AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0877890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0877890 MtrunA17_Chr6g0460381 81.500 200 28 2 1 194 2 198 2.07e-86 253
Msa0877890 MtrunA17_Chr6g0460461 59.859 142 49 1 1 142 1 134 2.42e-39 134
Msa0877890 MtrunA17_Chr6g0460411 79.487 78 16 0 1 78 1 78 1.43e-38 132
Msa0877890 MtrunA17_Chr4g0040501 40.449 89 49 1 1 89 3 87 4.47e-14 69.3
Msa0877890 MtrunA17_Chr2g0333221 35.345 116 69 1 2 117 70 179 1.10e-13 68.6
Msa0877890 MtrunA17_Chr2g0282741 37.895 95 51 2 1 95 3 89 1.37e-13 67.8
Msa0877890 MtrunA17_Chr2g0282761 36.957 92 53 2 1 92 3 89 3.50e-13 66.6
Msa0877890 MtrunA17_Chr2g0324921 35.238 105 53 2 1 94 3 103 3.95e-12 63.9
Msa0877890 MtrunA17_Chr4g0061421 37.719 114 64 3 3 115 9 116 4.08e-12 64.3
Msa0877890 MtrunA17_Chr7g0263971 47.059 68 32 1 2 69 369 432 5.36e-12 63.5
Msa0877890 MtrunA17_Chr4g0021141 38.235 68 37 1 2 69 22 84 6.12e-12 60.5
Msa0877890 MtrunA17_Chr4g0006391 42.029 69 36 1 1 69 3 67 6.33e-12 63.2
Msa0877890 MtrunA17_Chr7g0242951 44.928 69 32 2 1 69 26 88 1.35e-11 62.8
Msa0877890 MtrunA17_Chr3g0138471 43.077 65 33 1 1 65 3 63 1.74e-11 62.0
Msa0877890 MtrunA17_Chr7g0271891 41.791 67 38 1 3 69 17 82 2.06e-11 59.7
Msa0877890 MtrunA17_Chr3g0123861 43.243 74 36 1 2 75 82 149 2.29e-11 62.0
Msa0877890 MtrunA17_Chr8g0344721 46.154 65 34 1 2 65 10 74 9.61e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0877890 AT2G41000.1 45.128 195 87 4 1 188 2 183 3.65e-43 143
Msa0877890 AT2G41000.2 43.085 188 79 5 1 177 2 172 7.48e-34 120
Msa0877890 AT4G28480.2 35.789 95 57 1 1 95 3 93 2.72e-14 70.1
Msa0877890 AT4G28480.1 35.789 95 57 1 1 95 3 93 3.46e-14 70.1
Msa0877890 AT5G03160.1 51.471 68 29 1 2 69 370 433 9.68e-14 69.3
Msa0877890 AT5G25530.2 37.778 90 49 2 1 90 3 85 1.92e-13 67.8
Msa0877890 AT2G20560.1 39.773 88 49 1 1 88 3 86 3.35e-13 67.4
Msa0877890 AT1G80030.4 39.560 91 49 1 2 92 75 159 3.91e-13 67.4
Msa0877890 AT1G80030.2 39.560 91 49 1 2 92 75 159 4.14e-13 67.4
Msa0877890 AT1G80030.3 39.560 91 49 1 2 92 75 159 4.14e-13 67.4
Msa0877890 AT1G80030.1 39.560 91 49 1 2 92 75 159 4.14e-13 67.4
Msa0877890 AT5G01390.3 46.970 66 31 1 1 66 3 64 5.74e-13 65.5
Msa0877890 AT5G01390.4 46.970 66 31 1 1 66 3 64 1.01e-12 65.1
Msa0877890 AT3G08910.1 43.478 69 35 1 1 69 3 67 1.34e-12 65.5
Msa0877890 AT5G01390.2 46.970 66 31 1 1 66 3 64 1.38e-12 65.1
Msa0877890 AT5G16650.1 42.029 69 35 1 2 70 11 74 1.39e-12 62.4
Msa0877890 AT5G01390.1 46.970 66 31 1 1 66 3 64 1.60e-12 65.5
Msa0877890 AT1G10350.1 31.933 119 68 3 1 119 3 108 2.32e-12 65.1
Msa0877890 AT2G33735.1 44.118 68 33 1 2 69 22 84 2.43e-12 61.6
Msa0877890 AT2G33735.2 44.118 68 33 1 2 69 22 84 2.43e-12 61.6
Msa0877890 AT2G22360.1 40.659 91 47 2 2 92 86 169 3.06e-12 64.7
Msa0877890 AT5G16650.2 42.029 69 35 1 2 70 11 74 3.72e-12 62.0
Msa0877890 AT4G39960.1 42.222 90 42 3 2 91 85 164 5.09e-12 64.3
Msa0877890 AT4G39960.2 42.222 90 42 3 2 91 85 164 5.09e-12 64.3
Msa0877890 AT1G59725.1 34.066 91 54 2 1 91 3 87 6.30e-12 63.5
Msa0877890 AT1G56300.1 40.299 67 39 1 3 69 14 79 1.64e-11 60.1
Msa0877890 AT1G56300.2 40.299 67 39 1 3 69 14 79 2.10e-11 58.9
Msa0877890 AT5G25530.1 34.694 98 49 3 1 90 3 93 7.09e-11 60.5

Find 103 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATCAAACCACCTAAATT+TGG 0.145054 6_1:+18073254 None:intergenic
ATTCAAGTGGAGAATCTTTA+TGG 0.183653 6_1:-18074295 Msa0877890:CDS
TGCTTTCTCAATGGTGTTCA+TGG 0.193983 6_1:+18073829 None:intergenic
AGTCACGCTGTCGTAGATTT+AGG 0.208884 6_1:-18073504 Msa0877890:three_prime_UTR
ATGGATCATTACAAGGTTCT+AGG 0.255976 6_1:-18077460 Msa0877890:CDS
ATTGGATTAAATGCAGTTAA+TGG 0.257859 6_1:-18073479 Msa0877890:three_prime_UTR
GTTAGCATGTATTCCATATA+CGG 0.264525 6_1:-18073544 Msa0877890:three_prime_UTR
GATGATTGAGAATGCTTATC+TGG 0.265847 6_1:+18077370 None:intergenic
TTATGGAAGATGCAAAATTC+TGG 0.280003 6_1:-18074278 Msa0877890:CDS
ATAATGGAAGCTTTCAGTTT+TGG 0.281002 6_1:-18073703 Msa0877890:three_prime_UTR
GTATTCCATATACGGGATAT+TGG 0.286878 6_1:-18073536 Msa0877890:three_prime_UTR
CGAAACCCAATCCCAAATTT+AGG 0.300897 6_1:-18073266 Msa0877890:three_prime_UTR
AGTGGGAGTGGGAGTGGGAG+TGG 0.303650 6_1:-18077145 Msa0877890:CDS
AAGTAATTCAATGTGTAAAA+TGG 0.312093 6_1:-18073065 Msa0877890:three_prime_UTR
