AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0715680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0715680 MtrunA17_Chr5g0403061 92.105 266 15 3 1 265 28 288 3.86e-168 466
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0715680 AT4G37200.1 62.835 261 91 2 11 265 1 261 3.06e-109 316

Find 77 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGCTAAGGTGTGGAATTT+AGG 0.147344 5_1:+8769689 None:intergenic
TAACAATTGCCATTGATATT+TGG 0.190847 5_1:+8767611 None:intergenic
TGCTTCTACTTTAGCAGCTT+TGG 0.217157 5_1:-8769407 Msa0715680:CDS
GTTATCTAACCATGACTTCT+TGG 0.244316 5_1:+8767752 None:intergenic
GTATTTGCTAGATTGGATTT+TGG 0.258034 5_1:-8769376 Msa0715680:CDS
AACAAATATCTTTGGTTGCT+TGG 0.271563 5_1:+8769842 None:intergenic
GCTTCTACTTTAGCAGCTTT+GGG 0.291905 5_1:-8769406 Msa0715680:CDS
TTTAGATCCTAATCTATAAC+AGG 0.320141 5_1:+8767635 None:intergenic
ATCAGAAATTGCTGCTTTAG+TGG 0.329088 5_1:-8767452 Msa0715680:three_prime_UTR
GTGCCTCATGCACGTGTTGC+GGG 0.336548 5_1:-8767821 Msa0715680:CDS
GAAGGCATGGTTGGAATCTA+TGG 0.343193 5_1:+8769771 None:intergenic
AGGCTAAGGTGTGGAATTTA+GGG 0.350250 5_1:+8769690 None:intergenic
GTGTTCAAAACAAATATCTT+TGG 0.351735 5_1:+8769834 None:intergenic
GTACAAGCCTGTTATAGATT+AGG 0.373717 5_1:-8767642 Msa0715680:three_prime_UTR
CAGATTGGTGTGAGGTTTGT+AGG 0.391441 5_1:-8768225 Msa0715680:CDS
CTTCATTCCCTTCTTTATCA+AGG 0.396426 5_1:+8767921 None:intergenic
AGTTCAGCCGTTGATTCTAA+TGG 0.408154 5_1:-8769475 Msa0715680:CDS
TGTTGCATTGCCTTATGAAC+AGG 0.414445 5_1:-8769329 Msa0715680:intron
AATGAAGAGGGCAATGTAGT+AGG 0.426207 5_1:-8767905 Msa0715680:CDS
TTTGCTTTCCTTGATAAAGA+AGG 0.436812 5_1:-8767929 Msa0715680:CDS
TTGTTCCAGGCTCTTTCGAA+TGG 0.436825 5_1:-8768274 Msa0715680:intron
TTCTTATTAGCGGTGGCAGT+TGG 0.452726 5_1:-8769907 None:intergenic
GTTGAGAAAGTTGAAGATGA+AGG 0.461660 5_1:+8769753 None:intergenic
ACGGTGGTGAGGAGGATATA+AGG 0.462252 5_1:+8769724 None:intergenic
GAGCAAGAGCTTGACGAATT+CGG 0.464861 5_1:-8767971 Msa0715680:CDS
GTCAAGGTTTGGATTTGAGC+AGG 0.468359 5_1:+8769670 None:intergenic
GACTAAATTCACGAAACTCT+TGG 0.472756 5_1:-8767478 Msa0715680:three_prime_UTR
CTTGACGAATTCGGTGTTGA+GGG 0.480016 5_1:-8767962 Msa0715680:CDS
TTCTAGTGCTGAAGCAAGAA+AGG 0.481673 5_1:-8767792 Msa0715680:CDS
ATATCTTTACTTGGCAATTG+AGG 0.489525 5_1:+8769448 None:intergenic
TTTCTGTTGATATCTTTACT+TGG 0.491430 5_1:+8769439 None:intergenic
TGTTCCAGGCTCTTTCGAAT+GGG 0.496536 5_1:-8768273 Msa0715680:intron
GTTGAAGATGAAGGCATGGT+TGG 0.497909 5_1:+8769762 None:intergenic
