AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0225880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0225880 MtrunA17_Chr2g0332291 96.629 623 15 1 1 623 1 617 0.0 1209
Msa0225880 MtrunA17_Chr4g0003851 80.666 631 106 4 1 623 1 623 0.0 974
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0225880 AT1G80300.1 77.741 611 128 4 1 606 1 608 0.0 932
Msa0225880 AT1G15500.1 75.523 621 133 5 1 612 1 611 0.0 906

Find 147 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAAACCCACCAATGATTT+TGG 0.124637 2_1:+76213619 None:intergenic
TTGTTATCTGTTTCCTTTAT+TGG 0.142710 2_1:-76211899 Msa0225880:CDS
CGCTTGCAATTATGAGAATT+TGG 0.200674 2_1:-76213049 Msa0225880:CDS
CATATTTGTTGAATATAAAT+TGG 0.215723 2_1:+76210776 None:intergenic
ATCCTTGGACCGCGGTTTCT+TGG 0.227749 2_1:-76213074 Msa0225880:CDS
CTTTCAGGAGAAGCCGAAAA+TGG 0.229700 2_1:-76211104 Msa0225880:intron
CCTTAACTCTTCAAAGGTTT+TGG 0.243357 2_1:-76213899 Msa0225880:five_prime_UTR
TTGTGATTTCTGTTCTGTTT+TGG 0.265525 2_1:-76212983 Msa0225880:CDS
GATAGATTCTATATTCTAAA+AGG 0.268067 2_1:+76213825 None:intergenic
GCTTCTGCTGGTGTTGGTTC+TGG 0.273873 2_1:-76213497 Msa0225880:CDS
CAATTTATATTCAACAAATA+TGG 0.275165 2_1:-76210775 Msa0225880:CDS
TGATGTCTTCAAGATATATA+AGG 0.283832 2_1:-76211057 Msa0225880:CDS
GCACCCGTTATTGGAAAGTT+TGG 0.300802 2_1:-76210664 Msa0225880:CDS
GATCCACTCGCACCCGTTAT+TGG 0.319372 2_1:-76210673 Msa0225880:CDS
CCAAAACCTTTGAAGAGTTA+AGG 0.320668 2_1:+76213899 None:intergenic
GTGAATCTTCCTATGGCTAT+TGG 0.321415 2_1:-76213260 Msa0225880:CDS
TAGATTGCAATTCTATAGAT+AGG 0.328984 2_1:-76209677 Msa0225880:three_prime_UTR
ATACTTGGGAGGTGTGCTTT+TGG 0.331973 2_1:-76209927 Msa0225880:CDS
TCTAGTCTGAGGGAAACTTT+AGG 0.344531 2_1:-76211987 Msa0225880:CDS
CGCTCGTAGCCAGAAGAAAA+AGG 0.347930 2_1:-76211850 Msa0225880:intron
AATTGTTCACCCACCAATAA+AGG 0.352531 2_1:+76211886 None:intergenic
CTGTGCTTTAAGCCATTTGA+TGG 0.353294 2_1:+76213659 None:intergenic
CTGGTTTAACAATTTGTTGT+AGG 0.361025 2_1:-76209611 Msa0225880:three_prime_UTR
GGCGATTTCTCAACCGCAAC+TGG 0.363781 2_1:-76210829 Msa0225880:CDS
ACTTTAGGTCCTGGAGTTGA+TGG 0.364996 2_1:-76211972 Msa0225880:CDS
AGCTAATTCAACTCCATACT+TGG 0.368256 2_1:-76209942 Msa0225880:CDS
AAAAGCACACCTCCCAAGTA+TGG 0.374398 2_1:+76209929 None:intergenic
TTTGTTGTAGGTAAATTATC+TGG 0.377811 2_1:-76209599 Msa0225880:three_prime_UTR
TTCTATCCACTGTTTGGACT+TGG 0.381227 2_1:-76212056 Msa0225880:CDS
GTTGGTTCTGGTGGTGGTGA+TGG 0.387296 2_1:-76213485 Msa0225880:CDS
GATGTTGTATGCAACCCATT+AGG 0.390606 2_1:-76210019 Msa0225880:CDS
CAGTTCATGATCCTAACTTT+TGG 0.391159 2_1:-76209971 Msa0225880:CDS
GAAGCTGTTCTTCAATCAAA+AGG 0.398374 2_1:-76213725 Msa0225880:CDS
AAGCGATTCTATCCACTGTT+TGG 0.399212 2_1:-76212062 Msa0225880:CDS
GCCACATTAGTGGTTGCATA+TGG 0.400363 2_1:-76211028 Msa0225880:CDS
TCACCAAATCCCAAAATCAT+TGG 0.405028 2_1:-76213629 Msa0225880:CDS
TGCAACCCATTAGGAAAATC+TGG 0.407154 2_1:-76210010 Msa0225880:CDS
GCTGGTGTTGGTTCTGGTGG+TGG 0.411332 2_1:-76213491 Msa0225880:CDS
ATTTGATCCGTGCAAAGAAA+TGG 0.413264 2_1:-76210566 Msa0225880:CDS
TCACCTGCTTCTGTATATAA+AGG 0.424567 2_1:+76209749 None:intergenic
TAGCTAGTGAACCAAAAGTT+AGG 0.428507 2_1:+76209960 None:intergenic
ATAAAAGACGAGTACTCATT+CGG 0.430650 2_1:+76210853 None:intergenic
TAGGTCCTGGAGTTGATGGT+TGG 0.436364 2_1:-76211968 Msa0225880:CDS
AGGTCCTGGAGTTGATGGTT+GGG 0.439493 2_1:-76211967 Msa0225880:CDS
GATAACCTTCTTAGTATCCT+TGG 0.441619 2_1:-76213089 Msa0225880:CDS
ATTTCTTGCTGTAGGTCAAA+GGG 0.442605 2_1:-76210054 Msa0225880:intron
CGGATCAAATAAACTGTACT+TGG 0.442749 2_1:+76210579 None:intergenic
CAATCCAAACTTTCCAATAA+CGG 0.443581 2_1:+76210660 None:intergenic
TTCTCTAACTAATAATGGGT+TGG 0.455788 2_1:-76213600 Msa0225880:CDS
AAGGGATCTTGCCACATTAG+TGG 0.458361 2_1:-76211038 Msa0225880:CDS
CTGTCCGACCGGAGAATACA+AGG 0.461059 2_1:+76212021 None:intergenic
GGAAAGAGAAACTGCTGTTA+AGG 0.462177 2_1:-76209816 Msa0225880:CDS
AATCCAAACTTTCCAATAAC+GGG 0.463035 2_1:+76210661 None:intergenic
TTAATCTTGTTGAAGTTACA+TGG 0.465742 2_1:-76210997 Msa0225880:CDS
TTTATGTCATGGCTGAATTG+TGG 0.465791 2_1:-76213013 Msa0225880:CDS
TTTCAGGAGAAGCCGAAAAT+GGG 0.471676 2_1:-76211103 Msa0225880:intron
TTATGTCATGGCTGAATTGT+GGG 0.475139 2_1:-76213012 Msa0225880:CDS
TTATCTGTTTCCTTTATTGG+TGG 0.477332 2_1:-76211896 Msa0225880:CDS
CTGAGGGAAACTTTAGGTCC+TGG 0.481369 2_1:-76211981 Msa0225880:CDS
TAAAAGACGAGTACTCATTC+GGG 0.484768 2_1:+76210854 None:intergenic
GAAGCAGCTTCTGCTGGTGT+TGG 0.488107 2_1:-76213503 Msa0225880:CDS
TCACTCATGAAAGAAGTGTC+TGG 0.488129 2_1:-76209630 Msa0225880:three_prime_UTR
CTCAAGAAGATTATACCACT+TGG 0.491337 2_1:-76213398 Msa0225880:CDS
GATGTCTTCAAGATATATAA+GGG 0.494355 2_1:-76211056 Msa0225880:CDS
AATGTTGCCCTTGTATTCTC+CGG 0.497366 2_1:-76212029 Msa0225880:CDS
