AlfalfaGEDB | Msa0848750

M. sativa cultivar zhongmu-4 / Msa0848750

KEGG: K10525
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009694 GO:0009695 GO:0009975 GO:0009987 GO:0010817 GO:0016020 GO:0016053 GO:0016853 GO:0016860 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046423 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0072330 GO:1901576
PFAM: PF06351.14

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0848750	XP_003614458.1	96.032	252	10	0	1	252	1	252	5.66e-176	494

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0848750	sp\|Q75KD7\|AOC_ORYSJ	70.048	207	59	2	47	252	36	240	1.04e-106	311

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0848750	Q711Q9	96.032	252	10	0	1	252	1	252	2.71e-176	494

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002680	Msa0848750	0.823596	1.271895e-53	-8.615850e-47
Msa0002710	Msa0848750	0.829287	5.602494e-55	-8.615850e-47
Msa0003400	Msa0848750	0.806082	9.774251e-50	-8.615850e-47
Msa0022750	Msa0848750	-0.822809	1.942453e-53	-8.615850e-47
Msa0041690	Msa0848750	0.813985	1.939311e-51	-8.615850e-47
Msa0050820	Msa0848750	0.801297	9.624966e-49	-8.615850e-47
Msa0057590	Msa0848750	0.829921	3.927761e-55	-8.615850e-47
Msa0103250	Msa0848750	0.803275	3.767602e-49	-8.615850e-47
Msa0106620	Msa0848750	0.800882	1.169942e-48	-8.615850e-47
Msa0115090	Msa0848750	0.800792	1.220318e-48	-8.615850e-47
Msa0628500	Msa0848750	0.804203	2.418402e-49	-8.615850e-47
Msa0704210	Msa0848750	0.996209	1.077306e-224	-8.615850e-47
Msa0716860	Msa0848750	0.800175	1.630424e-48	-8.615850e-47
Msa0716970	Msa0848750	0.806577	7.689969e-50	-8.615850e-47
Msa0717020	Msa0848750	0.807033	6.159983e-50	-8.615850e-47
Msa0724000	Msa0848750	0.807149	5.820005e-50	-8.615850e-47
Msa0744100	Msa0848750	0.806199	9.238184e-50	-8.615850e-47
Msa0751260	Msa0848750	0.828247	9.995589e-55	-8.615850e-47
Msa0757800	Msa0848750	0.816423	5.572698e-52	-8.615850e-47
Msa0795070	Msa0848750	0.840862	6.735069e-58	-8.615850e-47
Msa0814710	Msa0848750	0.916622	1.427628e-85	-8.615850e-47
Msa0143850	Msa0848750	0.802454	5.568189e-49	-8.615850e-47
Msa0164080	Msa0848750	0.809149	2.182869e-50	-8.615850e-47
Msa0168870	Msa0848750	0.806312	8.746650e-50	-8.615850e-47
Msa0173390	Msa0848750	0.811160	8.044354e-51	-8.615850e-47
Msa0181230	Msa0848750	0.801004	1.104737e-48	-8.615850e-47
Msa0187030	Msa0848750	0.851572	8.132858e-61	-8.615850e-47
Msa0190970	Msa0848750	0.802764	4.805482e-49	-8.615850e-47
Msa0205010	Msa0848750	0.802026	6.821006e-49	-8.615850e-47
Msa0225220	Msa0848750	0.806758	7.041049e-50	-8.615850e-47
Msa0389910	Msa0848750	0.805254	1.458662e-49	-8.615850e-47
Msa0397820	Msa0848750	0.809093	2.243307e-50	-8.615850e-47
Msa0430640	Msa0848750	0.800125	1.669051e-48	-8.615850e-47
Msa0473330	Msa0848750	0.811045	8.518325e-51	-8.615850e-47
Msa0243250	Msa0848750	0.803713	3.056576e-49	-8.615850e-47
Msa0342010	Msa0848750	0.818110	2.325477e-52	-8.615850e-47
Msa0506800	Msa0848750	0.803577	3.262552e-49	-8.615850e-47