CGTCTATCTTTAAATCCAAT+CGG 0.500356 5_1:-8769797 Msa0715680:CDS
TTGCTTTCCTTGATAAAGAA+GGG 0.507919 5_1:-8767928 Msa0715680:CDS
GAGTTTCGTGAATTTAGTCT+TGG 0.508792 5_1:+8767482 None:intergenic
AAGATAGACGAGCCATCCAC+GGG 0.512782 5_1:+8769810 None:intergenic
GATCTAAAACCAAATATCAA+TGG 0.515813 5_1:-8767620 Msa0715680:three_prime_UTR
GTTTGGATTTGAGCAGGCTA+AGG 0.521535 5_1:+8769676 None:intergenic
TATCTTTGGTTGCTTGGTGA+AGG 0.526818 5_1:+8769848 None:intergenic
GGTGCCTCATGCACGTGTTG+CGG 0.528194 5_1:-8767822 Msa0715680:CDS
TGGAATCTATGGAGACCGAT+TGG 0.546327 5_1:+8769782 None:intergenic
AGATTGGTGTGAGGTTTGTA+GGG 0.549706 5_1:-8768224 Msa0715680:CDS
TTCGTGAATTTAGTCTTGGA+TGG 0.555578 5_1:+8767486 None:intergenic
GAACTTTGTGATGTTGAATG+TGG 0.557978 5_1:-8768008 Msa0715680:CDS
AAAGATAGACGAGCCATCCA+CGG 0.565433 5_1:+8769809 None:intergenic
GTTGTTGATCCAAGAAGTCA+TGG 0.566748 5_1:-8767761 Msa0715680:CDS
GAAGGAAGTAGCAGTAAGCA+AGG 0.575255 5_1:+8769866 None:intergenic
ATCAACGGCTGAACTTGTCG+TGG 0.587303 5_1:+8769483 None:intergenic
GGTTTACTACTACTAGTGCT+AGG 0.596160 5_1:+8769505 None:intergenic
TTGATGCGACGGTGGTGAGG+AGG 0.596718 5_1:+8769716 None:intergenic
ATTTAGGGAATTTGATGCGA+CGG 0.597033 5_1:+8769705 None:intergenic
CCAGCCTCAGGAAATAAAAG+TGG 0.602421 5_1:-8769536 Msa0715680:intron
TCAACGGCTGAACTTGTCGT+GGG 0.603162 5_1:+8769484 None:intergenic
GCTTGACGAATTCGGTGTTG+AGG 0.604024 5_1:-8767963 Msa0715680:CDS
AGGAAGACCATTAGAATCAA+CGG 0.609450 5_1:+8769468 None:intergenic
GCATAGAACTCCACGACAGT+AGG 0.611746 5_1:+8768247 None:intergenic
GATAAAGAAGGGAATGAAGA+GGG 0.615664 5_1:-8767917 Msa0715680:CDS
GCCTCAGGAAATAAAAGTGG+TGG 0.615896 5_1:-8769533 Msa0715680:CDS
GAATGGGAAGCCTACTGTCG+TGG 0.616524 5_1:-8768257 Msa0715680:CDS
GATTTGAGCAGGCTAAGGTG+TGG 0.620223 5_1:+8769681 None:intergenic
AATTTGATGCGACGGTGGTG+AGG 0.624996 5_1:+8769713 None:intergenic
TGACCCGCAACACGTGCATG+AGG 0.635995 5_1:+8767818 None:intergenic
TAGGGAATTTGATGCGACGG+TGG 0.637561 5_1:+8769708 None:intergenic
TGATAAAGAAGGGAATGAAG+AGG 0.637785 5_1:-8767918 Msa0715680:CDS
GAAAGTTGAAGATGAAGGCA+TGG 0.638865 5_1:+8769758 None:intergenic
TTATCAAGGAAAGCAAAGTG+TGG 0.640685 5_1:+8767935 None:intergenic
GTTCTATGCAGATTGGTGTG+AGG 0.642857 5_1:-8768233 Msa0715680:CDS
TCGTGGAGTTCTATGCAGAT+TGG 0.649863 5_1:-8768240 Msa0715680:CDS
AATGTAGATGCGCTTGCTCG+TGG 0.651571 5_1:-8767854 Msa0715680:CDS
TAACACTACCTCAACAACAC+CGG 0.653114 5_1:-8769639 Msa0715680:intron
GCTTGCTCGTGGTGAAACAT+CGG 0.677054 5_1:-8767843 Msa0715680:CDS
