Msa0975940:CDS 50.0%
TATGAAGTTGCGAGAGCTGG+AGG - chr6_4:9715988-9716007 Msa0975940:CDS 50.0%
!! ACCTCAAAGGTACTAGGCAG+GGG + chr6_4:9716798-9716817 None:intergenic 50.0%
!! GACCTCAAAGGTACTAGGCA+GGG + chr6_4:9716799-9716818 None:intergenic 50.0%
!! TGACCTCAAAGGTACTAGGC+AGG + chr6_4:9716800-9716819 None:intergenic 50.0%
AAAGCGGAAATCTCTCGCTG+AGG - chr6_4:9717139-9717158 Msa0975940:CDS 50.0%
TGAGGAGTTTAGCAGCAAGG+AGG - chr6_4:9717157-9717176 Msa0975940:CDS 50.0%
GAGAGAGCTGGAGAAGGAAA+AGG - chr6_4:9717346-9717365 Msa0975940:CDS 50.0%
ACTTGAGGGATGAGAGGCTT+AGG - chr6_4:9717591-9717610 Msa0975940:intron 50.0%
GGGAAGAAGTCAAGTCTGAG+GGG - chr6_4:9718038-9718057 Msa0975940:intron 50.0%
GAAAGAACGTGAACGCCTTG+TGG - chr6_4:9718177-9718196 Msa0975940:CDS 50.0%
! TCGCACTTGTTGAGAAGCTC+AGG - chr6_4:9718218-9718237 Msa0975940:CDS 50.0%
CTCAGGAATTGCAAGGACTG+TGG - chr6_4:9718235-9718254 Msa0975940:CDS 50.0%
CAGGAATTGCAAGGACTGTG+GGG - chr6_4:9718237-9718256 Msa0975940:CDS 50.0%
ACCCCACACTCTTTACTGTC+AGG + chr6_4:9718301-9718320 None:intergenic 50.0%
CTCAAGAGGAGATGTAGGCA+AGG + chr6_4:9718329-9718348 None:intergenic 50.0%
!! GCTTCTGGCTCAAACCATTC+TGG - chr6_4:9718370-9718389 Msa0975940:intron 50.0%
CATTTGCGGAACACAGACAC+AGG + chr6_4:9718406-9718425 None:intergenic 50.0%
CCCCTCTCTGGCAATGTTAT+CGG + chr6_4:9718650-9718669 None:intergenic 50.0%
CCGATAACATTGCCAGAGAG+GGG - chr6_4:9718647-9718666 Msa0975940:intron 50.0%
ATGGAAAGTTTGACAGGGGG+AGG - chr6_4:9718709-9718728 Msa0975940:intron 50.0%
CAACAGTCAGTCCCAAAGGT+TGG - chr6_4:9718745-9718764 Msa0975940:intron 50.0%
GGTCTTTGTCGACCAACCTT+TGG + chr6_4:9718760-9718779 None:intergenic 50.0%
! AAGGTTGGTCGACAAAGACC+TGG - chr6_4:9718760-9718779 Msa0975940:intron 50.0%
! AGGTTGGTCGACAAAGACCT+GGG - chr6_4:9718761-9718780 Msa0975940:intron 50.0%
!! CCAGATTTGCTTTTCCTCCC+AGG + chr6_4:9718781-9718800 None:intergenic 50.0%
CCTGGGAGGAAAAGCAAATC+TGG - chr6_4:9718778-9718797 Msa0975940:intron 50.0%
TGCTAGAACACGCTCAGTGA+AGG - chr6_4:9718804-9718823 Msa0975940:intron 50.0%
CTCAGTGAAGGCTGTGGTTA+AGG - chr6_4:9718816-9718835 Msa0975940:intron 50.0%
AGTGAAGGCTGTGGTTAAGG+AGG - chr6_4:9718819-9718838 Msa0975940:intron 50.0%