Msa0506820	Msa0848750	0.817546	3.118038e-52	-8.615850e-47
Msa0506830	Msa0848750	0.803618	3.198172e-49	-8.615850e-47
Msa0559500	Msa0848750	0.809647	1.706000e-50	-8.615850e-47
Msa0579660	Msa0848750	0.825578	4.343591e-54	-8.615850e-47
Msa0848750	Msa0851470	0.800953	1.131432e-48	-8.615850e-47
Msa0848750	Msa0866400	0.802092	6.610560e-49	-8.615850e-47
Msa0848750	Msa0962070	0.809131	2.201603e-50	-8.615850e-47
Msa0848750	Msa0975940	0.810680	1.021938e-50	-8.615850e-47
Msa0848750	Msa1008750	0.804203	2.418402e-49	-8.615850e-47
Msa0848750	Msa1034500	0.807283	5.453090e-50	-8.615850e-47
Msa0848750	Msa1038080	0.810604	1.061440e-50	-8.615850e-47
Msa0848750	Msa1088410	0.809044	2.298554e-50	-8.615850e-47
Msa0848750	Msa1113010	0.800163	1.639102e-48	-8.615850e-47
Msa0848750	Msa1118760	0.809423	1.906236e-50	-8.615850e-47
Msa0848750	Msa1127770	0.820100	8.198235e-53	-8.615850e-47
Msa0848750	Msa1158660	0.807672	4.507562e-50	-8.615850e-47
Msa0848750	Msa1227150	0.805408	1.354421e-49	-8.615850e-47
Msa0848750	Msa1257070	0.813468	2.521385e-51	-8.615850e-47
Msa0848750	Msa1286550	0.807850	4.132403e-50	-8.615850e-47
Msa0848750	Msa1338830	0.806818	6.836959e-50	-8.615850e-47
Msa0848750	Msa1341570	0.802386	5.750773e-49	-8.615850e-47
Msa0848750	Msa1357080	0.808061	3.726468e-50	-8.615850e-47
Msa0848750	Msa1359920	0.804637	1.963218e-49	-8.615850e-47
Msa0848750	Msa1365350	0.800807	1.211896e-48	-8.615850e-47
Msa0848750	Msa1410420	0.802846	4.620772e-49	-8.615850e-47
Msa0848750	Msa1446780	0.815244	1.021205e-51	-8.615850e-47
Msa0848750	Msa1454530	0.804049	2.602741e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0848750	MtrunA17_Chr5g0422541	96.032	252	10	0	1	252	1	252	5.21e-180	494
Msa0848750	MtrunA17_Chr7g0220911	66.087	230	63	3	36	252	23	250	4.99e-105	304
Msa0848750	MtrunA17_Chr4g0034431	73.797	187	49	0	66	252	71	257	3.01e-102	297
Msa0848750	MtrunA17_Chr6g0456971	72.989	174	46	1	80	252	96	269	4.74e-92	272
Msa0848750	MtrunA17_Chr6g0456981	60.426	235	78	5	1	229	1	226	3.72e-90	266
Msa0848750	MtrunA17_Chr8g0364271	53.247	77	24	1	56	120	36	112	4.41e-17	75.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0848750	AT3G25780.1	56.154	260	104	6	1	252	1	258	1.15e-90	268
Msa0848750	AT1G13280.1	63.902	205	71	3	51	252	50	254	2.55e-90	267
Msa0848750	AT3G25770.1	65.591	186	63	1	68	252	68	253	2.78e-87	259
Msa0848750	AT3G25760.1	66.667	180	59	1	74	252	75	254	2.75e-85	254

Find 56 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGAATCTTTGAAGGTGTTTA+TGG	0.136144	5_4:-34577546	Msa0848750:CDS
CCAGAATGAACCTGAGAAAA+AGG	0.235777	5_4:-34577682	Msa0848750:CDS
AAAGTGTAGAACAGCTTAAA+TGG	0.253758	5_4:+34577495	None:intergenic
AAGATTCTTGATGCTGCTTT+TGG	0.258177	5_4:+34578001	None:intergenic
TGTGTTAGGTTAAGCATAAT+TGG	0.266869	5_4:-34577223	Msa0848750:three_prime_UTR
GACTTACCTGTCTTCTTTCC+TGG	0.271265	5_4:-34577201	Msa0848750:three_prime_UTR
GTAAAAGAAAGGGTTGTTAA+AGG	0.298599	5_4:+34578257	None:intergenic