GTAATGAGGGATAGAAAAGA+TGG 0.498930 2_1:+76213780 None:intergenic
TATCTGTTTCCTTTATTGGT+GGG 0.500161 2_1:-76211895 Msa0225880:CDS
AAGCTGTTCTTCAATCAAAA+GGG 0.502879 2_1:-76213724 Msa0225880:CDS
TATATTCAACAAATATGGAT+GGG 0.507628 2_1:-76210770 Msa0225880:CDS
GTCCTGCTTATGACTGGAGT+TGG 0.510084 2_1:-76210721 Msa0225880:CDS
GAAATCAAAGCTCAAAGCTC+AGG 0.510846 2_1:-76210975 Msa0225880:intron
TTCTGGCTACGAGCGGGAAG+AGG 0.510867 2_1:+76211858 None:intergenic
AATTTCTTGCTGTAGGTCAA+AGG 0.511554 2_1:-76210055 Msa0225880:intron
AACATGGGTGAATCTTCCTA+TGG 0.516555 2_1:-76213267 Msa0225880:CDS
GATGAGCATTGTTGTCGGTA+TGG 0.520984 2_1:-76211925 Msa0225880:CDS
ATGTAGGCCATTTCTTTGCA+CGG 0.521303 2_1:+76210559 None:intergenic
GCACCTTTATATACAGAAGC+AGG 0.523808 2_1:-76209752 Msa0225880:CDS
AAAGCTGAAGCAGCTTCTGC+TGG 0.525584 2_1:-76213509 Msa0225880:CDS
GACGAGTACTCATTCGGGCT+AGG 0.527586 2_1:+76210859 None:intergenic
TTATATTCAACAAATATGGA+TGG 0.528143 2_1:-76210771 Msa0225880:CDS
AGATTCAGATGGACTAATGA+AGG 0.533272 2_1:+76209724 None:intergenic
TTCCCACAAACCCCAAAACC+AGG 0.534323 2_1:-76213691 Msa0225880:CDS
TGTCCACCTTAACTCTTCAA+AGG 0.534980 2_1:-76213905 Msa0225880:five_prime_UTR
GCAATGATGAGCATTGTTGT+CGG 0.538797 2_1:-76211930 Msa0225880:CDS
TTCTTAGTATCCTTGGACCG+CGG 0.539530 2_1:-76213082 Msa0225880:CDS
TCTGCTGGTGTTGGTTCTGG+TGG 0.540827 2_1:-76213494 Msa0225880:CDS
TCAACAAAACATGAGTAATG+AGG 0.541646 2_1:+76213766 None:intergenic
GAAGGTAGCGATTCCAGTTG+CGG 0.541781 2_1:+76210816 None:intergenic
CCAAATCCCAAAATCATTGG+TGG 0.541900 2_1:-76213626 Msa0225880:CDS
GGTTATCAGCAAATGCTTGA+GGG 0.546477 2_1:+76213105 None:intergenic
CAACAAAACATGAGTAATGA+GGG 0.546582 2_1:+76213767 None:intergenic
TTGCTAGCTGCTGTATATGT+TGG 0.546905 2_1:-76210631 Msa0225880:CDS
AGAAGAACTCGAGAAAGAGT+TGG 0.547282 2_1:-76209837 Msa0225880:CDS
AAAGTATTTGACTGTCCGAC+CGG 0.548078 2_1:+76212010 None:intergenic
TGGGTTGCATACAACATCAA+TGG 0.549558 2_1:+76210024 None:intergenic
AGAAATGGCCTACATACCCT+TGG 0.550644 2_1:-76210551 Msa0225880:CDS
AACCTTGGTATCCTCATCCA+AGG 0.550694 2_1:+76210534 None:intergenic
ATGAGCATTGTTGTCGGTAT+GGG 0.551365 2_1:-76211924 Msa0225880:CDS
GACCAAGAAACCGCGGTCCA+AGG 0.557335 2_1:+76213072 None:intergenic
TGAGGAGTTCAAGATTCAGA+TGG 0.559870 2_1:+76209713 None:intergenic
GGAGAATACAAGGGCAACAT+TGG 0.560749 2_1:+76212031 None:intergenic
AACCAACTCCAGTCATAAGC+AGG 0.562200 2_1:+76210719 None:intergenic
TTGCCCTTGTATTCTCCGGT+CGG 0.566110 2_1:-76212025 Msa0225880:CDS
TGTGCTTTAAGCCATTTGAT+GGG 0.568863 2_1:+76213660 None:intergenic
ATATTCAACAAATATGGATG+GGG 0.569187 2_1:-76210769 Msa0225880:CDS
GGCCTACATACCCTTGGATG+AGG 0.576175 2_1:-76210545 Msa0225880:CDS
CCTACCGTCCTGCTTATGAC+TGG 0.580717 2_1:-76210727 Msa0225880:CDS
CAAATCCCAAAATCATTGGT+GGG 0.583122 2_1:-76213625 Msa0225880:CDS
AGGTTATCAGCAAATGCTTG+AGG 0.584662 2_1:+76213104 None:intergenic
GCAGATAACCACCGTTGATG+AGG 0.585549 2_1:-76212087 Msa0225880:intron
TTTCCAATAACGGGTGCGAG+TGG 0.586487 2_1:+76210670 None:intergenic
TAATGAGGGATAGAAAAGAT+GGG 0.587561 2_1:+76213781 None:intergenic
GGGTGAATATAGTTGCTAAG+AGG 0.591742 2_1:+76213125 None:intergenic
ATCTAAAATTAATTATTGTG+AGG 0.596797 2_1:+76209695 None:intergenic
ATCCTCATCCAAGGGTATGT+AGG 0.597277 2_1:+76210543 None:intergenic
ACATATACAGCAGCTAGCAA+TGG 0.597920 2_1:+76210634 None:intergenic
ATGGCCCAACCATCAACTCC+AGG 0.601776 2_1:+76211963 None:intergenic
GAAGCCGAAAATGGGAACAA+TGG 0.602041 2_1:-76211095 Msa0225880:CDS
GCTAATTCAACTCCATACTT+GGG 0.602853 2_1:-76209941 Msa0225880:CDS
ATGTCATGGCTGAATTGTGG+GGG 0.605136 2_1:-76213010 Msa0225880:CDS
AAACCTTTGAAGAGTTAAGG+TGG 0.606025 2_1:+76213902 None:intergenic
AAACTGAGTGTCAAGTGACT+TGG 0.606198 2_1:+76209877 None:intergenic
TCCATATGCAACCACTAATG+TGG 0.607287 2_1:+76211027 None:intergenic
TCTTCATTCTCAGTCAACAC+TGG 0.610944 2_1:+76209791 None:intergenic
GCGGTCCAAGGATACTAAGA+AGG 0.613184 2_1:+76213084 None:intergenic
GTTCTTGTTGTGACTGCTAG+AGG 0.613969 2_1:-76213320 Msa0225880:CDS
CAAATTCTCATAATTGCAAG+CGG 0.621047 2_1:+76213050 None:intergenic
GAATCGCTTTGCCTCATCAA+CGG 0.622356 2_1:+76212076 None:intergenic
AACATAAAACCAATAGCCAT+AGG 0.622502 2_1:+76213251 None:intergenic
ACTGAGAATGAAGATGAAGA+TGG 0.625187 2_1:-76209782 Msa0225880:CDS
ACCCTTGGATGAGGATACCA+AGG 0.628244 2_1:-76210536 Msa0225880:intron
TCAAGAAGATTATACCACTT+GGG 0.628762 2_1:-76213397 Msa0225880:CDS
TTGAACTCTTCATAGAAACA+TGG 0.629436 2_1:-76213747 Msa0225880:exon
TGAGGGATAGAAAAGATGGG+TGG 0.634117 2_1:+76213784 None:intergenic
TATGTCATGGCTGAATTGTG+GGG 0.635142 2_1:-76213011 Msa0225880:CDS
GCTTACAAGCATCATCGTGA+AGG 0.635903 2_1:+76210798 None:intergenic
TTCTTCTTCGCGACGCAATG+CGG 0.636676 2_1:+76209853 None:intergenic
AATTCAACTCCATACTTGGG+AGG 0.648893 2_1:-76209938 Msa0225880:CDS
