AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0738890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0738890 MtrunA17_Chr5g0438511 68.715 179 37 3 1 163 1 176 5.22e-43 140
Msa0738890 MtrunA17_Chr5g0438491 80.000 50 7 1 1 47 1 50 1.43e-13 64.7
Msa0738890 MtrunA17_Chr5g0438481 77.551 49 8 1 1 46 1 49 8.75e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 72 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTGTTTAAATGTGATATT+TGG 0.199569 5_1:+56972483 None:intergenic
AACTTCCTCTGATGCCAAAA+AGG 0.230354 5_1:-56972375 Msa0738890:CDS
TCCTTTAAAATATATGAATT+AGG 0.232146 5_1:-56971336 Msa0738890:three_prime_UTR
ATGTCCACCACCACCATATT+TGG 0.302002 5_1:+56971748 Msa0738900:intron
ATTGTGGTAACCGCCATATT+TGG 0.317393 5_1:+56971946 Msa0738900:three_prime_UTR
GAAGTAAACGATGCCAAATA+TGG 0.333960 5_1:-56971959 Msa0738890:CDS
GAAGTAAACGATGCCAAATA+TGG 0.342429 5_1:-56971761 Msa0738890:CDS
GGTGGTGGTGGACATTACTA+TGG 0.428994 5_1:-56971740 Msa0738890:CDS
AATGGTGGTGGACATTACTA+TGG 0.429163 5_1:-56971905 Msa0738890:CDS
GGAGGGAAAGAGTGATATGT+AGG 0.433161 5_1:+56972552 None:intergenic
TGGTTCTTCTTGTGTCAGCT+AGG 0.433566 5_1:-56972409 Msa0738890:CDS
GAAGTGTGCTCTATATATAA+TGG 0.448305 5_1:+56972531 None:intergenic
GATATGTAGGGACCTTTACT+TGG 0.450596 5_1:+56972565 None:intergenic
AATCCTCATCCTAGGCCTCT+TGG 0.458683 5_1:-56972435 Msa0738890:CDS
GAACCATTGCCAAGAGGCCT+AGG 0.460802 5_1:+56972426 None:intergenic
GGTGGTTCTCACCATGGTGG+AGG 0.471933 5_1:-56971695 Msa0738890:CDS
GGTGGTTCTCACGGTGGAGG+TGG 0.475576 5_1:-56971881 Msa0738890:CDS
GGTTCTCACCATGGTGGAGG+TGG 0.480643 5_1:-56971692 Msa0738890:CDS
GGTGGTTCTCACCACGGTGG+AGG 0.484853 5_1:-56971716 Msa0738890:CDS
GGTGGTTCTCACCACGGTGG+AGG 0.484853 5_1:-56971863 Msa0738890:CDS
CATCCTAGGCCTCTTGGCAA+TGG 0.496291 5_1:-56972429 Msa0738890:CDS
GGAGGTGGTTCTCACGGTGG+AGG 0.512830 5_1:-56971884 Msa0738890:CDS
GGTTCTTCTTGTGTCAGCTA+GGG 0.514897 5_1:-56972408 Msa0738890:CDS
GGTTCTCACCACGGTGGAGG+TGG 0.520241 5_1:-56971713 Msa0738890:CDS
GGTTCTCACCACGGTGGAGG+TGG 0.520241 5_1:-56971860 Msa0738890:CDS
TACTATGGAGGTGGTTCTCA+CGG 0.525230 5_1:-56971890 Msa0738890:CDS
ATTCAGCATGTGAGCAGCAA+TGG 0.536032 5_1:+56971648 Msa0738900:CDS
TTGCCAAGAGGCCTAGGATG+AGG 0.538496 5_1:+56972432 None:intergenic
GGTAATTACCACAATGGTGG+TGG 0.547595 5_1:-56971917 Msa0738890:CDS