TTAGAAATTATTTATGTGTT+AGG	0.302851	5_4:-34577237	Msa0848750:three_prime_UTR
TGTATTCTTAGAACTTCTTT+TGG	0.308042	5_4:+34578050	None:intergenic
CTTGCTATAACAGGTGGTTC+TGG	0.324436	5_4:-34577567	Msa0848750:CDS
AGCTTCTACTTTGGAGACTA+TGG	0.327242	5_4:-34577636	Msa0848750:CDS
GCAATTTACAGCTTCTACTT+TGG	0.342420	5_4:-34577645	Msa0848750:CDS
AGTAAATCAGCTGGTAAATC+AGG	0.364092	5_4:+34577456	None:intergenic
TTTGAAGAGGAGAGGTAGAA+AGG	0.367019	5_4:+34578163	None:intergenic
GACACATATCTTGCTATAAC+AGG	0.372471	5_4:-34577576	Msa0848750:CDS
GATTTACCAGCTGATTTACT+TGG	0.374651	5_4:-34577453	Msa0848750:CDS
TTCATCATCATCACTTTCAA+TGG	0.399743	5_4:-34578223	Msa0848750:exon
GATGATCAGTTGGTGAAGTT+TGG	0.404018	5_4:+34577357	None:intergenic
CAAACTCTACTCAGGAAACT+TGG	0.405570	5_4:-34577745	Msa0848750:CDS
GAGGAGAGGTAGAAAGGTTG+AGG	0.414060	5_4:+34578169	None:intergenic
AAAAGGTTAGGTATAACTTC+AGG	0.428075	5_4:-34577720	Msa0848750:CDS
ACATGTGGTGATGGATCAAC+AGG	0.432460	5_4:+34577426	None:intergenic
TTTGGTTGTAGATGCTTGCT+TGG	0.457390	5_4:+34578068	None:intergenic
GGTGGTTCTGGAATCTTTGA+AGG	0.458254	5_4:-34577555	Msa0848750:CDS
TGACTTAGTCTAAGGTATGC+AGG	0.462035	5_4:+34577810	None:intergenic
AGGAGAGGTAGAAAGGTTGA+GGG	0.462699	5_4:+34578170	None:intergenic
TCTAACTGTAGCAGAGTTGT+TGG	0.462970	5_4:-34577099	Msa0848750:three_prime_UTR
GTTGGTGAAGTTTGGTAAAG+AGG	0.474236	5_4:+34577365	None:intergenic
TGAGGAAACTGGTAAAAGAA+AGG	0.475591	5_4:+34578246	None:intergenic
TAAAAGAAAGGGTTGTTAAA+GGG	0.476324	5_4:+34578258	None:intergenic
GTGTGGAAAACATTATTGTA+TGG	0.480059	5_4:-34578396	None:intergenic
GAAATTTCTTCTACTTGTGA+AGG	0.484237	5_4:+34578104	None:intergenic
AAGTGTAGAACAGCTTAAAT+GGG	0.495883	5_4:+34577496	None:intergenic
GGCTCAGTAGCCTTAGCAGC+AGG	0.509719	5_4:+34577393	None:intergenic
GGCTTTCCAAGTAAATCAGC+TGG	0.519357	5_4:+34577447	None:intergenic
GTAGCCTTAGCAGCAGGAGA+TGG	0.521268	5_4:+34577399	None:intergenic
CAACACTGCAGCTGCTACAG+AGG	0.521799	5_4:+34577064	None:intergenic
GAGTAGAGTTTGTTGCTGAA+TGG	0.523603	5_4:+34577756	None:intergenic
GCTATTGAAGAAGAATGCAT+TGG	0.528323	5_4:+34578023	None:intergenic
TGAACCATCTCCTGCTGCTA+AGG	0.534209	5_4:-34577403	Msa0848750:CDS
ATGATGATGAATGAGGAAAC+TGG	0.534397	5_4:+34578235	None:intergenic
TATGGTCATATATCAGTTCA+AGG	0.534518	5_4:-34577618	Msa0848750:CDS
AGAGACTAGAAGAAACTACT+TGG	0.543120	5_4:+34578133	None:intergenic
TTATAGCAAGATATGTGTCT+TGG	0.546680	5_4:+34577580	None:intergenic
GAGGAAACTGGTAAAAGAAA+GGG	0.549735	5_4:+34578247	None:intergenic
CATCAAGAATCTTCAAAGCC+AGG	0.550274	5_4:-34577991	Msa0848750:intron
TTCAGCAACAAACTCTACTC+AGG	0.581768	5_4:-34577753	Msa0848750:CDS
GATGGTTCAACATGTGGTGA+TGG	0.598259	5_4:+34577417	None:intergenic
GAAAGTGATGATGATGAATG+AGG	0.602804	5_4:+34578228	None:intergenic
GTGTCTTGGTATGTGAGATA+AGG	0.617679	5_4:+34577594	None:intergenic
GCAGGAGATGGTTCAACATG+TGG	0.619328	5_4:+34577411	None:intergenic
ACATATCTTGCTATAACAGG+TGG	0.657333	5_4:-34577573	Msa0848750:CDS
GAGATCAATGAACGTGACAG+AGG	0.668577	5_4:-34577837	Msa0848750:CDS