GAATGTGGATAACACGAAGT+GGG 0.697170 5_1:-8767993 Msa0715680:CDS
TGAATGTGGATAACACGAAG+TGG 0.714246 5_1:-8767994 Msa0715680:CDS
GATAGACGAGCCATCCACGG+GGG 0.736290 5_1:+8769812 None:intergenic
AGATAGACGAGCCATCCACG+GGG 0.746250 5_1:+8769811 None:intergenic
ATAAACATTGAAGTGCACAG+AGG 0.787542 5_1:+8767564 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGATTAATTAGTAATAA+TGG + chr5_1:8767729-8767748 None:intergenic 10.0%
!! TTGATAAAATAAAGTCAAAT+TGG - chr5_1:8768129-8768148 Msa0715680:intron 15.0%
!! TATAAGGTGAAAATAATTTA+TGG - chr5_1:8768209-8768228 Msa0715680:CDS 15.0%
!!! TTTTTCTTATACTTCTATAT+CGG + chr5_1:8768431-8768450 None:intergenic 15.0%
!!! ATTAATTTTCTCTCAAAATA+AGG + chr5_1:8769198-8769217 None:intergenic 15.0%
!!! TTGATATAGTTTATGATTTT+CGG - chr5_1:8769238-8769257 Msa0715680:intron 15.0%
!!! GAAATGTTTGTTTTTTTTAC+CGG + chr5_1:8767707-8767726 None:intergenic 20.0%
!!! CATATAAGTTATAACTTGTT+TGG - chr5_1:8768049-8768068 Msa0715680:intron 20.0%
!!! TTATAACTTGTTTGGATTAA+CGG - chr5_1:8768057-8768076 Msa0715680:intron 20.0%
!! TTGACAGAGTAAAATAATAA+TGG - chr5_1:8768623-8768642 Msa0715680:intron 20.0%
!! AAAAAAAACCTCAAATTGTT+AGG + chr5_1:8768940-8768959 None:intergenic 20.0%
!! AATTACCTACACTTTATAAA+AGG - chr5_1:8769215-8769234 Msa0715680:intron 20.0%
! GTGTTCAAAACAAATATCTT+TGG + chr5_1:8767493-8767512 None:intergenic 25.0%
! TTTCTGTTGATATCTTTACT+TGG + chr5_1:8767888-8767907 None:intergenic 25.0%
! AATAGTGTTAAGTTAAGAGT+GGG + chr5_1:8768027-8768046 None:intergenic 25.0%
! AAATAGTGTTAAGTTAAGAG+TGG + chr5_1:8768028-8768047 None:intergenic 25.0%
! CATAATTCATGAGCAATAAA+CGG + chr5_1:8768579-8768598 None:intergenic 25.0%
! GAAGAAGATAAAATGTTGTT+AGG - chr5_1:8768694-8768713 Msa0715680:intron 25.0%
!! TCAAAATAAGGTATCAAAAG+AGG + chr5_1:8769186-8769205 None:intergenic 25.0%
!! ATCAACCTTTTATAAAGTGT+AGG + chr5_1:8769223-8769242 None:intergenic 25.0%
! TTTAGATCCTAATCTATAAC+AGG + chr5_1:8769692-8769711 None:intergenic 25.0%
!! GATCTAAAACCAAATATCAA+TGG - chr5_1:8769704-8769723 Msa0715680:CDS 25.0%
! TAACAATTGCCATTGATATT+TGG + chr5_1:8769716-8769735 None:intergenic 25.0%
AACAAATATCTTTGGTTGCT+TGG + chr5_1:8767485-8767504 None:intergenic 30.0%
CGTCTATCTTTAAATCCAAT+CGG - chr5_1:8767527-8767546 Msa0715680:three_prime_UTR 30.0%
!! TTATCTTTTTCGTCAAGGTT+TGG + chr5_1:8767668-8767687 None:intergenic 30.0%
!! TAGTGTTATCTTTTTCGTCA+AGG + chr5_1:8767673-8767692 None:intergenic 30.0%
ATATCTTTACTTGGCAATTG+AGG + chr5_1:8767879-8767898 None:intergenic 30.0%
