AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0341190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0341190 MtrunA17_Chr2g0332291 96.629 623 15 1 1 623 1 617 0.0 1209
Msa0341190 MtrunA17_Chr4g0003851 80.507 631 107 4 1 623 1 623 0.0 972
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0341190 AT1G80300.1 77.578 611 129 4 1 606 1 608 0.0 929
Msa0341190 AT1G15500.1 75.523 621 133 5 1 612 1 611 0.0 904

Find 147 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAAACCCACCAATGATTT+TGG 0.124637 2_4:+62601803 None:intergenic
TTGTTATCTGCTTCCTTTAT+TGG 0.155235 2_4:-62600084 Msa0341190:CDS
CGCTTGCAATTATGAGAATT+TGG 0.200674 2_4:-62601233 Msa0341190:CDS
CATATTTGTTGAATATAAAT+TGG 0.215723 2_4:+62598961 None:intergenic
ATCCTTGGACCGCGGTTTCT+TGG 0.227749 2_4:-62601258 Msa0341190:CDS
CTTTCAGGAGAAGCCGAAAA+TGG 0.229700 2_4:-62599289 Msa0341190:intron
CCTTAACTCTTCAAAGGTTT+TGG 0.243357 2_4:-62602083 Msa0341190:five_prime_UTR
TTGTGATTTCTGTTCTGTTT+TGG 0.265525 2_4:-62601167 Msa0341190:CDS
GATAGATTCTATATTCTAAA+AGG 0.268067 2_4:+62602009 None:intergenic
GCTTCTGCTGGTGTTGGTTC+TGG 0.273873 2_4:-62601681 Msa0341190:CDS
CAATTTATATTCAACAAATA+TGG 0.275165 2_4:-62598960 Msa0341190:CDS
TGATGTCTTCAAGATATATA+AGG 0.283832 2_4:-62599242 Msa0341190:CDS
GCACCTGTTATTGGAAAGTT+TGG 0.295937 2_4:-62598849 Msa0341190:CDS
GATCCACTCGCACCTGTTAT+TGG 0.308842 2_4:-62598858 Msa0341190:CDS
CCAAAACCTTTGAAGAGTTA+AGG 0.320668 2_4:+62602083 None:intergenic
GTGAATCTTCCTATGGCTAT+TGG 0.321415 2_4:-62601444 Msa0341190:CDS
ATACTTGGGAGGTGTGCTTT+TGG 0.331973 2_4:-62598112 Msa0341190:CDS
TCTAGTCTGAGGGAAACTTT+AGG 0.344531 2_4:-62600172 Msa0341190:CDS
CGCTCGTAGCCAGAAGAAAA+AGG 0.347930 2_4:-62600035 Msa0341190:intron
CTGTGCTTTAAGCCATTTGA+TGG 0.353294 2_4:+62601843 None:intergenic
CTGGTTTAACAATTTGTTGT+AGG 0.361025 2_4:-62597796 Msa0341190:three_prime_UTR
GGCGATTTCTCAACCGCAAC+TGG 0.363781 2_4:-62599014 Msa0341190:CDS
ACTTTAGGTCCTGGAGTTGA+TGG 0.364996 2_4:-62600157 Msa0341190:CDS
AATCCAAACTTTCCAATAAC+AGG 0.365463 2_4:+62598846 None:intergenic
AGCTAATTCAACTCCATACT+TGG 0.368256 2_4:-62598127 Msa0341190:CDS
AATTGTTCACCCACCAATAA+AGG 0.372051 2_4:+62600071 None:intergenic
AAAAGCACACCTCCCAAGTA+TGG 0.374398 2_4:+62598114 None:intergenic
TTTGTTGTAGGTAAATTATC+TGG 0.377811 2_4:-62597784 Msa0341190:three_prime_UTR
TTCTATCCACTGTTTGGACT+TGG 0.381227 2_4:-62600241 Msa0341190:CDS
GTTGGTTCTGGTGGTGGTGA+TGG 0.387296 2_4:-62601669 Msa0341190:CDS
GATGTTGTATGCAACCCATT+AGG 0.390606 2_4:-62598204 Msa0341190:CDS
CAGTTCATGATCCTAACTTT+TGG 0.391159 2_4:-62598156 Msa0341190:CDS
GAAGCTGTTCTTCAATCAAA+AGG 0.398374 2_4:-62601909 Msa0341190:CDS
AAGCGATTCTATCCACTGTT+TGG 0.399212 2_4:-62600247 Msa0341190:CDS
GCCACATTAGTGGTTGCATA+TGG 0.400363 2_4:-62599213 Msa0341190:CDS
TCACCAAATCCCAAAATCAT+TGG 0.405028 2_4:-62601813 Msa0341190:CDS
TGCAACCCATTAGGAAAATC+TGG 0.407154 2_4:-62598195 Msa0341190:CDS
GCTGGTGTTGGTTCTGGTGG+TGG 0.411332 2_4:-62601675 Msa0341190:CDS
ATTTGATCCGTGCAAAGAAA+TGG 0.413264 2_4:-62598751 Msa0341190:CDS
CTCAAGAAGATTATACCTCT+TGG 0.415345 2_4:-62601582 Msa0341190:CDS
TCACCTGCTTCTGTATATAA+AGG 0.424567 2_4:+62597934 None:intergenic
TAGCTAGTGAACCAAAAGTT+AGG 0.428507 2_4:+62598145 None:intergenic
ATAAAAGACGAGTACTCATT+CGG 0.430650 2_4:+62599038 None:intergenic
TAGGTCCTGGAGTTGATGGT+TGG 0.436364 2_4:-62600153 Msa0341190:CDS
AGGTCCTGGAGTTGATGGTT+GGG 0.439493 2_4:-62600152 Msa0341190:CDS
GATAACCTTCTTAGTATCCT+TGG 0.441619 2_4:-62601273 Msa0341190:CDS
ATTTCTTGCTGTAGGTCAAA+GGG 0.442605 2_4:-62598239 Msa0341190:intron
CGGATCAAATAAACTGTACT+TGG 0.442749 2_4:+62598764 None:intergenic
AAACAATGAAATTACCTGAT+TGG 0.451901 2_4:+62601137 None:intergenic
TTCTCTAACTAATAATGGGT+TGG 0.455788 2_4:-62601784 Msa0341190:CDS
AAGGGATCTTGCCACATTAG+TGG 0.458361 2_4:-62599223 Msa0341190:CDS
CTGTCCGACCGGAGAATACA+AGG 0.461059 2_4:+62600206 None:intergenic
GGAAAGAGAAACTGCTGTTA+AGG 0.462177 2_4:-62598001 Msa0341190:CDS
TTAATCTTGTTGAAGTTACA+TGG 0.465742 2_4:-62599182 Msa0341190:CDS
TTTATGTCATGGCTGAATTG+TGG 0.465791 2_4:-62601197 Msa0341190:CDS
TTTCAGGAGAAGCCGAAAAT+GGG 0.471676 2_4:-62599288 Msa0341190:intron
TAGATTGCAATTCTATGGAT+AGG 0.472370 2_4:-62597862 Msa0341190:three_prime_UTR
TATCTGCTTCCTTTATTGGT+GGG 0.472645 2_4:-62600080 Msa0341190:CDS
TTATGTCATGGCTGAATTGT+GGG 0.475139 2_4:-62601196 Msa0341190:CDS
CTGAGGGAAACTTTAGGTCC+TGG 0.481369 2_4:-62600166 Msa0341190:CDS
TAAAAGACGAGTACTCATTC+GGG 0.484768 2_4:+62599039 None:intergenic
GAAGCAGCTTCTGCTGGTGT+TGG 0.488107 2_4:-62601687 Msa0341190:CDS
TCACTCATGAAAGAAGTGTC+TGG 0.488129 2_4:-62597815 Msa0341190:three_prime_UTR
TTATCTGCTTCCTTTATTGG+TGG 0.489713 2_4:-62600081 Msa0341190:CDS
TCAAGAAGATTATACCTCTT+GGG 0.490906 2_4:-62601581 Msa0341190:CDS
