Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0715680 | AES94809.1 | 92.857 | 266 | 15 | 2 | 1 | 265 | 1 | 263 | 1.73e-168 | 476 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0715680 | sp|Q7Y0D4|TR164_ORYSJ | 74.020 | 204 | 52 | 1 | 63 | 265 | 59 | 262 | 1.49e-109 | 320 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0715680 | G7K9G7 | 92.857 | 266 | 15 | 2 | 1 | 265 | 1 | 263 | 8.28e-169 | 476 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0629440 | Msa0715680 | -0.803333 | 3.664551e-49 | -8.615850e-47 |
| Msa0715680 | Msa0801360 | 0.810833 | 9.467649e-51 | -8.615850e-47 |
| Msa0715680 | Msa0839830 | 0.806401 | 8.375859e-50 | -8.615850e-47 |
| Msa0715680 | Msa0877890 | 0.800075 | 1.708178e-48 | -8.615850e-47 |
| Msa0715680 | Msa0999590 | 0.802235 | 6.176856e-49 | -8.615850e-47 |
| Msa0715680 | Msa1054410 | 0.800931 | 1.143021e-48 | -8.615850e-47 |
| Msa0715680 | Msa1141250 | -0.816330 | 5.847595e-52 | -8.615850e-47 |
| Msa0715680 | Msa1241820 | 0.806518 | 7.910644e-50 | -8.615850e-47 |
| Msa0715680 | Msa1313050 | 0.818425 | 1.973116e-52 | -8.615850e-47 |
| Msa0715680 | Msa1424510 | 0.802568 | 5.274947e-49 | -8.615850e-47 |
| Msa0154240 | Msa0715680 | 0.801265 | 9.768901e-49 | -8.615850e-47 |
| Msa0198440 | Msa0715680 | 0.806594 | 7.625451e-50 | -8.615850e-47 |
| Msa0224370 | Msa0715680 | 0.800294 | 1.541722e-48 | -8.615850e-47 |
| Msa0225880 | Msa0715680 | 0.803623 | 3.191352e-49 | -8.615850e-47 |
| Msa0240780 | Msa0715680 | 0.805997 | 1.018491e-49 | -8.615850e-47 |
| Msa0260470 | Msa0715680 | 0.821799 | 3.331042e-53 | -8.615850e-47 |
| Msa0278670 | Msa0715680 | 0.806576 | 7.691073e-50 | -8.615850e-47 |
| Msa0304110 | Msa0715680 | 0.811753 | 5.980408e-51 | -8.615850e-47 |
| Msa0341190 | Msa0715680 | 0.818744 | 1.670634e-52 | -8.615850e-47 |
| Msa0540070 | Msa0715680 | 0.802818 | 4.683294e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0715680 | MtrunA17_Chr5g0403061 | 92.105 | 266 | 15 | 3 | 1 | 265 | 28 | 288 | 3.86e-168 | 466 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0715680 | AT4G37200.1 | 62.835 | 261 | 91 | 2 | 11 | 265 | 1 | 261 | 3.06e-109 | 316 |
Find 77 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGCTAAGGTGTGGAATTT+AGG | 0.147344 | 5_1:+8769689 | None:intergenic |
| TAACAATTGCCATTGATATT+TGG | 0.190847 | 5_1:+8767611 | None:intergenic |
| TGCTTCTACTTTAGCAGCTT+TGG | 0.217157 | 5_1:-8769407 | Msa0715680:CDS |
| GTTATCTAACCATGACTTCT+TGG | 0.244316 | 5_1:+8767752 | None:intergenic |
| GTATTTGCTAGATTGGATTT+TGG | 0.258034 | 5_1:-8769376 | Msa0715680:CDS |
| AACAAATATCTTTGGTTGCT+TGG | 0.271563 | 5_1:+8769842 | None:intergenic |
| GCTTCTACTTTAGCAGCTTT+GGG | 0.291905 | 5_1:-8769406 | Msa0715680:CDS |
| TTTAGATCCTAATCTATAAC+AGG | 0.320141 | 5_1:+8767635 | None:intergenic |
| ATCAGAAATTGCTGCTTTAG+TGG | 0.329088 | 5_1:-8767452 | Msa0715680:three_prime_UTR |
| GTGCCTCATGCACGTGTTGC+GGG | 0.336548 | 5_1:-8767821 | Msa0715680:CDS |