AGTGGGAGTGGGAGTGGGAG+TGG 0.316616 6_1:-18077151 Msa0877890:CDS
AGAATCCAATATCCCGTATA+TGG 0.336125 6_1:+18073531 None:intergenic
GGGAGTGGGAGTGGTTATTA+TGG 0.337834 6_1:-18077136 Msa0877890:CDS
GGGTCTGCTGGTGGTGGTGG+TGG 0.350430 6_1:-18077106 Msa0877890:CDS
GAAATTAGATTTGTGGAAGT+TGG 0.350924 6_1:-18073219 Msa0877890:three_prime_UTR
GGTAGAAGTGGGAGTGGGAG+TGG 0.353741 6_1:-18077157 Msa0877890:CDS
TCTCAGTATAGTTATGGATA+TGG 0.357769 6_1:-18077178 Msa0877890:CDS
TGCAACAATTCGATTTAAAC+AGG 0.362009 6_1:-18077329 Msa0877890:CDS
AGTGGGTCTGCTGGTGGTGG+TGG 0.368130 6_1:-18077109 Msa0877890:CDS
TCATCAAACCACCTAAATTT+GGG 0.369666 6_1:+18073255 None:intergenic
ATATTACTGAGGTTGAAATC+TGG 0.370789 6_1:-18073366 Msa0877890:three_prime_UTR
TACCAATCTCAGTATAGTTA+TGG 0.371369 6_1:-18077184 Msa0877890:CDS
CGCTGGCGAGCAGGTGGTGG+TGG 0.384046 6_1:-18077250 Msa0877890:CDS
AACCACCTAAATTTGGGATT+GGG 0.388063 6_1:+18073261 None:intergenic
ATAACCTGATGGAAGATTCT+TGG 0.389902 6_1:-18074351 Msa0877890:intron
TTCTTGGCCAGAGCTATATT+AGG 0.391764 6_1:-18074335 Msa0877890:CDS
GTCACGCTGTCGTAGATTTA+GGG 0.397873 6_1:-18073503 Msa0877890:three_prime_UTR
AAACCACCTAAATTTGGGAT+TGG 0.399641 6_1:+18073260 None:intergenic
GTTTAAGAAATAGTGAATAA+TGG 0.402577 6_1:-18073719 Msa0877890:three_prime_UTR
TTTAATTACCGCTGGCGAGC+AGG 0.423906 6_1:-18077259 Msa0877890:CDS
ATCCATAACTATACTGAGAT+TGG 0.424135 6_1:+18077182 None:intergenic
TGATCAAGAACGAATGGTTC+AGG 0.432345 6_1:-18073418 Msa0877890:three_prime_UTR
TATGGAAGATGCAAAATTCT+GGG 0.433386 6_1:-18074277 Msa0877890:CDS
GTGGGAGTGGGAGTGGGAGT+GGG 0.436067 6_1:-18077150 Msa0877890:CDS
GGAGGAAGTGCCGGTGCTGC+CGG 0.439766 6_1:-18077229 Msa0877890:CDS
ACAGGTTTCTGAAGCGTATG+AGG 0.444122 6_1:-18077311 Msa0877890:CDS
AGAAGTGGGTCTGCTGGTGG+TGG 0.454558 6_1:-18077112 Msa0877890:CDS
TGGCGAGCAGGTGGTGGTGG+AGG 0.467657 6_1:-18077247 Msa0877890:CDS
CTGTCGTAGATTTAGGGGAT+TGG 0.468073 6_1:-18073497 Msa0877890:three_prime_UTR
GTAGAAGTGGGAGTGGGAGT+GGG 0.470848 6_1:-18077156 Msa0877890:CDS
AGTCCGATCTTGATCGTGTT+CGG 0.471830 6_1:-18073341 Msa0877890:three_prime_UTR
TTACAATTGCACAAGTAACT+AGG 0.480406 6_1:+18073575 None:intergenic
ACCATTCGTTCTTGATCAGA+TGG 0.486440 6_1:+18073423 None:intergenic
AGTTATGGATATGGTAGAAG+TGG 0.488178 6_1:-18077169 Msa0877890:CDS
TACCGCTGGCGAGCAGGTGG+TGG 0.488940 6_1:-18077253 Msa0877890:CDS
GATGGCTGAAATTAGATTTG+TGG 0.492102 6_1:-18073226 Msa0877890:three_prime_UTR
AGATTGGTAATAATAGTTAC+CGG 0.500641 6_1:+18077198 None:intergenic
AGTTAATGGTGGGTGCAGTC+AGG 0.503970 6_1:-18073465 Msa0877890:three_prime_UTR
TTGCAATTTGCCTCACTAAG+TGG 0.506033 6_1:-18073612 Msa0877890:three_prime_UTR
TATGGTAGAAGTGGGTCTGC+TGG 0.512264 6_1:-18077118 Msa0877890:CDS
CTCCATCATGGATCATTACA+AGG 0.515879 6_1:-18077467 None:intergenic
GGCACTTCCACCGGCAGCAC+CGG 0.517415 6_1:+18077219 None:intergenic
TGGATCATTACAAGGTTCTA+GGG 0.519987 6_1:-18077459 Msa0877890:CDS
ACTGTTGCATGACAATCATA+TGG 0.522342 6_1:+18073188 None:intergenic
CGTCCGAACACGATCAAGAT+CGG 0.529128 6_1:+18073338 None:intergenic
GGTGGTGGTGGAGGAAGTGC+CGG 0.533006 6_1:-18077238 Msa0877890:CDS
CATCGCACCTAATATAGCTC+TGG 0.533032 6_1:+18074328 None:intergenic
GGTTTCGTTGCAGTCAAAAG+TGG 0.534299 6_1:+18073282 None:intergenic
CAAATTTAGGTGGTTTGATG+AGG 0.540406 6_1:-18073253 Msa0877890:three_prime_UTR
GTGGTTTGATGAGGATCTGA+TGG 0.541368 6_1:-18073244 Msa0877890:three_prime_UTR
TACAAGTATACTTTCTACAT+TGG 0.542772 6_1:+18073109 None:intergenic
GGATTAAATGCAGTTAATGG+TGG 0.547941 6_1:-18073476 Msa0877890:three_prime_UTR
TACAATTGCACAAGTAACTA+GGG 0.549039 6_1:+18073576 None:intergenic
ATAGTTACCGGCACTTCCAC+CGG 0.551666 6_1:+18077210 None:intergenic
GGTGCTGCCGGTGGAAGTGC+CGG 0.554174 6_1:-18077217 Msa0877890:CDS
TGAAGCGTATGAGGTTCTCA+TGG 0.556176 6_1:-18077302 Msa0877890:CDS
AGTGGTTATTATGGTAGAAG+TGG 0.556969 6_1:-18077127 Msa0877890:CDS
TCACGCTGTCGTAGATTTAG+GGG 0.558667 6_1:-18073502 Msa0877890:three_prime_UTR
CAGAGCTATATTAGGTGCGA+TGG 0.564743 6_1:-18074327 Msa0877890:CDS
TTAGCATGTATTCCATATAC+GGG 0.567478 6_1:-18073543 Msa0877890:three_prime_UTR
GCGCTGAGTTTAATTACCGC+TGG 0.568343 6_1:-18077267 Msa0877890:CDS
ATGGTTGTTGTTGATTCAAG+TGG 0.568671 6_1:-18074308 Msa0877890:CDS
GGATATGGTAGAAGTGGGAG+TGG 0.570275 6_1:-18077163 Msa0877890:CDS