CATGTGAGCAGCAATGGCCG+TGG 0.551382 5_1:+56971654 Msa0738900:CDS
TTAAATGTGATATTTGGTAG+TGG 0.552948 5_1:+56972489 None:intergenic
GGCGGTTACCACAATGGTGG+TGG 0.554658 5_1:-56971938 Msa0738890:CDS
GGTGGACATTACTATGGAGG+TGG 0.556814 5_1:-56971734 Msa0738890:CDS
GGTGGACATTACTATGGAGG+TGG 0.556814 5_1:-56971899 Msa0738890:CDS
CATATGAGCAGCAATGGCCG+TGG 0.561023 5_1:+56971822 Msa0738900:CDS
CTTTCTGAACTACCAAGTAA+AGG 0.572070 5_1:-56972577 Msa0738890:five_prime_UTR
GATGCCAAATATGGTGGTGG+TGG 0.593462 5_1:-56971752 Msa0738890:CDS
GTTTGTTGCCGTGCAAGCTG+AGG 0.597485 5_1:-56971795 Msa0738890:CDS
GGTTGCCATTACTATTGCCA+CGG 0.599690 5_1:-56971671 Msa0738890:CDS
AATGGCCGTGGCAATAGTAA+TGG 0.601894 5_1:+56971666 Msa0738900:CDS
AAATATGGCGGTTACCACAA+TGG 0.601953 5_1:-56971944 Msa0738890:CDS
ACTCGGCATATGAGCAGCAA+TGG 0.602148 5_1:+56971816 Msa0738900:CDS
AGCTTGCACGGCAACAAACT+CGG 0.602417 5_1:+56971799 Msa0738900:intron
GGTAATTACCACCACCATTG+TGG 0.604720 5_1:+56971930 Msa0738900:three_prime_UTR
GGTGGAGGTGGTTCTCACCA+TGG 0.610718 5_1:-56971701 Msa0738890:CDS
GAGGGAAAGAGTGATATGTA+GGG 0.612466 5_1:+56972553 None:intergenic
TTTAAACAGATATTGAACAA+TGG 0.612680 5_1:-56972471 Msa0738890:exon
GGTTGCCATCACTATTGCCA+CGG 0.613013 5_1:-56971839 Msa0738890:CDS
GTGTGCTCTATATATAATGG+AGG 0.615419 5_1:+56972534 None:intergenic
AATGGCCGTGGCAATAGTGA+TGG 0.615442 5_1:+56971834 Msa0738900:exon
AACGATGCCAAATATGGTGG+TGG 0.628814 5_1:-56971755 Msa0738890:CDS
GGTGGAGGTGGTTCTCACCA+CGG 0.641021 5_1:-56971869 Msa0738890:CDS
AGTAATGTCCACCACCATTG+TGG 0.641701 5_1:+56971909 Msa0738900:three_prime_UTR
GGTGGTGGACATTACTATGG+AGG 0.647255 5_1:-56971737 Msa0738890:CDS
TATGGAGGTGGTTCTCACCA+CGG 0.648357 5_1:-56971722 Msa0738890:CDS
TGTGCTCTATATATAATGGA+GGG 0.654334 5_1:+56972535 None:intergenic
GGAGGTGGTTCTCACCATGG+TGG 0.655820 5_1:-56971698 Msa0738890:CDS
ATTTGTTGCCGTGCAAGCTG+AGG 0.673816 5_1:-56971627 Msa0738890:CDS
CAAGAAGAACCATTGCCAAG+AGG 0.674082 5_1:+56972420 None:intergenic
AATGGCAACCACCTCCACCA+TGG 0.681347 5_1:+56971684 Msa0738900:CDS
GGTGGTAATTACCACAATGG+TGG 0.685453 5_1:-56971920 Msa0738890:CDS
GGTGGTGGACATTACTATGG+AGG 0.685934 5_1:-56971902 Msa0738890:CDS
GTAAACGATGCCAAATATGG+CGG 0.688367 5_1:-56971956 Msa0738890:CDS
TATGGAGGTGGTTCTCACGG+TGG 0.695015 5_1:-56971887 Msa0738890:CDS