AAGGAGGCCAATGAGTTCCT+AGG - chr6_4:9718835-9718854 Msa0975940:intron 50.0%
TCAGACAGTACAACAGCTGG+TGG - chr6_4:9719024-9719043 Msa0975940:intron 50.0%
CAGACAGTACAACAGCTGGT+GGG - chr6_4:9719025-9719044 Msa0975940:intron 50.0%
CTCCACCCACACAAGTTACA+GGG - chr6_4:9719073-9719092 Msa0975940:intron 50.0%
TCCACCCACACAAGTTACAG+GGG - chr6_4:9719074-9719093 Msa0975940:intron 50.0%
! CTTCTCCCCTGTAACTTGTG+TGG + chr6_4:9719082-9719101 None:intergenic 50.0%
!! AGAAGCGTTACAACCTCAGG+CGG - chr6_4:9719097-9719116 Msa0975940:intron 50.0%
!! TTAGTCTCAGGGGCCTTGTT+TGG - chr6_4:9719134-9719153 Msa0975940:intron 50.0%
!! TAGTCTCAGGGGCCTTGTTT+GGG - chr6_4:9719135-9719154 Msa0975940:intron 50.0%
CTTATTGGGAAGAGGGGAAC+GGG + chr6_4:9719370-9719389 None:intergenic 50.0%
AGAAACTGAAAGGGGGCAAC+GGG + chr6_4:9719445-9719464 None:intergenic 50.0%
TAATTGCAGCCCCTCAATCC+TGG - chr6_4:9720056-9720075 Msa0975940:intron 50.0%
CCACAACCGACAATGATGCA+TGG + chr6_4:9720340-9720359 None:intergenic 50.0%
! CCATGCATCATTGTCGGTTG+TGG - chr6_4:9720337-9720356 Msa0975940:intron 50.0%
! CATCATTGTCGGTTGTGGTC+TGG - chr6_4:9720342-9720361 Msa0975940:intron 50.0%
! GACTGTGGACTGCCTAAAAC+AGG - chr6_4:9720422-9720441 Msa0975940:intron 50.0%
TACTAAGTGGGGTCAGCTCA+AGG + chr6_4:9720488-9720507 None:intergenic 50.0%
TTGAGCTGACCCCACTTAGT+AGG - chr6_4:9720487-9720506 Msa0975940:intron 50.0%
AGCTTCTGGTGGTAAACAGG+AGG - chr6_4:9720618-9720637 Msa0975940:intron 50.0%
! CAGCTACCACTGCTACTTCA+GGG + chr6_4:9720657-9720676 None:intergenic 50.0%
! TCAGCTACCACTGCTACTTC+AGG + chr6_4:9720658-9720677 None:intergenic 50.0%
TCTGCACTAGAGTCGTGGTT+TGG + chr6_4:9720690-9720709 None:intergenic 50.0%
TGAGATCTGCACTAGAGTCG+TGG + chr6_4:9720695-9720714 None:intergenic 50.0%
!! TGGTGCTACAACCAACTCTG+TGG - chr6_4:9720879-9720898 Msa0975940:intron 50.0%
TTCAATGCGGTCCACAGAGT+TGG + chr6_4:9720893-9720912 None:intergenic 50.0%
CGTTGAAAATGAGGACGAGG+GGG - chr6_4:9720963-9720982 Msa0975940:CDS 50.0%
TGAAGAGGAAGACGAAGAGG+AGG - chr6_4:9720990-9721009 Msa0975940:CDS 50.0%
TGTCCGTTATGACTGTCCTC+TGG - chr6_4:9721227-9721246 Msa0975940:five_prime_UTR 50.0%
TGCGAGGGCAGATTTAGGTG+TGG + chr6_4:9713325-9713344 None:intergenic 55.0%
CCCTTTGCGAGGGCAGATTT+AGG + chr6_4:9713330-9713349 None:intergenic 55.0%
