AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1127770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1127770 MtrunA17_Chr7g0270921 97.586 290 5 2 1 289 1 289 0.0 578
Msa1127770 MtrunA17_Chr1g0213571 49.275 69 33 2 214 280 41 109 2.93e-13 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1127770 AT2G46940.1 41.497 294 122 12 1 286 1 252 9.58e-52 170
Msa1127770 AT3G62070.1 45.977 261 89 12 37 289 12 228 9.49e-45 151
Msa1127770 AT4G01670.1 42.160 287 101 8 19 287 4 243 1.27e-42 147
Msa1127770 AT2G31560.2 41.489 94 28 2 214 280 102 195 3.16e-13 67.8
Msa1127770 AT2G31560.1 41.489 94 28 2 214 280 102 195 3.16e-13 67.8
Msa1127770 AT2G31560.3 41.489 94 28 2 214 280 102 195 3.16e-13 67.8
Msa1127770 AT2G43340.1 41.489 94 28 2 214 280 89 182 9.36e-13 65.9
Msa1127770 AT1G05870.4 42.105 95 27 3 214 280 88 182 3.00e-12 64.7
Msa1127770 AT1G05870.12 42.105 95 27 3 214 280 88 182 3.00e-12 64.7
Msa1127770 AT1G05870.8 42.105 95 27 3 214 280 88 182 3.00e-12 64.7
Msa1127770 AT1G05870.1 42.105 95 27 3 214 280 88 182 3.00e-12 64.7
Msa1127770 AT1G05870.7 42.105 95 27 3 214 280 88 182 3.00e-12 64.7
Msa1127770 AT1G05870.2 42.105 95 27 3 214 280 88 182 3.00e-12 64.7
Msa1127770 AT1G05870.10 42.105 95 27 3 214 280 88 182 3.00e-12 64.7
Msa1127770 AT1G05870.5 42.105 95 27 3 214 280 88 182 3.00e-12 64.7
Msa1127770 AT1G05870.9 42.105 95 27 3 214 280 88 182 3.00e-12 64.7
Msa1127770 AT1G05870.3 42.105 95 27 3 214 280 88 182 3.00e-12 64.7
Msa1127770 AT1G05870.6 42.105 95 27 3 214 280 88 182 3.00e-12 64.7
Msa1127770 AT1G05870.11 42.105 95 27 3 214 280 88 182 3.00e-12 64.7

Find 78 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATAGTTGGGAGAATTTA+TGG 0.098125 7_3:+79451327 Msa1127770:CDS
AGAAGAGTGTATTATATTAA+TGG 0.264708 7_3:-79450756 None:intergenic
TAGGAGTTTGTGTATGGATT+TGG 0.274372 7_3:+79451463 Msa1127770:CDS
AGAAACAAAGGAAAGTAGTT+TGG 0.276827 7_3:+79451253 Msa1127770:CDS
GTAATTCACCTATTGCTAAT+TGG 0.279198 7_3:+79451585 Msa1127770:CDS
GTATTAGCTATCAAGAAAAT+TGG 0.318702 7_3:-79451928 None:intergenic
GTTAAAGCTTGTAGAGATCT+TGG 0.319724 7_3:+79451491 Msa1127770:CDS
AGTCGTGCCTTCACATCTCT+TGG 0.356137 7_3:-79451847 None:intergenic
AGGTAGTTGTTATTCGTTAC+CGG 0.356574 7_3:+79451148 Msa1127770:CDS
CTGAAAGCCTTGACAAGTTA+TGG 0.375744 7_3:-79450944 None:intergenic
AGGAAAGTAGTTTGGGAGGT+AGG 0.378983 7_3:+79451261 Msa1127770:CDS
AAATAGTTGGGAGAATTTAT+GGG 0.384282 7_3:+79451328 Msa1127770:CDS
ATCAGCTTCAAAACTTTCAA+TGG 0.388916 7_3:-79451033 None:intergenic
GAAACAAAGGAAAGTAGTTT+GGG 0.390177 7_3:+79451254 Msa1127770:CDS
TGGGAATAGGAGTTTGTGTA+TGG 0.391612 7_3:+79451457 Msa1127770:CDS
CTGGGGTGATGGTGATTACT+AGG 0.398778 7_3:+79451426 Msa1127770:CDS
ACCACCAAGACGGAGGAGTT+TGG 0.404035 7_3:+79451175 Msa1127770:CDS
TTGGTTCCGGTGAGTGTTGT+TGG 0.406202 7_3:+79451194 Msa1127770:CDS
TGGGTGTCATGAGCCGTATT+TGG 0.411466 7_3:-79451908 None:intergenic
ATCATTCGTTTCTTGTGATA+AGG 0.412876 7_3:-79450705 None:intergenic
AAACTCCTATTCCCACCTTT+AGG 0.424753 7_3:-79451449 None:intergenic
TTCATCTTGAATTGTGATCA+TGG 0.426005 7_3:-79450856 None:intergenic
GGAGAGAGTGATCAGAGTAC+TGG 0.429926 7_3:+79451407 Msa1127770:CDS
GTTTGGGAGGTAGGAGAAGA+AGG 0.431849 7_3:+79451270 Msa1127770:CDS