!! ACTTTTCGTATTTGCTAGAT+TGG - chr5_1:8767941-8767960 Msa0715680:CDS 30.0%
!! GTATTTGCTAGATTGGATTT+TGG - chr5_1:8767948-8767967 Msa0715680:CDS 30.0%
ATAGTGTTAAGTTAAGAGTG+GGG + chr5_1:8768026-8768045 None:intergenic 30.0%
CTGAAGGACTTATTGATATA+AGG - chr5_1:8768193-8768212 Msa0715680:CDS 30.0%
ACAACTTATGATATGTCCAT+AGG + chr5_1:8768228-8768247 None:intergenic 30.0%
CGTTTATTGCTCATGAATTA+TGG - chr5_1:8768577-8768596 Msa0715680:intron 30.0%
ATGCATGTAATGATGAAAAG+AGG - chr5_1:8768657-8768676 Msa0715680:intron 30.0%
TGCATGTAATGATGAAAAGA+GGG - chr5_1:8768658-8768677 Msa0715680:intron 30.0%
! CCAACTAATGTTCTAAATAG+GGG + chr5_1:8768897-8768916 None:intergenic 30.0%
! CCCAACTAATGTTCTAAATA+GGG + chr5_1:8768898-8768917 None:intergenic 30.0%
! CCCTATTTAGAACATTAGTT+GGG - chr5_1:8768895-8768914 Msa0715680:intron 30.0%
AACCTCAAATTGTTAGGTAT+CGG + chr5_1:8768934-8768953 None:intergenic 30.0%
TCTTCTTGAAGAACAATTTG+AGG - chr5_1:8768959-8768978 Msa0715680:intron 30.0%
! TTCTGATAGTGTTTGTACTT+TGG - chr5_1:8769014-8769033 Msa0715680:intron 30.0%
!! TAGTGTTTGTACTTTGGTTT+TGG - chr5_1:8769020-8769039 Msa0715680:intron 30.0%
! ACCATTTTACTTCTCAAAAC+AGG - chr5_1:8769285-8769304 Msa0715680:intron 30.0%
!!! TCCTGTTTTGAGAAGTAAAA+TGG + chr5_1:8769289-8769308 None:intergenic 30.0%
TTTGCTTTCCTTGATAAAGA+AGG - chr5_1:8769395-8769414 Msa0715680:CDS 30.0%
TTGCTTTCCTTGATAAAGAA+GGG - chr5_1:8769396-8769415 Msa0715680:CDS 30.0%
GTTGAGAAAGTTGAAGATGA+AGG + chr5_1:8767574-8767593 None:intergenic 35.0%
ATTTAGGGAATTTGATGCGA+CGG + chr5_1:8767622-8767641 None:intergenic 35.0%
!!! TTTTTTTACCGGTGTTGTTG+AGG + chr5_1:8767696-8767715 None:intergenic 35.0%
! TAATGATTTTTACCAGCCTC+AGG - chr5_1:8767776-8767795 Msa0715680:CDS 35.0%
AGGAAGACCATTAGAATCAA+CGG + chr5_1:8767859-8767878 None:intergenic 35.0%
TAGTGTTAAGTTAAGAGTGG+GGG + chr5_1:8768025-8768044 None:intergenic 35.0%
TCAGATAACCAAATCCAAAC+AGG - chr5_1:8768298-8768317 Msa0715680:intron 35.0%
ATTGATATAAGCAGCCTGTT+TGG + chr5_1:8768315-8768334 None:intergenic 35.0%
! CAATGCTTTGTGGTTAGTTA+GGG + chr5_1:8768728-8768747 None:intergenic 35.0%
GTTACGACCTTAGAAGATTT+GGG + chr5_1:8768777-8768796 None:intergenic 35.0%
AGTTACGACCTTAGAAGATT+TGG + chr5_1:8768778-8768797 None:intergenic 35.0%
ATCCATGTCCTTCATATAAC+TGG - chr5_1:8768826-8768845 Msa0715680:intron 35.0%
! AATGTTCTAAATAGGGGAGT+TGG + chr5_1:8768891-8768910 None:intergenic 35.0%
! CCCCTATTTAGAACATTAGT+TGG - chr5_1:8768894-8768913 Msa0715680:intron 35.0%