| GAAGGCATGGTTGGAATCTA+TGG | 0.343193 | 5_1:+8769771 | None:intergenic |
| AGGCTAAGGTGTGGAATTTA+GGG | 0.350250 | 5_1:+8769690 | None:intergenic |
| GTGTTCAAAACAAATATCTT+TGG | 0.351735 | 5_1:+8769834 | None:intergenic |
| GTACAAGCCTGTTATAGATT+AGG | 0.373717 | 5_1:-8767642 | Msa0715680:three_prime_UTR |
| CAGATTGGTGTGAGGTTTGT+AGG | 0.391441 | 5_1:-8768225 | Msa0715680:CDS |
| CTTCATTCCCTTCTTTATCA+AGG | 0.396426 | 5_1:+8767921 | None:intergenic |
| AGTTCAGCCGTTGATTCTAA+TGG | 0.408154 | 5_1:-8769475 | Msa0715680:CDS |
| TGTTGCATTGCCTTATGAAC+AGG | 0.414445 | 5_1:-8769329 | Msa0715680:intron |
| AATGAAGAGGGCAATGTAGT+AGG | 0.426207 | 5_1:-8767905 | Msa0715680:CDS |
| TTTGCTTTCCTTGATAAAGA+AGG | 0.436812 | 5_1:-8767929 | Msa0715680:CDS |
| TTGTTCCAGGCTCTTTCGAA+TGG | 0.436825 | 5_1:-8768274 | Msa0715680:intron |
| TTCTTATTAGCGGTGGCAGT+TGG | 0.452726 | 5_1:-8769907 | None:intergenic |
| GTTGAGAAAGTTGAAGATGA+AGG | 0.461660 | 5_1:+8769753 | None:intergenic |
| ACGGTGGTGAGGAGGATATA+AGG | 0.462252 | 5_1:+8769724 | None:intergenic |
| GAGCAAGAGCTTGACGAATT+CGG | 0.464861 | 5_1:-8767971 | Msa0715680:CDS |
| GTCAAGGTTTGGATTTGAGC+AGG | 0.468359 | 5_1:+8769670 | None:intergenic |
| GACTAAATTCACGAAACTCT+TGG | 0.472756 | 5_1:-8767478 | Msa0715680:three_prime_UTR |
| CTTGACGAATTCGGTGTTGA+GGG | 0.480016 | 5_1:-8767962 | Msa0715680:CDS |
| TTCTAGTGCTGAAGCAAGAA+AGG | 0.481673 | 5_1:-8767792 | Msa0715680:CDS |
| ATATCTTTACTTGGCAATTG+AGG | 0.489525 | 5_1:+8769448 | None:intergenic |
| TTTCTGTTGATATCTTTACT+TGG | 0.491430 | 5_1:+8769439 | None:intergenic |
| TGTTCCAGGCTCTTTCGAAT+GGG | 0.496536 | 5_1:-8768273 | Msa0715680:intron |
| GTTGAAGATGAAGGCATGGT+TGG | 0.497909 | 5_1:+8769762 | None:intergenic |
| CGTCTATCTTTAAATCCAAT+CGG | 0.500356 | 5_1:-8769797 | Msa0715680:CDS |
| TTGCTTTCCTTGATAAAGAA+GGG | 0.507919 | 5_1:-8767928 | Msa0715680:CDS |
| GAGTTTCGTGAATTTAGTCT+TGG | 0.508792 | 5_1:+8767482 | None:intergenic |
| AAGATAGACGAGCCATCCAC+GGG | 0.512782 | 5_1:+8769810 | None:intergenic |
| GATCTAAAACCAAATATCAA+TGG | 0.515813 | 5_1:-8767620 | Msa0715680:three_prime_UTR |
| GTTTGGATTTGAGCAGGCTA+AGG | 0.521535 | 5_1:+8769676 | None:intergenic |
| TATCTTTGGTTGCTTGGTGA+AGG | 0.526818 | 5_1:+8769848 | None:intergenic |
| GGTGCCTCATGCACGTGTTG+CGG | 0.528194 | 5_1:-8767822 | Msa0715680:CDS |
| TGGAATCTATGGAGACCGAT+TGG | 0.546327 | 5_1:+8769782 | None:intergenic |
| AGATTGGTGTGAGGTTTGTA+GGG | 0.549706 | 5_1:-8768224 | Msa0715680:CDS |
| TTCGTGAATTTAGTCTTGGA+TGG | 0.555578 | 5_1:+8767486 | None:intergenic |
| GAACTTTGTGATGTTGAATG+TGG | 0.557978 | 5_1:-8768008 | Msa0715680:CDS |
| AAAGATAGACGAGCCATCCA+CGG | 0.565433 | 5_1:+8769809 | None:intergenic |
| GTTGTTGATCCAAGAAGTCA+TGG | 0.566748 | 5_1:-8767761 | Msa0715680:CDS |
| GAAGGAAGTAGCAGTAAGCA+AGG | 0.575255 | 5_1:+8769866 | None:intergenic |
| ATCAACGGCTGAACTTGTCG+TGG | 0.587303 | 5_1:+8769483 | None:intergenic |
| GGTTTACTACTACTAGTGCT+AGG | 0.596160 | 5_1:+8769505 | None:intergenic |