ACCCGAAAATCCAGCACCCT+TGG 0.435217 7_3:-79452102 None:intergenic
ATAGCATCTGCCACCAAATA+CGG 0.446123 7_3:+79451895 Msa1127770:CDS
CTAGGCCTAAAGGTGGGAAT+AGG 0.446339 7_3:+79451444 Msa1127770:CDS
GAATGAGAAGTGTGTTTGAA+AGG 0.457694 7_3:+79451303 Msa1127770:CDS
GTAGGAGAAGAAGGAGGAGA+AGG 0.459589 7_3:+79451279 Msa1127770:CDS
TAGAGATCTTGGATTTGAGT+TGG 0.463756 7_3:+79451502 Msa1127770:CDS
GAGATTCGCCAATTAGCAAT+AGG 0.470838 7_3:-79451593 None:intergenic
CTCCGTCTTGGTGGTGTCAC+CGG 0.472824 7_3:-79451167 None:intergenic
GTTTGAAAGGGGAAATAGTT+GGG 0.473057 7_3:+79451316 Msa1127770:CDS
GATGATGATTATATTAATGA+TGG 0.473168 7_3:+79450894 Msa1127770:CDS
TTAGAGAATGGTGTGAATAG+TGG 0.473221 7_3:+79451386 Msa1127770:CDS
TCTGGCTCTGAAAATGAATC+AGG 0.473699 7_3:+79451128 Msa1127770:CDS
CTACAACCAGGGTTGTCCTC+TGG 0.474101 7_3:+79451110 Msa1127770:CDS
TATTAGCTATCAAGAAAATT+GGG 0.476538 7_3:-79451927 None:intergenic
GAGAAAGAGAAATTAGAGAA+TGG 0.488744 7_3:+79451374 Msa1127770:CDS
AATGAGAAGTGTGTTTGAAA+GGG 0.496838 7_3:+79451304 Msa1127770:CDS
CCCGAAAATCCAGCACCCTT+GGG 0.499548 7_3:-79452101 None:intergenic
ACCAAACTCCTCCGTCTTGG+TGG 0.500700 7_3:-79451176 None:intergenic
AAGACGGAGGAGTTTGGTTC+CGG 0.500715 7_3:+79451181 Msa1127770:CDS
GAGAGAGTGATCAGAGTACT+GGG 0.504015 7_3:+79451408 Msa1127770:CDS
TGTTTGAAAGGGGAAATAGT+TGG 0.505309 7_3:+79451315 Msa1127770:CDS
ATTGCTAATTGGCGAATCTC+CGG 0.508950 7_3:+79451596 Msa1127770:CDS
TTCACTCCAACAACACTCAC+CGG 0.546445 7_3:-79451200 None:intergenic
AATTGGCGAATCTCCGGTCC+CGG 0.547996 7_3:+79451602 Msa1127770:CDS
GGAACCAAACTCCTCCGTCT+TGG 0.552249 7_3:-79451179 None:intergenic
ATGGTGATTACTAGGCCTAA+AGG 0.564020 7_3:+79451434 Msa1127770:CDS
AAATTGAGAATTACCGGGAC+CGG 0.564355 7_3:-79451615 None:intergenic
ATGAGAAGTGTGTTTGAAAG+GGG 0.566156 7_3:+79451305 Msa1127770:CDS
AAAATCACCATAACTTGTCA+AGG 0.567296 7_3:+79450937 Msa1127770:CDS
AAAATTTGGCATAAATAGAG+TGG 0.569989 7_3:+79450637 Msa1127770:five_prime_UTR
ACAAAGGAAAGTAGTTTGGG+AGG 0.570208 7_3:+79451257 Msa1127770:CDS
CATTCTATAACTGATCATAG+TGG 0.570982 7_3:-79452030 None:intergenic
ATGATGATTATATTAATGAT+GGG 0.578381 7_3:+79450895 Msa1127770:CDS
TGAAGCAAGAAAAGAAACAA+AGG 0.581851 7_3:+79451241 Msa1127770:CDS
ACGACTCAAAGTGTGGGCAC+AGG 0.585079 7_3:+79451864 Msa1127770:CDS
TGATGATCCAAGAGATGTGA+AGG 0.588464 7_3:+79451840 Msa1127770:CDS
TGAAGGCACGACTCAAAGTG+TGG 0.596523 7_3:+79451857 Msa1127770:CDS
TGATCAGAGTACTGGGGTGA+TGG 0.602328 7_3:+79451415 Msa1127770:CDS
GTGTCATGAGCCGTATTTGG+TGG 0.611631 7_3:-79451905 None:intergenic
TGGGAGGTAGGAGAAGAAGG+AGG 0.614935 7_3:+79451273 Msa1127770:CDS
TCAGAGCCAGAGGACAACCC+TGG 0.618857 7_3:-79451116 None:intergenic
GATGATCAGTTACTACAACC+AGG 0.625986 7_3:+79451098 Msa1127770:CDS
ATGATCAGTTACTACAACCA+GGG 0.630170 7_3:+79451099 Msa1127770:CDS
GTGATTACTAGGCCTAAAGG+TGG 0.635360 7_3:+79451437 Msa1127770:CDS
TACCGGTGACACCACCAAGA+CGG 0.643200 7_3:+79451165 Msa1127770:CDS
ACACTTGATACTAGTAGTGG+TGG 0.643694 7_3:+79451563 Msa1127770:CDS
TCAACACTTGATACTAGTAG+TGG 0.666554 7_3:+79451560 Msa1127770:CDS
GAAGGCACGACTCAAAGTGT+GGG 0.668787 7_3:+79451858 Msa1127770:CDS
TGATTACTAGGCCTAAAGGT+GGG 0.670590 7_3:+79451438 Msa1127770:CDS
GGACAAGTGTGACATACACA+TGG 0.672211 7_3:-79451012 None:intergenic