GATGTCTTCAAGATATATAA+GGG 0.494355 2_4:-62599241 Msa0341190:CDS
AATGTTGCCCTTGTATTCTC+CGG 0.497366 2_4:-62600214 Msa0341190:CDS
GTAATGAGGGATAGAAAAGA+TGG 0.498930 2_4:+62601964 None:intergenic
AAGCTGTTCTTCAATCAAAA+GGG 0.502879 2_4:-62601908 Msa0341190:CDS
TATATTCAACAAATATGGAT+GGG 0.507628 2_4:-62598955 Msa0341190:CDS
GTCCTGCTTATGACTGGAGT+TGG 0.510084 2_4:-62598906 Msa0341190:CDS
GAAATCAAAGCTCAAAGCTC+AGG 0.510846 2_4:-62599160 Msa0341190:intron
TTCTGGCTACGAGCGGGAAG+AGG 0.510867 2_4:+62600043 None:intergenic
AATTTCTTGCTGTAGGTCAA+AGG 0.511554 2_4:-62598240 Msa0341190:intron
AACATGGGTGAATCTTCCTA+TGG 0.516555 2_4:-62601451 Msa0341190:CDS
GATGAGCATTGTTGTCGGTA+TGG 0.520984 2_4:-62600110 Msa0341190:CDS
ATGTAGGCCATTTCTTTGCA+CGG 0.521303 2_4:+62598744 None:intergenic
GCACCTTTATATACAGAAGC+AGG 0.523808 2_4:-62597937 Msa0341190:CDS
AAAGCTGAAGCAGCTTCTGC+TGG 0.525584 2_4:-62601693 Msa0341190:CDS
GACGAGTACTCATTCGGGCT+AGG 0.527586 2_4:+62599044 None:intergenic
TTATATTCAACAAATATGGA+TGG 0.528143 2_4:-62598956 Msa0341190:CDS
AGATTCAGATGGACTAATGA+AGG 0.533272 2_4:+62597909 None:intergenic
TTCCCACAAACCCCAAAACC+AGG 0.534323 2_4:-62601875 Msa0341190:CDS
TGTCCACCTTAACTCTTCAA+AGG 0.534980 2_4:-62602089 Msa0341190:five_prime_UTR
GCAATGATGAGCATTGTTGT+CGG 0.538797 2_4:-62600115 Msa0341190:CDS
TTCTTAGTATCCTTGGACCG+CGG 0.539530 2_4:-62601266 Msa0341190:CDS
TCTGCTGGTGTTGGTTCTGG+TGG 0.540827 2_4:-62601678 Msa0341190:CDS
TCAACAAAACATGAGTAATG+AGG 0.541646 2_4:+62601950 None:intergenic
GAAGGTAGCGATTCCAGTTG+CGG 0.541781 2_4:+62599001 None:intergenic
CCAAATCCCAAAATCATTGG+TGG 0.541900 2_4:-62601810 Msa0341190:CDS
GGTTATCAGCAAATGCTTGA+GGG 0.546477 2_4:+62601289 None:intergenic
CAACAAAACATGAGTAATGA+GGG 0.546582 2_4:+62601951 None:intergenic
TTGCTAGCTGCTGTATATGT+TGG 0.546905 2_4:-62598816 Msa0341190:CDS
AGAAGAACTCGAGAAAGAGT+TGG 0.547282 2_4:-62598022 Msa0341190:CDS
AAAGTATTTGACTGTCCGAC+CGG 0.548078 2_4:+62600195 None:intergenic
TGGGTTGCATACAACATCAA+TGG 0.549558 2_4:+62598209 None:intergenic
AGAAATGGCCTACATACCCT+TGG 0.550644 2_4:-62598736 Msa0341190:CDS
AACCTTGGTATCCTCATCCA+AGG 0.550694 2_4:+62598719 None:intergenic
ATGAGCATTGTTGTCGGTAT+GGG 0.551365 2_4:-62600109 Msa0341190:CDS
GACCAAGAAACCGCGGTCCA+AGG 0.557335 2_4:+62601256 None:intergenic
TGAGGAGTTCAAGATTCAGA+TGG 0.559870 2_4:+62597898 None:intergenic
GGAGAATACAAGGGCAACAT+TGG 0.560749 2_4:+62600216 None:intergenic
AACCAACTCCAGTCATAAGC+AGG 0.562200 2_4:+62598904 None:intergenic
TTGCCCTTGTATTCTCCGGT+CGG 0.566110 2_4:-62600210 Msa0341190:CDS
TGTGCTTTAAGCCATTTGAT+GGG 0.568863 2_4:+62601844 None:intergenic
ATATTCAACAAATATGGATG+GGG 0.569187 2_4:-62598954 Msa0341190:CDS
GGCCTACATACCCTTGGATG+AGG 0.576175 2_4:-62598730 Msa0341190:CDS
CCTACCGTCCTGCTTATGAC+TGG 0.580717 2_4:-62598912 Msa0341190:CDS
CAAATCCCAAAATCATTGGT+GGG 0.583122 2_4:-62601809 Msa0341190:CDS
AGGTTATCAGCAAATGCTTG+AGG 0.584662 2_4:+62601288 None:intergenic
GCAGATAACCACCGTTGATG+AGG 0.585549 2_4:-62600272 Msa0341190:intron
TAATGAGGGATAGAAAAGAT+GGG 0.587561 2_4:+62601965 None:intergenic
GGGTGAATATAGTTGCTAAG+AGG 0.591742 2_4:+62601309 None:intergenic
ATCTAAAATTAATTATTGTG+AGG 0.596797 2_4:+62597880 None:intergenic
ATCCTCATCCAAGGGTATGT+AGG 0.597277 2_4:+62598728 None:intergenic
ACATATACAGCAGCTAGCAA+TGG 0.597920 2_4:+62598819 None:intergenic
ATGGCCCAACCATCAACTCC+AGG 0.601776 2_4:+62600148 None:intergenic
GAAGCCGAAAATGGGAACAA+TGG 0.602041 2_4:-62599280 Msa0341190:CDS
GCTAATTCAACTCCATACTT+GGG 0.602853 2_4:-62598126 Msa0341190:CDS
ATGTCATGGCTGAATTGTGG+GGG 0.605136 2_4:-62601194 Msa0341190:CDS
AAACCTTTGAAGAGTTAAGG+TGG 0.606025 2_4:+62602086 None:intergenic
AAACTGAGTGTCAAGTGACT+TGG 0.606198 2_4:+62598062 None:intergenic
TCCATATGCAACCACTAATG+TGG 0.607287 2_4:+62599212 None:intergenic
TCTTCATTCTCAGTCAACAC+TGG 0.610944 2_4:+62597976 None:intergenic
GCGGTCCAAGGATACTAAGA+AGG 0.613184 2_4:+62601268 None:intergenic
GTTCTTGTTGTGACTGCTAG+AGG 0.613969 2_4:-62601504 Msa0341190:CDS
CAAATTCTCATAATTGCAAG+CGG 0.621047 2_4:+62601234 None:intergenic
GAATCGCTTTGCCTCATCAA+CGG 0.622356 2_4:+62600261 None:intergenic
AACATAAAACCAATAGCCAT+AGG 0.622502 2_4:+62601435 None:intergenic
TTTCCAATAACAGGTGCGAG+TGG 0.623198 2_4:+62598855 None:intergenic
ACTGAGAATGAAGATGAAGA+TGG 0.625187 2_4:-62597967 Msa0341190:CDS
ACCCTTGGATGAGGATACCA+AGG 0.628244 2_4:-62598721 Msa0341190:intron
TTGAACTCTTCATAGAAACA+TGG 0.629436 2_4:-62601931 Msa0341190:exon
TGAGGGATAGAAAAGATGGG+TGG 0.634117 2_4:+62601968 None:intergenic
TATGTCATGGCTGAATTGTG+GGG 0.635142 2_4:-62601195 Msa0341190:CDS
GCTTACAAGCATCATCGTGA+AGG 0.635903 2_4:+62598983 None:intergenic
TTCTTCTTCGCGACGCAATG+CGG 0.636676 2_4:+62598038 None:intergenic
AATTCAACTCCATACTTGGG+AGG 0.648893 2_4:-62598123 Msa0341190:CDS
ACCTTGGTATCCTCATCCAA+GGG 0.649968 2_4:+62598720 None:intergenic