CTCTTGATGAGACTACAAAG+AGG	0.687108	5_4:-34577138	Msa0848750:three_prime_UTR
AAAGAGGTTGACAATTGACA+TGG	0.692155	5_4:-34577122	Msa0848750:three_prime_UTR
AAGTTTGGTAAAGAGGCATG+AGG	0.695608	5_4:+34577372	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AACAACTACAATTTATTTTT+TGG	+	chr5_4:34578088-34578107	None:intergenic	15.0%
!!	TTAGAAATTATTTATGTGTT+AGG	-	chr5_4:34578153-34578172	Msa0848750:CDS	15.0%
!!!	AACAACTACAATTTATTTTT+TGG	+	chr5_4:34578088-34578107	None:intergenic	15.0%
!!	TTAGAAATTATTTATGTGTT+AGG	-	chr5_4:34578153-34578172	Msa0848750:CDS	15.0%
!	AATGTGTGAAAAATGTAAGT+GGG	+	chr5_4:34577030-34577049	None:intergenic	25.0%
!!!	GTTAAAGGGAGTTTTATAAA+TGG	+	chr5_4:34577121-34577140	None:intergenic	25.0%
!	TAAAAGAAAGGGTTGTTAAA+GGG	+	chr5_4:34577135-34577154	None:intergenic	25.0%
!!	TGTATTCTTAGAACTTCTTT+TGG	+	chr5_4:34577343-34577362	None:intergenic	25.0%
!!!	TTCTACACTTTTTACTTGAA+GGG	-	chr5_4:34577907-34577926	Msa0848750:intron	25.0%
!	AATGTGTGAAAAATGTAAGT+GGG	+	chr5_4:34577030-34577049	None:intergenic	25.0%
!!!	GTTAAAGGGAGTTTTATAAA+TGG	+	chr5_4:34577121-34577140	None:intergenic	25.0%
!	TAAAAGAAAGGGTTGTTAAA+GGG	+	chr5_4:34577135-34577154	None:intergenic	25.0%
!!	TGTATTCTTAGAACTTCTTT+TGG	+	chr5_4:34577343-34577362	None:intergenic	25.0%
!!!	TTCTACACTTTTTACTTGAA+GGG	-	chr5_4:34577907-34577926	Msa0848750:intron	25.0%
	ATGTGTGAAAAATGTAAGTG+GGG	+	chr5_4:34577029-34577048	None:intergenic	30.0%
	CAATGTGTGAAAAATGTAAG+TGG	+	chr5_4:34577031-34577050	None:intergenic	30.0%
	GTAAAAGAAAGGGTTGTTAA+AGG	+	chr5_4:34577136-34577155	None:intergenic	30.0%
	TTCATCATCATCACTTTCAA+TGG	-	chr5_4:34577167-34577186	Msa0848750:three_prime_UTR	30.0%
!	AATCATTTTCAGAGAACTCA+TGG	+	chr5_4:34577196-34577215	None:intergenic	30.0%
	GAAATTTCTTCTACTTGTGA+AGG	+	chr5_4:34577289-34577308	None:intergenic	30.0%
!!!	CTGATTTTTGACTTAGTCTA+AGG	+	chr5_4:34577591-34577610	None:intergenic	30.0%
	AAAAGGTTAGGTATAACTTC+AGG	-	chr5_4:34577670-34577689	Msa0848750:CDS	30.0%
	TATGGTCATATATCAGTTCA+AGG	-	chr5_4:34577772-34577791	Msa0848750:CDS	30.0%
	TTATAGCAAGATATGTGTCT+TGG	+	chr5_4:34577813-34577832	None:intergenic	30.0%
	AAGTGTAGAACAGCTTAAAT+GGG	+	chr5_4:34577897-34577916	None:intergenic	30.0%
	AAAGTGTAGAACAGCTTAAA+TGG	+	chr5_4:34577898-34577917	None:intergenic	30.0%
!!	GTTCTACACTTTTTACTTGA+AGG	-	chr5_4:34577906-34577925	Msa0848750:intron	30.0%
	TGTGTTAGGTTAAGCATAAT+TGG	-	chr5_4:34578167-34578186	Msa0848750:CDS	30.0%
!!	GTGATGTAAATTGATTTTCC+AGG	+	chr5_4:34578210-34578229	None:intergenic	30.0%
!	ACAATCACATGCTTTTACAT+AGG	-	chr5_4:34578374-34578393	Msa0848750:five_prime_UTR	30.0%
!	AGGAATTCTTTTATAGTCAC+AGG	-	chr5_4:34578394-34578413	Msa0848750:five_prime_UTR	30.0%
	ATGTGTGAAAAATGTAAGTG+GGG	+	chr5_4:34577029-34577048	None:intergenic	30.0%
	CAATGTGTGAAAAATGTAAG+TGG	+	chr5_4:34577031-34577050	None:intergenic	30.0%
	GTAAAAGAAAGGGTTGTTAA+AGG	+	chr5_4:34577136-34577155	None:intergenic	30.0%
	TTCATCATCATCACTTTCAA+TGG	-	chr5_4:34577167-34577186	Msa0848750:three_prime_UTR	30.0%