CGGTGACACCACCAAGACGG+AGG 0.698426 7_3:+79451168 Msa1127770:CDS
TATACACTTCCACTGTACAG+AGG 0.707736 7_3:-79452142 None:intergenic
GATGGTGGTGATGAAGCAGA+TGG 0.717318 7_3:+79451053 Msa1127770:CDS
AGAGAGTGATCAGAGTACTG+GGG 0.764816 7_3:+79451409 Msa1127770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTGTTTTATATTATGT+AGG + chr7_3:79451817-79451836 Msa1127770:intron 10.0%
!!! TCATTGTATTTTTTTTTTTT+TGG + chr7_3:79452057-79452076 Msa1127770:three_prime_UTR 10.0%
!!! ATTTTTGTTTTATATTATGT+AGG + chr7_3:79451817-79451836 Msa1127770:intron 10.0%
!!! TCATTGTATTTTTTTTTTTT+TGG + chr7_3:79452057-79452076 Msa1127770:three_prime_UTR 10.0%
!! ATGATGATTATATTAATGAT+GGG + chr7_3:79450895-79450914 Msa1127770:CDS 15.0%
!! ATAAACATTATAAGATTGTT+TGG + chr7_3:79451686-79451705 Msa1127770:intron 15.0%
!! ATGATGATTATATTAATGAT+GGG + chr7_3:79450895-79450914 Msa1127770:CDS 15.0%
!! ATAAACATTATAAGATTGTT+TGG + chr7_3:79451686-79451705 Msa1127770:intron 15.0%
!!! AGAAGAGTGTATTATATTAA+TGG - chr7_3:79450759-79450778 None:intergenic 20.0%
!!! GTACGTTCTTTTTTTATATA+TGG + chr7_3:79450821-79450840 Msa1127770:exon 20.0%
!! GATGATGATTATATTAATGA+TGG + chr7_3:79450894-79450913 Msa1127770:CDS 20.0%
!! AAAACAATTTATGACATGTT+CGG + chr7_3:79451720-79451739 Msa1127770:intron 20.0%
!! TATTAGCTATCAAGAAAATT+GGG - chr7_3:79451930-79451949 None:intergenic 20.0%
!!! AGAAGAGTGTATTATATTAA+TGG - chr7_3:79450759-79450778 None:intergenic 20.0%
!!! GTACGTTCTTTTTTTATATA+TGG + chr7_3:79450821-79450840 Msa1127770:exon 20.0%
!! GATGATGATTATATTAATGA+TGG + chr7_3:79450894-79450913 Msa1127770:CDS 20.0%
!! AAAACAATTTATGACATGTT+CGG + chr7_3:79451720-79451739 Msa1127770:intron 20.0%
!! TATTAGCTATCAAGAAAATT+GGG - chr7_3:79451930-79451949 None:intergenic 20.0%
! AAAATTTGGCATAAATAGAG+TGG + chr7_3:79450637-79450656 Msa1127770:five_prime_UTR 25.0%
!!! AAGAACGTACTATTTTGTTT+TGG - chr7_3:79450811-79450830 None:intergenic 25.0%
! AAATAGTTGGGAGAATTTAT+GGG + chr7_3:79451328-79451347 Msa1127770:CDS 25.0%
! GTATTAGCTATCAAGAAAAT+TGG - chr7_3:79451931-79451950 None:intergenic 25.0%
!!! TAATACCTACTTCCTTTTTT+TGG + chr7_3:79451945-79451964 Msa1127770:three_prime_UTR 25.0%
!!! TTGTCATAAATTTTTTCCCA+AGG + chr7_3:79452085-79452104 Msa1127770:three_prime_UTR 25.0%
!!! TGTCATAAATTTTTTCCCAA+GGG + chr7_3:79452086-79452105 Msa1127770:three_prime_UTR 25.0%
!!! TTTTTGTTTAAACTGCTTAC+TGG + chr7_3:79452172-79452191 Msa1127770:three_prime_UTR 25.0%
! AAAATTTGGCATAAATAGAG+TGG + chr7_3:79450637-79450656 Msa1127770:five_prime_UTR 25.0%
!!! AAGAACGTACTATTTTGTTT+TGG - chr7_3:79450811-79450830 None:intergenic 25.0%
! AAATAGTTGGGAGAATTTAT+GGG + chr7_3:79451328-79451347 Msa1127770:CDS 25.0%
! GTATTAGCTATCAAGAAAAT+TGG - chr7_3:79451931-79451950 None:intergenic 25.0%
!!! TAATACCTACTTCCTTTTTT+TGG + chr7_3:79451945-79451964 Msa1127770:three_prime_UTR 25.0%
!!! TTGTCATAAATTTTTTCCCA+AGG + chr7_3:79452085-79452104 Msa1127770:three_prime_UTR 25.0%
!!! TGTCATAAATTTTTTCCCAA+GGG + chr7_3:79452086-79452105 Msa1127770:three_prime_UTR 25.0%
!!! TTTTTGTTTAAACTGCTTAC+TGG + chr7_3:79452172-79452191 Msa1127770:three_prime_UTR 25.0%
AATTAGTAGTAGTAGTAGAG+GGG - chr7_3:79450675-79450694 None:intergenic 30.0%
GAATTAGTAGTAGTAGTAGA+GGG - chr7_3:79450676-79450695 None:intergenic 30.0%