! GCCCAACTAATGTTCTAAAT+AGG + chr5_1:8768899-8768918 None:intergenic 35.0%
TTAGAACATTAGTTGGGCTT+AGG - chr5_1:8768901-8768920 Msa0715680:intron 35.0%
!!! AATTGTTAGGTATCGGGTTT+TGG + chr5_1:8768927-8768946 None:intergenic 35.0%
ACCTCAAATTGTTAGGTATC+GGG + chr5_1:8768933-8768952 None:intergenic 35.0%
! TTTTGGATGTTTCTTGTTCC+AGG - chr5_1:8769037-8769056 Msa0715680:intron 35.0%
! TGCTCTATTTTGTAGACATC+AGG + chr5_1:8769134-8769153 None:intergenic 35.0%
GAACTTTGTGATGTTGAATG+TGG - chr5_1:8769316-8769335 Msa0715680:intron 35.0%
TTATCAAGGAAAGCAAAGTG+TGG + chr5_1:8769392-8769411 None:intergenic 35.0%
CTTCATTCCCTTCTTTATCA+AGG + chr5_1:8769406-8769425 None:intergenic 35.0%
TGATAAAGAAGGGAATGAAG+AGG - chr5_1:8769406-8769425 Msa0715680:CDS 35.0%
GATAAAGAAGGGAATGAAGA+GGG - chr5_1:8769407-8769426 Msa0715680:CDS 35.0%
!! TTTTCAAGCAAGTACTGTCT+TGG + chr5_1:8769452-8769471 None:intergenic 35.0%
GTTATCTAACCATGACTTCT+TGG + chr5_1:8769575-8769594 None:intergenic 35.0%
GTACAAGCCTGTTATAGATT+AGG - chr5_1:8769682-8769701 Msa0715680:CDS 35.0%
ATAAACATTGAAGTGCACAG+AGG + chr5_1:8769763-8769782 None:intergenic 35.0%
!! TTCGTGAATTTAGTCTTGGA+TGG + chr5_1:8769841-8769860 None:intergenic 35.0%
GAGTTTCGTGAATTTAGTCT+TGG + chr5_1:8769845-8769864 None:intergenic 35.0%
GACTAAATTCACGAAACTCT+TGG - chr5_1:8769846-8769865 Msa0715680:five_prime_UTR 35.0%
!! ATCAGAAATTGCTGCTTTAG+TGG - chr5_1:8769872-8769891 Msa0715680:five_prime_UTR 35.0%
! TATCTTTGGTTGCTTGGTGA+AGG + chr5_1:8767479-8767498 None:intergenic 40.0%
GAAAGTTGAAGATGAAGGCA+TGG + chr5_1:8767569-8767588 None:intergenic 40.0%
AGGCTAAGGTGTGGAATTTA+GGG + chr5_1:8767637-8767656 None:intergenic 40.0%
TAACACTACCTCAACAACAC+CGG - chr5_1:8767685-8767704 Msa0715680:three_prime_UTR 40.0%
!! ACCACCACTTTTATTTCCTG+AGG + chr5_1:8767795-8767814 None:intergenic 40.0%
GGTTTACTACTACTAGTGCT+AGG + chr5_1:8767822-8767841 None:intergenic 40.0%
!! AGTTCAGCCGTTGATTCTAA+TGG - chr5_1:8767849-8767868 Msa0715680:CDS 40.0%
TGCTTCTACTTTAGCAGCTT+TGG - chr5_1:8767917-8767936 Msa0715680:CDS 40.0%
GCTTCTACTTTAGCAGCTTT+GGG - chr5_1:8767918-8767937 Msa0715680:CDS 40.0%
TGTTGCATTGCCTTATGAAC+AGG - chr5_1:8767995-8768014 Msa0715680:CDS 40.0%
AGTGTTAAGTTAAGAGTGGG+GGG + chr5_1:8768024-8768043 None:intergenic 40.0%
! GTTTTACTGAGCTGTTCTGA+AGG - chr5_1:8768177-8768196 Msa0715680:intron 40.0%
ACAAGCACTAGTGCAATTGT+GGG + chr5_1:8768264-8768283 None:intergenic 40.0%
ATAAGCAGCCTGTTTGGATT+TGG + chr5_1:8768309-8768328 None:intergenic 40.0%
AATGAGCTGAAGACAACCTA+TGG - chr5_1:8768332-8768351 Msa0715680:intron 40.0%