GAGAGCAGATAACTGAATCA+AGG 0.571592 6_1:+18073773 None:intergenic
ATTGCACAAGTAACTAGGGA+AGG 0.574247 6_1:+18073580 None:intergenic
GGAAGTGCCGGTGCTGCCGG+TGG 0.574627 6_1:-18077226 Msa0877890:CDS
GTGGTTATTATGGTAGAAGT+GGG 0.575671 6_1:-18077126 Msa0877890:CDS
GTTTCGTTGCAGTCAAAAGT+GGG 0.577550 6_1:+18073283 None:intergenic
GTTATGGATATGGTAGAAGT+GGG 0.577613 6_1:-18077168 Msa0877890:CDS
ATGAGGTTCTCATGGATGAT+CGG 0.580960 6_1:-18077294 Msa0877890:CDS
GGTAGAAGTGGGTCTGCTGG+TGG 0.582664 6_1:-18077115 Msa0877890:CDS
TTCTTGATCAGATGGTTCAG+AGG 0.589867 6_1:+18073431 None:intergenic
AATTACCGCTGGCGAGCAGG+TGG 0.591918 6_1:-18077256 Msa0877890:CDS
AACCCAATCCCAAATTTAGG+TGG 0.593664 6_1:-18073263 Msa0877890:three_prime_UTR
ACCATCTGATCAAGAACGAA+TGG 0.594416 6_1:-18073424 Msa0877890:three_prime_UTR
CACCACCACCTGCTCGCCAG+CGG 0.597692 6_1:+18077251 None:intergenic
GGAAGAGAGACCACTTAGTG+AGG 0.603834 6_1:+18073602 None:intergenic
ATGGAAGATGCAAAATTCTG+GGG 0.612791 6_1:-18074276 Msa0877890:intron
CATTCGAGTGGCAAGTGAAG+CGG 0.614106 6_1:+18073751 None:intergenic
GGGTGTAGTCATCATGCAGT+CGG 0.626825 6_1:+18073303 None:intergenic
CGATCTTGATCGTGTTCGGA+CGG 0.628210 6_1:-18073337 Msa0877890:three_prime_UTR
TGATTGTCATGCAACAGTCG+AGG 0.633986 6_1:-18073183 Msa0877890:three_prime_UTR
GCAAATTGCAAGAGACAACA+AGG 0.635009 6_1:+18073624 None:intergenic
TCAGCAGTACAAGTACAAGT+AGG 0.639153 6_1:+18073035 None:intergenic
GATTAAATGCAGTTAATGGT+GGG 0.641786 6_1:-18073475 Msa0877890:three_prime_UTR
TTGCACAAGTAACTAGGGAA+GGG 0.651100 6_1:+18073581 None:intergenic
GATATGGTAGAAGTGGGAGT+GGG 0.662980 6_1:-18077162 Msa0877890:CDS
AACGTGAAGAAGCATTCGAG+TGG 0.683317 6_1:+18073739 None:intergenic
GCATGGATATAGTATATGTG+CGG 0.738124 6_1:-18073671 Msa0877890:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATAAATACTGATTTT+TGG - chr6_1:18073611-18073630 Msa0877890:three_prime_UTR 10.0%
!!! TTTTATAAATACTGATTTTT+GGG - chr6_1:18073612-18073631 Msa0877890:three_prime_UTR 10.0%
!! TTTAGTAAAAATGTTATATT+TGG + chr6_1:18074627-18074646 None:intergenic 10.0%
!!! AATTATTGACTAATTAATTT+GGG - chr6_1:18074714-18074733 Msa0877890:intron 10.0%
!!! TTTTTTATTTAATATTACTG+AGG - chr6_1:18077086-18077105 Msa0877890:CDS 10.0%
!!! TTTATAAATACTGATTTTTG+GGG - chr6_1:18073613-18073632 Msa0877890:three_prime_UTR 15.0%
!!! ATTTTTACTAAAGATCAAAA+TGG - chr6_1:18074635-18074654 Msa0877890:intron 15.0%
!!! GAATTATTGACTAATTAATT+TGG - chr6_1:18074713-18074732 Msa0877890:intron 15.0%
!!! TCATATCTCATTTAATTTAA+TGG - chr6_1:18074816-18074835 Msa0877890:intron 15.0%
!! AATAATATTACAAAAGTGAA+AGG + chr6_1:18076587-18076606 None:intergenic 15.0%
!!! ATAAATTTGGGGTTTTTATT+CGG - chr6_1:18073391-18073410 Msa0877890:three_prime_UTR 20.0%
!!! TATCTCATTTAATTTAATGG+TGG - chr6_1:18074819-18074838 Msa0877890:intron 20.0%
!!! TTTTACAAGATTTTTGTTCT+TGG - chr6_1:18075188-18075207 Msa0877890:intron 20.0%
!! ATTTGAGCATCAATAATTTA+AGG + chr6_1:18076028-18076047 None:intergenic 20.0%
!! TATCATTGAGAATAAACAAA+AGG + chr6_1:18076331-18076350 None:intergenic 20.0%
!! GTTTAAGAAATAGTGAATAA+TGG - chr6_1:18076744-18076763 Msa0877890:intron 20.0%
!! AAGTAATTCAATGTGTAAAA+TGG - chr6_1:18077398-18077417 Msa0877890:CDS 20.0%
!! AATTGTTGCATTTTCTCTAA+CGG + chr6_1:18073124-18073143 None:intergenic 25.0%
!! AGATTGGTAATAATAGTTAC+CGG + chr6_1:18073268-18073287 None:intergenic 25.0%
!! TGTATTAGCATAAACTTGTT+TGG - chr6_1:18073767-18073786 Msa0877890:three_prime_UTR 25.0%
! AGAACTTATGATATGTTCAT+GGG - chr6_1:18073850-18073869 Msa0877890:intron 25.0%
! AATAAGATGTTTATCCAAAC+AGG - chr6_1:18074031-18074050 Msa0877890:intron 25.0%
! ATAAGATGTTTATCCAAACA+GGG - chr6_1:18074032-18074051 Msa0877890:intron 25.0%
! ACTTATGAAAGCTTATAACA+TGG + chr6_1:18074105-18074124 None:intergenic 25.0%
!!! TAAGTTTTATGAGACTGTTT+AGG + chr6_1:18074131-18074150 None:intergenic 25.0%
! TCTCATAAAACTTAGTCTAT+AGG - chr6_1:18074137-18074156 Msa0877890:intron 25.0%
!!! ACTGAAGTGTCTTTTAATTT+GGG - chr6_1:18074393-18074412 Msa0877890:intron 25.0%
! TAAAGATCAAAATGGAAAAC+AGG - chr6_1:18074643-18074662 Msa0877890:intron 25.0%
! AAAGATCAAAATGGAAAACA+GGG - chr6_1:18074644-18074663 Msa0877890:intron 25.0%
! TTCAGAATCATATGCATATT+TGG - chr6_1:18075014-18075033 Msa0877890:intron 25.0%