AGAATTAGTAGTAGTAGTAG+AGG - chr7_3:79450677-79450696 None:intergenic 30.0%
ATCATTCGTTTCTTGTGATA+AGG - chr7_3:79450708-79450727 None:intergenic 30.0%
TTCATCTTGAATTGTGATCA+TGG - chr7_3:79450859-79450878 None:intergenic 30.0%
! AAAATCACCATAACTTGTCA+AGG + chr7_3:79450937-79450956 Msa1127770:CDS 30.0%
ATCAGCTTCAAAACTTTCAA+TGG - chr7_3:79451036-79451055 None:intergenic 30.0%
!!! ATTGAAAGTTTTGAAGCTGA+TGG + chr7_3:79451035-79451054 Msa1127770:CDS 30.0%
TGAAGCAAGAAAAGAAACAA+AGG + chr7_3:79451241-79451260 Msa1127770:CDS 30.0%
AGAAACAAAGGAAAGTAGTT+TGG + chr7_3:79451253-79451272 Msa1127770:CDS 30.0%
GAAACAAAGGAAAGTAGTTT+GGG + chr7_3:79451254-79451273 Msa1127770:CDS 30.0%
! AATGAGAAGTGTGTTTGAAA+GGG + chr7_3:79451304-79451323 Msa1127770:CDS 30.0%
GAAATAGTTGGGAGAATTTA+TGG + chr7_3:79451327-79451346 Msa1127770:CDS 30.0%
GAGAAAGAGAAATTAGAGAA+TGG + chr7_3:79451374-79451393 Msa1127770:CDS 30.0%
GTAATTCACCTATTGCTAAT+TGG + chr7_3:79451585-79451604 Msa1127770:CDS 30.0%
AACCAAAATTGAGAATTACC+GGG - chr7_3:79451623-79451642 None:intergenic 30.0%
GAACCAAAATTGAGAATTAC+CGG - chr7_3:79451624-79451643 None:intergenic 30.0%
! TTTGGTTCATATTTCCGATT+AGG + chr7_3:79451636-79451655 Msa1127770:intron 30.0%
TAAGCGGGTATCATATATTA+TGG - chr7_3:79451764-79451783 None:intergenic 30.0%
CATTCTATAACTGATCATAG+TGG - chr7_3:79452033-79452052 None:intergenic 30.0%
AATTAGTAGTAGTAGTAGAG+GGG - chr7_3:79450675-79450694 None:intergenic 30.0%
GAATTAGTAGTAGTAGTAGA+GGG - chr7_3:79450676-79450695 None:intergenic 30.0%
AGAATTAGTAGTAGTAGTAG+AGG - chr7_3:79450677-79450696 None:intergenic 30.0%
ATCATTCGTTTCTTGTGATA+AGG - chr7_3:79450708-79450727 None:intergenic 30.0%
TTCATCTTGAATTGTGATCA+TGG - chr7_3:79450859-79450878 None:intergenic 30.0%
! AAAATCACCATAACTTGTCA+AGG + chr7_3:79450937-79450956 Msa1127770:CDS 30.0%
ATCAGCTTCAAAACTTTCAA+TGG - chr7_3:79451036-79451055 None:intergenic 30.0%
!!! ATTGAAAGTTTTGAAGCTGA+TGG + chr7_3:79451035-79451054 Msa1127770:CDS 30.0%
TGAAGCAAGAAAAGAAACAA+AGG + chr7_3:79451241-79451260 Msa1127770:CDS 30.0%
AGAAACAAAGGAAAGTAGTT+TGG + chr7_3:79451253-79451272 Msa1127770:CDS 30.0%
GAAACAAAGGAAAGTAGTTT+GGG + chr7_3:79451254-79451273 Msa1127770:CDS 30.0%
! AATGAGAAGTGTGTTTGAAA+GGG + chr7_3:79451304-79451323 Msa1127770:CDS 30.0%
GAAATAGTTGGGAGAATTTA+TGG + chr7_3:79451327-79451346 Msa1127770:CDS 30.0%
GAGAAAGAGAAATTAGAGAA+TGG + chr7_3:79451374-79451393 Msa1127770:CDS 30.0%
GTAATTCACCTATTGCTAAT+TGG + chr7_3:79451585-79451604 Msa1127770:CDS 30.0%
AACCAAAATTGAGAATTACC+GGG - chr7_3:79451623-79451642 None:intergenic 30.0%
GAACCAAAATTGAGAATTAC+CGG - chr7_3:79451624-79451643 None:intergenic 30.0%
! TTTGGTTCATATTTCCGATT+AGG + chr7_3:79451636-79451655 Msa1127770:intron 30.0%
TAAGCGGGTATCATATATTA+TGG - chr7_3:79451764-79451783 None:intergenic 30.0%
CATTCTATAACTGATCATAG+TGG - chr7_3:79452033-79452052 None:intergenic 30.0%
ATGATCAGTTACTACAACCA+GGG + chr7_3:79451099-79451118 Msa1127770:CDS 35.0%
! AGGTAGTTGTTATTCGTTAC+CGG + chr7_3:79451148-79451167 Msa1127770:CDS 35.0%
! GAATGAGAAGTGTGTTTGAA+AGG + chr7_3:79451303-79451322 Msa1127770:CDS 35.0%
! ATGAGAAGTGTGTTTGAAAG+GGG + chr7_3:79451305-79451324 Msa1127770:CDS 35.0%