| TTGATGCGACGGTGGTGAGG+AGG | 0.596718 | 5_1:+8769716 | None:intergenic |
| ATTTAGGGAATTTGATGCGA+CGG | 0.597033 | 5_1:+8769705 | None:intergenic |
| CCAGCCTCAGGAAATAAAAG+TGG | 0.602421 | 5_1:-8769536 | Msa0715680:intron |
| TCAACGGCTGAACTTGTCGT+GGG | 0.603162 | 5_1:+8769484 | None:intergenic |
| GCTTGACGAATTCGGTGTTG+AGG | 0.604024 | 5_1:-8767963 | Msa0715680:CDS |
| AGGAAGACCATTAGAATCAA+CGG | 0.609450 | 5_1:+8769468 | None:intergenic |
| GCATAGAACTCCACGACAGT+AGG | 0.611746 | 5_1:+8768247 | None:intergenic |
| GATAAAGAAGGGAATGAAGA+GGG | 0.615664 | 5_1:-8767917 | Msa0715680:CDS |
| GCCTCAGGAAATAAAAGTGG+TGG | 0.615896 | 5_1:-8769533 | Msa0715680:CDS |
| GAATGGGAAGCCTACTGTCG+TGG | 0.616524 | 5_1:-8768257 | Msa0715680:CDS |
| GATTTGAGCAGGCTAAGGTG+TGG | 0.620223 | 5_1:+8769681 | None:intergenic |
| AATTTGATGCGACGGTGGTG+AGG | 0.624996 | 5_1:+8769713 | None:intergenic |
| TGACCCGCAACACGTGCATG+AGG | 0.635995 | 5_1:+8767818 | None:intergenic |
| TAGGGAATTTGATGCGACGG+TGG | 0.637561 | 5_1:+8769708 | None:intergenic |
| TGATAAAGAAGGGAATGAAG+AGG | 0.637785 | 5_1:-8767918 | Msa0715680:CDS |
| GAAAGTTGAAGATGAAGGCA+TGG | 0.638865 | 5_1:+8769758 | None:intergenic |
| TTATCAAGGAAAGCAAAGTG+TGG | 0.640685 | 5_1:+8767935 | None:intergenic |
| GTTCTATGCAGATTGGTGTG+AGG | 0.642857 | 5_1:-8768233 | Msa0715680:CDS |
| TCGTGGAGTTCTATGCAGAT+TGG | 0.649863 | 5_1:-8768240 | Msa0715680:CDS |
| AATGTAGATGCGCTTGCTCG+TGG | 0.651571 | 5_1:-8767854 | Msa0715680:CDS |
| TAACACTACCTCAACAACAC+CGG | 0.653114 | 5_1:-8769639 | Msa0715680:intron |
| GCTTGCTCGTGGTGAAACAT+CGG | 0.677054 | 5_1:-8767843 | Msa0715680:CDS |
| GAATGTGGATAACACGAAGT+GGG | 0.697170 | 5_1:-8767993 | Msa0715680:CDS |
| TGAATGTGGATAACACGAAG+TGG | 0.714246 | 5_1:-8767994 | Msa0715680:CDS |
| GATAGACGAGCCATCCACGG+GGG | 0.736290 | 5_1:+8769812 | None:intergenic |
| AGATAGACGAGCCATCCACG+GGG | 0.746250 | 5_1:+8769811 | None:intergenic |
| ATAAACATTGAAGTGCACAG+AGG | 0.787542 | 5_1:+8767564 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGATTAATTAGTAATAA+TGG | + | chr5_1:8767729-8767748 | None:intergenic | 10.0% |
| !! | TTGATAAAATAAAGTCAAAT+TGG | - | chr5_1:8768129-8768148 | Msa0715680:intron | 15.0% |
| !! | TATAAGGTGAAAATAATTTA+TGG | - | chr5_1:8768209-8768228 | Msa0715680:CDS | 15.0% |
| !!! | TTTTTCTTATACTTCTATAT+CGG | + | chr5_1:8768431-8768450 | None:intergenic | 15.0% |
| !!! | ATTAATTTTCTCTCAAAATA+AGG | + | chr5_1:8769198-8769217 | None:intergenic | 15.0% |
| !!! | TTGATATAGTTTATGATTTT+CGG | - | chr5_1:8769238-8769257 | Msa0715680:intron | 15.0% |
| !!! | GAAATGTTTGTTTTTTTTAC+CGG | + | chr5_1:8767707-8767726 | None:intergenic | 20.0% |
| !!! | CATATAAGTTATAACTTGTT+TGG | - | chr5_1:8768049-8768068 | Msa0715680:intron | 20.0% |
| !!! | TTATAACTTGTTTGGATTAA+CGG | - | chr5_1:8768057-8768076 | Msa0715680:intron | 20.0% |
| !! | TTGACAGAGTAAAATAATAA+TGG | - | chr5_1:8768623-8768642 | Msa0715680:intron | 20.0% |
| !! | AAAAAAAACCTCAAATTGTT+AGG | + | chr5_1:8768940-8768959 | None:intergenic | 20.0% |