! AAAAATCTTGTAAAATCGTC+AGG + chr6_1:18075183-18075202 None:intergenic 25.0%
! TGCAATATCAAAATGAAACT+GGG + chr6_1:18075478-18075497 None:intergenic 25.0%
! ATGCAATATCAAAATGAAAC+TGG + chr6_1:18075479-18075498 None:intergenic 25.0%
! AACCAAATTTAAATGAGAAC+AGG - chr6_1:18075754-18075773 Msa0877890:intron 25.0%
! AACCTGTTCTCATTTAAATT+TGG + chr6_1:18075759-18075778 None:intergenic 25.0%
! TTATTGTGAAGATGATAGAA+CGG + chr6_1:18075826-18075845 None:intergenic 25.0%
!! ATATTTTTCTGATAACCTGA+TGG - chr6_1:18076101-18076120 Msa0877890:intron 25.0%
! CAACTCAAAATTGAAACAAA+GGG + chr6_1:18076283-18076302 None:intergenic 25.0%
! TCAACTCAAAATTGAAACAA+AGG + chr6_1:18076284-18076303 None:intergenic 25.0%
!!! AATTTTGAGTTGATATCAGT+TGG - chr6_1:18076291-18076310 Msa0877890:intron 25.0%
! CTGAAAAATATAATCATCTG+CGG + chr6_1:18076430-18076449 None:intergenic 25.0%
! AGAAAGAAAAACTGTCAATA+TGG + chr6_1:18076468-18076487 None:intergenic 25.0%
! ATTGGATTAAATGCAGTTAA+TGG - chr6_1:18076984-18077003 Msa0877890:intron 25.0%
! TACAAGTATACTTTCTACAT+TGG + chr6_1:18077357-18077376 None:intergenic 25.0%
TGCAACAATTCGATTTAAAC+AGG - chr6_1:18073134-18073153 Msa0877890:three_prime_UTR 30.0%
TACCAATCTCAGTATAGTTA+TGG - chr6_1:18073279-18073298 Msa0877890:three_prime_UTR 30.0%
ATCCATAACTATACTGAGAT+TGG + chr6_1:18073284-18073303 None:intergenic 30.0%
TCTCAGTATAGTTATGGATA+TGG - chr6_1:18073285-18073304 Msa0877890:three_prime_UTR 30.0%
! GGTTTTTATTCGGATTTTGA+CGG - chr6_1:18073401-18073420 Msa0877890:three_prime_UTR 30.0%
AATTTAACTGAGACCCTATT+TGG - chr6_1:18073701-18073720 Msa0877890:three_prime_UTR 30.0%
GAGAACTTATGATATGTTCA+TGG - chr6_1:18073849-18073868 Msa0877890:intron 30.0%
TTTCAAAACAGACAATACCT+TGG - chr6_1:18074207-18074226 Msa0877890:intron 30.0%
TTCAAAACAGACAATACCTT+GGG - chr6_1:18074208-18074227 Msa0877890:intron 30.0%
ATTTGAACATTGACACTAGA+AGG - chr6_1:18074253-18074272 Msa0877890:intron 30.0%
!! CACTGAAGTGTCTTTTAATT+TGG - chr6_1:18074392-18074411 Msa0877890:intron 30.0%
TGGACAATATCTCATAAAAG+TGG - chr6_1:18074508-18074527 Msa0877890:intron 30.0%
!! GAAGTCTTTCGTTTTATTCT+TGG - chr6_1:18074541-18074560 Msa0877890:intron 30.0%
! TGCTATCTTTTCATGAATGT+TGG - chr6_1:18074591-18074610 Msa0877890:intron 30.0%
AAGATCAAAATGGAAAACAG+GGG - chr6_1:18074645-18074664 Msa0877890:intron 30.0%
TCAATAATTCAAACTCATGC+TGG + chr6_1:18074703-18074722 None:intergenic 30.0%
! ACAAATACCATTTTCACCAT+TGG - chr6_1:18074779-18074798 Msa0877890:intron 30.0%
TATTGATCCAATGGTGAAAA+TGG + chr6_1:18074789-18074808 None:intergenic 30.0%
GATATGACTTATTGATCCAA+TGG + chr6_1:18074798-18074817 None:intergenic 30.0%
GGTGGAATTAATTTATGCAA+TGG - chr6_1:18074837-18074856 Msa0877890:intron 30.0%
CAAATTAATGGCCAATTCTA+TGG + chr6_1:18074904-18074923 None:intergenic 30.0%
ACTTTCCTGATGCAAATTAA+TGG + chr6_1:18074916-18074935 None:intergenic 30.0%
ATTTGCATCAGGAAAGTTAA+AGG - chr6_1:18074919-18074938 Msa0877890:intron 30.0%
!! TATTAAGTTGACTACACTTG+TGG + chr6_1:18074952-18074971 None:intergenic 30.0%
!! TAGCTTTAAAGATCAGTCTT+GGG + chr6_1:18075438-18075457 None:intergenic 30.0%
! TGCATGGACTATTTACATTA+TGG - chr6_1:18075620-18075639 Msa0877890:intron 30.0%
! GCATGGACTATTTACATTAT+GGG - chr6_1:18075621-18075640 Msa0877890:intron 30.0%
! ACATTCAATGATTTCGCTTT+TGG + chr6_1:18075675-18075694 None:intergenic 30.0%
TGCAAATATTGAGATACTTC+AGG - chr6_1:18075707-18075726 Msa0877890:intron 30.0%
AAATATGTCACACTAATGCA+GGG + chr6_1:18075925-18075944 None:intergenic 30.0%
AAAATATGTCACACTAATGC+AGG + chr6_1:18075926-18075945 None:intergenic 30.0%
ATTCAAGTGGAGAATCTTTA+TGG - chr6_1:18076168-18076187 Msa0877890:intron 30.0%
TTATGGAAGATGCAAAATTC+TGG - chr6_1:18076185-18076204 Msa0877890:intron 30.0%
TATGGAAGATGCAAAATTCT+GGG - chr6_1:18076186-18076205 Msa0877890:intron 30.0%
GCTGCACATAAAATTAACAT+AGG + chr6_1:18076547-18076566 None:intergenic 30.0%
! ATACACTTTTGCTTTCTCAA+TGG + chr6_1:18076646-18076665 None:intergenic 30.0%
!! ATAATGGAAGCTTTCAGTTT+TGG - chr6_1:18076760-18076779 Msa0877890:intron 30.0%
! TAATGGAAGCTTTCAGTTTT+GGG - chr6_1:18076761-18076780 Msa0877890:intron 30.0%
TACAATTGCACAAGTAACTA+GGG + chr6_1:18076890-18076909 None:intergenic 30.0%
TTACAATTGCACAAGTAACT+AGG + chr6_1:18076891-18076910 None:intergenic 30.0%