TGTTTGAAAGGGGAAATAGT+TGG + chr7_3:79451315-79451334 Msa1127770:CDS 35.0%
GTTTGAAAGGGGAAATAGTT+GGG + chr7_3:79451316-79451335 Msa1127770:CDS 35.0%
TTAGAGAATGGTGTGAATAG+TGG + chr7_3:79451386-79451405 Msa1127770:CDS 35.0%
TAGGAGTTTGTGTATGGATT+TGG + chr7_3:79451463-79451482 Msa1127770:CDS 35.0%
GTTAAAGCTTGTAGAGATCT+TGG + chr7_3:79451491-79451510 Msa1127770:CDS 35.0%
TAGAGATCTTGGATTTGAGT+TGG + chr7_3:79451502-79451521 Msa1127770:CDS 35.0%
TCAACACTTGATACTAGTAG+TGG + chr7_3:79451560-79451579 Msa1127770:CDS 35.0%
! CTCGAATAAGTTGACCTAAT+CGG - chr7_3:79451653-79451672 None:intergenic 35.0%
TCGAACGCTTATAACTTAAG+CGG - chr7_3:79451780-79451799 None:intergenic 35.0%
AATCGCCAAAAAAAGGAAGT+AGG - chr7_3:79451953-79451972 None:intergenic 35.0%
ATGATCAGTTACTACAACCA+GGG + chr7_3:79451099-79451118 Msa1127770:CDS 35.0%
! AGGTAGTTGTTATTCGTTAC+CGG + chr7_3:79451148-79451167 Msa1127770:CDS 35.0%
! GAATGAGAAGTGTGTTTGAA+AGG + chr7_3:79451303-79451322 Msa1127770:CDS 35.0%
! ATGAGAAGTGTGTTTGAAAG+GGG + chr7_3:79451305-79451324 Msa1127770:CDS 35.0%
TGTTTGAAAGGGGAAATAGT+TGG + chr7_3:79451315-79451334 Msa1127770:CDS 35.0%
GTTTGAAAGGGGAAATAGTT+GGG + chr7_3:79451316-79451335 Msa1127770:CDS 35.0%
TTAGAGAATGGTGTGAATAG+TGG + chr7_3:79451386-79451405 Msa1127770:CDS 35.0%
TAGGAGTTTGTGTATGGATT+TGG + chr7_3:79451463-79451482 Msa1127770:CDS 35.0%
GTTAAAGCTTGTAGAGATCT+TGG + chr7_3:79451491-79451510 Msa1127770:CDS 35.0%
TAGAGATCTTGGATTTGAGT+TGG + chr7_3:79451502-79451521 Msa1127770:CDS 35.0%
TCAACACTTGATACTAGTAG+TGG + chr7_3:79451560-79451579 Msa1127770:CDS 35.0%
! CTCGAATAAGTTGACCTAAT+CGG - chr7_3:79451653-79451672 None:intergenic 35.0%
TCGAACGCTTATAACTTAAG+CGG - chr7_3:79451780-79451799 None:intergenic 35.0%
AATCGCCAAAAAAAGGAAGT+AGG - chr7_3:79451953-79451972 None:intergenic 35.0%
CTGAAAGCCTTGACAAGTTA+TGG - chr7_3:79450947-79450966 None:intergenic 40.0%
!!! GAAAGTTTTGAAGCTGATGG+TGG + chr7_3:79451038-79451057 Msa1127770:CDS 40.0%
! GATGGTGAATTTTCTGCTGA+TGG + chr7_3:79451071-79451090 Msa1127770:CDS 40.0%
GATGATCAGTTACTACAACC+AGG + chr7_3:79451098-79451117 Msa1127770:CDS 40.0%
! TGATTCATTTTCAGAGCCAG+AGG - chr7_3:79451129-79451148 None:intergenic 40.0%
!! TCTGGCTCTGAAAATGAATC+AGG + chr7_3:79451128-79451147 Msa1127770:CDS 40.0%
ACAAAGGAAAGTAGTTTGGG+AGG + chr7_3:79451257-79451276 Msa1127770:CDS 40.0%
ATGGTGATTACTAGGCCTAA+AGG + chr7_3:79451434-79451453 Msa1127770:CDS 40.0%
TGATTACTAGGCCTAAAGGT+GGG + chr7_3:79451438-79451457 Msa1127770:CDS 40.0%
AAACTCCTATTCCCACCTTT+AGG - chr7_3:79451452-79451471 None:intergenic 40.0%
TGGGAATAGGAGTTTGTGTA+TGG + chr7_3:79451457-79451476 Msa1127770:CDS 40.0%
ACACTTGATACTAGTAGTGG+TGG + chr7_3:79451563-79451582 Msa1127770:CDS 40.0%
GAGATTCGCCAATTAGCAAT+AGG - chr7_3:79451596-79451615 None:intergenic 40.0%
ATTGCTAATTGGCGAATCTC+CGG + chr7_3:79451596-79451615 Msa1127770:CDS 40.0%
AAATTGAGAATTACCGGGAC+CGG - chr7_3:79451618-79451637 None:intergenic 40.0%
! GTCCCGGTAATTCTCAATTT+TGG + chr7_3:79451618-79451637 Msa1127770:intron 40.0%
CGAACGCTTATAACTTAAGC+GGG - chr7_3:79451779-79451798 None:intergenic 40.0%
TGATGATCCAAGAGATGTGA+AGG + chr7_3:79451840-79451859 Msa1127770:CDS 40.0%
ATAGCATCTGCCACCAAATA+CGG + chr7_3:79451895-79451914 Msa1127770:CDS 40.0%