GGAGGTGGTTCTCACCACGG+TGG 0.700953 5_1:-56971866 Msa0738890:CDS
ATCACACTATGTATGTGTGA+TGG 0.703321 5_1:-56971418 Msa0738890:three_prime_UTR
TATGGCGGTTACCACAATGG+TGG 0.720585 5_1:-56971941 Msa0738890:CDS
GGTGGTGGTAATTACCACAA+TGG 0.736293 5_1:-56971923 Msa0738890:CDS
GTAAACGATGCCAAATATGG+TGG 0.739461 5_1:-56971758 Msa0738890:CDS
GGAGGTGGTTCTCACCACGG+TGG 0.747901 5_1:-56971719 Msa0738890:CDS
GGTGAGAACCACCTCCACCG+TGG 0.755651 5_1:+56971705 Msa0738900:CDS
GATGGCAACCACCTCCACCG+TGG 0.756569 5_1:+56971852 Msa0738900:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCCTTTAAAATATATGAATT+AGG - chr5_1:56972565-56972584 Msa0738890:five_prime_UTR 15.0%
!!! ACCTAATTCATATATTTTAA+AGG + chr5_1:56972569-56972588 None:intergenic 15.0%
!!! TCCTTTAAAATATATGAATT+AGG - chr5_1:56972565-56972584 Msa0738890:five_prime_UTR 15.0%
!!! ACCTAATTCATATATTTTAA+AGG + chr5_1:56972569-56972588 None:intergenic 15.0%
!! ATCTGTTTAAATGTGATATT+TGG + chr5_1:56971421-56971440 None:intergenic 20.0%
!! TTTAAACAGATATTGAACAA+TGG - chr5_1:56971430-56971449 Msa0738890:three_prime_UTR 20.0%
!! CGTATGTATATAAAATGTAA+TGG - chr5_1:56971877-56971896 Msa0738890:CDS 20.0%
!! ATCTGTTTAAATGTGATATT+TGG + chr5_1:56971421-56971440 None:intergenic 20.0%
!! TTTAAACAGATATTGAACAA+TGG - chr5_1:56971430-56971449 Msa0738890:three_prime_UTR 20.0%
!! CGTATGTATATAAAATGTAA+TGG - chr5_1:56971877-56971896 Msa0738890:CDS 20.0%
! TTAAATGTGATATTTGGTAG+TGG + chr5_1:56971415-56971434 None:intergenic 25.0%
!! TTGAACAATGGATTCAAAAA+AGG - chr5_1:56971442-56971461 Msa0738890:three_prime_UTR 25.0%
!!! ACTGCTAGCTTTATAAAATA+AGG - chr5_1:56971783-56971802 Msa0738890:CDS 25.0%
! CATATATATTATGTTTGCAG+AGG - chr5_1:56971902-56971921 Msa0738890:CDS 25.0%
!!! GTTTGTGAGTTGATAAAAAA+AGG - chr5_1:56972377-56972396 Msa0738890:CDS 25.0%
! TTAAATGTGATATTTGGTAG+TGG + chr5_1:56971415-56971434 None:intergenic 25.0%
!! TTGAACAATGGATTCAAAAA+AGG - chr5_1:56971442-56971461 Msa0738890:three_prime_UTR 25.0%
!!! ACTGCTAGCTTTATAAAATA+AGG - chr5_1:56971783-56971802 Msa0738890:CDS 25.0%
! CATATATATTATGTTTGCAG+AGG - chr5_1:56971902-56971921 Msa0738890:CDS 25.0%
!!! GTTTGTGAGTTGATAAAAAA+AGG - chr5_1:56972377-56972396 Msa0738890:CDS 25.0%
! TGTGCTCTATATATAATGGA+GGG + chr5_1:56971369-56971388 None:intergenic 30.0%