| !! | AATTACCTACACTTTATAAA+AGG | - | chr5_1:8769215-8769234 | Msa0715680:intron | 20.0% |
| ! | GTGTTCAAAACAAATATCTT+TGG | + | chr5_1:8767493-8767512 | None:intergenic | 25.0% |
| ! | TTTCTGTTGATATCTTTACT+TGG | + | chr5_1:8767888-8767907 | None:intergenic | 25.0% |
| ! | AATAGTGTTAAGTTAAGAGT+GGG | + | chr5_1:8768027-8768046 | None:intergenic | 25.0% |
| ! | AAATAGTGTTAAGTTAAGAG+TGG | + | chr5_1:8768028-8768047 | None:intergenic | 25.0% |
| ! | CATAATTCATGAGCAATAAA+CGG | + | chr5_1:8768579-8768598 | None:intergenic | 25.0% |
| ! | GAAGAAGATAAAATGTTGTT+AGG | - | chr5_1:8768694-8768713 | Msa0715680:intron | 25.0% |
| !! | TCAAAATAAGGTATCAAAAG+AGG | + | chr5_1:8769186-8769205 | None:intergenic | 25.0% |
| !! | ATCAACCTTTTATAAAGTGT+AGG | + | chr5_1:8769223-8769242 | None:intergenic | 25.0% |
| ! | TTTAGATCCTAATCTATAAC+AGG | + | chr5_1:8769692-8769711 | None:intergenic | 25.0% |
| !! | GATCTAAAACCAAATATCAA+TGG | - | chr5_1:8769704-8769723 | Msa0715680:CDS | 25.0% |
| ! | TAACAATTGCCATTGATATT+TGG | + | chr5_1:8769716-8769735 | None:intergenic | 25.0% |
| AACAAATATCTTTGGTTGCT+TGG | + | chr5_1:8767485-8767504 | None:intergenic | 30.0% | |
| CGTCTATCTTTAAATCCAAT+CGG | - | chr5_1:8767527-8767546 | Msa0715680:three_prime_UTR | 30.0% | |
| !! | TTATCTTTTTCGTCAAGGTT+TGG | + | chr5_1:8767668-8767687 | None:intergenic | 30.0% |
| !! | TAGTGTTATCTTTTTCGTCA+AGG | + | chr5_1:8767673-8767692 | None:intergenic | 30.0% |
| ATATCTTTACTTGGCAATTG+AGG | + | chr5_1:8767879-8767898 | None:intergenic | 30.0% | |
| !! | ACTTTTCGTATTTGCTAGAT+TGG | - | chr5_1:8767941-8767960 | Msa0715680:CDS | 30.0% |
| !! | GTATTTGCTAGATTGGATTT+TGG | - | chr5_1:8767948-8767967 | Msa0715680:CDS | 30.0% |
| ATAGTGTTAAGTTAAGAGTG+GGG | + | chr5_1:8768026-8768045 | None:intergenic | 30.0% | |
| CTGAAGGACTTATTGATATA+AGG | - | chr5_1:8768193-8768212 | Msa0715680:CDS | 30.0% | |
| ACAACTTATGATATGTCCAT+AGG | + | chr5_1:8768228-8768247 | None:intergenic | 30.0% | |
| CGTTTATTGCTCATGAATTA+TGG | - | chr5_1:8768577-8768596 | Msa0715680:intron | 30.0% | |
| ATGCATGTAATGATGAAAAG+AGG | - | chr5_1:8768657-8768676 | Msa0715680:intron | 30.0% | |
| TGCATGTAATGATGAAAAGA+GGG | - | chr5_1:8768658-8768677 | Msa0715680:intron | 30.0% | |
| ! | CCAACTAATGTTCTAAATAG+GGG | + | chr5_1:8768897-8768916 | None:intergenic | 30.0% |
| ! | CCCAACTAATGTTCTAAATA+GGG | + | chr5_1:8768898-8768917 | None:intergenic | 30.0% |
| ! | CCCTATTTAGAACATTAGTT+GGG | - | chr5_1:8768895-8768914 | Msa0715680:intron | 30.0% |
| AACCTCAAATTGTTAGGTAT+CGG | + | chr5_1:8768934-8768953 | None:intergenic | 30.0% | |
| TCTTCTTGAAGAACAATTTG+AGG | - | chr5_1:8768959-8768978 | Msa0715680:intron | 30.0% | |
| ! | TTCTGATAGTGTTTGTACTT+TGG | - | chr5_1:8769014-8769033 | Msa0715680:intron | 30.0% |
| !! | TAGTGTTTGTACTTTGGTTT+TGG | - | chr5_1:8769020-8769039 | Msa0715680:intron | 30.0% |
| ! | ACCATTTTACTTCTCAAAAC+AGG | - | chr5_1:8769285-8769304 | Msa0715680:intron | 30.0% |