CGATCTTTGTTCATGCAGTT+CGG - chr5_1:8768512-8768531 Msa0715680:intron 40.0%
! GCAATGCTTTGTGGTTAGTT+AGG + chr5_1:8768729-8768748 None:intergenic 40.0%
AGAGAAAGTCATTCCTCTGA+AGG + chr5_1:8768753-8768772 None:intergenic 40.0%
TTCTCTGCCCAAATCTTCTA+AGG - chr5_1:8768767-8768786 Msa0715680:intron 40.0%
AGGACATGGATAGCAATAGA+GGG + chr5_1:8768817-8768836 None:intergenic 40.0%
AAGGACATGGATAGCAATAG+AGG + chr5_1:8768818-8768837 None:intergenic 40.0%
TGCCAGTTATATGAAGGACA+TGG + chr5_1:8768831-8768850 None:intergenic 40.0%
ACCCGATACCTAACAATTTG+AGG - chr5_1:8768929-8768948 Msa0715680:intron 40.0%
AGATTGGTGTGAGGTTTGTA+GGG - chr5_1:8769100-8769119 Msa0715680:intron 40.0%
TGAATGTGGATAACACGAAG+TGG - chr5_1:8769330-8769349 Msa0715680:CDS 40.0%
GAATGTGGATAACACGAAGT+GGG - chr5_1:8769331-8769350 Msa0715680:CDS 40.0%
AATGAAGAGGGCAATGTAGT+AGG - chr5_1:8769419-8769438 Msa0715680:CDS 40.0%
! TTCTAGTGCTGAAGCAAGAA+AGG - chr5_1:8769532-8769551 Msa0715680:CDS 40.0%
GTTGTTGATCCAAGAAGTCA+TGG - chr5_1:8769563-8769582 Msa0715680:intron 40.0%
GAAGGAAGTAGCAGTAAGCA+AGG + chr5_1:8767461-8767480 None:intergenic 45.0%
!!! ATTTGTTTTGAACACCCCCG+TGG - chr5_1:8767498-8767517 Msa0715680:three_prime_UTR 45.0%
AAAGATAGACGAGCCATCCA+CGG + chr5_1:8767518-8767537 None:intergenic 45.0%
TGGAATCTATGGAGACCGAT+TGG + chr5_1:8767545-8767564 None:intergenic 45.0%
! GAAGGCATGGTTGGAATCTA+TGG + chr5_1:8767556-8767575 None:intergenic 45.0%
! GTTGAAGATGAAGGCATGGT+TGG + chr5_1:8767565-8767584 None:intergenic 45.0%
CAGGCTAAGGTGTGGAATTT+AGG + chr5_1:8767638-8767657 None:intergenic 45.0%
GTTTGGATTTGAGCAGGCTA+AGG + chr5_1:8767651-8767670 None:intergenic 45.0%
GTCAAGGTTTGGATTTGAGC+AGG + chr5_1:8767657-8767676 None:intergenic 45.0%
!! CCACTTTTATTTCCTGAGGC+TGG + chr5_1:8767791-8767810 None:intergenic 45.0%
CCAGCCTCAGGAAATAAAAG+TGG - chr5_1:8767788-8767807 Msa0715680:CDS 45.0%
GCCTCAGGAAATAAAAGTGG+TGG - chr5_1:8767791-8767810 Msa0715680:CDS 45.0%
GTGTTAAGTTAAGAGTGGGG+GGG + chr5_1:8768023-8768042 None:intergenic 45.0%
!! TGCAATTGTGGGAGTGCTTA+TGG + chr5_1:8768253-8768272 None:intergenic 45.0%
CACAAGCACTAGTGCAATTG+TGG + chr5_1:8768265-8768284 None:intergenic 45.0%
CTACCTCTGCGACTATAGAA+CGG - chr5_1:8768545-8768564 Msa0715680:intron 45.0%
TCTGAAGGAGCAATGCTTTG+TGG + chr5_1:8768738-8768757 None:intergenic 45.0%
!! ACAAAGCATTGCTCCTTCAG+AGG - chr5_1:8768737-8768756 Msa0715680:intron 45.0%
GGACATGGATAGCAATAGAG+GGG + chr5_1:8768816-8768835 None:intergenic 45.0%