TACCGGCGATGATGTTGTGG+TGG - chr6_4:9713410-9713429 Msa0975940:CDS 55.0%
AGCCACCACAACATCATCGC+CGG + chr6_4:9713415-9713434 None:intergenic 55.0%
GGAGTGAGCTAGGGAATTGG+GGG - chr6_4:9714152-9714171 Msa0975940:intron 55.0%
GAGTGAGCTAGGGAATTGGG+GGG - chr6_4:9714153-9714172 Msa0975940:intron 55.0%
! GGGAGAGACCATGCCTTTTG+TGG - chr6_4:9714173-9714192 Msa0975940:intron 55.0%
! ACCATGCCTTTTGTGGGCCT+GGG - chr6_4:9714180-9714199 Msa0975940:intron 55.0%
GTTCCAAGTTCGATCGGCTG+AGG - chr6_4:9714592-9714611 Msa0975940:intron 55.0%
TTGCCTCAGCCGATCGAACT+TGG + chr6_4:9714598-9714617 None:intergenic 55.0%
CCTGTTTACCTCAGCAAGCC+TGG + chr6_4:9715951-9715970 None:intergenic 55.0%
!! CCAGGCTTGCTGAGGTAAAC+AGG - chr6_4:9715948-9715967 Msa0975940:CDS 55.0%
AGGAGTGGGAGAGGAAGCTA+CGG - chr6_4:9716207-9716226 Msa0975940:CDS 55.0%
GAGGAAGCTACGGCAAAGAG+AGG - chr6_4:9716217-9716236 Msa0975940:CDS 55.0%
ACCCCTGCCTAGTACCTTTG+AGG - chr6_4:9716794-9716813 Msa0975940:CDS 55.0%
CGCTGAGGAGTTTAGCAGCA+AGG - chr6_4:9717154-9717173 Msa0975940:CDS 55.0%
GGAGTTTAGCAGCAAGGAGG+AGG - chr6_4:9717160-9717179 Msa0975940:CDS 55.0%
AGGAGGAGGCCTTGGAGTAT+AGG - chr6_4:9717174-9717193 Msa0975940:CDS 55.0%
GGAGGAGGCCTTGGAGTATA+GGG - chr6_4:9717175-9717194 Msa0975940:CDS 55.0%
GGAGATGGAGAAAGACCTGC+AGG - chr6_4:9717934-9717953 Msa0975940:intron 55.0%
AGGACTGTGGGGAAGTTGTC+AGG - chr6_4:9718248-9718267 Msa0975940:CDS 55.0%
GGACTGTGGGGAAGTTGTCA+GGG - chr6_4:9718249-9718268 Msa0975940:CDS 55.0%
TTGGTCGACAAAGACCTGGG+AGG - chr6_4:9718764-9718783 Msa0975940:intron 55.0%
AACACGCTCAGTGAAGGCTG+TGG - chr6_4:9718810-9718829 Msa0975940:intron 55.0%
! CTGGTGGGCGCAAGAAGAAA+AGG - chr6_4:9719040-9719059 Msa0975940:intron 55.0%
GCTCCACCCACACAAGTTAC+AGG - chr6_4:9719072-9719091 Msa0975940:intron 55.0%
! TCCCCTGTAACTTGTGTGGG+TGG + chr6_4:9719078-9719097 None:intergenic 55.0%
!! GGGAGAAGCGTTACAACCTC+AGG - chr6_4:9719094-9719113 Msa0975940:intron 55.0%
CTTACGTCTTATGCCGCCTG+AGG + chr6_4:9719113-9719132 None:intergenic 55.0%
!! AGTCTCAGGGGCCTTGTTTG+GGG - chr6_4:9719136-9719155 Msa0975940:intron 55.0%
AAAGGGGGCAACGGGACAAT+TGG + chr6_4:9719437-9719456 None:intergenic 55.0%