| !!! | TCCTGTTTTGAGAAGTAAAA+TGG | + | chr5_1:8769289-8769308 | None:intergenic | 30.0% |
| TTTGCTTTCCTTGATAAAGA+AGG | - | chr5_1:8769395-8769414 | Msa0715680:CDS | 30.0% | |
| TTGCTTTCCTTGATAAAGAA+GGG | - | chr5_1:8769396-8769415 | Msa0715680:CDS | 30.0% | |
| GTTGAGAAAGTTGAAGATGA+AGG | + | chr5_1:8767574-8767593 | None:intergenic | 35.0% | |
| ATTTAGGGAATTTGATGCGA+CGG | + | chr5_1:8767622-8767641 | None:intergenic | 35.0% | |
| !!! | TTTTTTTACCGGTGTTGTTG+AGG | + | chr5_1:8767696-8767715 | None:intergenic | 35.0% |
| ! | TAATGATTTTTACCAGCCTC+AGG | - | chr5_1:8767776-8767795 | Msa0715680:CDS | 35.0% |
| AGGAAGACCATTAGAATCAA+CGG | + | chr5_1:8767859-8767878 | None:intergenic | 35.0% | |
| TAGTGTTAAGTTAAGAGTGG+GGG | + | chr5_1:8768025-8768044 | None:intergenic | 35.0% | |
| TCAGATAACCAAATCCAAAC+AGG | - | chr5_1:8768298-8768317 | Msa0715680:intron | 35.0% | |
| ATTGATATAAGCAGCCTGTT+TGG | + | chr5_1:8768315-8768334 | None:intergenic | 35.0% | |
| ! | CAATGCTTTGTGGTTAGTTA+GGG | + | chr5_1:8768728-8768747 | None:intergenic | 35.0% |
| GTTACGACCTTAGAAGATTT+GGG | + | chr5_1:8768777-8768796 | None:intergenic | 35.0% | |
| AGTTACGACCTTAGAAGATT+TGG | + | chr5_1:8768778-8768797 | None:intergenic | 35.0% | |
| ATCCATGTCCTTCATATAAC+TGG | - | chr5_1:8768826-8768845 | Msa0715680:intron | 35.0% | |
| ! | AATGTTCTAAATAGGGGAGT+TGG | + | chr5_1:8768891-8768910 | None:intergenic | 35.0% |
| ! | CCCCTATTTAGAACATTAGT+TGG | - | chr5_1:8768894-8768913 | Msa0715680:intron | 35.0% |
| ! | GCCCAACTAATGTTCTAAAT+AGG | + | chr5_1:8768899-8768918 | None:intergenic | 35.0% |
| TTAGAACATTAGTTGGGCTT+AGG | - | chr5_1:8768901-8768920 | Msa0715680:intron | 35.0% | |
| !!! | AATTGTTAGGTATCGGGTTT+TGG | + | chr5_1:8768927-8768946 | None:intergenic | 35.0% |
| ACCTCAAATTGTTAGGTATC+GGG | + | chr5_1:8768933-8768952 | None:intergenic | 35.0% | |
| ! | TTTTGGATGTTTCTTGTTCC+AGG | - | chr5_1:8769037-8769056 | Msa0715680:intron | 35.0% |
| ! | TGCTCTATTTTGTAGACATC+AGG | + | chr5_1:8769134-8769153 | None:intergenic | 35.0% |
| GAACTTTGTGATGTTGAATG+TGG | - | chr5_1:8769316-8769335 | Msa0715680:intron | 35.0% | |
| TTATCAAGGAAAGCAAAGTG+TGG | + | chr5_1:8769392-8769411 | None:intergenic | 35.0% | |
| CTTCATTCCCTTCTTTATCA+AGG | + | chr5_1:8769406-8769425 | None:intergenic | 35.0% | |
| TGATAAAGAAGGGAATGAAG+AGG | - | chr5_1:8769406-8769425 | Msa0715680:CDS | 35.0% | |
| GATAAAGAAGGGAATGAAGA+GGG | - | chr5_1:8769407-8769426 | Msa0715680:CDS | 35.0% | |
| !! | TTTTCAAGCAAGTACTGTCT+TGG | + | chr5_1:8769452-8769471 | None:intergenic | 35.0% |
| GTTATCTAACCATGACTTCT+TGG | + | chr5_1:8769575-8769594 | None:intergenic | 35.0% | |
| GTACAAGCCTGTTATAGATT+AGG | - | chr5_1:8769682-8769701 | Msa0715680:CDS | 35.0% | |
| ATAAACATTGAAGTGCACAG+AGG | + | chr5_1:8769763-8769782 | None:intergenic | 35.0% | |
| !! | TTCGTGAATTTAGTCTTGGA+TGG | + | chr5_1:8769841-8769860 | None:intergenic | 35.0% |
| GAGTTTCGTGAATTTAGTCT+TGG | + | chr5_1:8769845-8769864 | None:intergenic | 35.0% | |