ACCTTGGTATCCTCATCCAA+GGG 0.649968 2_1:+76210535 None:intergenic
CTTGCTGTAGGTCAAAGGGA+AGG 0.663386 2_1:-76210050 Msa0225880:intron
AACTCCAGTCATAAGCAGGA+CGG 0.669905 2_1:+76210723 None:intergenic
CCAGTCATAAGCAGGACGGT+AGG 0.670943 2_1:+76210727 None:intergenic
TCGCTTTGCCTCATCAACGG+TGG 0.685636 2_1:+76212079 None:intergenic
TGTCCGACCGGAGAATACAA+GGG 0.707927 2_1:+76212022 None:intergenic
TTGGCTCCAAGTCCAAACAG+TGG 0.718510 2_1:+76212050 None:intergenic
GCAAGCGGACCAAGAAACCG+CGG 0.733587 2_1:+76213065 None:intergenic
AACCCATTAGGAAAATCTGG+TGG 0.735499 2_1:-76210007 Msa0225880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTGCTATATCTAAAT+TGG - chr2_1:76210688-76210707 Msa0225880:CDS 15.0%
!!! GAATACTAATATATACTTTT+TGG - chr2_1:76211345-76211364 Msa0225880:intron 15.0%
!! GTATATTAAAAAGTAAAACA+AGG + chr2_1:76212252-76212271 None:intergenic 15.0%
!!! TTTCAAAATTTTGGATTTTA+TGG + chr2_1:76212274-76212293 None:intergenic 15.0%
!!! AAATATTATTGAAAAGTACA+TGG + chr2_1:76212300-76212319 None:intergenic 15.0%
!!! ATTTATATTTTACATCGTTA+TGG - chr2_1:76212326-76212345 Msa0225880:intron 15.0%
!!! CATATTTGTTGAATATAAAT+TGG + chr2_1:76212683-76212702 None:intergenic 15.0%
!! CAATTTATATTCAACAAATA+TGG - chr2_1:76212681-76212700 Msa0225880:intron 15.0%
!! AAAGATTAAAAGTTATGTAA+AGG - chr2_1:76213023-76213042 Msa0225880:CDS 15.0%
!!! ATCTAAAATTAATTATTGTG+AGG + chr2_1:76213764-76213783 None:intergenic 15.0%
!! GATAGATTCTATATTCTAAA+AGG + chr2_1:76209634-76209653 None:intergenic 20.0%
!!! TTATACCTTTTTTGAAAACA+TGG - chr2_1:76210173-76210192 Msa0225880:intron 20.0%
!!! TATACCTTTTTTGAAAACAT+GGG - chr2_1:76210174-76210193 Msa0225880:intron 20.0%
!!! TTCCTTTTATTGCTTTTTTT+GGG - chr2_1:76210287-76210306 Msa0225880:intron 20.0%
!!! TTTCTGTTTATTTTATGTCA+TGG - chr2_1:76210432-76210451 Msa0225880:intron 20.0%
!!! GACATATGATAAATTTTTTC+TGG - chr2_1:76210597-76210616 Msa0225880:CDS 20.0%
!! TAATGAATGATAAGAAGAAA+AGG + chr2_1:76210795-76210814 None:intergenic 20.0%
!!! TTGTTGTTAAGTTTGTTAAA+GGG - chr2_1:76210850-76210869 Msa0225880:CDS 20.0%
!! CTAGTTAACTATTCAAAATT+GGG + chr2_1:76211100-76211119 None:intergenic 20.0%
!! TCTAGTTAACTATTCAAAAT+TGG + chr2_1:76211101-76211120 None:intergenic 20.0%
!!! AAAATAATACCTTTTTCTTC+TGG + chr2_1:76211618-76211637 None:intergenic 20.0%
!!! CTATATCATTCCAATTTTAT+CGG - chr2_1:76211801-76211820 Msa0225880:intron 20.0%
!! TGCTATTGAAATAAAAACTA+TGG + chr2_1:76212178-76212197 None:intergenic 20.0%
!!! TTTTATTTCAATAGCATGAT+TGG - chr2_1:76212182-76212201 Msa0225880:intron 20.0%
!!! ACATGGTTTTTTCAAAATTT+TGG + chr2_1:76212283-76212302 None:intergenic 20.0%
!! TTATATTCAACAAATATGGA+TGG - chr2_1:76212685-76212704 Msa0225880:intron 20.0%
!! TATATTCAACAAATATGGAT+GGG - chr2_1:76212686-76212705 Msa0225880:intron 20.0%
!!! TTCTTTTCTCTCATATTATT+CGG - chr2_1:76212759-76212778 Msa0225880:intron 20.0%
!!! ACTTTATTTTCTAATAGTCA+AGG - chr2_1:76213065-76213084 Msa0225880:CDS 20.0%
!!! TGTATAATTTTGGAGTATTA+AGG + chr2_1:76213338-76213357 None:intergenic 20.0%
!!! CCTATAAAGTTGTATAATTT+TGG + chr2_1:76213348-76213367 None:intergenic 20.0%
!! CCAAAATTATACAACTTTAT+AGG - chr2_1:76213345-76213364 Msa0225880:CDS 20.0%
!! GGTTTTCTCTAACTAATAAT+GGG - chr2_1:76209852-76209871 Msa0225880:CDS 25.0%
!!! ATCAAAGACATTAGCTTTTA+AGG + chr2_1:76209900-76209919 None:intergenic 25.0%
!! ACTGAGAAACAAAAGTTTTT+AGG - chr2_1:76210019-76210038 Msa0225880:CDS 25.0%
!! ATCTAATGTTTTGTCAAAAC+AGG - chr2_1:76210243-76210262 Msa0225880:intron 25.0%
!!! GTTCCTTTTATTGCTTTTTT+TGG - chr2_1:76210286-76210305 Msa0225880:intron 25.0%
!!! TCCTTTTATTGCTTTTTTTG+GGG - chr2_1:76210288-76210307 Msa0225880:intron 25.0%
! AATAGAACAAACTCATCAAA+AGG + chr2_1:76210670-76210689 None:intergenic 25.0%
!!! GTTGTTGTTAAGTTTGTTAA+AGG - chr2_1:76210849-76210868 Msa0225880:CDS 25.0%
!!! TAAGTTTGTTAAAGGGATAT+TGG - chr2_1:76210857-76210876 Msa0225880:CDS 25.0%
!!! AAGTTTGTTAAAGGGATATT+GGG - chr2_1:76210858-76210877 Msa0225880:CDS 25.0%
! AGACAAAAGATTACAAATGA+GGG + chr2_1:76210906-76210925 None:intergenic 25.0%
! TAGACAAAAGATTACAAATG+AGG + chr2_1:76210907-76210926 None:intergenic 25.0%
! TTCATCAAGTAATACTTAAG+TGG - chr2_1:76210974-76210993 Msa0225880:intron 25.0%
!!! AAGTTTCAAGTTGTTTATCA+AGG - chr2_1:76211173-76211192 Msa0225880:intron 25.0%
! TTGTTATCTGTTTCCTTTAT+TGG - chr2_1:76211557-76211576 Msa0225880:intron 25.0%
!! CTTACATTTTTGTCTCATTA+TGG - chr2_1:76211691-76211710 Msa0225880:intron 25.0%
! AAATTGGAATGATATAGAGA+AGG + chr2_1:76211798-76211817 None:intergenic 25.0%
! TGATGTCTTCAAGATATATA+AGG - chr2_1:76212399-76212418 Msa0225880:intron 25.0%
! GATGTCTTCAAGATATATAA+GGG - chr2_1:76212400-76212419 Msa0225880:intron 25.0%
! TTAATCTTGTTGAAGTTACA+TGG - chr2_1:76212459-76212478 Msa0225880:intron 25.0%