CTTGCTGTAGGTCAAAGGGA+AGG 0.663386 2_4:-62598235 Msa0341190:intron
AACTCCAGTCATAAGCAGGA+CGG 0.669905 2_4:+62598908 None:intergenic
CCAGTCATAAGCAGGACGGT+AGG 0.670943 2_4:+62598912 None:intergenic
TCGCTTTGCCTCATCAACGG+TGG 0.685636 2_4:+62600264 None:intergenic
TGTCCGACCGGAGAATACAA+GGG 0.707927 2_4:+62600207 None:intergenic
TTGGCTCCAAGTCCAAACAG+TGG 0.718510 2_4:+62600235 None:intergenic
GCAAGCGGACCAAGAAACCG+CGG 0.733587 2_4:+62601249 None:intergenic
AACCCATTAGGAAAATCTGG+TGG 0.735499 2_4:-62598192 Msa0341190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTGCTATATCTAAAT+TGG - chr2_4:62598870-62598889 Msa0341190:CDS 15.0%
!!! GAATACTAATATATACTTTT+TGG - chr2_4:62599526-62599545 Msa0341190:intron 15.0%
!! GTATATTAAAAAGTAAAACA+AGG + chr2_4:62600433-62600452 None:intergenic 15.0%
!!! TTTCAAAATTTTGGATTTTA+TGG + chr2_4:62600455-62600474 None:intergenic 15.0%
!!! AAATATTATTGAAAAGTACA+TGG + chr2_4:62600481-62600500 None:intergenic 15.0%
!!! ATTTATATTTTACATCGTTA+TGG - chr2_4:62600507-62600526 Msa0341190:intron 15.0%
!!! CATATTTGTTGAATATAAAT+TGG + chr2_4:62600864-62600883 None:intergenic 15.0%
!! CAATTTATATTCAACAAATA+TGG - chr2_4:62600862-62600881 Msa0341190:intron 15.0%
!! AAAGATTAAATGTTATGTAA+AGG - chr2_4:62601204-62601223 Msa0341190:CDS 15.0%
!!! ATCTAAAATTAATTATTGTG+AGG + chr2_4:62601945-62601964 None:intergenic 15.0%
!! GATAGATTCTATATTCTAAA+AGG + chr2_4:62597816-62597835 None:intergenic 20.0%
!!! TTATACCTTTTTTGAAAACA+TGG - chr2_4:62598355-62598374 Msa0341190:intron 20.0%
!!! TATACCTTTTTTGAAAACAT+GGG - chr2_4:62598356-62598375 Msa0341190:intron 20.0%
!!! TTCCTTTTATTGCTTTTTTT+GGG - chr2_4:62598469-62598488 Msa0341190:intron 20.0%
!!! TTTCTGTTTATTTTATGTCA+TGG - chr2_4:62598614-62598633 Msa0341190:intron 20.0%
!!! GACATATGATAAATTTTTTC+TGG - chr2_4:62598779-62598798 Msa0341190:CDS 20.0%
!! TAATGAATGATAAGAAGAAA+AGG + chr2_4:62598977-62598996 None:intergenic 20.0%
!!! TTGTTGTTAAGTTTGTTAAA+GGG - chr2_4:62599032-62599051 Msa0341190:CDS 20.0%
!! CTAGTTAACTATTCAAAATT+GGG + chr2_4:62599281-62599300 None:intergenic 20.0%
!! TCTAGTTAACTATTCAAAAT+TGG + chr2_4:62599282-62599301 None:intergenic 20.0%
!!! AAAATAATACCTTTTTCTTC+TGG + chr2_4:62599799-62599818 None:intergenic 20.0%
!!! CTATATCATTCCAATTTTAT+CGG - chr2_4:62599982-62600001 Msa0341190:intron 20.0%
!! TGCTATTGAAATAAAAACTA+TGG + chr2_4:62600359-62600378 None:intergenic 20.0%
!!! TTTTATTTCAATAGCATGAT+TGG - chr2_4:62600363-62600382 Msa0341190:intron 20.0%
!!! ACATGGTTTTTTCAAAATTT+TGG + chr2_4:62600464-62600483 None:intergenic 20.0%
!! TTATATTCAACAAATATGGA+TGG - chr2_4:62600866-62600885 Msa0341190:intron 20.0%
!! TATATTCAACAAATATGGAT+GGG - chr2_4:62600867-62600886 Msa0341190:intron 20.0%
!!! TTCTTTTCTCTCATATTATT+CGG - chr2_4:62600940-62600959 Msa0341190:intron 20.0%
!!! ACTTTATTTTCTAATAGTCA+AGG - chr2_4:62601246-62601265 Msa0341190:CDS 20.0%
!!! TGTATAATTTTGGAGTATTA+AGG + chr2_4:62601519-62601538 None:intergenic 20.0%
!!! CCTATAAAGTTGTATAATTT+TGG + chr2_4:62601529-62601548 None:intergenic 20.0%
!! CCAAAATTATACAACTTTAT+AGG - chr2_4:62601526-62601545 Msa0341190:CDS 20.0%
!!! AATTTTAGATTGCAATTCTA+TGG - chr2_4:62601955-62601974 Msa0341190:five_prime_UTR 20.0%
!! GGTTTTCTCTAACTAATAAT+GGG - chr2_4:62598034-62598053 Msa0341190:CDS 25.0%
!!! ATCAAAGACATTAGCTTTTA+AGG + chr2_4:62598082-62598101 None:intergenic 25.0%
!! ACTGAGAAACAAAAGTTTTT+AGG - chr2_4:62598201-62598220 Msa0341190:CDS 25.0%
!! ATCTAATGTTTTGTCAAAAC+AGG - chr2_4:62598425-62598444 Msa0341190:intron 25.0%
!!! GTTCCTTTTATTGCTTTTTT+TGG - chr2_4:62598468-62598487 Msa0341190:intron 25.0%
!!! TCCTTTTATTGCTTTTTTTG+GGG - chr2_4:62598470-62598489 Msa0341190:intron 25.0%
! AAACAATGAAATTACCTGAT+TGG + chr2_4:62598688-62598707 None:intergenic 25.0%
! AATAGAACAAACTCATCAAA+AGG + chr2_4:62598852-62598871 None:intergenic 25.0%
!!! GTTGTTGTTAAGTTTGTTAA+AGG - chr2_4:62599031-62599050 Msa0341190:CDS 25.0%
!!! TAAGTTTGTTAAAGGGATAT+TGG - chr2_4:62599039-62599058 Msa0341190:CDS 25.0%
!!! AAGTTTGTTAAAGGGATATT+GGG - chr2_4:62599040-62599059 Msa0341190:CDS 25.0%
! AGACAAAAGATTACAAATGA+GGG + chr2_4:62599088-62599107 None:intergenic 25.0%
! TAGACAAAAGATTACAAATG+AGG + chr2_4:62599089-62599108 None:intergenic 25.0%
! TTCATCAAGTAATACTTAAG+TGG - chr2_4:62599155-62599174 Msa0341190:intron 25.0%
!!! AAGTTTCAAGTTGTTTATCA+AGG - chr2_4:62599354-62599373 Msa0341190:intron 25.0%
!! CTTACATTTTTGTCTCATTA+TGG - chr2_4:62599872-62599891 Msa0341190:intron 25.0%
! AAATTGGAATGATATAGAGA+AGG + chr2_4:62599979-62599998 None:intergenic 25.0%
! TGATGTCTTCAAGATATATA+AGG - chr2_4:62600580-62600599 Msa0341190:intron 25.0%
! GATGTCTTCAAGATATATAA+GGG - chr2_4:62600581-62600600 Msa0341190:intron 25.0%
! TTAATCTTGTTGAAGTTACA+TGG - chr2_4:62600640-62600659 Msa0341190:intron 25.0%