| GACTAAATTCACGAAACTCT+TGG | - | chr5_1:8769846-8769865 | Msa0715680:five_prime_UTR | 35.0% | |
| !! | ATCAGAAATTGCTGCTTTAG+TGG | - | chr5_1:8769872-8769891 | Msa0715680:five_prime_UTR | 35.0% |
| ! | TATCTTTGGTTGCTTGGTGA+AGG | + | chr5_1:8767479-8767498 | None:intergenic | 40.0% |
| GAAAGTTGAAGATGAAGGCA+TGG | + | chr5_1:8767569-8767588 | None:intergenic | 40.0% | |
| AGGCTAAGGTGTGGAATTTA+GGG | + | chr5_1:8767637-8767656 | None:intergenic | 40.0% | |
| TAACACTACCTCAACAACAC+CGG | - | chr5_1:8767685-8767704 | Msa0715680:three_prime_UTR | 40.0% | |
| !! | ACCACCACTTTTATTTCCTG+AGG | + | chr5_1:8767795-8767814 | None:intergenic | 40.0% |
| GGTTTACTACTACTAGTGCT+AGG | + | chr5_1:8767822-8767841 | None:intergenic | 40.0% | |
| !! | AGTTCAGCCGTTGATTCTAA+TGG | - | chr5_1:8767849-8767868 | Msa0715680:CDS | 40.0% |
| TGCTTCTACTTTAGCAGCTT+TGG | - | chr5_1:8767917-8767936 | Msa0715680:CDS | 40.0% | |
| GCTTCTACTTTAGCAGCTTT+GGG | - | chr5_1:8767918-8767937 | Msa0715680:CDS | 40.0% | |
| TGTTGCATTGCCTTATGAAC+AGG | - | chr5_1:8767995-8768014 | Msa0715680:CDS | 40.0% | |
| AGTGTTAAGTTAAGAGTGGG+GGG | + | chr5_1:8768024-8768043 | None:intergenic | 40.0% | |
| ! | GTTTTACTGAGCTGTTCTGA+AGG | - | chr5_1:8768177-8768196 | Msa0715680:intron | 40.0% |
| ACAAGCACTAGTGCAATTGT+GGG | + | chr5_1:8768264-8768283 | None:intergenic | 40.0% | |
| ATAAGCAGCCTGTTTGGATT+TGG | + | chr5_1:8768309-8768328 | None:intergenic | 40.0% | |
| AATGAGCTGAAGACAACCTA+TGG | - | chr5_1:8768332-8768351 | Msa0715680:intron | 40.0% | |
| CGATCTTTGTTCATGCAGTT+CGG | - | chr5_1:8768512-8768531 | Msa0715680:intron | 40.0% | |
| ! | GCAATGCTTTGTGGTTAGTT+AGG | + | chr5_1:8768729-8768748 | None:intergenic | 40.0% |
| AGAGAAAGTCATTCCTCTGA+AGG | + | chr5_1:8768753-8768772 | None:intergenic | 40.0% | |
| TTCTCTGCCCAAATCTTCTA+AGG | - | chr5_1:8768767-8768786 | Msa0715680:intron | 40.0% | |
| AGGACATGGATAGCAATAGA+GGG | + | chr5_1:8768817-8768836 | None:intergenic | 40.0% | |
| AAGGACATGGATAGCAATAG+AGG | + | chr5_1:8768818-8768837 | None:intergenic | 40.0% | |
| TGCCAGTTATATGAAGGACA+TGG | + | chr5_1:8768831-8768850 | None:intergenic | 40.0% | |
| ACCCGATACCTAACAATTTG+AGG | - | chr5_1:8768929-8768948 | Msa0715680:intron | 40.0% | |
| AGATTGGTGTGAGGTTTGTA+GGG | - | chr5_1:8769100-8769119 | Msa0715680:intron | 40.0% | |
| TGAATGTGGATAACACGAAG+TGG | - | chr5_1:8769330-8769349 | Msa0715680:CDS | 40.0% | |
| GAATGTGGATAACACGAAGT+GGG | - | chr5_1:8769331-8769350 | Msa0715680:CDS | 40.0% | |
| AATGAAGAGGGCAATGTAGT+AGG | - | chr5_1:8769419-8769438 | Msa0715680:CDS | 40.0% | |
| ! | TTCTAGTGCTGAAGCAAGAA+AGG | - | chr5_1:8769532-8769551 | Msa0715680:CDS | 40.0% |
| GTTGTTGATCCAAGAAGTCA+TGG | - | chr5_1:8769563-8769582 | Msa0715680:intron | 40.0% | |
| GAAGGAAGTAGCAGTAAGCA+AGG | + | chr5_1:8767461-8767480 | None:intergenic | 45.0% | |
| !!! | ATTTGTTTTGAACACCCCCG+TGG | - | chr5_1:8767498-8767517 | Msa0715680:three_prime_UTR | 45.0% |
| AAAGATAGACGAGCCATCCA+CGG | + | chr5_1:8767518-8767537 | None:intergenic | 45.0% | |