!! TATATCACTTGTTTCAGTTT+TGG - chr2_1:76212507-76212526 Msa0225880:intron 25.0%
! ATATTCAACAAATATGGATG+GGG - chr2_1:76212687-76212706 Msa0225880:intron 25.0%
! CATGTATGATAAAGTTTCAT+TGG + chr2_1:76213000-76213019 None:intergenic 25.0%
! AATAAGCTGAGAACAATTTA+TGG + chr2_1:76213209-76213228 None:intergenic 25.0%
! TTAAGATGTTTAACCAAACA+AGG - chr2_1:76213312-76213331 Msa0225880:CDS 25.0%
! TAGATTGCAATTCTATAGAT+AGG - chr2_1:76213779-76213798 Msa0225880:five_prime_UTR 25.0%
!! TTTGTTGTAGGTAAATTATC+TGG - chr2_1:76213857-76213876 Msa0225880:five_prime_UTR 25.0%
TAATGAGGGATAGAAAAGAT+GGG + chr2_1:76209678-76209697 None:intergenic 30.0%
CAACAAAACATGAGTAATGA+GGG + chr2_1:76209692-76209711 None:intergenic 30.0%
TCAACAAAACATGAGTAATG+AGG + chr2_1:76209693-76209712 None:intergenic 30.0%
TTGAACTCTTCATAGAAACA+TGG - chr2_1:76209709-76209728 Msa0225880:exon 30.0%
AAGCTGTTCTTCAATCAAAA+GGG - chr2_1:76209732-76209751 Msa0225880:CDS 30.0%
!! ATTTGATGGGTTTAAAAACC+TGG + chr2_1:76209786-76209805 None:intergenic 30.0%
! AGGTTTTTAAACCCATCAAA+TGG - chr2_1:76209785-76209804 Msa0225880:CDS 30.0%
! GGGTTTTCTCTAACTAATAA+TGG - chr2_1:76209851-76209870 Msa0225880:CDS 30.0%
!! TTCTCTAACTAATAATGGGT+TGG - chr2_1:76209856-76209875 Msa0225880:CDS 30.0%
TCAAGAAGATTATACCACTT+GGG - chr2_1:76210059-76210078 Msa0225880:intron 30.0%
! TTCACCCATGTTTTCAAAAA+AGG + chr2_1:76210181-76210200 None:intergenic 30.0%
AACATAAAACCAATAGCCAT+AGG + chr2_1:76210208-76210227 None:intergenic 30.0%
CAAATTCTCATAATTGCAAG+CGG + chr2_1:76210409-76210428 None:intergenic 30.0%
! TTGTGATTTCTGTTCTGTTT+TGG - chr2_1:76210473-76210492 Msa0225880:intron 30.0%
! TGTGATTTCTGTTCTGTTTT+GGG - chr2_1:76210474-76210493 Msa0225880:intron 30.0%
ATCAAAAGGTGAACATGTTT+AGG + chr2_1:76210656-76210675 None:intergenic 30.0%
GTGTTCTACTTGCAATAATA+TGG - chr2_1:76210732-76210751 Msa0225880:CDS 30.0%
! CTAATAGTTTGCATCATGAA+AGG + chr2_1:76211057-76211076 None:intergenic 30.0%
TGATGCAAACTATTAGAAAG+AGG - chr2_1:76211061-76211080 Msa0225880:CDS 30.0%
TAGAAAGAGGAATATGATGT+TGG - chr2_1:76211074-76211093 Msa0225880:CDS 30.0%
CAAGTTGTTTATCAAGGAAT+TGG - chr2_1:76211179-76211198 Msa0225880:intron 30.0%
GAAGTTCTTATTGTTTGTGA+AGG - chr2_1:76211314-76211333 Msa0225880:intron 30.0%
!! TCAAATACTTTTCTAGTCTG+AGG - chr2_1:76211458-76211477 Msa0225880:intron 30.0%
!! CAAATACTTTTCTAGTCTGA+GGG - chr2_1:76211459-76211478 Msa0225880:intron 30.0%
!! AATGCTCATCATTGCTTTTA+GGG + chr2_1:76211521-76211540 None:intergenic 30.0%
TTATCTGTTTCCTTTATTGG+TGG - chr2_1:76211560-76211579 Msa0225880:intron 30.0%
TATCTGTTTCCTTTATTGGT+GGG - chr2_1:76211561-76211580 Msa0225880:intron 30.0%
! TCATTCCAATTTTATCGGAT+AGG - chr2_1:76211806-76211825 Msa0225880:intron 30.0%
AACAAGGATATCAAATAGCT+AGG + chr2_1:76212236-76212255 None:intergenic 30.0%
ATAAAAGACGAGTACTCATT+CGG + chr2_1:76212606-76212625 None:intergenic 30.0%
! AATGAGTACTCGTCTTTTAT+GGG - chr2_1:76212606-76212625 Msa0225880:intron 30.0%
AATCCAAACTTTCCAATAAC+GGG + chr2_1:76212798-76212817 None:intergenic 30.0%
CAATCCAAACTTTCCAATAA+CGG + chr2_1:76212799-76212818 None:intergenic 30.0%
! TTTTTGTAAGCTCTCCAAAA+CGG + chr2_1:76213171-76213190 None:intergenic 30.0%
! GTGTTAAAATTTCTTGCTGT+AGG - chr2_1:76213394-76213413 Msa0225880:CDS 30.0%
!! CTGGTTTAACAATTTGTTGT+AGG - chr2_1:76213845-76213864 Msa0225880:five_prime_UTR 30.0%
! AAACCTTTGAAGAGTTAAGG+TGG + chr2_1:76209557-76209576 None:intergenic 35.0%
! CCAAAACCTTTGAAGAGTTA+AGG + chr2_1:76209560-76209579 None:intergenic 35.0%
! CCTTAACTCTTCAAAGGTTT+TGG - chr2_1:76209557-76209576 Msa0225880:three_prime_UTR 35.0%
GTAATGAGGGATAGAAAAGA+TGG + chr2_1:76209679-76209698 None:intergenic 35.0%
GAAGCTGTTCTTCAATCAAA+AGG - chr2_1:76209731-76209750 Msa0225880:CDS 35.0%
!!! GGTTTAAAAACCTGGTTTTG+GGG + chr2_1:76209778-76209797 None:intergenic 35.0%
!! GGGTTTAAAAACCTGGTTTT+GGG + chr2_1:76209779-76209798 None:intergenic 35.0%
! TGGGTTTAAAAACCTGGTTT+TGG + chr2_1:76209780-76209799 None:intergenic 35.0%
! TGTGCTTTAAGCCATTTGAT+GGG + chr2_1:76209799-76209818 None:intergenic 35.0%
TCACCAAATCCCAAAATCAT+TGG - chr2_1:76209827-76209846 Msa0225880:CDS 35.0%
CAAATCCCAAAATCATTGGT+GGG - chr2_1:76209831-76209850 Msa0225880:CDS 35.0%
! GAAAACCCACCAATGATTTT+GGG + chr2_1:76209839-76209858 None:intergenic 35.0%
! AGAAAACCCACCAATGATTT+TGG + chr2_1:76209840-76209859 None:intergenic 35.0%
!! TGATGGTGAAACAGTTTTTG+AGG - chr2_1:76209988-76210007 Msa0225880:CDS 35.0%
CTCAAGAAGATTATACCACT+TGG - chr2_1:76210058-76210077 Msa0225880:intron 35.0%
CAAAAAAACATCATCCCAAG+TGG + chr2_1:76210076-76210095 None:intergenic 35.0%
GCCCCAAAAAAAGCAATAAA+AGG + chr2_1:76210292-76210311 None:intergenic 35.0%
!!! ATTGCTTTTTTTGGGGCTTT+TGG - chr2_1:76210295-76210314 Msa0225880:intron 35.0%
!!! TTGCTTTTTTTGGGGCTTTT+GGG - chr2_1:76210296-76210315 Msa0225880:intron 35.0%