GTTAGCATGTATTCCATATA+CGG - chr6_1:18076919-18076938 Msa0877890:intron 30.0%
TTAGCATGTATTCCATATAC+GGG - chr6_1:18076920-18076939 Msa0877890:intron 30.0%
GATTAAATGCAGTTAATGGT+GGG - chr6_1:18076988-18077007 Msa0877890:intron 30.0%
ATATTACTGAGGTTGAAATC+TGG - chr6_1:18077097-18077116 Msa0877890:CDS 30.0%
TCATCAAACCACCTAAATTT+GGG + chr6_1:18077211-18077230 None:intergenic 30.0%
GAAATTAGATTTGTGGAAGT+TGG - chr6_1:18077244-18077263 Msa0877890:CDS 30.0%
ATGGATCATTACAAGGTTCT+AGG - chr6_1:18073003-18073022 Msa0877890:three_prime_UTR 35.0%
TGGATCATTACAAGGTTCTA+GGG - chr6_1:18073004-18073023 Msa0877890:three_prime_UTR 35.0%
GATGATTGAGAATGCTTATC+TGG + chr6_1:18073096-18073115 None:intergenic 35.0%
AGTTATGGATATGGTAGAAG+TGG - chr6_1:18073294-18073313 Msa0877890:three_prime_UTR 35.0%
GTTATGGATATGGTAGAAGT+GGG - chr6_1:18073295-18073314 Msa0877890:three_prime_UTR 35.0%
AGTGGTTATTATGGTAGAAG+TGG - chr6_1:18073336-18073355 Msa0877890:three_prime_UTR 35.0%
GTGGTTATTATGGTAGAAGT+GGG - chr6_1:18073337-18073356 Msa0877890:three_prime_UTR 35.0%
!!! GTGGTTTTGGGGATAAATTT+GGG - chr6_1:18073379-18073398 Msa0877890:three_prime_UTR 35.0%
!!! TGGTTTTGGGGATAAATTTG+GGG - chr6_1:18073380-18073399 Msa0877890:three_prime_UTR 35.0%
!! TTTTGGGGAAGATTTGTGTT+TGG - chr6_1:18073628-18073647 Msa0877890:three_prime_UTR 35.0%
CTCACTGTATTTGATTCACT+AGG - chr6_1:18073674-18073693 Msa0877890:three_prime_UTR 35.0%
TGAGACCCTATTTGGATAAA+CGG - chr6_1:18073709-18073728 Msa0877890:three_prime_UTR 35.0%
ATAGGCCGTTTATCCAAATA+GGG + chr6_1:18073717-18073736 None:intergenic 35.0%
TATAGGCCGTTTATCCAAAT+AGG + chr6_1:18073718-18073737 None:intergenic 35.0%
TTCACAAGTCCTCCAATATA+TGG + chr6_1:18074058-18074077 None:intergenic 35.0%
TCGATCCAACAAAATTGTGA+GGG - chr6_1:18074174-18074193 Msa0877890:intron 35.0%
AAAGACACTTCAGTGAATTG+AGG + chr6_1:18074387-18074406 None:intergenic 35.0%
TTAGGTGAAATGTGTATCAG+TGG + chr6_1:18074453-18074472 None:intergenic 35.0%
TGCTCGCATATGATTTAACT+TGG - chr6_1:18074488-18074507 Msa0877890:intron 35.0%
!! GTCTTTCGTTTTATTCTTGG+TGG - chr6_1:18074544-18074563 Msa0877890:intron 35.0%
TATAACTAATACGATGCTGC+AGG + chr6_1:18074675-18074694 None:intergenic 35.0%
GTGAAAATGGTATTTGTGCA+TGG + chr6_1:18074776-18074795 None:intergenic 35.0%
!! ATTGGCCATTAATTTGCATC+AGG - chr6_1:18074908-18074927 Msa0877890:intron 35.0%
TGTTCCATTCTCAAACATGT+TGG - chr6_1:18074986-18075005 Msa0877890:intron 35.0%
AAAGCGAAGACTTAAAGACT+GGG + chr6_1:18075061-18075080 None:intergenic 35.0%
TTATTATTGTGAGGGAAGTG+AGG + chr6_1:18075160-18075179 None:intergenic 35.0%
TCGTCAGGTTATTATTGTGA+GGG + chr6_1:18075168-18075187 None:intergenic 35.0%
ATCGTCAGGTTATTATTGTG+AGG + chr6_1:18075169-18075188 None:intergenic 35.0%
! ACTGTATAGACGTTGACTAA+AGG + chr6_1:18075248-18075267 None:intergenic 35.0%
! TTTTTCTCCATAGTTCTCCA+TGG + chr6_1:18075286-18075305 None:intergenic 35.0%
!! CTAGCTTTAAAGATCAGTCT+TGG + chr6_1:18075439-18075458 None:intergenic 35.0%
AATTCCGACATATTTGACCA+TGG + chr6_1:18075557-18075576 None:intergenic 35.0%
! GGTCAAATATGTCGGAATTT+TGG - chr6_1:18075558-18075577 Msa0877890:intron 35.0%
ATGAGACTCTCTATCATGAT+CGG + chr6_1:18075871-18075890 None:intergenic 35.0%
!! AGTGGTGGGTATAGTAAATA+TGG + chr6_1:18075991-18076010 None:intergenic 35.0%
ATATTTACTATACCCACCAC+TGG - chr6_1:18075990-18076009 Msa0877890:intron 35.0%
ATAACCTGATGGAAGATTCT+TGG - chr6_1:18076112-18076131 Msa0877890:intron 35.0%
!! ATGGTTGTTGTTGATTCAAG+TGG - chr6_1:18076155-18076174 Msa0877890:intron 35.0%
ATGGAAGATGCAAAATTCTG+GGG - chr6_1:18076187-18076206 Msa0877890:intron 35.0%
!!! AAAATTCTGGGGTAAGCTTT+TGG - chr6_1:18076198-18076217 Msa0877890:intron 35.0%
! ATCAGTTGGTTCATATGTAC+TGG - chr6_1:18076305-18076324 Msa0877890:intron 35.0%
TGTTTCATCGTTTCTTGTCA+TGG - chr6_1:18076395-18076414 Msa0877890:intron 35.0%
! AATGGAAGCTTTCAGTTTTG+GGG - chr6_1:18076762-18076781 Msa0877890:intron 35.0%
GCATGGATATAGTATATGTG+CGG - chr6_1:18076792-18076811 Msa0877890:intron 35.0%
GTATTCCATATACGGGATAT+TGG - chr6_1:18076927-18076946 Msa0877890:intron 35.0%
AGAATCCAATATCCCGTATA+TGG + chr6_1:18076935-18076954 None:intergenic 35.0%
GGATTAAATGCAGTTAATGG+TGG - chr6_1:18076987-18077006 Msa0877890:intron 35.0%
! AACCACCTAAATTTGGGATT+GGG + chr6_1:18077205-18077224 None:intergenic 35.0%