!	AATCATTTTCAGAGAACTCA+TGG	+	chr5_4:34577196-34577215	None:intergenic	30.0%
	GAAATTTCTTCTACTTGTGA+AGG	+	chr5_4:34577289-34577308	None:intergenic	30.0%
!!!	CTGATTTTTGACTTAGTCTA+AGG	+	chr5_4:34577591-34577610	None:intergenic	30.0%
	AAAAGGTTAGGTATAACTTC+AGG	-	chr5_4:34577670-34577689	Msa0848750:CDS	30.0%
	TATGGTCATATATCAGTTCA+AGG	-	chr5_4:34577772-34577791	Msa0848750:CDS	30.0%
	TTATAGCAAGATATGTGTCT+TGG	+	chr5_4:34577813-34577832	None:intergenic	30.0%
	AAGTGTAGAACAGCTTAAAT+GGG	+	chr5_4:34577897-34577916	None:intergenic	30.0%
	AAAGTGTAGAACAGCTTAAA+TGG	+	chr5_4:34577898-34577917	None:intergenic	30.0%
!!	GTTCTACACTTTTTACTTGA+AGG	-	chr5_4:34577906-34577925	Msa0848750:intron	30.0%
	TGTGTTAGGTTAAGCATAAT+TGG	-	chr5_4:34578167-34578186	Msa0848750:CDS	30.0%
!!	GTGATGTAAATTGATTTTCC+AGG	+	chr5_4:34578210-34578229	None:intergenic	30.0%
!	ACAATCACATGCTTTTACAT+AGG	-	chr5_4:34578374-34578393	Msa0848750:five_prime_UTR	30.0%
!!!	ATTTGTGTGTTTTGACACGT+GGG	+	chr5_4:34577081-34577100	None:intergenic	35.0%
!!!	TATTTGTGTGTTTTGACACG+TGG	+	chr5_4:34577082-34577101	None:intergenic	35.0%
	GAGGAAACTGGTAAAAGAAA+GGG	+	chr5_4:34577146-34577165	None:intergenic	35.0%
	TGAGGAAACTGGTAAAAGAA+AGG	+	chr5_4:34577147-34577166	None:intergenic	35.0%
!	ATGATGATGAATGAGGAAAC+TGG	+	chr5_4:34577158-34577177	None:intergenic	35.0%
!	GAAAGTGATGATGATGAATG+AGG	+	chr5_4:34577165-34577184	None:intergenic	35.0%
!!!	ACTTGGTTTTGAGTTTGAAG+AGG	+	chr5_4:34577243-34577262	None:intergenic	35.0%
	AGAGACTAGAAGAAACTACT+TGG	+	chr5_4:34577260-34577279	None:intergenic	35.0%
	GCTATTGAAGAAGAATGCAT+TGG	+	chr5_4:34577370-34577389	None:intergenic	35.0%
!!!	AAGATTCTTGATGCTGCTTT+TGG	+	chr5_4:34577392-34577411	None:intergenic	35.0%
	CAGAAAATGCTACTAGCAAA+GGG	+	chr5_4:34577451-34577470	None:intergenic	35.0%
	TCAGAAAATGCTACTAGCAA+AGG	+	chr5_4:34577452-34577471	None:intergenic	35.0%
	CAAAAATCAGTGAACTCTCT+TGG	-	chr5_4:34577601-34577620	Msa0848750:CDS	35.0%
	ACTCAGGAAACTTGGAAAAA+AGG	-	chr5_4:34577653-34577672	Msa0848750:CDS	35.0%
	GGAAACTTGGAAAAAAGGTT+AGG	-	chr5_4:34577658-34577677	Msa0848750:CDS	35.0%
	CAGAATGAACCTGAGAAAAA+GGG	-	chr5_4:34577709-34577728	Msa0848750:CDS	35.0%
!	TATCTATCACCCTTTTTCTC+AGG	+	chr5_4:34577721-34577740	None:intergenic	35.0%
	GCAATTTACAGCTTCTACTT+TGG	-	chr5_4:34577745-34577764	Msa0848750:CDS	35.0%
!	GACACATATCTTGCTATAAC+AGG	-	chr5_4:34577814-34577833	Msa0848750:CDS	35.0%
!	ACATATCTTGCTATAACAGG+TGG	-	chr5_4:34577817-34577836	Msa0848750:CDS	35.0%
!!	GGAATCTTTGAAGGTGTTTA+TGG	-	chr5_4:34577844-34577863	Msa0848750:CDS	35.0%
	AGTAAATCAGCTGGTAAATC+AGG	+	chr5_4:34577937-34577956	None:intergenic	35.0%
!	GATTTACCAGCTGATTTACT+TGG	-	chr5_4:34577937-34577956	Msa0848750:intron	35.0%
!	TGATGATGATGATGATCAGT+TGG	+	chr5_4:34578046-34578065	None:intergenic	35.0%
	AAAGAGGTTGACAATTGACA+TGG	-	chr5_4:34578268-34578287	Msa0848750:five_prime_UTR	35.0%
!!!	ATTTGTGTGTTTTGACACGT+GGG	+	chr5_4:34577081-34577100	None:intergenic	35.0%