GATAACCTTCTTAGTATCCT+TGG - chr2_1:76210367-76210386 Msa0225880:intron 35.0%
CGCTTGCAATTATGAGAATT+TGG - chr2_1:76210407-76210426 Msa0225880:intron 35.0%
TTTATGTCATGGCTGAATTG+TGG - chr2_1:76210443-76210462 Msa0225880:intron 35.0%
TTATGTCATGGCTGAATTGT+GGG - chr2_1:76210444-76210463 Msa0225880:intron 35.0%
! GTGATTTCTGTTCTGTTTTG+GGG - chr2_1:76210475-76210494 Msa0225880:intron 35.0%
!! TGATTTCTGTTCTGTTTTGG+GGG - chr2_1:76210476-76210495 Msa0225880:intron 35.0%
AGATACATGCTATCATGTGA+CGG - chr2_1:76211000-76211019 Msa0225880:CDS 35.0%
GTTTCCATAAGTAGTTGTTC+AGG - chr2_1:76211267-76211286 Msa0225880:intron 35.0%
AAAGCCTGAACAACTACTTA+TGG + chr2_1:76211274-76211293 None:intergenic 35.0%
AACTTCATGATGAGCTAGTT+CGG + chr2_1:76211300-76211319 None:intergenic 35.0%
!! CAATGCTCATCATTGCTTTT+AGG + chr2_1:76211522-76211541 None:intergenic 35.0%
AATTGTTCACCCACCAATAA+AGG + chr2_1:76211573-76211592 None:intergenic 35.0%
ATGAGCAACTATATGGACAA+TGG + chr2_1:76211655-76211674 None:intergenic 35.0%
CAGTACAATGAGCAACTATA+TGG + chr2_1:76211662-76211681 None:intergenic 35.0%
TGAGACAAAAATGTAAGCAG+TGG + chr2_1:76211688-76211707 None:intergenic 35.0%
! TCCAATTTTATCGGATAGGA+TGG - chr2_1:76211810-76211829 Msa0225880:intron 35.0%
TCCATCCTATCCGATAAAAT+TGG + chr2_1:76211814-76211833 None:intergenic 35.0%
! AGCTTTCTAGTCTTCGATTT+CGG + chr2_1:76212047-76212066 None:intergenic 35.0%
CTAGAAAGCTAGCACAAAAT+AGG - chr2_1:76212057-76212076 Msa0225880:CDS 35.0%
AGCACAAAATAGGTACGTTA+CGG - chr2_1:76212067-76212086 Msa0225880:CDS 35.0%
! ATGTAGTACTGAACAGCTAA+TGG - chr2_1:76212097-76212116 Msa0225880:intron 35.0%
ACATCGTTATGGATTCTTTC+AGG - chr2_1:76212337-76212356 Msa0225880:intron 35.0%
TAAAAGACGAGTACTCATTC+GGG + chr2_1:76212605-76212624 None:intergenic 35.0%
! GAATGAGTACTCGTCTTTTA+TGG - chr2_1:76212605-76212624 Msa0225880:intron 35.0%
! CTTGCTGAATATGTTTTGCA+AGG + chr2_1:76212853-76212872 None:intergenic 35.0%
CGGATCAAATAAACTGTACT+TGG + chr2_1:76212880-76212899 None:intergenic 35.0%
ATTTGATCCGTGCAAAGAAA+TGG - chr2_1:76212890-76212909 Msa0225880:intron 35.0%
CAGGAGATGTAACAAATGAA+TGG + chr2_1:76213122-76213141 None:intergenic 35.0%
TACTGCTATAAACACCTGTA+AGG - chr2_1:76213145-76213164 Msa0225880:CDS 35.0%
! AAGCTATTCTAGAGAGATTG+CGG + chr2_1:76213233-76213252 None:intergenic 35.0%
! AATTTCTTGCTGTAGGTCAA+AGG - chr2_1:76213401-76213420 Msa0225880:CDS 35.0%
! ATTTCTTGCTGTAGGTCAAA+GGG - chr2_1:76213402-76213421 Msa0225880:CDS 35.0%
! CAGTTCATGATCCTAACTTT+TGG - chr2_1:76213485-76213504 Msa0225880:CDS 35.0%
TAGCTAGTGAACCAAAAGTT+AGG + chr2_1:76213499-76213518 None:intergenic 35.0%
AGCTAATTCAACTCCATACT+TGG - chr2_1:76213514-76213533 Msa0225880:CDS 35.0%
GCTAATTCAACTCCATACTT+GGG - chr2_1:76213515-76213534 Msa0225880:CDS 35.0%
!! TTTTGGTGATTGTTCTTGCA+TGG - chr2_1:76213546-76213565 Msa0225880:CDS 35.0%
ACTGAGAATGAAGATGAAGA+TGG - chr2_1:76213674-76213693 Msa0225880:CDS 35.0%
TCACCTGCTTCTGTATATAA+AGG + chr2_1:76213710-76213729 None:intergenic 35.0%
!! AGATTCAGATGGACTAATGA+AGG + chr2_1:76213735-76213754 None:intergenic 35.0%
TGTCCACCTTAACTCTTCAA+AGG - chr2_1:76209551-76209570 Msa0225880:three_prime_UTR 40.0%
! CTGTGCTTTAAGCCATTTGA+TGG + chr2_1:76209800-76209819 None:intergenic 40.0%
!!! CCACCAATGATTTTGGGATT+TGG + chr2_1:76209833-76209852 None:intergenic 40.0%
CCAAATCCCAAAATCATTGG+TGG - chr2_1:76209830-76209849 Msa0225880:CDS 40.0%
AACATGGGTGAATCTTCCTA+TGG - chr2_1:76210189-76210208 Msa0225880:intron 40.0%
GTGAATCTTCCTATGGCTAT+TGG - chr2_1:76210196-76210215 Msa0225880:intron 40.0%
GGGTGAATATAGTTGCTAAG+AGG + chr2_1:76210334-76210353 None:intergenic 40.0%
GGTTATCAGCAAATGCTTGA+GGG + chr2_1:76210354-76210373 None:intergenic 40.0%
AGGTTATCAGCAAATGCTTG+AGG + chr2_1:76210355-76210374 None:intergenic 40.0%
TATGTCATGGCTGAATTGTG+GGG - chr2_1:76210445-76210464 Msa0225880:intron 40.0%
ACTTCATGATGAGCTAGTTC+GGG + chr2_1:76211299-76211318 None:intergenic 40.0%
AAGCGATTCTATCCACTGTT+TGG - chr2_1:76211394-76211413 Msa0225880:intron 40.0%
TTCTATCCACTGTTTGGACT+TGG - chr2_1:76211400-76211419 Msa0225880:intron 40.0%
AATGTTGCCCTTGTATTCTC+CGG - chr2_1:76211427-76211446 Msa0225880:intron 40.0%
! AAAGTATTTGACTGTCCGAC+CGG + chr2_1:76211449-76211468 None:intergenic 40.0%
TCTAGTCTGAGGGAAACTTT+AGG - chr2_1:76211469-76211488 Msa0225880:intron 40.0%
!! CATCATTGCTTTTAGGGAGA+TGG + chr2_1:76211515-76211534 None:intergenic 40.0%
! GCAATGATGAGCATTGTTGT+CGG - chr2_1:76211526-76211545 Msa0225880:intron 40.0%
! ATGAGCATTGTTGTCGGTAT+GGG - chr2_1:76211532-76211551 Msa0225880:intron 40.0%
TTCGATTTCGGTTAAGCAGT+GGG + chr2_1:76212035-76212054 None:intergenic 40.0%
AATAGGTACGTTACGGAGTA+TGG - chr2_1:76212074-76212093 Msa0225880:CDS 40.0%