GGGGAATGCCAGTTATATGA+AGG + chr5_1:8768837-8768856 None:intergenic 45.0%
!! ACGTGGCTAGTTTGTTAGAG+GGG + chr5_1:8768856-8768875 None:intergenic 45.0%
!! CACGTGGCTAGTTTGTTAGA+GGG + chr5_1:8768857-8768876 None:intergenic 45.0%
!! TCACGTGGCTAGTTTGTTAG+AGG + chr5_1:8768858-8768877 None:intergenic 45.0%
GTTGGTTACATTTGCTCACG+TGG + chr5_1:8768873-8768892 None:intergenic 45.0%
TTGTTCCAGGCTCTTTCGAA+TGG - chr5_1:8769050-8769069 Msa0715680:intron 45.0%
TGTTCCAGGCTCTTTCGAAT+GGG - chr5_1:8769051-8769070 Msa0715680:intron 45.0%
TCGTGGAGTTCTATGCAGAT+TGG - chr5_1:8769084-8769103 Msa0715680:intron 45.0%
GTTCTATGCAGATTGGTGTG+AGG - chr5_1:8769091-8769110 Msa0715680:intron 45.0%
CAGATTGGTGTGAGGTTTGT+AGG - chr5_1:8769099-8769118 Msa0715680:intron 45.0%
GAGCAAGAGCTTGACGAATT+CGG - chr5_1:8769353-8769372 Msa0715680:CDS 45.0%
!! CTTGACGAATTCGGTGTTGA+GGG - chr5_1:8769362-8769381 Msa0715680:CDS 45.0%
AAGATAGACGAGCCATCCAC+GGG + chr5_1:8767517-8767536 None:intergenic 50.0%
ACGGTGGTGAGGAGGATATA+AGG + chr5_1:8767603-8767622 None:intergenic 50.0%
AATTTGATGCGACGGTGGTG+AGG + chr5_1:8767614-8767633 None:intergenic 50.0%
TAGGGAATTTGATGCGACGG+TGG + chr5_1:8767619-8767638 None:intergenic 50.0%
GATTTGAGCAGGCTAAGGTG+TGG + chr5_1:8767646-8767665 None:intergenic 50.0%
TCAACGGCTGAACTTGTCGT+GGG + chr5_1:8767843-8767862 None:intergenic 50.0%
ATCAACGGCTGAACTTGTCG+TGG + chr5_1:8767844-8767863 None:intergenic 50.0%
TGTTCATGCAGTTCGGTCAC+TGG - chr5_1:8768519-8768538 Msa0715680:intron 50.0%
CGTTCTATAGTCGCAGAGGT+AGG + chr5_1:8768547-8768566 None:intergenic 50.0%
TAGCCGTTCTATAGTCGCAG+AGG + chr5_1:8768551-8768570 None:intergenic 50.0%
GCATAGAACTCCACGACAGT+AGG + chr5_1:8769080-8769099 None:intergenic 50.0%
!! GCTTGACGAATTCGGTGTTG+AGG - chr5_1:8769361-8769380 Msa0715680:CDS 50.0%
AATGTAGATGCGCTTGCTCG+TGG - chr5_1:8769470-8769489 Msa0715680:CDS 50.0%
GCTTGCTCGTGGTGAAACAT+CGG - chr5_1:8769481-8769500 Msa0715680:CDS 50.0%
!! GTTTTGAACACCCCCGTGGA+TGG - chr5_1:8767502-8767521 Msa0715680:three_prime_UTR 55.0%
AGATAGACGAGCCATCCACG+GGG + chr5_1:8767516-8767535 None:intergenic 55.0%
TGGGGGGGAACCTGTTCATA+AGG + chr5_1:8768008-8768027 None:intergenic 55.0%
GCTTCCCATTCGAAAGAGCC+TGG + chr5_1:8769058-8769077 None:intergenic 55.0%
GAATGGGAAGCCTACTGTCG+TGG - chr5_1:8769067-8769086 Msa0715680:intron 55.0%
GATAGACGAGCCATCCACGG+GGG + chr5_1:8767515-8767534 None:intergenic 60.0%
TTGATGCGACGGTGGTGAGG+AGG + chr5_1:8767611-8767630 None:intergenic 60.0%
GGTGCCTCATGCACGTGTTG+CGG - chr5_1:8769502-8769521 Msa0715680:CDS 60.0%