!!!	TATTTGTGTGTTTTGACACG+TGG	+	chr5_4:34577082-34577101	None:intergenic	35.0%
	GAGGAAACTGGTAAAAGAAA+GGG	+	chr5_4:34577146-34577165	None:intergenic	35.0%
	TGAGGAAACTGGTAAAAGAA+AGG	+	chr5_4:34577147-34577166	None:intergenic	35.0%
!	ATGATGATGAATGAGGAAAC+TGG	+	chr5_4:34577158-34577177	None:intergenic	35.0%
!	GAAAGTGATGATGATGAATG+AGG	+	chr5_4:34577165-34577184	None:intergenic	35.0%
!!!	ACTTGGTTTTGAGTTTGAAG+AGG	+	chr5_4:34577243-34577262	None:intergenic	35.0%
	AGAGACTAGAAGAAACTACT+TGG	+	chr5_4:34577260-34577279	None:intergenic	35.0%
	GCTATTGAAGAAGAATGCAT+TGG	+	chr5_4:34577370-34577389	None:intergenic	35.0%
!!!	AAGATTCTTGATGCTGCTTT+TGG	+	chr5_4:34577392-34577411	None:intergenic	35.0%
	CAGAAAATGCTACTAGCAAA+GGG	+	chr5_4:34577451-34577470	None:intergenic	35.0%
	TCAGAAAATGCTACTAGCAA+AGG	+	chr5_4:34577452-34577471	None:intergenic	35.0%
	CAAAAATCAGTGAACTCTCT+TGG	-	chr5_4:34577601-34577620	Msa0848750:CDS	35.0%
	ACTCAGGAAACTTGGAAAAA+AGG	-	chr5_4:34577653-34577672	Msa0848750:CDS	35.0%
	GGAAACTTGGAAAAAAGGTT+AGG	-	chr5_4:34577658-34577677	Msa0848750:CDS	35.0%
	CAGAATGAACCTGAGAAAAA+GGG	-	chr5_4:34577709-34577728	Msa0848750:CDS	35.0%
!	TATCTATCACCCTTTTTCTC+AGG	+	chr5_4:34577721-34577740	None:intergenic	35.0%
	GCAATTTACAGCTTCTACTT+TGG	-	chr5_4:34577745-34577764	Msa0848750:CDS	35.0%
!	GACACATATCTTGCTATAAC+AGG	-	chr5_4:34577814-34577833	Msa0848750:CDS	35.0%
!	ACATATCTTGCTATAACAGG+TGG	-	chr5_4:34577817-34577836	Msa0848750:CDS	35.0%
!!	GGAATCTTTGAAGGTGTTTA+TGG	-	chr5_4:34577844-34577863	Msa0848750:CDS	35.0%
	AGTAAATCAGCTGGTAAATC+AGG	+	chr5_4:34577937-34577956	None:intergenic	35.0%
!	GATTTACCAGCTGATTTACT+TGG	-	chr5_4:34577937-34577956	Msa0848750:intron	35.0%
!	TGATGATGATGATGATCAGT+TGG	+	chr5_4:34578046-34578065	None:intergenic	35.0%
	AAAGAGGTTGACAATTGACA+TGG	-	chr5_4:34578268-34578287	Msa0848750:five_prime_UTR	35.0%
	TTTGAAGAGGAGAGGTAGAA+AGG	+	chr5_4:34577230-34577249	None:intergenic	40.0%
!!!	GTTTTGAGTTTGAAGAGGAG+AGG	+	chr5_4:34577238-34577257	None:intergenic	40.0%
	TTTGGTTGTAGATGCTTGCT+TGG	+	chr5_4:34577325-34577344	None:intergenic	40.0%
	CATCAAGAATCTTCAAAGCC+AGG	-	chr5_4:34577399-34577418	Msa0848750:CDS	40.0%
!	TGACTTAGTCTAAGGTATGC+AGG	+	chr5_4:34577583-34577602	None:intergenic	40.0%
!!	GAGTAGAGTTTGTTGCTGAA+TGG	+	chr5_4:34577637-34577656	None:intergenic	40.0%
	TTCAGCAACAAACTCTACTC+AGG	-	chr5_4:34577637-34577656	Msa0848750:CDS	40.0%
	CAAACTCTACTCAGGAAACT+TGG	-	chr5_4:34577645-34577664	Msa0848750:CDS	40.0%
!	CCTTTTTCTCAGGTTCATTC+TGG	+	chr5_4:34577711-34577730	None:intergenic	40.0%
	CCAGAATGAACCTGAGAAAA+AGG	-	chr5_4:34577708-34577727	Msa0848750:CDS	40.0%
!	AGCTTCTACTTTGGAGACTA+TGG	-	chr5_4:34577754-34577773	Msa0848750:CDS	40.0%
	GTGTCTTGGTATGTGAGATA+AGG	+	chr5_4:34577799-34577818	None:intergenic	40.0%
!	AAGTTTGGTAAAGAGGCATG+AGG	+	chr5_4:34578021-34578040	None:intergenic	40.0%
!	GTTGGTGAAGTTTGGTAAAG+AGG	+	chr5_4:34578028-34578047	None:intergenic	40.0%
!!	GATGATCAGTTGGTGAAGTT+TGG	+	chr5_4:34578036-34578055	None:intergenic	40.0%