AGTGGGGTCAGCTCAAGGAA+AGG + chr6_4:9720483-9720502 None:intergenic 55.0%
TCTGGTGGTAAACAGGAGGC+AGG - chr6_4:9720622-9720641 Msa0975940:intron 55.0%
AGAGGAAGACGAAGAGGAGG+AGG - chr6_4:9720993-9721012 Msa0975940:CDS 55.0%
TTTCCGATAGACGCCTCACC+GGG + chr6_4:9721024-9721043 None:intergenic 55.0%
CTTTCCGATAGACGCCTCAC+CGG + chr6_4:9721025-9721044 None:intergenic 55.0%
CGACGCGGTGTGAATGATGC+CGG + chr6_4:9713294-9713313 None:intergenic 60.0%
GGTGTGGCACCAATTCGACG+CGG + chr6_4:9713309-9713328 None:intergenic 60.0%
GTCAAAGAACCCAACGGCGG+CGG + chr6_4:9713387-9713406 None:intergenic 60.0%
! GACCATGCCTTTTGTGGGCC+TGG - chr6_4:9714179-9714198 Msa0975940:intron 60.0%
ACCCAGGCCCACAAAAGGCA+TGG + chr6_4:9714184-9714203 None:intergenic 60.0%
!! TGCAGAAGCCAGGCTTGCTG+AGG - chr6_4:9715940-9715959 Msa0975940:CDS 60.0%
TAGCAGCAAGGAGGAGGCCT+TGG - chr6_4:9717166-9717185 Msa0975940:CDS 60.0%
GGACGAGGGGGAAGATGAAG+AGG - chr6_4:9720975-9720994 Msa0975940:CDS 60.0%
GGAAGACGAAGAGGAGGAGG+AGG - chr6_4:9720996-9721015 Msa0975940:CDS 60.0%
GAAGAGGAGGAGGAGGATCC+CGG - chr6_4:9721003-9721022 Msa0975940:CDS 60.0%
! GATCCCGGTGAGGCGTCTAT+CGG - chr6_4:9721018-9721037 Msa0975940:CDS 60.0%
CTGCGGCGTGAACATTGCGC+CGG + chr6_4:9713247-9713266 None:intergenic 65.0%
AAAGAACCCAACGGCGGCGG+CGG + chr6_4:9713384-9713403 None:intergenic 65.0%
CGGCGGCGGAGGAGGTTCAT+CGG + chr6_4:9713370-9713389 None:intergenic 70.0%
GGAGGAGGAGGATCCCGGTG+AGG - chr6_4:9721008-9721027 Msa0975940:CDS 70.0%
! ACCTCCTCCGCCGCCGCCGT+TGG - chr6_4:9713374-9713393 Msa0975940:three_prime_UTR 80.0%
! CCTCCTCCGCCGCCGCCGTT+GGG - chr6_4:9713375-9713394 Msa0975940:three_prime_UTR 80.0%
! GAACCCAACGGCGGCGGCGG+AGG + chr6_4:9713381-9713400 None:intergenic 80.0%
! CCCAACGGCGGCGGCGGAGG+AGG + chr6_4:9713378-9713397 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 9713109 9721363 9713109 ID=Msa0975940;Name=Msa0975940
chr6_4 mRNA 9713109 9721363 9713109 ID=Msa0975940-mRNA-1;Parent=Msa0975940;Name=Msa0975940-mRNA-1;_AED=0.08;_eAED=0.08;_QI=143|0.62|0.55|0.88|0.87|0.88|9|292|1204
chr6_4 exon 9713109 9713625 9713109 ID=Msa0975940-mRNA-1:exon:3581;Parent=Msa0975940-mRNA-1
chr6_4 exon 9713716 9713868 9713716 ID=Msa0975940-mRNA-1:exon:3580;Parent=Msa0975940-mRNA-1