GAAGTGTGCTCTATATATAA+TGG + chr5_1:56971373-56971392 None:intergenic 30.0%
! TGTGCTCTATATATAATGGA+GGG + chr5_1:56971369-56971388 None:intergenic 30.0%
GAAGTGTGCTCTATATATAA+TGG + chr5_1:56971373-56971392 None:intergenic 30.0%
CTTTCTGAACTACCAAGTAA+AGG - chr5_1:56971324-56971343 Msa0738890:three_prime_UTR 35.0%
GTGTGCTCTATATATAATGG+AGG + chr5_1:56971370-56971389 None:intergenic 35.0%
GAAGTAAACGATGCCAAATA+TGG - chr5_1:56971942-56971961 Msa0738890:CDS 35.0%
GAAGTAAACGATGCCAAATA+TGG - chr5_1:56971942-56971961 Msa0738890:CDS 35.0%
ATCACACTATGTATGTGTGA+TGG - chr5_1:56972483-56972502 Msa0738890:five_prime_UTR 35.0%
CTTTCTGAACTACCAAGTAA+AGG - chr5_1:56971324-56971343 Msa0738890:three_prime_UTR 35.0%
GTGTGCTCTATATATAATGG+AGG + chr5_1:56971370-56971389 None:intergenic 35.0%
GAAGTAAACGATGCCAAATA+TGG - chr5_1:56971942-56971961 Msa0738890:CDS 35.0%
GAAGTAAACGATGCCAAATA+TGG - chr5_1:56971942-56971961 Msa0738890:CDS 35.0%
ATCACACTATGTATGTGTGA+TGG - chr5_1:56972483-56972502 Msa0738890:five_prime_UTR 35.0%
GATATGTAGGGACCTTTACT+TGG + chr5_1:56971339-56971358 None:intergenic 40.0%
GAGGGAAAGAGTGATATGTA+GGG + chr5_1:56971351-56971370 None:intergenic 40.0%
AAAAAGGCAATCCTCATCCT+AGG - chr5_1:56971458-56971477 Msa0738890:three_prime_UTR 40.0%
AACTTCCTCTGATGCCAAAA+AGG - chr5_1:56971526-56971545 Msa0738890:three_prime_UTR 40.0%
ACTTCCTCTGATGCCAAAAA+GGG - chr5_1:56971527-56971546 Msa0738890:three_prime_UTR 40.0%
! AGAGTAGAACTCACCCTTTT+TGG + chr5_1:56971543-56971562 None:intergenic 40.0%
GTAAACGATGCCAAATATGG+CGG - chr5_1:56971945-56971964 Msa0738890:CDS 40.0%
ATTGTGGTAACCGCCATATT+TGG + chr5_1:56971958-56971977 Msa0738900:three_prime_UTR 40.0%
AAATATGGCGGTTACCACAA+TGG - chr5_1:56971957-56971976 Msa0738890:CDS 40.0%
!! AATGGTGGTGGACATTACTA+TGG - chr5_1:56971996-56972015 Msa0738890:intron 40.0%
GTAAACGATGCCAAATATGG+TGG - chr5_1:56971945-56971964 Msa0738890:CDS 40.0%
! GTGATGAGCTTTTGCAAAAG+TGG - chr5_1:56972505-56972524 Msa0738890:five_prime_UTR 40.0%
GATATGTAGGGACCTTTACT+TGG + chr5_1:56971339-56971358 None:intergenic 40.0%
GAGGGAAAGAGTGATATGTA+GGG + chr5_1:56971351-56971370 None:intergenic 40.0%
AAAAAGGCAATCCTCATCCT+AGG - chr5_1:56971458-56971477 Msa0738890:three_prime_UTR 40.0%
AACTTCCTCTGATGCCAAAA+AGG - chr5_1:56971526-56971545 Msa0738890:three_prime_UTR 40.0%