CTGTCTCAATCGCCAAAAAA+AGG - chr7_3:79451960-79451979 None:intergenic 40.0%
!!! AAATTTTTTCCCAAGGGTGC+TGG + chr7_3:79452092-79452111 Msa1127770:three_prime_UTR 40.0%
TATACACTTCCACTGTACAG+AGG - chr7_3:79452145-79452164 None:intergenic 40.0%
CTGAAAGCCTTGACAAGTTA+TGG - chr7_3:79450947-79450966 None:intergenic 40.0%
!!! GAAAGTTTTGAAGCTGATGG+TGG + chr7_3:79451038-79451057 Msa1127770:CDS 40.0%
! GATGGTGAATTTTCTGCTGA+TGG + chr7_3:79451071-79451090 Msa1127770:CDS 40.0%
GATGATCAGTTACTACAACC+AGG + chr7_3:79451098-79451117 Msa1127770:CDS 40.0%
! TGATTCATTTTCAGAGCCAG+AGG - chr7_3:79451129-79451148 None:intergenic 40.0%
!! TCTGGCTCTGAAAATGAATC+AGG + chr7_3:79451128-79451147 Msa1127770:CDS 40.0%
ACAAAGGAAAGTAGTTTGGG+AGG + chr7_3:79451257-79451276 Msa1127770:CDS 40.0%
ATGGTGATTACTAGGCCTAA+AGG + chr7_3:79451434-79451453 Msa1127770:CDS 40.0%
TGATTACTAGGCCTAAAGGT+GGG + chr7_3:79451438-79451457 Msa1127770:CDS 40.0%
AAACTCCTATTCCCACCTTT+AGG - chr7_3:79451452-79451471 None:intergenic 40.0%
TGGGAATAGGAGTTTGTGTA+TGG + chr7_3:79451457-79451476 Msa1127770:CDS 40.0%
ACACTTGATACTAGTAGTGG+TGG + chr7_3:79451563-79451582 Msa1127770:CDS 40.0%
GAGATTCGCCAATTAGCAAT+AGG - chr7_3:79451596-79451615 None:intergenic 40.0%
ATTGCTAATTGGCGAATCTC+CGG + chr7_3:79451596-79451615 Msa1127770:CDS 40.0%
AAATTGAGAATTACCGGGAC+CGG - chr7_3:79451618-79451637 None:intergenic 40.0%
! GTCCCGGTAATTCTCAATTT+TGG + chr7_3:79451618-79451637 Msa1127770:intron 40.0%
CGAACGCTTATAACTTAAGC+GGG - chr7_3:79451779-79451798 None:intergenic 40.0%
TGATGATCCAAGAGATGTGA+AGG + chr7_3:79451840-79451859 Msa1127770:CDS 40.0%
ATAGCATCTGCCACCAAATA+CGG + chr7_3:79451895-79451914 Msa1127770:CDS 40.0%
CTGTCTCAATCGCCAAAAAA+AGG - chr7_3:79451960-79451979 None:intergenic 40.0%
!!! AAATTTTTTCCCAAGGGTGC+TGG + chr7_3:79452092-79452111 Msa1127770:three_prime_UTR 40.0%
TATACACTTCCACTGTACAG+AGG - chr7_3:79452145-79452164 None:intergenic 40.0%
GGACAAGTGTGACATACACA+TGG - chr7_3:79451015-79451034 None:intergenic 45.0%
TTCACTCCAACAACACTCAC+CGG - chr7_3:79451203-79451222 None:intergenic 45.0%
AGGAAAGTAGTTTGGGAGGT+AGG + chr7_3:79451261-79451280 Msa1127770:CDS 45.0%
! GAGAGAGTGATCAGAGTACT+GGG + chr7_3:79451408-79451427 Msa1127770:CDS 45.0%
!! AGAGAGTGATCAGAGTACTG+GGG + chr7_3:79451409-79451428 Msa1127770:CDS 45.0%
GTGATTACTAGGCCTAAAGG+TGG + chr7_3:79451437-79451456 Msa1127770:CDS 45.0%
!!! CTGGATTTTCGGGTATGTGA+TGG + chr7_3:79452111-79452130 Msa1127770:three_prime_UTR 45.0%
! GTAGCTTTTCCTCTGTACAG+TGG + chr7_3:79452133-79452152 Msa1127770:three_prime_UTR 45.0%
GGACAAGTGTGACATACACA+TGG - chr7_3:79451015-79451034 None:intergenic 45.0%
TTCACTCCAACAACACTCAC+CGG - chr7_3:79451203-79451222 None:intergenic 45.0%
AGGAAAGTAGTTTGGGAGGT+AGG + chr7_3:79451261-79451280 Msa1127770:CDS 45.0%
! GAGAGAGTGATCAGAGTACT+GGG + chr7_3:79451408-79451427 Msa1127770:CDS 45.0%
!! AGAGAGTGATCAGAGTACTG+GGG + chr7_3:79451409-79451428 Msa1127770:CDS 45.0%
GTGATTACTAGGCCTAAAGG+TGG + chr7_3:79451437-79451456 Msa1127770:CDS 45.0%
!!! CTGGATTTTCGGGTATGTGA+TGG + chr7_3:79452111-79452130 Msa1127770:three_prime_UTR 45.0%
! GTAGCTTTTCCTCTGTACAG+TGG + chr7_3:79452133-79452152 Msa1127770:three_prime_UTR 45.0%
! GATGGTGGTGATGAAGCAGA+TGG + chr7_3:79451053-79451072 Msa1127770:CDS 50.0%