chr6_4 exon 9714259 9714316 9714259 ID=Msa0975940-mRNA-1:exon:3579;Parent=Msa0975940-mRNA-1
chr6_4 exon 9715345 9717413 9715345 ID=Msa0975940-mRNA-1:exon:3578;Parent=Msa0975940-mRNA-1
chr6_4 exon 9717853 9717936 9717853 ID=Msa0975940-mRNA-1:exon:3577;Parent=Msa0975940-mRNA-1
chr6_4 exon 9718042 9718312 9718042 ID=Msa0975940-mRNA-1:exon:3576;Parent=Msa0975940-mRNA-1
chr6_4 exon 9718416 9718599 9718416 ID=Msa0975940-mRNA-1:exon:3575;Parent=Msa0975940-mRNA-1
chr6_4 exon 9719665 9719935 9719665 ID=Msa0975940-mRNA-1:exon:3574;Parent=Msa0975940-mRNA-1
chr6_4 exon 9720921 9721363 9720921 ID=Msa0975940-mRNA-1:exon:3573;Parent=Msa0975940-mRNA-1
chr6_4 five_prime_UTR 9721221 9721363 9721221 ID=Msa0975940-mRNA-1:five_prime_utr;Parent=Msa0975940-mRNA-1
chr6_4 CDS 9720921 9721220 9720921 ID=Msa0975940-mRNA-1:cds;Parent=Msa0975940-mRNA-1
chr6_4 CDS 9719665 9719935 9719665 ID=Msa0975940-mRNA-1:cds;Parent=Msa0975940-mRNA-1
chr6_4 CDS 9718416 9718599 9718416 ID=Msa0975940-mRNA-1:cds;Parent=Msa0975940-mRNA-1
chr6_4 CDS 9718042 9718312 9718042 ID=Msa0975940-mRNA-1:cds;Parent=Msa0975940-mRNA-1
chr6_4 CDS 9717853 9717936 9717853 ID=Msa0975940-mRNA-1:cds;Parent=Msa0975940-mRNA-1
chr6_4 CDS 9715345 9717413 9715345 ID=Msa0975940-mRNA-1:cds;Parent=Msa0975940-mRNA-1
chr6_4 CDS 9714259 9714316 9714259 ID=Msa0975940-mRNA-1:cds;Parent=Msa0975940-mRNA-1
chr6_4 CDS 9713716 9713868 9713716 ID=Msa0975940-mRNA-1:cds;Parent=Msa0975940-mRNA-1
chr6_4 CDS 9713401 9713625 9713401 ID=Msa0975940-mRNA-1:cds;Parent=Msa0975940-mRNA-1
chr6_4 three_prime_UTR 9713109 9713400 9713109 ID=Msa0975940-mRNA-1:three_prime_utr;Parent=Msa0975940-mRNA-1
Gene Sequence

>Msa0975940

ATGTTCACGCCGCAGAGAAAATCACGACCTATCGGTACACCGGCATCATTCACACCGCGTCGAATTGGTGCCACACCTAAATCTGCCCTCGCAAAGGGAAAAGCTGTTGTCATCGCCGATGAACCTCCTCCGCCGCCGCCGTTGGGTTCTTTGACTGATACCGGCGATGATGTTGTGGTGGCTTCTAGTTATGCTGAAGATTGGAAGAGGTTTAGAGAAGTTGGACTGCTTGATGAAGCGGTAATGAAGAGGAAAGATGATGAAGCGATGTTGGAGAAGATTTCGAGACTGGAGAAAGAGCTTTATGATTATCAGTACAACATGGGTCTCCTTCTTATTGAGAAGCAAGAGTGGAGTTCCAAGTTCGATCGGCTGAGGCAAGAACTAGCTGAAACTCAGGAGGTTCTAAAACGAGATCAATCATCGCATTTGATTGCATTGTCTGAAGTCCAAAAACGAGAGGAAAATTTGAGGAAAGCTTTGAGTTTAGAAAAGCAGTGTGGAGCTGATGTATGTTCGTTTTTATTTTATTTTATCAAGTCTATAATTGTGTTGAATTGGTTGTGCTTGCATAAAGCAAATGAATTGGTGGATGGAATTGAAGAGAAGGCTTCAACAGTTAACAAGAAACTGCATGATGCAGAAGCCAGGCTTGCTGAGGTAAACAGGAAAAATACAGAGCTAGATATGAAGTTGCGAGAGCTGGAGGTTCGTGAAAGTTTGCTTCAAAAGGAGCGGTTGTCAGTAGCTACCGATCGAGAATCGTTTGAATCAGTATTCTACAAACAAAGGGAAGATTTGAAGGAGTGGGAGAGGAAGCTACGGCAAAGAGAGGATATGCTAAGTGATGGTAGGCAAAATCTTGGTGAGAAAGAAAAGAATGTGACTGAAACAGAAAAAAAGCTGAAGCAGAAAGAGAGAGATCTAGAAGTGTTGGAGAAGAATATTAACTCATCTAATTCTTTATTAAAAGAAAAGGAAGCTGAGATGAGTAGAAGAGTAGCAGATGTAGATGCAGAAGAGAAGAAAGTGGATTCTGCAAAGAAAACGCTGGATATTAAAGAGAAAGAATTACATGAACTGGAACTAAAGCTTAGTGCCAGAGAAAGTGAAGGGATCCAGAAACTTCTTGATGAGCAAAAACATACTCTGGATTTAAAGTTGCAGCAGTTTGAGCTTGAAATGGAACAAAAGCGGAAATCTCTCGCTGAGGAGTTTAGCAGCAAGGAGGAGGCCTTGGAGTATAGGGAAATCGAAGTCAACCATAGGGAAACCAAGGTTGGAAAAGAAGAGCAAGCTTTGAGTACGAAGTCTGAGAGAATAAAGGAGCAAGATAAGGAACTTTTAACAAAGTTGAAATCATTGAAGGAGGAAGAAAAGACTATGAAAATAAAAGAGAGAGAGCTGGAGAAGGAAAAGGAGAAATTGCTTGCTGATCGAAAGAGTTTGGAGAATTTAAATGCTGAACTTGGGAAGCTTAAAGCTGAGATTTCTCAGCAGAAGCTGCAAATATGCCAAGAGACTGAGAATTTGAAGCTTACTCAAGATGAGAGGTCAGAGCATTCTCGTTTGCAATTGGAACTAAAGCAGGAGATAGAGCATACGAGAACGCAGAAAGATTTAATTATGAAGGAAGCTGAAAACTTGAGGGATGAGAGGCTTAGGTTTGAGAAAGAATGGGAAGAACTGGATAAGAAAAGAGCTGACATTAGTGCAGAACAACAGGAAGTTGAGAAGGAGAAGGAAAAGTTAAGAAAACTGAAGAACAGTGAAGAAGAAAGGTTGAAAAGAGAGAAGCAAGATATGGAAGATAATTTAAAGAAGGAGCTTGAAAAGCTTGAATTGGATAAGAAATCATTTAGTGATTCAATTAAACAAGAGGAATTTCTTTTATCTGAAAAGGTAAAAAATGAAAAGGCACAAATGGTTCAAGATTTTGAATGGAAAACAAGAAATCTTGAGAATGAAATTCAGAAAAGGAAAGAGGAGATGGAGAAAGACCTGCAGGAAAGAGAGAGAAAATTTCAGGAGGAGATGGAAAAAGAGCTTAATAATATTAATATCTTGAAAGATGCTGCTGAAAAGGAATGGGAAGAAGTCAAGTCTGAGGGGATCAGATTAGAGAATGGGAGAAAAGAACTCGAGACAAACAAGCAACAGCTGAAGTCTGACCAACGTGAGATGCATGAAGATTCTGAAATGCTTATGAATCTTAGCCAGAAAGTAAAGAAAGAACGTGAACGCCTTGTGGCTGAAAGAAACCATTTTCTCGCACTTGTTGAGAAGCTCAGGAATTGCAAGGACTGTGGGGAAGTTGTCAGGGACGTTGTTGTGTCTGATCTTCAGTTACCTGACAGTAAAGAGTGTGGGGTTCTTCCCTTGCCTACATCTCCTCTTGAGAACTCAAAGGACAATGTTATCGCTTCTGGCTCAAACCATTCTGGATCTAAATGGCCTGTGTCTGTGTTCCGCAAATGCACGTCCAAGATTTTCAGTTTATCCCCTAGTACTAACACAGATTCTATTGGTACTTCAAATATAGCTGGGACGTCCCCTGAGTCTGATGTAAATGTTAATATAGAAAAAGTAGGAGAGCCTGTGTCATCTCCTAATATAGAAGGACCGATAGTTACTCTTCAAGAACGACAAATAGCAGATGGAGTGGCTTTTCACTCTTCTGATACAGCACACCTCCAATCCGATAACATTGCCAGAGAGGGGAATACTGAATATTCTTTATCCATAGATGAACACAGCTACATGGAAAGTTTGACAGGGGGAGGTCCAGATGATTCTCAACAGTCAGTCCCAAAGGTTGGTCGACAAAGACCTGGGAGGAAAAGCAAATCTGGAATTGCTAGAACACGCTCAGTGAAGGCTGTGGTTAAGGAGGCCAATGAGTTCCTAGGAAAAACGAGTTTGCAAAATCTTGATACTGATCATATCAAAGAAAATAGTCATGAAGAGTCCAGTCACACTGAGAAAGCTACTGGTAACAGTACAAGGAAGCGACAACGTGCACAAACTTCTAAGATTGCTGAAGGTGAGCAGAATGCTGCTGATAGTGAAGGACATTCAGACAGTACAACAGCTGGTGGGCGCAAGAAGAAAAGGTCAACAGTTGCTCCACCCACACAAGTTACAGGGGAGAAGCGTTACAACCTCAGGCGGCATAAGACGAAGTGCATTTGGCTTTACTGTGGTGGATATTTTTCCAATAATACAGAATATCTTACTGCTCTTGAAAAAGAAGCTTCTGGTGGTAAACAGGAGGCAGGTGATAAAAACCCTGAAGTAGCAGTGGTAGCTGATGACAATATCCAAACCACGACTCTAGTGCAGATCTCAACCGTAAAGTCTGTGGAGATCAAAGATGATCGAGTTGTAAGGTTTGAAATACCAAGAGACAATGTTGATGACAATGGTGCTACAACCAACTCTGTGGACCGCATTGAAGAAAGTGCTACACTGGAGTATGGAGATGAAGATGGAAGCATAGTCAATGACGTTGAAAATGAGGACGAGGGGGAAGATGAAGAGGAAGACGAAGAGGAGGAGGAGGATCCCGGTGAGGCGTCTATCGGAAAGAAGATCTTCAAATTTTTCACAACATGA

Protein sequence

>Msa0975940

MFTPQRKSRPIGTPASFTPRRIGATPKSALAKGKAVVIADEPPPPPPLGSLTDTGDDVVVASSYAEDWKRFREVGLLDEAVMKRKDDEAMLEKISRLEKELYDYQYNMGLLLIEKQEWSSKFDRLRQELAETQEVLKRDQSSHLIALSEVQKREENLRKALSLEKQCGADVCSFLFYFIKSIIVLNWLCLHKANELVDGIEEKASTVNKKLHDAEARLAEVNRKNTELDMKLRELEVRESLLQKERLSVATDRESFESVFYKQREDLKEWERKLRQREDMLSDGRQNLGEKEKNVTETEKKLKQKERDLEVLEKNINSSNSLLKEKEAEMSRRVADVDAEEKKVDSAKKTLDIKEKELHELELKLSARESEGIQKLLDEQKHTLDLKLQQFELEMEQKRKSLAEEFSSKEEALEYREIEVNHRETKVGKEEQALSTKSERIKEQDKELLTKLKSLKEEEKTMKIKERELEKEKEKLLADRKSLENLNAELGKLKAEISQQKLQICQETENLKLTQDERSEHSRLQLELKQEIEHTRTQKDLIMKEAENLRDERLRFEKEWEELDKKRADISAEQQEVEKEKEKLRKLKNSEEERLKREKQDMEDNLKKELEKLELDKKSFSDSIKQEEFLLSEKVKNEKAQMVQDFEWKTRNLENEIQKRKEEMEKDLQERERKFQEEMEKELNNINILKDAAEKEWEEVKSEGIRLENGRKELETNKQQLKSDQREMHEDSEMLMNLSQKVKKERERLVAERNHFLALVEKLRNCKDCGEVVRDVVVSDLQLPDSKECGVLPLPTSPLENSKDNVIASGSNHSGSKWPVSVFRKCTSKIFSLSPSTNTDSIGTSNIAGTSPESDVNVNIEKVGEPVSSPNIEGPIVTLQERQIADGVAFHSSDTAHLQSDNIAREGNTEYSLSIDEHSYMESLTGGGPDDSQQSVPKVGRQRPGRKSKSGIARTRSVKAVVKEANEFLGKTSLQNLDTDHIKENSHEESSHTEKATGNSTRKRQRAQTSKIAEGEQNAADSEGHSDSTTAGGRKKKRSTVAPPTQVTGEKRYNLRRHKTKCIWLYCGGYFSNNTEYLTALEKEASGGKQEAGDKNPEVAVVADDNIQTTTLVQISTVKSVEIKDDRVVRFEIPRDNVDDNGATTNSVDRIEESATLEYGDEDGSIVNDVENEDEGEDEEEDEEEEEDPGEASIGKKIFKFFTT*