ACTTCCTCTGATGCCAAAAA+GGG - chr5_1:56971527-56971546 Msa0738890:three_prime_UTR 40.0%
! AGAGTAGAACTCACCCTTTT+TGG + chr5_1:56971543-56971562 None:intergenic 40.0%
GTAAACGATGCCAAATATGG+CGG - chr5_1:56971945-56971964 Msa0738890:CDS 40.0%
ATTGTGGTAACCGCCATATT+TGG + chr5_1:56971958-56971977 Msa0738900:three_prime_UTR 40.0%
AAATATGGCGGTTACCACAA+TGG - chr5_1:56971957-56971976 Msa0738890:CDS 40.0%
!! AATGGTGGTGGACATTACTA+TGG - chr5_1:56971996-56972015 Msa0738890:intron 40.0%
GTAAACGATGCCAAATATGG+TGG - chr5_1:56971945-56971964 Msa0738890:CDS 40.0%
! GTGATGAGCTTTTGCAAAAG+TGG - chr5_1:56972505-56972524 Msa0738890:five_prime_UTR 40.0%
GGAGGGAAAGAGTGATATGT+AGG + chr5_1:56971352-56971371 None:intergenic 45.0%
CAAGAAGAACCATTGCCAAG+AGG + chr5_1:56971484-56971503 None:intergenic 45.0%
TGGTTCTTCTTGTGTCAGCT+AGG - chr5_1:56971492-56971511 Msa0738890:three_prime_UTR 45.0%
GGTTCTTCTTGTGTCAGCTA+GGG - chr5_1:56971493-56971512 Msa0738890:three_prime_UTR 45.0%
GGTAATTACCACCACCATTG+TGG + chr5_1:56971974-56971993 Msa0738900:three_prime_UTR 45.0%
! GGTGGTGGTAATTACCACAA+TGG - chr5_1:56971978-56971997 Msa0738890:CDS 45.0%
GGTGGTAATTACCACAATGG+TGG - chr5_1:56971981-56972000 Msa0738890:CDS 45.0%
GGTAATTACCACAATGGTGG+TGG - chr5_1:56971984-56972003 Msa0738890:intron 45.0%
AGTAATGTCCACCACCATTG+TGG + chr5_1:56971995-56972014 None:intergenic 45.0%
TACTATGGAGGTGGTTCTCA+CGG - chr5_1:56972011-56972030 Msa0738890:intron 45.0%
! AGTCTTTTCCTCAGCTTGCA+CGG + chr5_1:56972117-56972136 None:intergenic 45.0%
AACGATGCCAAATATGGTGG+TGG - chr5_1:56972146-56972165 Msa0738890:intron 45.0%
ATGTCCACCACCACCATATT+TGG + chr5_1:56972156-56972175 None:intergenic 45.0%
GGTTGCCATTACTATTGCCA+CGG - chr5_1:56972230-56972249 Msa0738890:intron 45.0%
AATGGCCGTGGCAATAGTAA+TGG + chr5_1:56972238-56972257 None:intergenic 45.0%
ATTCAGCATGTGAGCAGCAA+TGG + chr5_1:56972256-56972275 None:intergenic 45.0%
!! AGTTTTGTCCTCAGCTTGCA+CGG + chr5_1:56972285-56972304 None:intergenic 45.0%
GGAGGGAAAGAGTGATATGT+AGG + chr5_1:56971352-56971371 None:intergenic 45.0%
CAAGAAGAACCATTGCCAAG+AGG + chr5_1:56971484-56971503 None:intergenic 45.0%
TGGTTCTTCTTGTGTCAGCT+AGG - chr5_1:56971492-56971511 Msa0738890:three_prime_UTR 45.0%
GGTTCTTCTTGTGTCAGCTA+GGG - chr5_1:56971493-56971512 Msa0738890:three_prime_UTR 45.0%