! AAACCACCTAAATTTGGGAT+TGG + chr6_1:18077206-18077225 None:intergenic 35.0%
CTCATCAAACCACCTAAATT+TGG + chr6_1:18077212-18077231 None:intergenic 35.0%
CAAATTTAGGTGGTTTGATG+AGG - chr6_1:18077210-18077229 Msa0877890:CDS 35.0%
GATGGCTGAAATTAGATTTG+TGG - chr6_1:18077237-18077256 Msa0877890:CDS 35.0%
ACTGTTGCATGACAATCATA+TGG + chr6_1:18077278-18077297 None:intergenic 35.0%
ATGAGGTTCTCATGGATGAT+CGG - chr6_1:18073169-18073188 Msa0877890:three_prime_UTR 40.0%
!!! GGTGGTTTTGGGGATAAATT+TGG - chr6_1:18073378-18073397 Msa0877890:three_prime_UTR 40.0%
AAGATTAAGAAGCGAAGACC+TGG + chr6_1:18073427-18073446 None:intergenic 40.0%
AGGTCTTCGCTTCTTAATCT+TGG - chr6_1:18073426-18073445 Msa0877890:three_prime_UTR 40.0%
! AAGTCTTATCCCACTAACTG+GGG + chr6_1:18073548-18073567 None:intergenic 40.0%
! CAAGTCTTATCCCACTAACT+GGG + chr6_1:18073549-18073568 None:intergenic 40.0%
! ACAAGTCTTATCCCACTAAC+TGG + chr6_1:18073550-18073569 None:intergenic 40.0%
GGAAGATTTGTGTTTGGTAG+AGG - chr6_1:18073634-18073653 Msa0877890:three_prime_UTR 40.0%
! ATGAGAAGCACACATGCTAT+AGG + chr6_1:18073735-18073754 None:intergenic 40.0%
ATCCAAACAGGGCCATATAT+TGG - chr6_1:18074043-18074062 Msa0877890:intron 40.0%
GTCGATCCAACAAAATTGTG+AGG - chr6_1:18074173-18074192 Msa0877890:intron 40.0%
GAACATTGACACTAGAAGGA+TGG - chr6_1:18074257-18074276 Msa0877890:intron 40.0%
GTGTATCAGTGGTTTGATGA+TGG + chr6_1:18074442-18074461 None:intergenic 40.0%
! GCAGTCTCGATTTTGTTCTT+AGG + chr6_1:18074471-18074490 None:intergenic 40.0%
TTGTCTCACTTGTGCATGTT+AGG + chr6_1:18074745-18074764 None:intergenic 40.0%
TCTCTTGTGTGCCATAGAAT+TGG - chr6_1:18074890-18074909 Msa0877890:intron 40.0%
TCCATTCTCAAACATGTTGG+TGG - chr6_1:18074989-18075008 Msa0877890:intron 40.0%
ACCACCAACATGTTTGAGAA+TGG + chr6_1:18074993-18075012 None:intergenic 40.0%
CAAAGCGAAGACTTAAAGAC+TGG + chr6_1:18075062-18075081 None:intergenic 40.0%
TTCTCAGCGTCAAATAAGTC+TGG - chr6_1:18075212-18075231 Msa0877890:intron 40.0%
GTGCAAGTTACTCTATTCCA+TGG - chr6_1:18075266-18075285 Msa0877890:intron 40.0%
CTCTATTCCATGGAGAACTA+TGG - chr6_1:18075276-18075295 Msa0877890:intron 40.0%
GCATCAGTGCTGTCAAATAT+CGG - chr6_1:18075495-18075514 Msa0877890:intron 40.0%
TCCACCATGGTCAAATATGT+CGG - chr6_1:18075550-18075569 Msa0877890:intron 40.0%
ATGCAATACAGTGTTCTCGA+TGG + chr6_1:18075601-18075620 None:intergenic 40.0%
AGAACACTGTATTGCATGCA+TGG - chr6_1:18075604-18075623 Msa0877890:intron 40.0%
AGAACGGATCACAATTCTTG+CGG + chr6_1:18075810-18075829 None:intergenic 40.0%
!! AGTTCTTTAAAGCCAGTGGT+GGG + chr6_1:18076005-18076024 None:intergenic 40.0%
!! AAGGAGTTCTTTAAAGCCAG+TGG + chr6_1:18076009-18076028 None:intergenic 40.0%
TTCTTGGCCAGAGCTATATT+AGG - chr6_1:18076128-18076147 Msa0877890:intron 40.0%
AACAAAGGGATCATGATGCT+GGG + chr6_1:18076269-18076288 None:intergenic 40.0%
AAACAAAGGGATCATGATGC+TGG + chr6_1:18076270-18076289 None:intergenic 40.0%
GTTTCTTGTCATGGATAGCA+TGG - chr6_1:18076404-18076423 Msa0877890:intron 40.0%
TGCTTTCTCAATGGTGTTCA+TGG + chr6_1:18076637-18076656 None:intergenic 40.0%
GAGAGCAGATAACTGAATCA+AGG + chr6_1:18076693-18076712 None:intergenic 40.0%
!!! AGTTTTGGGGATTGATTGCA+TGG - chr6_1:18076775-18076794 Msa0877890:intron 40.0%
GCAAATTGCAAGAGACAACA+AGG + chr6_1:18076842-18076861 None:intergenic 40.0%
TTGCAATTTGCCTCACTAAG+TGG - chr6_1:18076851-18076870 Msa0877890:intron 40.0%
TTGCACAAGTAACTAGGGAA+GGG + chr6_1:18076885-18076904 None:intergenic 40.0%
ATTGCACAAGTAACTAGGGA+AGG + chr6_1:18076886-18076905 None:intergenic 40.0%
TTCTTGATCAGATGGTTCAG+AGG + chr6_1:18077035-18077054 None:intergenic 40.0%
ACCATCTGATCAAGAACGAA+TGG - chr6_1:18077039-18077058 Msa0877890:intron 40.0%
ACCATTCGTTCTTGATCAGA+TGG + chr6_1:18077043-18077062 None:intergenic 40.0%
TGATCAAGAACGAATGGTTC+AGG - chr6_1:18077045-18077064 Msa0877890:intron 40.0%
GTTTCGTTGCAGTCAAAAGT+GGG + chr6_1:18077183-18077202 None:intergenic 40.0%
CGAAACCCAATCCCAAATTT+AGG - chr6_1:18077197-18077216 Msa0877890:CDS 40.0%
AACCCAATCCCAAATTTAGG+TGG - chr6_1:18077200-18077219 Msa0877890:CDS 40.0%
TCAGCAGTACAAGTACAAGT+AGG + chr6_1:18077431-18077450 None:intergenic 40.0%
!! ACAGGTTTCTGAAGCGTATG+AGG - chr6_1:18073152-18073171 Msa0877890:three_prime_UTR 45.0%
TGAAGCGTATGAGGTTCTCA+TGG - chr6_1:18073161-18073180 Msa0877890:three_prime_UTR 45.0%