| TGGAATCTATGGAGACCGAT+TGG | + | chr5_1:8767545-8767564 | None:intergenic | 45.0% | |
| ! | GAAGGCATGGTTGGAATCTA+TGG | + | chr5_1:8767556-8767575 | None:intergenic | 45.0% |
| ! | GTTGAAGATGAAGGCATGGT+TGG | + | chr5_1:8767565-8767584 | None:intergenic | 45.0% |
| CAGGCTAAGGTGTGGAATTT+AGG | + | chr5_1:8767638-8767657 | None:intergenic | 45.0% | |
| GTTTGGATTTGAGCAGGCTA+AGG | + | chr5_1:8767651-8767670 | None:intergenic | 45.0% | |
| GTCAAGGTTTGGATTTGAGC+AGG | + | chr5_1:8767657-8767676 | None:intergenic | 45.0% | |
| !! | CCACTTTTATTTCCTGAGGC+TGG | + | chr5_1:8767791-8767810 | None:intergenic | 45.0% |
| CCAGCCTCAGGAAATAAAAG+TGG | - | chr5_1:8767788-8767807 | Msa0715680:CDS | 45.0% | |
| GCCTCAGGAAATAAAAGTGG+TGG | - | chr5_1:8767791-8767810 | Msa0715680:CDS | 45.0% | |
| GTGTTAAGTTAAGAGTGGGG+GGG | + | chr5_1:8768023-8768042 | None:intergenic | 45.0% | |
| !! | TGCAATTGTGGGAGTGCTTA+TGG | + | chr5_1:8768253-8768272 | None:intergenic | 45.0% |
| CACAAGCACTAGTGCAATTG+TGG | + | chr5_1:8768265-8768284 | None:intergenic | 45.0% | |
| CTACCTCTGCGACTATAGAA+CGG | - | chr5_1:8768545-8768564 | Msa0715680:intron | 45.0% | |
| TCTGAAGGAGCAATGCTTTG+TGG | + | chr5_1:8768738-8768757 | None:intergenic | 45.0% | |
| !! | ACAAAGCATTGCTCCTTCAG+AGG | - | chr5_1:8768737-8768756 | Msa0715680:intron | 45.0% |
| GGACATGGATAGCAATAGAG+GGG | + | chr5_1:8768816-8768835 | None:intergenic | 45.0% | |
| GGGGAATGCCAGTTATATGA+AGG | + | chr5_1:8768837-8768856 | None:intergenic | 45.0% | |
| !! | ACGTGGCTAGTTTGTTAGAG+GGG | + | chr5_1:8768856-8768875 | None:intergenic | 45.0% |
| !! | CACGTGGCTAGTTTGTTAGA+GGG | + | chr5_1:8768857-8768876 | None:intergenic | 45.0% |
| !! | TCACGTGGCTAGTTTGTTAG+AGG | + | chr5_1:8768858-8768877 | None:intergenic | 45.0% |
| GTTGGTTACATTTGCTCACG+TGG | + | chr5_1:8768873-8768892 | None:intergenic | 45.0% | |
| TTGTTCCAGGCTCTTTCGAA+TGG | - | chr5_1:8769050-8769069 | Msa0715680:intron | 45.0% | |
| TGTTCCAGGCTCTTTCGAAT+GGG | - | chr5_1:8769051-8769070 | Msa0715680:intron | 45.0% | |
| TCGTGGAGTTCTATGCAGAT+TGG | - | chr5_1:8769084-8769103 | Msa0715680:intron | 45.0% | |
| GTTCTATGCAGATTGGTGTG+AGG | - | chr5_1:8769091-8769110 | Msa0715680:intron | 45.0% | |
| CAGATTGGTGTGAGGTTTGT+AGG | - | chr5_1:8769099-8769118 | Msa0715680:intron | 45.0% | |
| GAGCAAGAGCTTGACGAATT+CGG | - | chr5_1:8769353-8769372 | Msa0715680:CDS | 45.0% | |
| !! | CTTGACGAATTCGGTGTTGA+GGG | - | chr5_1:8769362-8769381 | Msa0715680:CDS | 45.0% |
| AAGATAGACGAGCCATCCAC+GGG | + | chr5_1:8767517-8767536 | None:intergenic | 50.0% | |
| ACGGTGGTGAGGAGGATATA+AGG | + | chr5_1:8767603-8767622 | None:intergenic | 50.0% | |
| AATTTGATGCGACGGTGGTG+AGG | + | chr5_1:8767614-8767633 | None:intergenic | 50.0% | |
| TAGGGAATTTGATGCGACGG+TGG | + | chr5_1:8767619-8767638 | None:intergenic | 50.0% | |
| GATTTGAGCAGGCTAAGGTG+TGG | + | chr5_1:8767646-8767665 | None:intergenic | 50.0% | |
| TCAACGGCTGAACTTGTCGT+GGG | + | chr5_1:8767843-8767862 | None:intergenic | 50.0% | |