GGTAATTACCACCACCATTG+TGG + chr5_1:56971974-56971993 Msa0738900:three_prime_UTR 45.0%
! GGTGGTGGTAATTACCACAA+TGG - chr5_1:56971978-56971997 Msa0738890:CDS 45.0%
GGTGGTAATTACCACAATGG+TGG - chr5_1:56971981-56972000 Msa0738890:CDS 45.0%
GGTAATTACCACAATGGTGG+TGG - chr5_1:56971984-56972003 Msa0738890:intron 45.0%
AGTAATGTCCACCACCATTG+TGG + chr5_1:56971995-56972014 None:intergenic 45.0%
TACTATGGAGGTGGTTCTCA+CGG - chr5_1:56972011-56972030 Msa0738890:intron 45.0%
! AGTCTTTTCCTCAGCTTGCA+CGG + chr5_1:56972117-56972136 None:intergenic 45.0%
AACGATGCCAAATATGGTGG+TGG - chr5_1:56972146-56972165 Msa0738890:intron 45.0%
ATGTCCACCACCACCATATT+TGG + chr5_1:56972156-56972175 None:intergenic 45.0%
GGTTGCCATTACTATTGCCA+CGG - chr5_1:56972230-56972249 Msa0738890:intron 45.0%
AATGGCCGTGGCAATAGTAA+TGG + chr5_1:56972238-56972257 None:intergenic 45.0%
ATTCAGCATGTGAGCAGCAA+TGG + chr5_1:56972256-56972275 None:intergenic 45.0%
!! AGTTTTGTCCTCAGCTTGCA+CGG + chr5_1:56972285-56972304 None:intergenic 45.0%
AATCCTCATCCTAGGCCTCT+TGG - chr5_1:56971466-56971485 Msa0738890:three_prime_UTR 50.0%
!! CTCACCCTTTTTGGCATCAG+AGG + chr5_1:56971534-56971553 None:intergenic 50.0%
TATGGCGGTTACCACAATGG+TGG - chr5_1:56971960-56971979 Msa0738890:CDS 50.0%
!! GGTGGTGGACATTACTATGG+AGG - chr5_1:56971999-56972018 Msa0738890:intron 50.0%
GGTGGACATTACTATGGAGG+TGG - chr5_1:56972002-56972021 Msa0738890:intron 50.0%
GGTTGCCATCACTATTGCCA+CGG - chr5_1:56972062-56972081 Msa0738890:intron 50.0%
AATGGCCGTGGCAATAGTGA+TGG + chr5_1:56972070-56972089 None:intergenic 50.0%
ACTCGGCATATGAGCAGCAA+TGG + chr5_1:56972088-56972107 None:intergenic 50.0%
AGCTTGCACGGCAACAAACT+CGG + chr5_1:56972105-56972124 None:intergenic 50.0%
!! GATGCCAAATATGGTGGTGG+TGG - chr5_1:56972149-56972168 Msa0738890:intron 50.0%
!! GGTGGTGGTGGACATTACTA+TGG - chr5_1:56972161-56972180 Msa0738890:intron 50.0%
!! GGTGGTGGACATTACTATGG+AGG - chr5_1:56971999-56972018 Msa0738890:intron 50.0%
GGTGGACATTACTATGGAGG+TGG - chr5_1:56972002-56972021 Msa0738890:intron 50.0%
TATGGAGGTGGTTCTCACCA+CGG - chr5_1:56972179-56972198 Msa0738890:intron 50.0%
! ATTTGTTGCCGTGCAAGCTG+AGG - chr5_1:56972274-56972293 Msa0738890:intron 50.0%
AATCCTCATCCTAGGCCTCT+TGG - chr5_1:56971466-56971485 Msa0738890:three_prime_UTR 50.0%