GATATGGTAGAAGTGGGAGT+GGG - chr6_1:18073301-18073320 Msa0877890:three_prime_UTR 45.0%
!! TTATTCGGATTTTGACGGCC+AGG - chr6_1:18073406-18073425 Msa0877890:three_prime_UTR 45.0%
CTCCAATATATGGCCCTGTT+TGG + chr6_1:18074048-18074067 None:intergenic 45.0%
CAAACAGGGCCATATATTGG+AGG - chr6_1:18074046-18074065 Msa0877890:intron 45.0%
! GTGAGCCCTCACAATTTTGT+TGG + chr6_1:18074182-18074201 None:intergenic 45.0%
AACGATGCACATACTTCCCA+AGG + chr6_1:18074227-18074246 None:intergenic 45.0%
TAAGGAGCTAAAGGGTGAGT+CGG + chr6_1:18074283-18074302 None:intergenic 45.0%
GTTGAGCCTAAGGAGCTAAA+GGG + chr6_1:18074291-18074310 None:intergenic 45.0%
AGTTGAGCCTAAGGAGCTAA+AGG + chr6_1:18074292-18074311 None:intergenic 45.0%
AACTAGCAGAGTTGAGCCTA+AGG + chr6_1:18074301-18074320 None:intergenic 45.0%
TTCACATTCTCTGCGAATCG+AGG - chr6_1:18074333-18074352 Msa0877890:CDS 45.0%
!! ATATCGGCCATGGTGGATAT+CGG - chr6_1:18075511-18075530 Msa0877890:intron 45.0%
TCCGACATATTTGACCATGG+TGG + chr6_1:18075554-18075573 None:intergenic 45.0%
CAATACAGTGTTCTCGATGG+CGG + chr6_1:18075598-18075617 None:intergenic 45.0%
TCACAATTCTTGCGGATGAC+CGG + chr6_1:18075802-18075821 None:intergenic 45.0%
!! GAGTTCTTTAAAGCCAGTGG+TGG + chr6_1:18076006-18076025 None:intergenic 45.0%
CATCGCACCTAATATAGCTC+TGG + chr6_1:18076138-18076157 None:intergenic 45.0%
CAGAGCTATATTAGGTGCGA+TGG - chr6_1:18076136-18076155 Msa0877890:intron 45.0%
!! AACGTGAAGAAGCATTCGAG+TGG + chr6_1:18076727-18076746 None:intergenic 45.0%
AGTCACGCTGTCGTAGATTT+AGG - chr6_1:18076959-18076978 Msa0877890:intron 45.0%
GTCACGCTGTCGTAGATTTA+GGG - chr6_1:18076960-18076979 Msa0877890:intron 45.0%
TCACGCTGTCGTAGATTTAG+GGG - chr6_1:18076961-18076980 Msa0877890:intron 45.0%
CTGTCGTAGATTTAGGGGAT+TGG - chr6_1:18076966-18076985 Msa0877890:intron 45.0%
AGTCCGATCTTGATCGTGTT+CGG - chr6_1:18077122-18077141 Msa0877890:CDS 45.0%
GGTTTCGTTGCAGTCAAAAG+TGG + chr6_1:18077184-18077203 None:intergenic 45.0%
GTGGTTTGATGAGGATCTGA+TGG - chr6_1:18077219-18077238 Msa0877890:CDS 45.0%
TGATTGTCATGCAACAGTCG+AGG - chr6_1:18077280-18077299 Msa0877890:CDS 45.0%
GCGCTGAGTTTAATTACCGC+TGG - chr6_1:18073196-18073215 Msa0877890:three_prime_UTR 50.0%
TTTAATTACCGCTGGCGAGC+AGG - chr6_1:18073204-18073223 Msa0877890:three_prime_UTR 50.0%
ATAGTTACCGGCACTTCCAC+CGG + chr6_1:18073256-18073275 None:intergenic 50.0%
GGATATGGTAGAAGTGGGAG+TGG - chr6_1:18073300-18073319 Msa0877890:three_prime_UTR 50.0%
GGGAGTGGGAGTGGTTATTA+TGG - chr6_1:18073327-18073346 Msa0877890:three_prime_UTR 50.0%
TATGGTAGAAGTGGGTCTGC+TGG - chr6_1:18073345-18073364 Msa0877890:three_prime_UTR 50.0%
CTTATCCCACTAACTGGGGT+CGG + chr6_1:18073544-18073563 None:intergenic 50.0%
! GACTCACCCTTTAGCTCCTT+AGG - chr6_1:18074282-18074301 Msa0877890:CDS 50.0%
TCTCTGCGAATCGAGGCTAA+AGG - chr6_1:18074340-18074359 Msa0877890:intron 50.0%
GTGCTGTCAAATATCGGCCA+TGG - chr6_1:18075501-18075520 Msa0877890:intron 50.0%
CTGTCAAATATCGGCCATGG+TGG - chr6_1:18075504-18075523 Msa0877890:intron 50.0%
!! TGGATATCGGTGGCGGTTTT+TGG - chr6_1:18075524-18075543 Msa0877890:intron 50.0%
!!! CGGTTTTTGGCTTTCCACCA+TGG - chr6_1:18075537-18075556 Msa0877890:intron 50.0%
!!! GGAATTTTGGCTCTCAGCCA+TGG - chr6_1:18075571-18075590 Msa0877890:intron 50.0%
CTGGCCAAGAATCTTCCATC+AGG + chr6_1:18076119-18076138 None:intergenic 50.0%
CATTCGAGTGGCAAGTGAAG+CGG + chr6_1:18076715-18076734 None:intergenic 50.0%
GGAAGAGAGACCACTTAGTG+AGG + chr6_1:18076864-18076883 None:intergenic 50.0%
!! AGTTAATGGTGGGTGCAGTC+AGG - chr6_1:18076998-18077017 Msa0877890:intron 50.0%
CGTCCGAACACGATCAAGAT+CGG + chr6_1:18077128-18077147 None:intergenic 50.0%
CGATCTTGATCGTGTTCGGA+CGG - chr6_1:18077126-18077145 Msa0877890:CDS 50.0%
GGGTGTAGTCATCATGCAGT+CGG + chr6_1:18077163-18077182 None:intergenic 50.0%
GTAGAAGTGGGAGTGGGAGT+GGG - chr6_1:18073307-18073326 Msa0877890:three_prime_UTR 55.0%
!!! GTGGTGGTGGTGGTGGTTTT+GGG - chr6_1:18073367-18073386 Msa0877890:three_prime_UTR 55.0%
!!! TGGTGGTGGTGGTGGTTTTG+GGG - chr6_1:18073368-18073387 Msa0877890:three_prime_UTR 55.0%
ACTAACTGGGGTCGGCTACA+TGG + chr6_1:18073536-18073555 None:intergenic 55.0%
ATGTAGCCGACCCCAGTTAG+TGG - chr6_1:18073535-18073554 Msa0877890:three_prime_UTR 55.0%
TGTAGCCGACCCCAGTTAGT+GGG - chr6_1:18073536-18073555 Msa0877890:three_prime_UTR 55.0%