! AAGACGGAGGAGTTTGGTTC+CGG + chr7_3:79451181-79451200 Msa1127770:CDS 50.0%
! TTGGTTCCGGTGAGTGTTGT+TGG + chr7_3:79451194-79451213 Msa1127770:CDS 50.0%
GTTTGGGAGGTAGGAGAAGA+AGG + chr7_3:79451270-79451289 Msa1127770:CDS 50.0%
GTAGGAGAAGAAGGAGGAGA+AGG + chr7_3:79451279-79451298 Msa1127770:CDS 50.0%
GGAGAGAGTGATCAGAGTAC+TGG + chr7_3:79451407-79451426 Msa1127770:CDS 50.0%
!! TGATCAGAGTACTGGGGTGA+TGG + chr7_3:79451415-79451434 Msa1127770:CDS 50.0%
! CTGGGGTGATGGTGATTACT+AGG + chr7_3:79451426-79451445 Msa1127770:CDS 50.0%
CTAGGCCTAAAGGTGGGAAT+AGG + chr7_3:79451444-79451463 Msa1127770:CDS 50.0%
AGTCGTGCCTTCACATCTCT+TGG - chr7_3:79451850-79451869 None:intergenic 50.0%
! TGAAGGCACGACTCAAAGTG+TGG + chr7_3:79451857-79451876 Msa1127770:CDS 50.0%
! GAAGGCACGACTCAAAGTGT+GGG + chr7_3:79451858-79451877 Msa1127770:CDS 50.0%
GTGTCATGAGCCGTATTTGG+TGG - chr7_3:79451908-79451927 None:intergenic 50.0%
! TGGGTGTCATGAGCCGTATT+TGG - chr7_3:79451911-79451930 None:intergenic 50.0%
!!! TCCCAAGGGTGCTGGATTTT+CGG + chr7_3:79452100-79452119 Msa1127770:three_prime_UTR 50.0%
! GATGGTGGTGATGAAGCAGA+TGG + chr7_3:79451053-79451072 Msa1127770:CDS 50.0%
! AAGACGGAGGAGTTTGGTTC+CGG + chr7_3:79451181-79451200 Msa1127770:CDS 50.0%
! TTGGTTCCGGTGAGTGTTGT+TGG + chr7_3:79451194-79451213 Msa1127770:CDS 50.0%
GTTTGGGAGGTAGGAGAAGA+AGG + chr7_3:79451270-79451289 Msa1127770:CDS 50.0%
GTAGGAGAAGAAGGAGGAGA+AGG + chr7_3:79451279-79451298 Msa1127770:CDS 50.0%
GGAGAGAGTGATCAGAGTAC+TGG + chr7_3:79451407-79451426 Msa1127770:CDS 50.0%
!! TGATCAGAGTACTGGGGTGA+TGG + chr7_3:79451415-79451434 Msa1127770:CDS 50.0%
! CTGGGGTGATGGTGATTACT+AGG + chr7_3:79451426-79451445 Msa1127770:CDS 50.0%
CTAGGCCTAAAGGTGGGAAT+AGG + chr7_3:79451444-79451463 Msa1127770:CDS 50.0%
AGTCGTGCCTTCACATCTCT+TGG - chr7_3:79451850-79451869 None:intergenic 50.0%
! TGAAGGCACGACTCAAAGTG+TGG + chr7_3:79451857-79451876 Msa1127770:CDS 50.0%
! GAAGGCACGACTCAAAGTGT+GGG + chr7_3:79451858-79451877 Msa1127770:CDS 50.0%
GTGTCATGAGCCGTATTTGG+TGG - chr7_3:79451908-79451927 None:intergenic 50.0%
! TGGGTGTCATGAGCCGTATT+TGG - chr7_3:79451911-79451930 None:intergenic 50.0%
!!! TCCCAAGGGTGCTGGATTTT+CGG + chr7_3:79452100-79452119 Msa1127770:three_prime_UTR 50.0%
CTACAACCAGGGTTGTCCTC+TGG + chr7_3:79451110-79451129 Msa1127770:CDS 55.0%
TACCGGTGACACCACCAAGA+CGG + chr7_3:79451165-79451184 Msa1127770:CDS 55.0%
ACCACCAAGACGGAGGAGTT+TGG + chr7_3:79451175-79451194 Msa1127770:CDS 55.0%
ACCAAACTCCTCCGTCTTGG+TGG - chr7_3:79451179-79451198 None:intergenic 55.0%
GGAACCAAACTCCTCCGTCT+TGG - chr7_3:79451182-79451201 None:intergenic 55.0%
TGGGAGGTAGGAGAAGAAGG+AGG + chr7_3:79451273-79451292 Msa1127770:CDS 55.0%
AATTGGCGAATCTCCGGTCC+CGG + chr7_3:79451602-79451621 Msa1127770:CDS 55.0%
ACGACTCAAAGTGTGGGCAC+AGG + chr7_3:79451864-79451883 Msa1127770:CDS 55.0%
CCCGAAAATCCAGCACCCTT+GGG - chr7_3:79452104-79452123 None:intergenic 55.0%
!!! CCCAAGGGTGCTGGATTTTC+GGG + chr7_3:79452101-79452120 Msa1127770:three_prime_UTR 55.0%
ACCCGAAAATCCAGCACCCT+TGG - chr7_3:79452105-79452124 None:intergenic 55.0%
CTACAACCAGGGTTGTCCTC+TGG + chr7_3:79451110-79451129 Msa1127770:CDS 55.0%
TACCGGTGACACCACCAAGA+CGG + chr7_3:79451165-79451184 Msa1127770:CDS 55.0%