| ATCAACGGCTGAACTTGTCG+TGG | + | chr5_1:8767844-8767863 | None:intergenic | 50.0% | |
| TGTTCATGCAGTTCGGTCAC+TGG | - | chr5_1:8768519-8768538 | Msa0715680:intron | 50.0% | |
| CGTTCTATAGTCGCAGAGGT+AGG | + | chr5_1:8768547-8768566 | None:intergenic | 50.0% | |
| TAGCCGTTCTATAGTCGCAG+AGG | + | chr5_1:8768551-8768570 | None:intergenic | 50.0% | |
| GCATAGAACTCCACGACAGT+AGG | + | chr5_1:8769080-8769099 | None:intergenic | 50.0% | |
| !! | GCTTGACGAATTCGGTGTTG+AGG | - | chr5_1:8769361-8769380 | Msa0715680:CDS | 50.0% |
| AATGTAGATGCGCTTGCTCG+TGG | - | chr5_1:8769470-8769489 | Msa0715680:CDS | 50.0% | |
| GCTTGCTCGTGGTGAAACAT+CGG | - | chr5_1:8769481-8769500 | Msa0715680:CDS | 50.0% | |
| !! | GTTTTGAACACCCCCGTGGA+TGG | - | chr5_1:8767502-8767521 | Msa0715680:three_prime_UTR | 55.0% |
| AGATAGACGAGCCATCCACG+GGG | + | chr5_1:8767516-8767535 | None:intergenic | 55.0% | |
| TGGGGGGGAACCTGTTCATA+AGG | + | chr5_1:8768008-8768027 | None:intergenic | 55.0% | |
| GCTTCCCATTCGAAAGAGCC+TGG | + | chr5_1:8769058-8769077 | None:intergenic | 55.0% | |
| GAATGGGAAGCCTACTGTCG+TGG | - | chr5_1:8769067-8769086 | Msa0715680:intron | 55.0% | |
| GATAGACGAGCCATCCACGG+GGG | + | chr5_1:8767515-8767534 | None:intergenic | 60.0% | |
| TTGATGCGACGGTGGTGAGG+AGG | + | chr5_1:8767611-8767630 | None:intergenic | 60.0% | |
| GGTGCCTCATGCACGTGTTG+CGG | - | chr5_1:8769502-8769521 | Msa0715680:CDS | 60.0% | |
| GTGCCTCATGCACGTGTTGC+GGG | - | chr5_1:8769503-8769522 | Msa0715680:CDS | 60.0% | |
| TGACCCGCAACACGTGCATG+AGG | + | chr5_1:8769509-8769528 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 8767432 | 8769914 | 8767432 | ID=Msa0715680;Name=Msa0715680 |
| chr5_1 | mRNA | 8767432 | 8769914 | 8767432 | ID=Msa0715680-mRNA-1;Parent=Msa0715680;Name=Msa0715680-mRNA-1;_AED=0.07;_eAED=0.07;_QI=89|1|1|1|1|1|4|325|265 |
| chr5_1 | exon | 8767432 | 8768039 | 8767432 | ID=Msa0715680-mRNA-1:exon:3623;Parent=Msa0715680-mRNA-1 |
| chr5_1 | exon | 8768184 | 8768287 | 8768184 | ID=Msa0715680-mRNA-1:exon:3622;Parent=Msa0715680-mRNA-1 |
| chr5_1 | exon | 8769330 | 8769554 | 8769330 | ID=Msa0715680-mRNA-1:exon:3621;Parent=Msa0715680-mRNA-1 |
| chr5_1 | exon | 8769640 | 8769914 | 8769640 | ID=Msa0715680-mRNA-1:exon:3620;Parent=Msa0715680-mRNA-1 |
| chr5_1 | five_prime_UTR | 8769826 | 8769914 | 8769826 | ID=Msa0715680-mRNA-1:five_prime_utr;Parent=Msa0715680-mRNA-1 |
| chr5_1 | CDS | 8769640 | 8769825 | 8769640 | ID=Msa0715680-mRNA-1:cds;Parent=Msa0715680-mRNA-1 |
| chr5_1 | CDS | 8769330 | 8769554 | 8769330 | ID=Msa0715680-mRNA-1:cds;Parent=Msa0715680-mRNA-1 |
| chr5_1 | CDS | 8768184 | 8768287 | 8768184 | ID=Msa0715680-mRNA-1:cds;Parent=Msa0715680-mRNA-1 |
| chr5_1 | CDS | 8767757 | 8768039 | 8767757 | ID=Msa0715680-mRNA-1:cds;Parent=Msa0715680-mRNA-1 |
| chr5_1 | three_prime_UTR | 8767432 | 8767756 | 8767432 | ID=Msa0715680-mRNA-1:three_prime_utr;Parent=Msa0715680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