!! TATATCACTTGTTTCAGTTT+TGG - chr2_4:62600688-62600707 Msa0341190:intron 25.0%
! ATATTCAACAAATATGGATG+GGG - chr2_4:62600868-62600887 Msa0341190:intron 25.0%
! CATGTATGATAAAGTTTCAT+TGG + chr2_4:62601181-62601200 None:intergenic 25.0%
! AATAAGCTGAGAACAATTTA+TGG + chr2_4:62601390-62601409 None:intergenic 25.0%
! TTAAGATGTTTAACCAAACA+AGG - chr2_4:62601493-62601512 Msa0341190:CDS 25.0%
!! TTTGTTGTAGGTAAATTATC+TGG - chr2_4:62602038-62602057 Msa0341190:five_prime_UTR 25.0%
TAATGAGGGATAGAAAAGAT+GGG + chr2_4:62597860-62597879 None:intergenic 30.0%
CAACAAAACATGAGTAATGA+GGG + chr2_4:62597874-62597893 None:intergenic 30.0%
TCAACAAAACATGAGTAATG+AGG + chr2_4:62597875-62597894 None:intergenic 30.0%
TTGAACTCTTCATAGAAACA+TGG - chr2_4:62597891-62597910 Msa0341190:exon 30.0%
AAGCTGTTCTTCAATCAAAA+GGG - chr2_4:62597914-62597933 Msa0341190:CDS 30.0%
!! ATTTGATGGGTTTAAAAACC+TGG + chr2_4:62597968-62597987 None:intergenic 30.0%
! AGGTTTTTAAACCCATCAAA+TGG - chr2_4:62597967-62597986 Msa0341190:CDS 30.0%
! GGGTTTTCTCTAACTAATAA+TGG - chr2_4:62598033-62598052 Msa0341190:CDS 30.0%
!! TTCTCTAACTAATAATGGGT+TGG - chr2_4:62598038-62598057 Msa0341190:CDS 30.0%
TCAAGAAGATTATACCTCTT+GGG - chr2_4:62598241-62598260 Msa0341190:intron 30.0%
! TTCACCCATGTTTTCAAAAA+AGG + chr2_4:62598363-62598382 None:intergenic 30.0%
AACATAAAACCAATAGCCAT+AGG + chr2_4:62598390-62598409 None:intergenic 30.0%
CAAATTCTCATAATTGCAAG+CGG + chr2_4:62598591-62598610 None:intergenic 30.0%
! TTGTGATTTCTGTTCTGTTT+TGG - chr2_4:62598655-62598674 Msa0341190:intron 30.0%
! TGTGATTTCTGTTCTGTTTT+GGG - chr2_4:62598656-62598675 Msa0341190:intron 30.0%
ATCAAAAGGTGAACATGTTT+AGG + chr2_4:62598838-62598857 None:intergenic 30.0%
GTGTTCTACTTGCAATAATA+TGG - chr2_4:62598914-62598933 Msa0341190:CDS 30.0%
! CTAATAGTTTGCATCATGAA+AGG + chr2_4:62599238-62599257 None:intergenic 30.0%
TGATGCAAACTATTAGAAAG+AGG - chr2_4:62599242-62599261 Msa0341190:CDS 30.0%
TAGAAAGAGGAATATGATGT+TGG - chr2_4:62599255-62599274 Msa0341190:CDS 30.0%
CAAGTTGTTTATCAAGGAAT+TGG - chr2_4:62599360-62599379 Msa0341190:intron 30.0%
GAAGTTCTTATTGTTTGTGA+AGG - chr2_4:62599495-62599514 Msa0341190:intron 30.0%
!! TCAAATACTTTTCTAGTCTG+AGG - chr2_4:62599639-62599658 Msa0341190:intron 30.0%
!! CAAATACTTTTCTAGTCTGA+GGG - chr2_4:62599640-62599659 Msa0341190:intron 30.0%
!! AATGCTCATCATTGCTTTTA+GGG + chr2_4:62599702-62599721 None:intergenic 30.0%
TTGTTATCTGCTTCCTTTAT+TGG - chr2_4:62599738-62599757 Msa0341190:intron 30.0%
! TCATTCCAATTTTATCGGAT+AGG - chr2_4:62599987-62600006 Msa0341190:intron 30.0%
AGCACAAAATAGGTACTTTA+CGG - chr2_4:62600248-62600267 Msa0341190:CDS 30.0%
AACAAGGATATCAAATAGCT+AGG + chr2_4:62600417-62600436 None:intergenic 30.0%
ATAAAAGACGAGTACTCATT+CGG + chr2_4:62600787-62600806 None:intergenic 30.0%
! AATGAGTACTCGTCTTTTAT+GGG - chr2_4:62600787-62600806 Msa0341190:intron 30.0%
AATCCAAACTTTCCAATAAC+AGG + chr2_4:62600979-62600998 None:intergenic 30.0%
! TTTTTGTAAGCTCTCCAAAA+CGG + chr2_4:62601352-62601371 None:intergenic 30.0%
! GTGTTAAAATTTCTTGCTGT+AGG - chr2_4:62601575-62601594 Msa0341190:CDS 30.0%
TAGATTGCAATTCTATGGAT+AGG - chr2_4:62601960-62601979 Msa0341190:five_prime_UTR 30.0%
!! CTGGTTTAACAATTTGTTGT+AGG - chr2_4:62602026-62602045 Msa0341190:five_prime_UTR 30.0%
! AAACCTTTGAAGAGTTAAGG+TGG + chr2_4:62597739-62597758 None:intergenic 35.0%
! CCAAAACCTTTGAAGAGTTA+AGG + chr2_4:62597742-62597761 None:intergenic 35.0%
! CCTTAACTCTTCAAAGGTTT+TGG - chr2_4:62597739-62597758 Msa0341190:three_prime_UTR 35.0%
GTAATGAGGGATAGAAAAGA+TGG + chr2_4:62597861-62597880 None:intergenic 35.0%
GAAGCTGTTCTTCAATCAAA+AGG - chr2_4:62597913-62597932 Msa0341190:CDS 35.0%
!!! GGTTTAAAAACCTGGTTTTG+GGG + chr2_4:62597960-62597979 None:intergenic 35.0%
!! GGGTTTAAAAACCTGGTTTT+GGG + chr2_4:62597961-62597980 None:intergenic 35.0%
! TGGGTTTAAAAACCTGGTTT+TGG + chr2_4:62597962-62597981 None:intergenic 35.0%
! TGTGCTTTAAGCCATTTGAT+GGG + chr2_4:62597981-62598000 None:intergenic 35.0%
TCACCAAATCCCAAAATCAT+TGG - chr2_4:62598009-62598028 Msa0341190:CDS 35.0%
CAAATCCCAAAATCATTGGT+GGG - chr2_4:62598013-62598032 Msa0341190:CDS 35.0%
! GAAAACCCACCAATGATTTT+GGG + chr2_4:62598021-62598040 None:intergenic 35.0%
! AGAAAACCCACCAATGATTT+TGG + chr2_4:62598022-62598041 None:intergenic 35.0%
CTCAAGAAGATTATACCTCT+TGG - chr2_4:62598240-62598259 Msa0341190:intron 35.0%
CAAAAAAACATCATCCCAAG+AGG + chr2_4:62598258-62598277 None:intergenic 35.0%
GCCCCAAAAAAAGCAATAAA+AGG + chr2_4:62598474-62598493 None:intergenic 35.0%
!!! ATTGCTTTTTTTGGGGCTTT+TGG - chr2_4:62598477-62598496 Msa0341190:intron 35.0%
!!! TTGCTTTTTTTGGGGCTTTT+GGG - chr2_4:62598478-62598497 Msa0341190:intron 35.0%
GATAACCTTCTTAGTATCCT+TGG - chr2_4:62598549-62598568 Msa0341190:intron 35.0%