!	GATTTTCCAGGAAAGAAGAC+AGG	+	chr5_4:34578198-34578217	None:intergenic	40.0%
	CTCTTGATGAGACTACAAAG+AGG	-	chr5_4:34578252-34578271	Msa0848750:five_prime_UTR	40.0%
	TCTAACTGTAGCAGAGTTGT+TGG	-	chr5_4:34578291-34578310	Msa0848750:five_prime_UTR	40.0%
	TTTGAAGAGGAGAGGTAGAA+AGG	+	chr5_4:34577230-34577249	None:intergenic	40.0%
!!!	GTTTTGAGTTTGAAGAGGAG+AGG	+	chr5_4:34577238-34577257	None:intergenic	40.0%
	TTTGGTTGTAGATGCTTGCT+TGG	+	chr5_4:34577325-34577344	None:intergenic	40.0%
	CATCAAGAATCTTCAAAGCC+AGG	-	chr5_4:34577399-34577418	Msa0848750:CDS	40.0%
!	TGACTTAGTCTAAGGTATGC+AGG	+	chr5_4:34577583-34577602	None:intergenic	40.0%
!!	GAGTAGAGTTTGTTGCTGAA+TGG	+	chr5_4:34577637-34577656	None:intergenic	40.0%
	TTCAGCAACAAACTCTACTC+AGG	-	chr5_4:34577637-34577656	Msa0848750:CDS	40.0%
	CAAACTCTACTCAGGAAACT+TGG	-	chr5_4:34577645-34577664	Msa0848750:CDS	40.0%
!	CCTTTTTCTCAGGTTCATTC+TGG	+	chr5_4:34577711-34577730	None:intergenic	40.0%
	CCAGAATGAACCTGAGAAAA+AGG	-	chr5_4:34577708-34577727	Msa0848750:CDS	40.0%
!	AGCTTCTACTTTGGAGACTA+TGG	-	chr5_4:34577754-34577773	Msa0848750:CDS	40.0%
	GTGTCTTGGTATGTGAGATA+AGG	+	chr5_4:34577799-34577818	None:intergenic	40.0%
!	AAGTTTGGTAAAGAGGCATG+AGG	+	chr5_4:34578021-34578040	None:intergenic	40.0%
!	GTTGGTGAAGTTTGGTAAAG+AGG	+	chr5_4:34578028-34578047	None:intergenic	40.0%
!!	GATGATCAGTTGGTGAAGTT+TGG	+	chr5_4:34578036-34578055	None:intergenic	40.0%
!	GATTTTCCAGGAAAGAAGAC+AGG	+	chr5_4:34578198-34578217	None:intergenic	40.0%
	CTCTTGATGAGACTACAAAG+AGG	-	chr5_4:34578252-34578271	Msa0848750:five_prime_UTR	40.0%
	TCTAACTGTAGCAGAGTTGT+TGG	-	chr5_4:34578291-34578310	Msa0848750:five_prime_UTR	40.0%
	AGGAGAGGTAGAAAGGTTGA+GGG	+	chr5_4:34577223-34577242	None:intergenic	45.0%
!	CTGAGAAGCATGTACATACC+TGG	+	chr5_4:34577420-34577439	None:intergenic	45.0%
	GAGATCAATGAACGTGACAG+AGG	-	chr5_4:34577553-34577572	Msa0848750:CDS	45.0%
!	CTTGCTATAACAGGTGGTTC+TGG	-	chr5_4:34577823-34577842	Msa0848750:CDS	45.0%
!!	GGTGGTTCTGGAATCTTTGA+AGG	-	chr5_4:34577835-34577854	Msa0848750:CDS	45.0%
	GGCTTTCCAAGTAAATCAGC+TGG	+	chr5_4:34577946-34577965	None:intergenic	45.0%
!!	ACATGTGGTGATGGATCAAC+AGG	+	chr5_4:34577967-34577986	None:intergenic	45.0%
	GATGGTTCAACATGTGGTGA+TGG	+	chr5_4:34577976-34577995	None:intergenic	45.0%
	GACTTACCTGTCTTCTTTCC+TGG	-	chr5_4:34578189-34578208	Msa0848750:CDS	45.0%
	AGGAGAGGTAGAAAGGTTGA+GGG	+	chr5_4:34577223-34577242	None:intergenic	45.0%
!	CTGAGAAGCATGTACATACC+TGG	+	chr5_4:34577420-34577439	None:intergenic	45.0%
	GAGATCAATGAACGTGACAG+AGG	-	chr5_4:34577553-34577572	Msa0848750:CDS	45.0%
!	CTTGCTATAACAGGTGGTTC+TGG	-	chr5_4:34577823-34577842	Msa0848750:CDS	45.0%
!!	GGTGGTTCTGGAATCTTTGA+AGG	-	chr5_4:34577835-34577854	Msa0848750:CDS	45.0%
	GGCTTTCCAAGTAAATCAGC+TGG	+	chr5_4:34577946-34577965	None:intergenic	45.0%
!!	ACATGTGGTGATGGATCAAC+AGG	+	chr5_4:34577967-34577986	None:intergenic	45.0%
	GATGGTTCAACATGTGGTGA+TGG	+	chr5_4:34577976-34577995	None:intergenic	45.0%