ACCACCAAGACGGAGGAGTT+TGG + chr7_3:79451175-79451194 Msa1127770:CDS 55.0%
ACCAAACTCCTCCGTCTTGG+TGG - chr7_3:79451179-79451198 None:intergenic 55.0%
GGAACCAAACTCCTCCGTCT+TGG - chr7_3:79451182-79451201 None:intergenic 55.0%
TGGGAGGTAGGAGAAGAAGG+AGG + chr7_3:79451273-79451292 Msa1127770:CDS 55.0%
AATTGGCGAATCTCCGGTCC+CGG + chr7_3:79451602-79451621 Msa1127770:CDS 55.0%
ACGACTCAAAGTGTGGGCAC+AGG + chr7_3:79451864-79451883 Msa1127770:CDS 55.0%
CCCGAAAATCCAGCACCCTT+GGG - chr7_3:79452104-79452123 None:intergenic 55.0%
!!! CCCAAGGGTGCTGGATTTTC+GGG + chr7_3:79452101-79452120 Msa1127770:three_prime_UTR 55.0%
ACCCGAAAATCCAGCACCCT+TGG - chr7_3:79452105-79452124 None:intergenic 55.0%
TCAGAGCCAGAGGACAACCC+TGG - chr7_3:79451119-79451138 None:intergenic 60.0%
!! CTCCGTCTTGGTGGTGTCAC+CGG - chr7_3:79451170-79451189 None:intergenic 60.0%
TCAGAGCCAGAGGACAACCC+TGG - chr7_3:79451119-79451138 None:intergenic 60.0%
!! CTCCGTCTTGGTGGTGTCAC+CGG - chr7_3:79451170-79451189 None:intergenic 60.0%
CGGTGACACCACCAAGACGG+AGG + chr7_3:79451168-79451187 Msa1127770:CDS 65.0%
CGGTGACACCACCAAGACGG+AGG + chr7_3:79451168-79451187 Msa1127770:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 79450636 79452215 79450636 ID=Msa1127770;Name=Msa1127770
chr7_3 mRNA 79450636 79452215 79450636 ID=Msa1127770-mRNA-1;Parent=Msa1127770;Name=Msa1127770-mRNA-1;_AED=0.05;_eAED=0.05;_QI=204|1|1|1|1|1|2|291|289
chr7_3 exon 79450636 79451623 79450636 ID=Msa1127770-mRNA-1:exon:22462;Parent=Msa1127770-mRNA-1
chr7_3 exon 79451839 79452215 79451839 ID=Msa1127770-mRNA-1:exon:22463;Parent=Msa1127770-mRNA-1
chr7_3 five_prime_UTR 79450636 79450839 79450636 ID=Msa1127770-mRNA-1:five_prime_utr;Parent=Msa1127770-mRNA-1
chr7_3 CDS 79450840 79451623 79450840 ID=Msa1127770-mRNA-1:cds;Parent=Msa1127770-mRNA-1
chr7_3 CDS 79451839 79451924 79451839 ID=Msa1127770-mRNA-1:cds;Parent=Msa1127770-mRNA-1
chr7_3 three_prime_UTR 79451925 79452215 79451925 ID=Msa1127770-mRNA-1:three_prime_utr;Parent=Msa1127770-mRNA-1
Gene Sequence

>Msa1127770

ATGGCTTCAGATGAGACCATGATCACAATTCAAGATGAAGACTTTGAAGAAGATGATGATGATTATATTAATGATGGGTTTGATCATCATCATAATCAAAATCACCATAACTTGTCAAGGCTTTCAGTTTGTACAAACAGCACTATATGTGATGATGTTGATAATCTAGCTTCCATGTGTATGTCACACTTGTCCATTGAAAGTTTTGAAGCTGATGGTGGTGATGAAGCAGATGGTGAATTTTCTGCTGATGGAAAAGATGATCAGTTACTACAACCAGGGTTGTCCTCTGGCTCTGAAAATGAATCAGGTAGTTGTTATTCGTTACCGGTGACACCACCAAGACGGAGGAGTTTGGTTCCGGTGAGTGTTGTTGGAGTGAAAGATTATGCAAGTGAGAATGAAGCAAGAAAAGAAACAAAGGAAAGTAGTTTGGGAGGTAGGAGAAGAAGGAGGAGAAGGAGAATGAGAAGTGTGTTTGAAAGGGGAAATAGTTGGGAGAATTTATGGGATCAGAAGAAGAAAATGATGAAAGAGAAAGAGAAATTAGAGAATGGTGTGAATAGTGGAGAGAGTGATCAGAGTACTGGGGTGATGGTGATTACTAGGCCTAAAGGTGGGAATAGGAGTTTGTGTATGGATTTGGAAGAAGTTAAAGCTTGTAGAGATCTTGGATTTGAGTTGGAACATGAAAGAATTTCTGCTGTTTCTTTCTCTAATTCAACACTTGATACTAGTAGTGGTGGTAATTCACCTATTGCTAATTGGCGAATCTCCGGTCCCGGTGATGATCCAAGAGATGTGAAGGCACGACTCAAAGTGTGGGCACAGGCAGTAGCAATAGCATCTGCCACCAAATACGGCTCATGA

Protein sequence

>Msa1127770

MASDETMITIQDEDFEEDDDDYINDGFDHHHNQNHHNLSRLSVCTNSTICDDVDNLASMCMSHLSIESFEADGGDEADGEFSADGKDDQLLQPGLSSGSENESGSCYSLPVTPPRRRSLVPVSVVGVKDYASENEARKETKESSLGGRRRRRRRRMRSVFERGNSWENLWDQKKKMMKEKEKLENGVNSGESDQSTGVMVITRPKGGNRSLCMDLEEVKACRDLGFELEHERISAVSFSNSTLDTSSGGNSPIANWRISGPGDDPRDVKARLKVWAQAVAIASATKYGS*