CGCTTGCAATTATGAGAATT+TGG - chr2_4:62598589-62598608 Msa0341190:intron 35.0%
TTTATGTCATGGCTGAATTG+TGG - chr2_4:62598625-62598644 Msa0341190:intron 35.0%
TTATGTCATGGCTGAATTGT+GGG - chr2_4:62598626-62598645 Msa0341190:intron 35.0%
! GTGATTTCTGTTCTGTTTTG+GGG - chr2_4:62598657-62598676 Msa0341190:intron 35.0%
!! TGATTTCTGTTCTGTTTTGG+GGG - chr2_4:62598658-62598677 Msa0341190:intron 35.0%
AGATACATGCTATCATGTGA+CGG - chr2_4:62599181-62599200 Msa0341190:CDS 35.0%
GTTTCCATAAGTAGTTGTTC+AGG - chr2_4:62599448-62599467 Msa0341190:intron 35.0%
AAAGCCTGAACAACTACTTA+TGG + chr2_4:62599455-62599474 None:intergenic 35.0%
!! CAATGCTCATCATTGCTTTT+AGG + chr2_4:62599703-62599722 None:intergenic 35.0%
TTATCTGCTTCCTTTATTGG+TGG - chr2_4:62599741-62599760 Msa0341190:intron 35.0%
TATCTGCTTCCTTTATTGGT+GGG - chr2_4:62599742-62599761 Msa0341190:intron 35.0%
AATTGTTCACCCACCAATAA+AGG + chr2_4:62599754-62599773 None:intergenic 35.0%
ATGAGCAACTATATGGACAA+TGG + chr2_4:62599836-62599855 None:intergenic 35.0%
CAGTACAATGAGCAACTATA+TGG + chr2_4:62599843-62599862 None:intergenic 35.0%
TGAGACAAAAATGTAAGCAG+TGG + chr2_4:62599869-62599888 None:intergenic 35.0%
! TCCAATTTTATCGGATAGGA+TGG - chr2_4:62599991-62600010 Msa0341190:intron 35.0%
TCCATCCTATCCGATAAAAT+TGG + chr2_4:62599995-62600014 None:intergenic 35.0%
! AGCTTTCTAGTCTTCGATTT+CGG + chr2_4:62600228-62600247 None:intergenic 35.0%
CTAGAAAGCTAGCACAAAAT+AGG - chr2_4:62600238-62600257 Msa0341190:CDS 35.0%
AATAGGTACTTTACGGAGTA+TGG - chr2_4:62600255-62600274 Msa0341190:CDS 35.0%
! ATGTAGTACTGAACAGCTAA+TGG - chr2_4:62600278-62600297 Msa0341190:intron 35.0%
ACATCGTTATGGATTCTTTC+AGG - chr2_4:62600518-62600537 Msa0341190:intron 35.0%
TAAAAGACGAGTACTCATTC+GGG + chr2_4:62600786-62600805 None:intergenic 35.0%
! GAATGAGTACTCGTCTTTTA+TGG - chr2_4:62600786-62600805 Msa0341190:intron 35.0%
! CTTGCTGAATATGTTTTGCA+AGG + chr2_4:62601034-62601053 None:intergenic 35.0%
CGGATCAAATAAACTGTACT+TGG + chr2_4:62601061-62601080 None:intergenic 35.0%
ATTTGATCCGTGCAAAGAAA+TGG - chr2_4:62601071-62601090 Msa0341190:intron 35.0%
CAGGAGATGTAACAAATGAA+TGG + chr2_4:62601303-62601322 None:intergenic 35.0%
TACTGCTATAAACACCTGTA+AGG - chr2_4:62601326-62601345 Msa0341190:CDS 35.0%
! AAGCTATTCTAGAGAGATTG+CGG + chr2_4:62601414-62601433 None:intergenic 35.0%
! AATTTCTTGCTGTAGGTCAA+AGG - chr2_4:62601582-62601601 Msa0341190:CDS 35.0%
! ATTTCTTGCTGTAGGTCAAA+GGG - chr2_4:62601583-62601602 Msa0341190:CDS 35.0%
! CAGTTCATGATCCTAACTTT+TGG - chr2_4:62601666-62601685 Msa0341190:CDS 35.0%
TAGCTAGTGAACCAAAAGTT+AGG + chr2_4:62601680-62601699 None:intergenic 35.0%
AGCTAATTCAACTCCATACT+TGG - chr2_4:62601695-62601714 Msa0341190:CDS 35.0%
GCTAATTCAACTCCATACTT+GGG - chr2_4:62601696-62601715 Msa0341190:CDS 35.0%
!! TTTTGGTGATTGTTCTTGCA+TGG - chr2_4:62601727-62601746 Msa0341190:CDS 35.0%
ACTGAGAATGAAGATGAAGA+TGG - chr2_4:62601855-62601874 Msa0341190:CDS 35.0%
TCACCTGCTTCTGTATATAA+AGG + chr2_4:62601891-62601910 None:intergenic 35.0%
!! AGATTCAGATGGACTAATGA+AGG + chr2_4:62601916-62601935 None:intergenic 35.0%
TGTCCACCTTAACTCTTCAA+AGG - chr2_4:62597733-62597752 Msa0341190:three_prime_UTR 40.0%
! CTGTGCTTTAAGCCATTTGA+TGG + chr2_4:62597982-62598001 None:intergenic 40.0%
!!! CCACCAATGATTTTGGGATT+TGG + chr2_4:62598015-62598034 None:intergenic 40.0%
CCAAATCCCAAAATCATTGG+TGG - chr2_4:62598012-62598031 Msa0341190:CDS 40.0%
!! TGATGGTGAAGCAGTTTTTG+AGG - chr2_4:62598170-62598189 Msa0341190:CDS 40.0%
AACATGGGTGAATCTTCCTA+TGG - chr2_4:62598371-62598390 Msa0341190:intron 40.0%
GTGAATCTTCCTATGGCTAT+TGG - chr2_4:62598378-62598397 Msa0341190:intron 40.0%
GGGTGAATATAGTTGCTAAG+AGG + chr2_4:62598516-62598535 None:intergenic 40.0%
GGTTATCAGCAAATGCTTGA+GGG + chr2_4:62598536-62598555 None:intergenic 40.0%
AGGTTATCAGCAAATGCTTG+AGG + chr2_4:62598537-62598556 None:intergenic 40.0%
TATGTCATGGCTGAATTGTG+GGG - chr2_4:62598627-62598646 Msa0341190:intron 40.0%
ACTTCAAGATGAGCTAGTTC+AGG + chr2_4:62599480-62599499 None:intergenic 40.0%
AAGCGATTCTATCCACTGTT+TGG - chr2_4:62599575-62599594 Msa0341190:intron 40.0%
TTCTATCCACTGTTTGGACT+TGG - chr2_4:62599581-62599600 Msa0341190:intron 40.0%
AATGTTGCCCTTGTATTCTC+CGG - chr2_4:62599608-62599627 Msa0341190:intron 40.0%
! AAAGTATTTGACTGTCCGAC+CGG + chr2_4:62599630-62599649 None:intergenic 40.0%
TCTAGTCTGAGGGAAACTTT+AGG - chr2_4:62599650-62599669 Msa0341190:intron 40.0%
!! CATCATTGCTTTTAGGGAGA+TGG + chr2_4:62599696-62599715 None:intergenic 40.0%
! GCAATGATGAGCATTGTTGT+CGG - chr2_4:62599707-62599726 Msa0341190:intron 40.0%
! ATGAGCATTGTTGTCGGTAT+GGG - chr2_4:62599713-62599732 Msa0341190:intron 40.0%
! ACAGCTAATGGAAAGCATAC+AGG - chr2_4:62600290-62600309 Msa0341190:intron 40.0%
ATGGTGCAAATTAGCACGAA+AGG + chr2_4:62600340-62600359 None:intergenic 40.0%