! ACAGCTAATGGAAAGCATAC+AGG - chr2_1:76212109-76212128 Msa0225880:intron 40.0%
TTTCAGGAGAAGCCGAAAAT+GGG - chr2_1:76212353-76212372 Msa0225880:intron 40.0%
! CTCTCCATTGTTCCCATTTT+CGG + chr2_1:76212368-76212387 None:intergenic 40.0%
TCCATATGCAACCACTAATG+TGG + chr2_1:76212432-76212451 None:intergenic 40.0%
GAAATCAAAGCTCAAAGCTC+AGG - chr2_1:76212481-76212500 Msa0225880:intron 40.0%
! ATTTCCAGAGGTGTGTATGA+GGG + chr2_1:76212567-76212586 None:intergenic 40.0%
! AATTTCCAGAGGTGTGTATG+AGG + chr2_1:76212568-76212587 None:intergenic 40.0%
ACATATACAGCAGCTAGCAA+TGG + chr2_1:76212825-76212844 None:intergenic 40.0%
TTGCTAGCTGCTGTATATGT+TGG - chr2_1:76212825-76212844 Msa0225880:intron 40.0%
ATGTAGGCCATTTCTTTGCA+CGG + chr2_1:76212900-76212919 None:intergenic 40.0%
GAAGAGAAGAGTTCAAACCT+TGG + chr2_1:76212940-76212959 None:intergenic 40.0%
GGTGTTTATAGCAGTAGTTC+AGG + chr2_1:76213141-76213160 None:intergenic 40.0%
!! TGGAGTATTAAGGCCTTGTT+TGG + chr2_1:76213328-76213347 None:intergenic 40.0%
TGGGTTGCATACAACATCAA+TGG + chr2_1:76213435-76213454 None:intergenic 40.0%
GATGTTGTATGCAACCCATT+AGG - chr2_1:76213437-76213456 Msa0225880:CDS 40.0%
TGCAACCCATTAGGAAAATC+TGG - chr2_1:76213446-76213465 Msa0225880:CDS 40.0%
AACCCATTAGGAAAATCTGG+TGG - chr2_1:76213449-76213468 Msa0225880:CDS 40.0%
! CACCACCAGATTTTCCTAAT+GGG + chr2_1:76213454-76213473 None:intergenic 40.0%
AATTCAACTCCATACTTGGG+AGG - chr2_1:76213518-76213537 Msa0225880:CDS 40.0%
AAACTGAGTGTCAAGTGACT+TGG + chr2_1:76213582-76213601 None:intergenic 40.0%
AGAAGAACTCGAGAAAGAGT+TGG - chr2_1:76213619-76213638 Msa0225880:CDS 40.0%
GGAAAGAGAAACTGCTGTTA+AGG - chr2_1:76213640-76213659 Msa0225880:CDS 40.0%
TCTTCATTCTCAGTCAACAC+TGG + chr2_1:76213668-76213687 None:intergenic 40.0%
GCACCTTTATATACAGAAGC+AGG - chr2_1:76213704-76213723 Msa0225880:CDS 40.0%
TGAGGAGTTCAAGATTCAGA+TGG + chr2_1:76213746-76213765 None:intergenic 40.0%
!! TCACTCATGAAAGAAGTGTC+TGG - chr2_1:76213826-76213845 Msa0225880:five_prime_UTR 40.0%
TGAGGGATAGAAAAGATGGG+TGG + chr2_1:76209675-76209694 None:intergenic 45.0%
!!! AACCTGGTTTTGGGGTTTGT+GGG + chr2_1:76209770-76209789 None:intergenic 45.0%
!!! AAACCTGGTTTTGGGGTTTG+TGG + chr2_1:76209771-76209790 None:intergenic 45.0%
! GTTCTTGTTGTGACTGCTAG+AGG - chr2_1:76210136-76210155 Msa0225880:intron 45.0%
TTCTTAGTATCCTTGGACCG+CGG - chr2_1:76210374-76210393 Msa0225880:intron 45.0%
ATGTCATGGCTGAATTGTGG+GGG - chr2_1:76210446-76210465 Msa0225880:intron 45.0%
GAATCGCTTTGCCTCATCAA+CGG + chr2_1:76211383-76211402 None:intergenic 45.0%
GGAGAATACAAGGGCAACAT+TGG + chr2_1:76211428-76211447 None:intergenic 45.0%
ACTTTAGGTCCTGGAGTTGA+TGG - chr2_1:76211484-76211503 Msa0225880:intron 45.0%
! GATGAGCATTGTTGTCGGTA+TGG - chr2_1:76211531-76211550 Msa0225880:intron 45.0%
!! TTTTTCTTCTGGCTACGAGC+GGG + chr2_1:76211607-76211626 None:intergenic 45.0%
!! CTTTTTCTTCTGGCTACGAG+CGG + chr2_1:76211608-76211627 None:intergenic 45.0%
CTACTACACCACACTACACT+CGG + chr2_1:76211893-76211912 None:intergenic 45.0%
GTGTAGTGTGGTGTAGTAGT+TGG - chr2_1:76211894-76211913 Msa0225880:CDS 45.0%
GTGTAGTAGTTGGCACTTCT+AGG - chr2_1:76211904-76211923 Msa0225880:CDS 45.0%
! TCCAGTTGTTTGGGGTACTA+CGG - chr2_1:76211950-76211969 Msa0225880:CDS 45.0%
CGTTTAGCTGGCTAAGTTGT+CGG + chr2_1:76211994-76212013 None:intergenic 45.0%
! CCATTTGGGTATCGTTTAGC+TGG + chr2_1:76212006-76212025 None:intergenic 45.0%
CCAGCTAAACGATACCCAAA+TGG - chr2_1:76212003-76212022 Msa0225880:CDS 45.0%
TCGATTTCGGTTAAGCAGTG+GGG + chr2_1:76212034-76212053 None:intergenic 45.0%
CTTCGATTTCGGTTAAGCAG+TGG + chr2_1:76212036-76212055 None:intergenic 45.0%
ATACAGGATCTGTCCCTGAA+GGG - chr2_1:76212125-76212144 Msa0225880:intron 45.0%
! AAAGGCAAAGTGTCCCTTCA+GGG + chr2_1:76212141-76212160 None:intergenic 45.0%
ATGGTGCAAGTTAGCACGAA+AGG + chr2_1:76212159-76212178 None:intergenic 45.0%
CTTTCAGGAGAAGCCGAAAA+TGG - chr2_1:76212352-76212371 Msa0225880:intron 45.0%
GAAGCCGAAAATGGGAACAA+TGG - chr2_1:76212361-76212380 Msa0225880:intron 45.0%
AAGGGATCTTGCCACATTAG+TGG - chr2_1:76212418-76212437 Msa0225880:intron 45.0%
GCCACATTAGTGGTTGCATA+TGG - chr2_1:76212428-76212447 Msa0225880:intron 45.0%
GGAAACTGCACAATTTCCAG+AGG + chr2_1:76212579-76212598 None:intergenic 45.0%
GCTTACAAGCATCATCGTGA+AGG + chr2_1:76212661-76212680 None:intergenic 45.0%
AACTCCAGTCATAAGCAGGA+CGG + chr2_1:76212736-76212755 None:intergenic 45.0%
AACCAACTCCAGTCATAAGC+AGG + chr2_1:76212740-76212759 None:intergenic 45.0%
GCACCCGTTATTGGAAAGTT+TGG - chr2_1:76212792-76212811 Msa0225880:intron 45.0%
AGAAATGGCCTACATACCCT+TGG - chr2_1:76212905-76212924 Msa0225880:intron 45.0%
! ATCCTCATCCAAGGGTATGT+AGG + chr2_1:76212916-76212935 None:intergenic 45.0%
ACCTTGGTATCCTCATCCAA+GGG + chr2_1:76212924-76212943 None:intergenic 45.0%
AACCTTGGTATCCTCATCCA+AGG + chr2_1:76212925-76212944 None:intergenic 45.0%