GTGCCTCATGCACGTGTTGC+GGG - chr5_1:8769503-8769522 Msa0715680:CDS 60.0%
TGACCCGCAACACGTGCATG+AGG + chr5_1:8769509-8769528 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 8767432 8769914 8767432 ID=Msa0715680;Name=Msa0715680
chr5_1 mRNA 8767432 8769914 8767432 ID=Msa0715680-mRNA-1;Parent=Msa0715680;Name=Msa0715680-mRNA-1;_AED=0.07;_eAED=0.07;_QI=89|1|1|1|1|1|4|325|265
chr5_1 exon 8767432 8768039 8767432 ID=Msa0715680-mRNA-1:exon:3623;Parent=Msa0715680-mRNA-1
chr5_1 exon 8768184 8768287 8768184 ID=Msa0715680-mRNA-1:exon:3622;Parent=Msa0715680-mRNA-1
chr5_1 exon 8769330 8769554 8769330 ID=Msa0715680-mRNA-1:exon:3621;Parent=Msa0715680-mRNA-1
chr5_1 exon 8769640 8769914 8769640 ID=Msa0715680-mRNA-1:exon:3620;Parent=Msa0715680-mRNA-1
chr5_1 five_prime_UTR 8769826 8769914 8769826 ID=Msa0715680-mRNA-1:five_prime_utr;Parent=Msa0715680-mRNA-1
chr5_1 CDS 8769640 8769825 8769640 ID=Msa0715680-mRNA-1:cds;Parent=Msa0715680-mRNA-1
chr5_1 CDS 8769330 8769554 8769330 ID=Msa0715680-mRNA-1:cds;Parent=Msa0715680-mRNA-1
chr5_1 CDS 8768184 8768287 8768184 ID=Msa0715680-mRNA-1:cds;Parent=Msa0715680-mRNA-1
chr5_1 CDS 8767757 8768039 8767757 ID=Msa0715680-mRNA-1:cds;Parent=Msa0715680-mRNA-1
chr5_1 three_prime_UTR 8767432 8767756 8767432 ID=Msa0715680-mRNA-1:three_prime_utr;Parent=Msa0715680-mRNA-1
Gene Sequence

>Msa0715680

ATGGCTCGTCTATCTTTAAATCCAATCGGTCTCCATAGATTCCAACCATGCCTTCATCTTCAACTTTCTCAACAATTCACCTTATATCCTCCTCACCACCGTCGCATCAAATTCCCTAAATTCCACACCTTAGCCTGCTCAAATCCAAACCTTGACGAAAAAGATAACACTACCTCAACAACACCGCCTCAGGAAATAAAAGTGGTGGTTGAGCCTAGCACTAGTAGTAGTAAACCCACGACAAGTTCAGCCGTTGATTCTAATGGTCTTCCTCAATTGCCAAGTAAAGATATCAACAGAAAAATCGCTATTGCTTCTACTTTAGCAGCTTTGGGACTTTTCGTATTTGCTAGATTGGATTTTGGTGTTTCTTTGAAAGATCTCTCTGCTGTTGCATTGCCTTATGAACAGGCTCTTTCGAATGGGAAGCCTACTGTCGTGGAGTTCTATGCAGATTGGTGTGAGGTTTGTAGGGAATTAGCTCCTGATGTCTACAAAATAGAGCAGCAATACAAGAATAAAGTGAACTTTGTGATGTTGAATGTGGATAACACGAAGTGGGAGCAAGAGCTTGACGAATTCGGTGTTGAGGGTATTCCACACTTTGCTTTCCTTGATAAAGAAGGGAATGAAGAGGGCAATGTAGTAGGTAGACTTCCAAGACAGTACTTGCTTGAAAATGTAGATGCGCTTGCTCGTGGTGAAACATCGGTGCCTCATGCACGTGTTGCGGGTCAATATTCTAGTGCTGAAGCAAGAAAGGTGCATCAAGTTGTTGATCCAAGAAGTCATGGTTAG

Protein sequence

>Msa0715680

MARLSLNPIGLHRFQPCLHLQLSQQFTLYPPHHRRIKFPKFHTLACSNPNLDEKDNTTSTTPPQEIKVVVEPSTSSSKPTTSSAVDSNGLPQLPSKDINRKIAIASTLAALGLFVFARLDFGVSLKDLSAVALPYEQALSNGKPTVVEFYADWCEVCRELAPDVYKIEQQYKNKVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDKEGNEEGNVVGRLPRQYLLENVDALARGETSVPHARVAGQYSSAEARKVHQVVDPRSHG*