TTTCAGGAGAAGCCGAAAAT+GGG - chr2_4:62600534-62600553 Msa0341190:intron 40.0%
! CTCTCCATTGTTCCCATTTT+CGG + chr2_4:62600549-62600568 None:intergenic 40.0%
TCCATATGCAACCACTAATG+TGG + chr2_4:62600613-62600632 None:intergenic 40.0%
GAAATCAAAGCTCAAAGCTC+AGG - chr2_4:62600662-62600681 Msa0341190:intron 40.0%
! ATTTCCAGAGGTGTGTATGA+GGG + chr2_4:62600748-62600767 None:intergenic 40.0%
! AATTTCCAGAGGTGTGTATG+AGG + chr2_4:62600749-62600768 None:intergenic 40.0%
GCACCTGTTATTGGAAAGTT+TGG - chr2_4:62600973-62600992 Msa0341190:intron 40.0%
ACATATACAGCAGCTAGCAA+TGG + chr2_4:62601006-62601025 None:intergenic 40.0%
TTGCTAGCTGCTGTATATGT+TGG - chr2_4:62601006-62601025 Msa0341190:intron 40.0%
ATGTAGGCCATTTCTTTGCA+CGG + chr2_4:62601081-62601100 None:intergenic 40.0%
GAAGAGAAGAGTTCAAACCT+TGG + chr2_4:62601121-62601140 None:intergenic 40.0%
GGTGTTTATAGCAGTAGTTC+AGG + chr2_4:62601322-62601341 None:intergenic 40.0%
!! TGGAGTATTAAGGCCTTGTT+TGG + chr2_4:62601509-62601528 None:intergenic 40.0%
TGGGTTGCATACAACATCAA+TGG + chr2_4:62601616-62601635 None:intergenic 40.0%
GATGTTGTATGCAACCCATT+AGG - chr2_4:62601618-62601637 Msa0341190:CDS 40.0%
TGCAACCCATTAGGAAAATC+TGG - chr2_4:62601627-62601646 Msa0341190:CDS 40.0%
AACCCATTAGGAAAATCTGG+TGG - chr2_4:62601630-62601649 Msa0341190:CDS 40.0%
! CACCACCAGATTTTCCTAAT+GGG + chr2_4:62601635-62601654 None:intergenic 40.0%
AATTCAACTCCATACTTGGG+AGG - chr2_4:62601699-62601718 Msa0341190:CDS 40.0%
AAACTGAGTGTCAAGTGACT+TGG + chr2_4:62601763-62601782 None:intergenic 40.0%
AGAAGAACTCGAGAAAGAGT+TGG - chr2_4:62601800-62601819 Msa0341190:CDS 40.0%
GGAAAGAGAAACTGCTGTTA+AGG - chr2_4:62601821-62601840 Msa0341190:CDS 40.0%
TCTTCATTCTCAGTCAACAC+TGG + chr2_4:62601849-62601868 None:intergenic 40.0%
GCACCTTTATATACAGAAGC+AGG - chr2_4:62601885-62601904 Msa0341190:CDS 40.0%
TGAGGAGTTCAAGATTCAGA+TGG + chr2_4:62601927-62601946 None:intergenic 40.0%
!! TCACTCATGAAAGAAGTGTC+TGG - chr2_4:62602007-62602026 Msa0341190:five_prime_UTR 40.0%
TGAGGGATAGAAAAGATGGG+TGG + chr2_4:62597857-62597876 None:intergenic 45.0%
!!! AACCTGGTTTTGGGGTTTGT+GGG + chr2_4:62597952-62597971 None:intergenic 45.0%
!!! AAACCTGGTTTTGGGGTTTG+TGG + chr2_4:62597953-62597972 None:intergenic 45.0%
! GTTCTTGTTGTGACTGCTAG+AGG - chr2_4:62598318-62598337 Msa0341190:intron 45.0%
TTCTTAGTATCCTTGGACCG+CGG - chr2_4:62598556-62598575 Msa0341190:intron 45.0%
ATGTCATGGCTGAATTGTGG+GGG - chr2_4:62598628-62598647 Msa0341190:intron 45.0%
GAATCGCTTTGCCTCATCAA+CGG + chr2_4:62599564-62599583 None:intergenic 45.0%
GGAGAATACAAGGGCAACAT+TGG + chr2_4:62599609-62599628 None:intergenic 45.0%
ACTTTAGGTCCTGGAGTTGA+TGG - chr2_4:62599665-62599684 Msa0341190:intron 45.0%
! GATGAGCATTGTTGTCGGTA+TGG - chr2_4:62599712-62599731 Msa0341190:intron 45.0%
!! TTTTTCTTCTGGCTACGAGC+GGG + chr2_4:62599788-62599807 None:intergenic 45.0%
!! CTTTTTCTTCTGGCTACGAG+CGG + chr2_4:62599789-62599808 None:intergenic 45.0%
CTACTACACCACACTACACT+CGG + chr2_4:62600074-62600093 None:intergenic 45.0%
GTGTAGTGTGGTGTAGTAGT+TGG - chr2_4:62600075-62600094 Msa0341190:CDS 45.0%
GTGTAGTAGTTGGCACTTCT+AGG - chr2_4:62600085-62600104 Msa0341190:CDS 45.0%
! TCCAGTTGTTTGGGGTACTA+CGG - chr2_4:62600131-62600150 Msa0341190:CDS 45.0%
CGTTTAGCTGGCTAAGTTGT+CGG + chr2_4:62600175-62600194 None:intergenic 45.0%
! CCATTTGGGTATCGTTTAGC+TGG + chr2_4:62600187-62600206 None:intergenic 45.0%
CCAGCTAAACGATACCCAAA+TGG - chr2_4:62600184-62600203 Msa0341190:CDS 45.0%
TTCGATTTCGGTTAAGCAGC+GGG + chr2_4:62600216-62600235 None:intergenic 45.0%
CTTCGATTTCGGTTAAGCAG+CGG + chr2_4:62600217-62600236 None:intergenic 45.0%
AAAGCATACAGGATCTGTCC+CGG - chr2_4:62600301-62600320 Msa0341190:intron 45.0%
CTTTCAGGAGAAGCCGAAAA+TGG - chr2_4:62600533-62600552 Msa0341190:intron 45.0%
GAAGCCGAAAATGGGAACAA+TGG - chr2_4:62600542-62600561 Msa0341190:intron 45.0%
AAGGGATCTTGCCACATTAG+TGG - chr2_4:62600599-62600618 Msa0341190:intron 45.0%
GCCACATTAGTGGTTGCATA+TGG - chr2_4:62600609-62600628 Msa0341190:intron 45.0%
GGAAACTGCACAATTTCCAG+AGG + chr2_4:62600760-62600779 None:intergenic 45.0%
GCTTACAAGCATCATCGTGA+AGG + chr2_4:62600842-62600861 None:intergenic 45.0%
AACTCCAGTCATAAGCAGGA+CGG + chr2_4:62600917-62600936 None:intergenic 45.0%
AACCAACTCCAGTCATAAGC+AGG + chr2_4:62600921-62600940 None:intergenic 45.0%
TTTCCAATAACAGGTGCGAG+TGG + chr2_4:62600970-62600989 None:intergenic 45.0%
AGAAATGGCCTACATACCCT+TGG - chr2_4:62601086-62601105 Msa0341190:intron 45.0%
! ATCCTCATCCAAGGGTATGT+AGG + chr2_4:62601097-62601116 None:intergenic 45.0%
ACCTTGGTATCCTCATCCAA+GGG + chr2_4:62601105-62601124 None:intergenic 45.0%
AACCTTGGTATCCTCATCCA+AGG + chr2_4:62601106-62601125 None:intergenic 45.0%
! AAACACCTGTAAGGCCGTTT+TGG - chr2_4:62601335-62601354 Msa0341190:CDS 45.0%