! AAACACCTGTAAGGCCGTTT+TGG - chr2_1:76213154-76213173 Msa0225880:CDS 45.0%
! GCACCACCAGATTTTCCTAA+TGG + chr2_1:76213455-76213474 None:intergenic 45.0%
! AAAAGCACACCTCCCAAGTA+TGG + chr2_1:76213530-76213549 None:intergenic 45.0%
!! ATACTTGGGAGGTGTGCTTT+TGG - chr2_1:76213529-76213548 Msa0225880:CDS 45.0%
TTCCCACAAACCCCAAAACC+AGG - chr2_1:76209765-76209784 Msa0225880:CDS 50.0%
AAAGCTGAAGCAGCTTCTGC+TGG - chr2_1:76209947-76209966 Msa0225880:CDS 50.0%
GCGGTCCAAGGATACTAAGA+AGG + chr2_1:76210375-76210394 None:intergenic 50.0%
!!! GTTTTGGGGGCTTGCTAATC+AGG - chr2_1:76210489-76210508 Msa0225880:intron 50.0%
ACATGCTATCATGTGACGGC+TGG - chr2_1:76211004-76211023 Msa0225880:CDS 50.0%
GCAGATAACCACCGTTGATG+AGG - chr2_1:76211369-76211388 Msa0225880:intron 50.0%
TTGGCTCCAAGTCCAAACAG+TGG + chr2_1:76211409-76211428 None:intergenic 50.0%
TTGCCCTTGTATTCTCCGGT+CGG - chr2_1:76211431-76211450 Msa0225880:intron 50.0%
TGTCCGACCGGAGAATACAA+GGG + chr2_1:76211437-76211456 None:intergenic 50.0%
CTGAGGGAAACTTTAGGTCC+TGG - chr2_1:76211475-76211494 Msa0225880:intron 50.0%
!! TAGGTCCTGGAGTTGATGGT+TGG - chr2_1:76211488-76211507 Msa0225880:intron 50.0%
!! AGGTCCTGGAGTTGATGGTT+GGG - chr2_1:76211489-76211508 Msa0225880:intron 50.0%
CGCTCGTAGCCAGAAGAAAA+AGG - chr2_1:76211606-76211625 Msa0225880:intron 50.0%
ACTGGACCACTCCAGTTGTT+TGG - chr2_1:76211940-76211959 Msa0225880:CDS 50.0%
CTGGACCACTCCAGTTGTTT+GGG - chr2_1:76211941-76211960 Msa0225880:CDS 50.0%
TGGACCACTCCAGTTGTTTG+GGG - chr2_1:76211942-76211961 Msa0225880:CDS 50.0%
AGTACCCCAAACAACTGGAG+TGG + chr2_1:76211949-76211968 None:intergenic 50.0%
TCCGTAGTACCCCAAACAAC+TGG + chr2_1:76211954-76211973 None:intergenic 50.0%
! GCTAAGTTGTCGGCTGTCAT+TGG + chr2_1:76211984-76212003 None:intergenic 50.0%
GCAGTGGGGTTTGACCATTT+GGG + chr2_1:76212020-76212039 None:intergenic 50.0%
AGCAGTGGGGTTTGACCATT+TGG + chr2_1:76212021-76212040 None:intergenic 50.0%
CATACAGGATCTGTCCCTGA+AGG - chr2_1:76212124-76212143 Msa0225880:intron 50.0%
! GAAAGGCAAAGTGTCCCTTC+AGG + chr2_1:76212142-76212161 None:intergenic 50.0%
TTCTCCCTCATACACACCTC+TGG - chr2_1:76212560-76212579 Msa0225880:intron 50.0%
GAAGGTAGCGATTCCAGTTG+CGG + chr2_1:76212643-76212662 None:intergenic 50.0%
GTCCTGCTTATGACTGGAGT+TGG - chr2_1:76212735-76212754 Msa0225880:intron 50.0%
!! TTTCCAATAACGGGTGCGAG+TGG + chr2_1:76212789-76212808 None:intergenic 50.0%
ACCCTTGGATGAGGATACCA+AGG - chr2_1:76212920-76212939 Msa0225880:intron 50.0%
! CTTGCTGTAGGTCAAAGGGA+AGG - chr2_1:76213406-76213425 Msa0225880:CDS 50.0%
TTCTTCTTCGCGACGCAATG+CGG + chr2_1:76213606-76213625 None:intergenic 50.0%
GAAGCAGCTTCTGCTGGTGT+TGG - chr2_1:76209953-76209972 Msa0225880:CDS 55.0%
!! GCTTCTGCTGGTGTTGGTTC+TGG - chr2_1:76209959-76209978 Msa0225880:CDS 55.0%
!! TCTGCTGGTGTTGGTTCTGG+TGG - chr2_1:76209962-76209981 Msa0225880:CDS 55.0%
!! GTTGGTTCTGGTGGTGGTGA+TGG - chr2_1:76209971-76209990 Msa0225880:CDS 55.0%
ATCCTTGGACCGCGGTTTCT+TGG - chr2_1:76210382-76210401 Msa0225880:intron 55.0%
TCGCTTTGCCTCATCAACGG+TGG + chr2_1:76211380-76211399 None:intergenic 55.0%
CTGTCCGACCGGAGAATACA+AGG + chr2_1:76211438-76211457 None:intergenic 55.0%
ATGGCCCAACCATCAACTCC+AGG + chr2_1:76211496-76211515 None:intergenic 55.0%
AAGCTCCCTTCACTCTGCCA+GGG - chr2_1:76211833-76211852 Msa0225880:intron 55.0%
GTGTAGAGCCGAGTGTAGTG+TGG - chr2_1:76211882-76211901 Msa0225880:CDS 55.0%
AGTGGTCCAGTAGCTGGGAA+GGG + chr2_1:76211931-76211950 None:intergenic 55.0%
ACTGGAGTGGTCCAGTAGCT+GGG + chr2_1:76211936-76211955 None:intergenic 55.0%
AACTGGAGTGGTCCAGTAGC+TGG + chr2_1:76211937-76211956 None:intergenic 55.0%
! TGTCGGCTGTCATTGGCAGA+GGG + chr2_1:76211977-76211996 None:intergenic 55.0%
! TTGTCGGCTGTCATTGGCAG+AGG + chr2_1:76211978-76211997 None:intergenic 55.0%
GACGAGTACTCATTCGGGCT+AGG + chr2_1:76212600-76212619 None:intergenic 55.0%
GGCGATTTCTCAACCGCAAC+TGG - chr2_1:76212627-76212646 Msa0225880:intron 55.0%
CCAGTCATAAGCAGGACGGT+AGG + chr2_1:76212732-76212751 None:intergenic 55.0%
CCTACCGTCCTGCTTATGAC+TGG - chr2_1:76212729-76212748 Msa0225880:intron 55.0%
GATCCACTCGCACCCGTTAT+TGG - chr2_1:76212783-76212802 Msa0225880:intron 55.0%
GGCCTACATACCCTTGGATG+AGG - chr2_1:76212911-76212930 Msa0225880:intron 55.0%
GCTCTCCAAAACGGCCTTAC+AGG + chr2_1:76213162-76213181 None:intergenic 55.0%
!! GCTGGTGTTGGTTCTGGTGG+TGG - chr2_1:76209965-76209984 Msa0225880:CDS 60.0%
GACCAAGAAACCGCGGTCCA+AGG + chr2_1:76210387-76210406 None:intergenic 60.0%
GCAAGCGGACCAAGAAACCG+CGG + chr2_1:76210394-76210413 None:intergenic 60.0%
! TTCTGGCTACGAGCGGGAAG+AGG + chr2_1:76211601-76211620 None:intergenic 60.0%
GAAGCTCCCTTCACTCTGCC+AGG - chr2_1:76211832-76211851 Msa0225880:intron 60.0%
CCAGTCCCTGGCAGAGTGAA+GGG + chr2_1:76211841-76211860 None:intergenic 60.0%