	GACTTACCTGTCTTCTTTCC+TGG	-	chr5_4:34578189-34578208	Msa0848750:CDS	45.0%
	GAGGAGAGGTAGAAAGGTTG+AGG	+	chr5_4:34577224-34577243	None:intergenic	50.0%
	GCAGGAGATGGTTCAACATG+TGG	+	chr5_4:34577982-34578001	None:intergenic	50.0%
	TGAACCATCTCCTGCTGCTA+AGG	-	chr5_4:34577987-34578006	Msa0848750:intron	50.0%
	GAGGAGAGGTAGAAAGGTTG+AGG	+	chr5_4:34577224-34577243	None:intergenic	50.0%
	GCAGGAGATGGTTCAACATG+TGG	+	chr5_4:34577982-34578001	None:intergenic	50.0%
	TGAACCATCTCCTGCTGCTA+AGG	-	chr5_4:34577987-34578006	Msa0848750:intron	50.0%
!	GTAGCCTTAGCAGCAGGAGA+TGG	+	chr5_4:34577994-34578013	None:intergenic	55.0%
	CAACACTGCAGCTGCTACAG+AGG	+	chr5_4:34578329-34578348	None:intergenic	55.0%
!	GTAGCCTTAGCAGCAGGAGA+TGG	+	chr5_4:34577994-34578013	None:intergenic	55.0%
	CAACACTGCAGCTGCTACAG+AGG	+	chr5_4:34578329-34578348	None:intergenic	55.0%
!	GGCTCAGTAGCCTTAGCAGC+AGG	+	chr5_4:34578000-34578019	None:intergenic	60.0%
!	GGCTCAGTAGCCTTAGCAGC+AGG	+	chr5_4:34578000-34578019	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	34576998	34578414	34576998	ID=Msa0848750;Name=Msa0848750
chr5_4	mRNA	34576998	34578414	34576998	ID=Msa0848750-mRNA-1;Parent=Msa0848750;Name=Msa0848750-mRNA-1;_AED=0.00;_eAED=0.00;_QI=188\|1\|1\|1\|1\|1\|2\|364\|252
chr5_4	exon	34576998	34577885	34576998	ID=Msa0848750-mRNA-1:exon:11658;Parent=Msa0848750-mRNA-1
chr5_4	exon	34577992	34578414	34577992	ID=Msa0848750-mRNA-1:exon:11657;Parent=Msa0848750-mRNA-1
chr5_4	five_prime_UTR	34578227	34578414	34578227	ID=Msa0848750-mRNA-1:five_prime_utr;Parent=Msa0848750-mRNA-1
chr5_4	CDS	34577992	34578226	34577992	ID=Msa0848750-mRNA-1:cds;Parent=Msa0848750-mRNA-1
chr5_4	CDS	34577362	34577885	34577362	ID=Msa0848750-mRNA-1:cds;Parent=Msa0848750-mRNA-1
chr5_4	three_prime_UTR	34576998	34577361	34576998	ID=Msa0848750-mRNA-1:three_prime_utr;Parent=Msa0848750-mRNA-1

Gene Sequence

>Msa0848750

ATGGCATCCATGAGTTCTCTGAAAATGATTTCTTCCCTCAACCTTTCTACCTCTCCTCTTCAAACTCAAAACCAAGTAGTTTCTTCTAGTCTCTCTCTATCCTTCACAAGTAGAAGAAATTTCAACACTTCAATCACCAAGCAAGCATCTACAACCAAAAGAAGTTCTAAGAATACAAGAACCAATGCATTCTTCTTCAATAGCCAAAAGCAGCATCAAGAATCTTCAAAGCCAGCTAAAGTTCAAGAACTTTTTGTGTATGAGATCAATGAACGTGACAGAGGAAGTCCTGCATACCTTAGACTAAGTCAAAAATCAGTGAACTCTCTTGGAGATTTAGTACCATTCAGCAACAAACTCTACTCAGGAAACTTGGAAAAAAGGTTAGGTATAACTTCAGGTTTATGTATACTGATCCAGAATGAACCTGAGAAAAAGGGTGATAGATATGAAGCAATTTACAGCTTCTACTTTGGAGACTATGGTCATATATCAGTTCAAGGACCTTATCTCACATACCAAGACACATATCTTGCTATAACAGGTGGTTCTGGAATCTTTGAAGGTGTTTATGGACAAGTTAAACTTCAACAACTTGTGTTCCCATTTAAGCTGTTCTACACTTTTTACTTGAAGGGTGTTCCTGATTTACCAGCTGATTTACTTGGAAAGCCTGTTGATCCATCACCACATGTTGAACCATCTCCTGCTGCTAAGGCTACTGAGCCTCATGCCTCTTTACCAAACTTCACCAACTGA

Protein sequence

>Msa0848750

MASMSSLKMISSLNLSTSPLQTQNQVVSSSLSLSFTSRRNFNTSITKQASTTKRSSKNTRTNAFFFNSQKQHQESSKPAKVQELFVYEINERDRGSPAYLRLSQKSVNSLGDLVPFSNKLYSGNLEKRLGITSGLCILIQNEPEKKGDRYEAIYSFYFGDYGHISVQGPYLTYQDTYLAITGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGVPDLPADLLGKPVDPSPHVEPSPAAKATEPHASLPNFTN*