! GCACCACCAGATTTTCCTAA+TGG + chr2_4:62601636-62601655 None:intergenic 45.0%
! AAAAGCACACCTCCCAAGTA+TGG + chr2_4:62601711-62601730 None:intergenic 45.0%
!! ATACTTGGGAGGTGTGCTTT+TGG - chr2_4:62601710-62601729 Msa0341190:CDS 45.0%
TTCCCACAAACCCCAAAACC+AGG - chr2_4:62597947-62597966 Msa0341190:CDS 50.0%
AAAGCTGAAGCAGCTTCTGC+TGG - chr2_4:62598129-62598148 Msa0341190:CDS 50.0%
GCGGTCCAAGGATACTAAGA+AGG + chr2_4:62598557-62598576 None:intergenic 50.0%
ACATGCTATCATGTGACGGC+TGG - chr2_4:62599185-62599204 Msa0341190:CDS 50.0%
GCAGATAACCACCGTTGATG+AGG - chr2_4:62599550-62599569 Msa0341190:intron 50.0%
TTGGCTCCAAGTCCAAACAG+TGG + chr2_4:62599590-62599609 None:intergenic 50.0%
TTGCCCTTGTATTCTCCGGT+CGG - chr2_4:62599612-62599631 Msa0341190:intron 50.0%
TGTCCGACCGGAGAATACAA+GGG + chr2_4:62599618-62599637 None:intergenic 50.0%
CTGAGGGAAACTTTAGGTCC+TGG - chr2_4:62599656-62599675 Msa0341190:intron 50.0%
!! TAGGTCCTGGAGTTGATGGT+TGG - chr2_4:62599669-62599688 Msa0341190:intron 50.0%
!! AGGTCCTGGAGTTGATGGTT+GGG - chr2_4:62599670-62599689 Msa0341190:intron 50.0%
CGCTCGTAGCCAGAAGAAAA+AGG - chr2_4:62599787-62599806 Msa0341190:intron 50.0%
ACTGGACCACTCCAGTTGTT+TGG - chr2_4:62600121-62600140 Msa0341190:CDS 50.0%
CTGGACCACTCCAGTTGTTT+GGG - chr2_4:62600122-62600141 Msa0341190:CDS 50.0%
TGGACCACTCCAGTTGTTTG+GGG - chr2_4:62600123-62600142 Msa0341190:CDS 50.0%
AGTACCCCAAACAACTGGAG+TGG + chr2_4:62600130-62600149 None:intergenic 50.0%
TCCGTAGTACCCCAAACAAC+TGG + chr2_4:62600135-62600154 None:intergenic 50.0%
! GCTAAGTTGTCGGCTGTCAT+TGG + chr2_4:62600165-62600184 None:intergenic 50.0%
TCGATTTCGGTTAAGCAGCG+GGG + chr2_4:62600215-62600234 None:intergenic 50.0%
ATACAGGATCTGTCCCGGAA+GGG - chr2_4:62600306-62600325 Msa0341190:intron 50.0%
! AAAGGCAAAGTGTCCCTTCC+GGG + chr2_4:62600322-62600341 None:intergenic 50.0%
! GAAAGGCAAAGTGTCCCTTC+CGG + chr2_4:62600323-62600342 None:intergenic 50.0%
TTCTCCCTCATACACACCTC+TGG - chr2_4:62600741-62600760 Msa0341190:intron 50.0%
GAAGGTAGCGATTCCAGTTG+CGG + chr2_4:62600824-62600843 None:intergenic 50.0%
GTCCTGCTTATGACTGGAGT+TGG - chr2_4:62600916-62600935 Msa0341190:intron 50.0%
GATCCACTCGCACCTGTTAT+TGG - chr2_4:62600964-62600983 Msa0341190:intron 50.0%
ACCCTTGGATGAGGATACCA+AGG - chr2_4:62601101-62601120 Msa0341190:intron 50.0%
! CTTGCTGTAGGTCAAAGGGA+AGG - chr2_4:62601587-62601606 Msa0341190:CDS 50.0%
TTCTTCTTCGCGACGCAATG+CGG + chr2_4:62601787-62601806 None:intergenic 50.0%
GAAGCAGCTTCTGCTGGTGT+TGG - chr2_4:62598135-62598154 Msa0341190:CDS 55.0%
!! GCTTCTGCTGGTGTTGGTTC+TGG - chr2_4:62598141-62598160 Msa0341190:CDS 55.0%
!! TCTGCTGGTGTTGGTTCTGG+TGG - chr2_4:62598144-62598163 Msa0341190:CDS 55.0%
!! GTTGGTTCTGGTGGTGGTGA+TGG - chr2_4:62598153-62598172 Msa0341190:CDS 55.0%
ATCCTTGGACCGCGGTTTCT+TGG - chr2_4:62598564-62598583 Msa0341190:intron 55.0%
!!! GTTTTGGGGGCTTGCCAATC+AGG - chr2_4:62598671-62598690 Msa0341190:intron 55.0%
TCGCTTTGCCTCATCAACGG+TGG + chr2_4:62599561-62599580 None:intergenic 55.0%
CTGTCCGACCGGAGAATACA+AGG + chr2_4:62599619-62599638 None:intergenic 55.0%
ATGGCCCAACCATCAACTCC+AGG + chr2_4:62599677-62599696 None:intergenic 55.0%
AAGCTCCCTTCACTCTGCCA+GGG - chr2_4:62600014-62600033 Msa0341190:intron 55.0%
GTGTAGAGCCGAGTGTAGTG+TGG - chr2_4:62600063-62600082 Msa0341190:CDS 55.0%
AGTGGTCCAGTAGCTGGGAA+GGG + chr2_4:62600112-62600131 None:intergenic 55.0%
ACTGGAGTGGTCCAGTAGCT+GGG + chr2_4:62600117-62600136 None:intergenic 55.0%
AACTGGAGTGGTCCAGTAGC+TGG + chr2_4:62600118-62600137 None:intergenic 55.0%
! TGTCGGCTGTCATTGGCAGA+GGG + chr2_4:62600158-62600177 None:intergenic 55.0%
! TTGTCGGCTGTCATTGGCAG+AGG + chr2_4:62600159-62600178 None:intergenic 55.0%
GCAGCGGGGTTTGACCATTT+GGG + chr2_4:62600201-62600220 None:intergenic 55.0%
AGCAGCGGGGTTTGACCATT+TGG + chr2_4:62600202-62600221 None:intergenic 55.0%
CATACAGGATCTGTCCCGGA+AGG - chr2_4:62600305-62600324 Msa0341190:intron 55.0%
GACGAGTACTCATTCGGGCT+AGG + chr2_4:62600781-62600800 None:intergenic 55.0%
GGCGATTTCTCAACCGCAAC+TGG - chr2_4:62600808-62600827 Msa0341190:intron 55.0%
CCAGTCATAAGCAGGACGGT+AGG + chr2_4:62600913-62600932 None:intergenic 55.0%
CCTACCGTCCTGCTTATGAC+TGG - chr2_4:62600910-62600929 Msa0341190:intron 55.0%
GGCCTACATACCCTTGGATG+AGG - chr2_4:62601092-62601111 Msa0341190:intron 55.0%
GCTCTCCAAAACGGCCTTAC+AGG + chr2_4:62601343-62601362 None:intergenic 55.0%
!! GCTGGTGTTGGTTCTGGTGG+TGG - chr2_4:62598147-62598166 Msa0341190:CDS 60.0%
GACCAAGAAACCGCGGTCCA+AGG + chr2_4:62598569-62598588 None:intergenic 60.0%
GCAAGCGGACCAAGAAACCG+CGG + chr2_4:62598576-62598595 None:intergenic 60.0%
! TTCTGGCTACGAGCGGGAAG+AGG + chr2_4:62599782-62599801 None:intergenic 60.0%
GAAGCTCCCTTCACTCTGCC+AGG - chr2_4:62600013-62600032 Msa0341190:intron 60.0%
CCAGTCCCTGGCAGAGTGAA+GGG + chr2_4:62600022-62600041 None:intergenic 60.0%