TCCAGTCCCTGGCAGAGTGA+AGG + chr2_1:76211842-76211861 None:intergenic 60.0%
ACTCTGCCAGGGACTGGACA+GGG - chr2_1:76211844-76211863 Msa0225880:intron 60.0%
GTGGTCCAGTAGCTGGGAAG+GGG + chr2_1:76211930-76211949 None:intergenic 60.0%
GAGTGGTCCAGTAGCTGGGA+AGG + chr2_1:76211932-76211951 None:intergenic 60.0%
CCCTTCACTCTGCCAGGGAC+TGG - chr2_1:76211838-76211857 Msa0225880:intron 65.0%
CACTCTGCCAGGGACTGGAC+AGG - chr2_1:76211843-76211862 Msa0225880:intron 65.0%
CTCTGCCAGGGACTGGACAG+GGG - chr2_1:76211845-76211864 Msa0225880:intron 65.0%
GCTAACCCCTGTCCAGTCCC+TGG + chr2_1:76211853-76211872 None:intergenic 65.0%
CTAGGCCCCTTCCCAGCTAC+TGG - chr2_1:76211922-76211941 Msa0225880:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 76209536 76213942 76209536 ID=Msa0225880;Name=Msa0225880
chr2_1 mRNA 76209536 76213942 76209536 ID=Msa0225880-mRNA-1;Parent=Msa0225880;Name=Msa0225880-mRNA-1;_AED=0.02;_eAED=0.02;_QI=192|1|1|1|1|1|5|185|623
chr2_1 exon 76209536 76210062 76209536 ID=Msa0225880-mRNA-1:exon:23018;Parent=Msa0225880-mRNA-1
chr2_1 exon 76210537 76210884 76210537 ID=Msa0225880-mRNA-1:exon:23017;Parent=Msa0225880-mRNA-1
chr2_1 exon 76210976 76211119 76210976 ID=Msa0225880-mRNA-1:exon:23016;Parent=Msa0225880-mRNA-1
chr2_1 exon 76211851 76212105 76211851 ID=Msa0225880-mRNA-1:exon:23015;Parent=Msa0225880-mRNA-1
chr2_1 exon 76212968 76213942 76212968 ID=Msa0225880-mRNA-1:exon:23014;Parent=Msa0225880-mRNA-1
chr2_1 five_prime_UTR 76213751 76213942 76213751 ID=Msa0225880-mRNA-1:five_prime_utr;Parent=Msa0225880-mRNA-1
chr2_1 CDS 76212968 76213750 76212968 ID=Msa0225880-mRNA-1:cds;Parent=Msa0225880-mRNA-1
chr2_1 CDS 76211851 76212105 76211851 ID=Msa0225880-mRNA-1:cds;Parent=Msa0225880-mRNA-1
chr2_1 CDS 76210976 76211119 76210976 ID=Msa0225880-mRNA-1:cds;Parent=Msa0225880-mRNA-1
chr2_1 CDS 76210537 76210884 76210537 ID=Msa0225880-mRNA-1:cds;Parent=Msa0225880-mRNA-1
chr2_1 CDS 76209721 76210062 76209721 ID=Msa0225880-mRNA-1:cds;Parent=Msa0225880-mRNA-1
chr2_1 three_prime_UTR 76209536 76209720 76209536 ID=Msa0225880-mRNA-1:three_prime_utr;Parent=Msa0225880-mRNA-1
Gene Sequence

>Msa0225880

ATGGAAGCTGTTCTTCAATCAAAAGGGTTTCTCTCTCTTCCCACAAACCCCAAAACCAGGTTTTTAAACCCATCAAATGGCTTAAAGCACAGATTTTTCTCACCAAATCCCAAAATCATTGGTGGGTTTTCTCTAACTAATAATGGGTTGGTTAATCTCAATAGTTCTACCTTAAAAGCTAATGTCTTTGATAAAAAAGACAAAAATTTGTTCATATGCAAAGCTGAAGCAGCTTCTGCTGGTGTTGGTTCTGGTGGTGGTGATGGTGAAACAGTTTTTGAGGAATCAGAAACTGAGAAACAAAAGTTTTTAGGTGTTGAAGTTATCACACTCAAGAAGATTATACCACTTGGGATGATGTTTTTTTGTATCTTGTTCAATTACACAATTCTAAGAGATACAAAAGATGTTCTTGTTGTGACTGCTAGAGGAAGTAGTGCTGAGATTATACCTTTTTTGAAAACATGGGTGAATCTTCCTATGGCTATTGGTTTTATGTTGTTGTACACAAAGTTATCTAATGTTTTGTCAAAACAGGCTCTTTTTTATTCTGTTATTGTTCCTTTTATTGCTTTTTTTGGGGCTTTTGGGTTTGTTTTGTATCCTCTTAGCAACTATATTCACCCTCAAGCATTTGCTGATAACCTTCTTAGTATCCTTGGACCGCGGTTTCTTGGTCCGCTTGCAATTATGAGAATTTGGAGTTTCTGTTTATTTTATGTCATGGCTGAATTGTGGGGGAGTGTTGTGATTTCTGTTCTGTTTTGGGGGCTTGCTAATCAGATAACCACCGTTGATGAGGCAAAGCGATTCTATCCACTGTTTGGACTTGGAGCCAATGTTGCCCTTGTATTCTCCGGTCGGACAGTCAAATACTTTTCTAGTCTGAGGGAAACTTTAGGTCCTGGAGTTGATGGTTGGGCCATCTCCCTAAAAGCAATGATGAGCATTGTTGTCGGTATGGGACTTGTTATCTGTTTCCTTTATTGGTGGGTGAACAATTACGTTCCTCTTCCCGCTCGTAGCCAGAAGAAAAAGGAGAAGCCGAAAATGGGAACAATGGAGAGCTTGAAGTTCTTGATGTCTTCAAGATATATAAGGGATCTTGCCACATTAGTGGTTGCATATGGAATAAGCATTAATCTTGTTGAAGTTACATGGAAATCAAAGCTCAAAGCTCAGTTTCCTAGCCCGAATGAGTACTCGTCTTTTATGGGCGATTTCTCAACCGCAACTGGAATCGCTACCTTCACGATGATGCTTGTAAGCCAATTTATATTCAACAAATATGGATGGGGAGTTGCTGCGACGATCACACCTACCGTCCTGCTTATGACTGGAGTTGGTTTCTTTTCTCTCATATTATTCGGCGATCCACTCGCACCCGTTATTGGAAAGTTTGGATTGACTCCATTGCTAGCTGCTGTATATGTTGGTGCCTTGCAAAACATATTCAGCAAGAGTGCCAAGTACAGTTTATTTGATCCGTGCAAAGAAATGGCCTACATACCCTTGGATGAGGATACCAAGGTCAAAGGGAAGGCAGCCATTGATGTTGTATGCAACCCATTAGGAAAATCTGGTGGTGCTCTAATTCAGCAGTTCATGATCCTAACTTTTGGTTCACTAGCTAATTCAACTCCATACTTGGGAGGTGTGCTTTTGGTGATTGTTCTTGCATGGTTAGCAGCAGCCAAGTCACTTGACACTCAGTTTACCGCATTGCGTCGCGAAGAAGAACTCGAGAAAGAGTTGGAAAGAGAAACTGCTGTTAAGGTACCAGTGTTGACTGAGAATGAAGATGAAGATGGTTCTGTTGCACCTTTATATACAGAAGCAGGTGACTCCTTCATTAGTCCATCTGAATCTTGA

Protein sequence

>Msa0225880

MEAVLQSKGFLSLPTNPKTRFLNPSNGLKHRFFSPNPKIIGGFSLTNNGLVNLNSSTLKANVFDKKDKNLFICKAEAASAGVGSGGGDGETVFEESETEKQKFLGVEVITLKKIIPLGMMFFCILFNYTILRDTKDVLVVTARGSSAEIIPFLKTWVNLPMAIGFMLLYTKLSNVLSKQALFYSVIVPFIAFFGAFGFVLYPLSNYIHPQAFADNLLSILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGLANQITTVDEAKRFYPLFGLGANVALVFSGRTVKYFSSLRETLGPGVDGWAISLKAMMSIVVGMGLVICFLYWWVNNYVPLPARSQKKKEKPKMGTMESLKFLMSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLVSQFIFNKYGWGVAATITPTVLLMTGVGFFSLILFGDPLAPVIGKFGLTPLLAAVYVGALQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKGKAAIDVVCNPLGKSGGALIQQFMILTFGSLANSTPYLGGVLLVIVLAWLAAAKSLDTQFTALRREEELEKELERETAVKVPVLTENEDEDGSVAPLYTEAGDSFISPSES*