GTGAGGGAAGTGAGGCAGAT+GGG + chr6_1:18075152-18075171 None:intergenic 55.0%
TGTGAGGGAAGTGAGGCAGA+TGG + chr6_1:18075153-18075172 None:intergenic 55.0%
GCAGCATCACATTGCACCAC+CGG - chr6_1:18075780-18075799 Msa0877890:intron 55.0%
CAATTCTTGCGGATGACCGG+TGG + chr6_1:18075799-18075818 None:intergenic 55.0%
GGGATCATGATGCTGGGATG+TGG + chr6_1:18076263-18076282 None:intergenic 55.0%
AATTACCGCTGGCGAGCAGG+TGG - chr6_1:18073207-18073226 Msa0877890:three_prime_UTR 60.0%
GGTAGAAGTGGGAGTGGGAG+TGG - chr6_1:18073306-18073325 Msa0877890:three_prime_UTR 60.0%
GGTAGAAGTGGGTCTGCTGG+TGG - chr6_1:18073348-18073367 Msa0877890:three_prime_UTR 60.0%
AGAAGTGGGTCTGCTGGTGG+TGG - chr6_1:18073351-18073370 Msa0877890:three_prime_UTR 60.0%
!!! GGTGGTGGTGGTGGTGGTTT+TGG - chr6_1:18073366-18073385 Msa0877890:three_prime_UTR 60.0%
!! TCGGCCATGGTGGATATCGG+TGG - chr6_1:18075514-18075533 Msa0877890:intron 60.0%
!! GCCATGGTGGATATCGGTGG+CGG - chr6_1:18075517-18075536 Msa0877890:intron 60.0%
ACCGCCACCGATATCCACCA+TGG + chr6_1:18075521-18075540 None:intergenic 60.0%
!! GTGTTCTCGATGGCGGACCA+TGG + chr6_1:18075591-18075610 None:intergenic 60.0%
!! GGTGGTGGTGGAGGAAGTGC+CGG - chr6_1:18073225-18073244 Msa0877890:three_prime_UTR 65.0%
AGTGGGAGTGGGAGTGGGAG+TGG - chr6_1:18073312-18073331 Msa0877890:three_prime_UTR 65.0%
GTGGGAGTGGGAGTGGGAGT+GGG - chr6_1:18073313-18073332 Msa0877890:three_prime_UTR 65.0%
AGTGGGAGTGGGAGTGGGAG+TGG - chr6_1:18073312-18073331 Msa0877890:three_prime_UTR 65.0%
!! AGTGGGTCTGCTGGTGGTGG+TGG - chr6_1:18073354-18073373 Msa0877890:three_prime_UTR 65.0%
!! TCTGCTGGTGGTGGTGGTGG+TGG - chr6_1:18073360-18073379 Msa0877890:three_prime_UTR 65.0%
TACCGCTGGCGAGCAGGTGG+TGG - chr6_1:18073210-18073229 Msa0877890:three_prime_UTR 70.0%
CACCACCACCTGCTCGCCAG+CGG + chr6_1:18073215-18073234 None:intergenic 70.0%
!! TGGCGAGCAGGTGGTGGTGG+AGG - chr6_1:18073216-18073235 Msa0877890:three_prime_UTR 70.0%
!! GGAGGAAGTGCCGGTGCTGC+CGG - chr6_1:18073234-18073253 Msa0877890:three_prime_UTR 70.0%
GGCACTTCCACCGGCAGCAC+CGG + chr6_1:18073247-18073266 None:intergenic 70.0%
! GGTGCTGCCGGTGGAAGTGC+CGG - chr6_1:18073246-18073265 Msa0877890:three_prime_UTR 70.0%
!! GGGTCTGCTGGTGGTGGTGG+TGG - chr6_1:18073357-18073376 Msa0877890:three_prime_UTR 70.0%
! CGCTGGCGAGCAGGTGGTGG+TGG - chr6_1:18073213-18073232 Msa0877890:three_prime_UTR 75.0%
!! GGAAGTGCCGGTGCTGCCGG+TGG - chr6_1:18073237-18073256 Msa0877890:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 18073003 18077482 18073003 ID=Msa0877890;Name=Msa0877890
chr6_1 mRNA 18073003 18077482 18073003 ID=Msa0877890-mRNA-1;Parent=Msa0877890;Name=Msa0877890-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0.5|0.33|1|0.5|0.66|3|787|194
chr6_1 exon 18073003 18073867 18073003 ID=Msa0877890-mRNA-1:exon:4931;Parent=Msa0877890-mRNA-1
chr6_1 exon 18074277 18074358 18074277 ID=Msa0877890-mRNA-1:exon:4930;Parent=Msa0877890-mRNA-1
chr6_1 exon 18077058 18077482 18077058 ID=Msa0877890-mRNA-1:exon:4929;Parent=Msa0877890-mRNA-1
chr6_1 CDS 18077058 18077482 18077058 ID=Msa0877890-mRNA-1:cds;Parent=Msa0877890-mRNA-1
chr6_1 CDS 18074277 18074358 18074277 ID=Msa0877890-mRNA-1:cds;Parent=Msa0877890-mRNA-1
chr6_1 CDS 18073790 18073867 18073790 ID=Msa0877890-mRNA-1:cds;Parent=Msa0877890-mRNA-1
chr6_1 three_prime_UTR 18073003 18073789 18073003 ID=Msa0877890-mRNA-1:three_prime_utr;Parent=Msa0877890-mRNA-1
Gene Sequence

>Msa0877890

ATGGATCATTACAAGGTTCTAGGGTTACACAAAACAGCATCAAAAGAAGAAATCAAAATCGCATTCAAGAAACTCGCGTTTCAATTTCATCCAGATAAGCATTCTCAATCATCTAAATCCGTTAGAGAAAATGCAACAATTCGATTTAAACAGGTTTCTGAAGCGTATGAGGTTCTCATGGATGATCGGAAACGCGCTGAGTTTAATTACCGCTGGCGAGCAGGTGGTGGTGGAGGAAGTGCCGGTGCTGCCGGTGGAAGTGCCGGTAACTATTATTACCAATCTCAGTATAGTTATGGATATGGTAGAAGTGGGAGTGGGAGTGGGAGTGGGAGTGGTTATTATGGTAGAAGTGGGTCTGCTGGTGGTGGTGGTGGTGGTTTTGGGGATAAATTTGGGGTTTTTATTCGGATTTTGACGGCCAGATTCTTGGCCAGAGCTATATTAGGTGCGATGGTTGTTGTTGATTCAAGTGGAGAATCTTTATGGAAGATGCAAAATTCTGGGAAATCTTTTGAAGAAGCCATGAACACCATTGAGAAAGCAAAAGTGTATAAAAAAGATAACACGAATGAACATCCTTGA
Protein sequence

>Msa0877890

MDHYKVLGLHKTASKEEIKIAFKKLAFQFHPDKHSQSSKSVRENATIRFKQVSEAYEVLMDDRKRAEFNYRWRAGGGGGSAGAAGGSAGNYYYQSQYSYGYGRSGSGSGSGSGYYGRSGSAGGGGGGFGDKFGVFIRILTARFLARAILGAMVVVDSSGESLWKMQNSGKSFEEAMNTIEKAKVYKKDNTNEHP*