TCCAGTCCCTGGCAGAGTGA+AGG + chr2_4:62600023-62600042 None:intergenic 60.0%
ACTCTGCCAGGGACTGGACA+GGG - chr2_4:62600025-62600044 Msa0341190:intron 60.0%
GTGGTCCAGTAGCTGGGAAG+GGG + chr2_4:62600111-62600130 None:intergenic 60.0%
GAGTGGTCCAGTAGCTGGGA+AGG + chr2_4:62600113-62600132 None:intergenic 60.0%
CCCTTCACTCTGCCAGGGAC+TGG - chr2_4:62600019-62600038 Msa0341190:intron 65.0%
CACTCTGCCAGGGACTGGAC+AGG - chr2_4:62600024-62600043 Msa0341190:intron 65.0%
CTCTGCCAGGGACTGGACAG+GGG - chr2_4:62600026-62600045 Msa0341190:intron 65.0%
GCTAACCCCTGTCCAGTCCC+TGG + chr2_4:62600034-62600053 None:intergenic 65.0%
CTAGGCCCCTTCCCAGCTAC+TGG - chr2_4:62600103-62600122 Msa0341190:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 62597721 62602123 62597721 ID=Msa0341190;Name=Msa0341190
chr2_4 mRNA 62597721 62602123 62597721 ID=Msa0341190-mRNA-1;Parent=Msa0341190;Name=Msa0341190-mRNA-1;_AED=0.02;_eAED=0.02;_QI=189|1|1|1|1|1|5|185|623
chr2_4 exon 62597721 62598247 62597721 ID=Msa0341190-mRNA-1:exon:19958;Parent=Msa0341190-mRNA-1
chr2_4 exon 62598722 62599069 62598722 ID=Msa0341190-mRNA-1:exon:19957;Parent=Msa0341190-mRNA-1
chr2_4 exon 62599161 62599304 62599161 ID=Msa0341190-mRNA-1:exon:19956;Parent=Msa0341190-mRNA-1
chr2_4 exon 62600036 62600290 62600036 ID=Msa0341190-mRNA-1:exon:19955;Parent=Msa0341190-mRNA-1
chr2_4 exon 62601152 62602123 62601152 ID=Msa0341190-mRNA-1:exon:19954;Parent=Msa0341190-mRNA-1
chr2_4 five_prime_UTR 62601935 62602123 62601935 ID=Msa0341190-mRNA-1:five_prime_utr;Parent=Msa0341190-mRNA-1
chr2_4 CDS 62601152 62601934 62601152 ID=Msa0341190-mRNA-1:cds;Parent=Msa0341190-mRNA-1
chr2_4 CDS 62600036 62600290 62600036 ID=Msa0341190-mRNA-1:cds;Parent=Msa0341190-mRNA-1
chr2_4 CDS 62599161 62599304 62599161 ID=Msa0341190-mRNA-1:cds;Parent=Msa0341190-mRNA-1
chr2_4 CDS 62598722 62599069 62598722 ID=Msa0341190-mRNA-1:cds;Parent=Msa0341190-mRNA-1
chr2_4 CDS 62597906 62598247 62597906 ID=Msa0341190-mRNA-1:cds;Parent=Msa0341190-mRNA-1
chr2_4 three_prime_UTR 62597721 62597905 62597721 ID=Msa0341190-mRNA-1:three_prime_utr;Parent=Msa0341190-mRNA-1
Gene Sequence

>Msa0341190

ATGGAAGCTGTTCTTCAATCAAAAGGGTTTCTCTCTCTTCCCACAAACCCCAAAACCAGGTTTTTAAACCCATCAAATGGCTTAAAGCACAGATTTTTCTCACCAAATCCCAAAATCATTGGTGGGTTTTCTCTAACTAATAATGGGTTGGTTAATCTCAATAGTTCTACCTTAAAAGCTAATGTCTTTGATAAAAAAGACAAAAATTTGTTCATATGCAAAGCTGAAGCAGCTTCTGCTGGTGTTGGTTCTGGTGGTGGTGATGGTGAAGCAGTTTTTGAGGAATCAGAAACTGAGAAACAAAAGTTTTTAGGTGTTAAAGTTATCACACTCAAGAAGATTATACCTCTTGGGATGATGTTTTTTTGTATCTTGTTCAATTACACAATTCTAAGAGATACAAAAGATGTTCTTGTTGTGACTGCTAGAGGAAGTAGTGCTGAGATTATACCTTTTTTGAAAACATGGGTGAATCTTCCTATGGCTATTGGTTTTATGTTGTTGTACACAAAGTTATCTAATGTTTTGTCAAAACAGGCTCTTTTTTATTCTGTTATTGTTCCTTTTATTGCTTTTTTTGGGGCTTTTGGGTTTGTTTTGTATCCTCTTAGCAACTATATTCACCCTCAAGCATTTGCTGATAACCTTCTTAGTATCCTTGGACCGCGGTTTCTTGGTCCGCTTGCAATTATGAGAATTTGGAGTTTCTGTTTATTTTATGTCATGGCTGAATTGTGGGGGAGTGTTGTGATTTCTGTTCTGTTTTGGGGGCTTGCCAATCAGATAACCACCGTTGATGAGGCAAAGCGATTCTATCCACTGTTTGGACTTGGAGCCAATGTTGCCCTTGTATTCTCCGGTCGGACAGTCAAATACTTTTCTAGTCTGAGGGAAACTTTAGGTCCTGGAGTTGATGGTTGGGCCATCTCCCTAAAAGCAATGATGAGCATTGTTGTCGGTATGGGACTTGTTATCTGCTTCCTTTATTGGTGGGTGAACAATTACGTTCCTCTTCCCGCTCGTAGCCAGAAGAAAAAGGAGAAGCCGAAAATGGGAACAATGGAGAGCTTGAAGTTCTTGATGTCTTCAAGATATATAAGGGATCTTGCCACATTAGTGGTTGCATATGGAATAAGCATTAATCTTGTTGAAGTTACATGGAAATCAAAGCTCAAAGCTCAGTTTCCTAGCCCGAATGAGTACTCGTCTTTTATGGGCGATTTCTCAACCGCAACTGGAATCGCTACCTTCACGATGATGCTTGTAAGCCAATTTATATTCAACAAATATGGATGGGGAGTTGCTGCGACGATCACACCTACCGTCCTGCTTATGACTGGAGTTGGTTTCTTTTCTCTCATATTATTCGGCGATCCACTCGCACCTGTTATTGGAAAGTTTGGATTGACTCCATTGCTAGCTGCTGTATATGTTGGTGCCTTGCAAAACATATTCAGCAAGAGTGCCAAGTACAGTTTATTTGATCCGTGCAAAGAAATGGCCTACATACCCTTGGATGAGGATACCAAGGTCAAAGGGAAGGCAGCCATTGATGTTGTATGCAACCCATTAGGAAAATCTGGTGGTGCTCTAATTCAGCAGTTCATGATCCTAACTTTTGGTTCACTAGCTAATTCAACTCCATACTTGGGAGGTGTGCTTTTGGTGATTGTTCTTGCATGGTTAGCAGCAGCCAAGTCACTTGACACTCAGTTTACCGCATTGCGTCGCGAAGAAGAACTCGAGAAAGAGTTGGAAAGAGAAACTGCTGTTAAGGTACCAGTGTTGACTGAGAATGAAGATGAAGATGGTTCTGTTGCACCTTTATATACAGAAGCAGGTGACTCCTTCATTAGTCCATCTGAATCTTGA

Protein sequence

>Msa0341190

MEAVLQSKGFLSLPTNPKTRFLNPSNGLKHRFFSPNPKIIGGFSLTNNGLVNLNSSTLKANVFDKKDKNLFICKAEAASAGVGSGGGDGEAVFEESETEKQKFLGVKVITLKKIIPLGMMFFCILFNYTILRDTKDVLVVTARGSSAEIIPFLKTWVNLPMAIGFMLLYTKLSNVLSKQALFYSVIVPFIAFFGAFGFVLYPLSNYIHPQAFADNLLSILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGLANQITTVDEAKRFYPLFGLGANVALVFSGRTVKYFSSLRETLGPGVDGWAISLKAMMSIVVGMGLVICFLYWWVNNYVPLPARSQKKKEKPKMGTMESLKFLMSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLVSQFIFNKYGWGVAATITPTVLLMTGVGFFSLILFGDPLAPVIGKFGLTPLLAAVYVGALQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKGKAAIDVVCNPLGKSGGALIQQFMILTFGSLANSTPYLGGVLLVIVLAWLAAAKSLDTQFTALRREEELEKELERETAVKVPVLTENEDEDGSVAPLYTEAGDSFISPSES*