!! CTCACCCTTTTTGGCATCAG+AGG + chr5_1:56971534-56971553 None:intergenic 50.0%
TATGGCGGTTACCACAATGG+TGG - chr5_1:56971960-56971979 Msa0738890:CDS 50.0%
!! GGTGGTGGACATTACTATGG+AGG - chr5_1:56971999-56972018 Msa0738890:intron 50.0%
GGTGGACATTACTATGGAGG+TGG - chr5_1:56972002-56972021 Msa0738890:intron 50.0%
GGTTGCCATCACTATTGCCA+CGG - chr5_1:56972062-56972081 Msa0738890:intron 50.0%
AATGGCCGTGGCAATAGTGA+TGG + chr5_1:56972070-56972089 None:intergenic 50.0%
ACTCGGCATATGAGCAGCAA+TGG + chr5_1:56972088-56972107 None:intergenic 50.0%
AGCTTGCACGGCAACAAACT+CGG + chr5_1:56972105-56972124 None:intergenic 50.0%
!! GATGCCAAATATGGTGGTGG+TGG - chr5_1:56972149-56972168 Msa0738890:intron 50.0%
!! GGTGGTGGTGGACATTACTA+TGG - chr5_1:56972161-56972180 Msa0738890:intron 50.0%
!! GGTGGTGGACATTACTATGG+AGG - chr5_1:56971999-56972018 Msa0738890:intron 50.0%
GGTGGACATTACTATGGAGG+TGG - chr5_1:56972002-56972021 Msa0738890:intron 50.0%
TATGGAGGTGGTTCTCACCA+CGG - chr5_1:56972179-56972198 Msa0738890:intron 50.0%
! ATTTGTTGCCGTGCAAGCTG+AGG - chr5_1:56972274-56972293 Msa0738890:intron 50.0%
TTGCCAAGAGGCCTAGGATG+AGG + chr5_1:56971472-56971491 None:intergenic 55.0%
CATCCTAGGCCTCTTGGCAA+TGG - chr5_1:56971472-56971491 Msa0738890:three_prime_UTR 55.0%
GAACCATTGCCAAGAGGCCT+AGG + chr5_1:56971478-56971497 None:intergenic 55.0%
TATGGAGGTGGTTCTCACGG+TGG - chr5_1:56972014-56972033 Msa0738890:intron 55.0%
CATATGAGCAGCAATGGCCG+TGG + chr5_1:56972082-56972101 None:intergenic 55.0%
! GTTTGTTGCCGTGCAAGCTG+AGG - chr5_1:56972106-56972125 Msa0738890:intron 55.0%
AATGGCAACCACCTCCACCA+TGG + chr5_1:56972220-56972239 None:intergenic 55.0%
TTGCCAAGAGGCCTAGGATG+AGG + chr5_1:56971472-56971491 None:intergenic 55.0%
CATCCTAGGCCTCTTGGCAA+TGG - chr5_1:56971472-56971491 Msa0738890:three_prime_UTR 55.0%
GAACCATTGCCAAGAGGCCT+AGG + chr5_1:56971478-56971497 None:intergenic 55.0%
TATGGAGGTGGTTCTCACGG+TGG - chr5_1:56972014-56972033 Msa0738890:intron 55.0%
CATATGAGCAGCAATGGCCG+TGG + chr5_1:56972082-56972101 None:intergenic 55.0%
! GTTTGTTGCCGTGCAAGCTG+AGG - chr5_1:56972106-56972125 Msa0738890:intron 55.0%
AATGGCAACCACCTCCACCA+TGG + chr5_1:56972220-56972239 None:intergenic 55.0%
GGCGGTTACCACAATGGTGG+TGG - chr5_1:56971963-56971982 Msa0738890:CDS 60.0%
GGTGGAGGTGGTTCTCACCA+CGG - chr5_1:56972032-56972051 Msa0738890:intron 60.0%
GGTGGAGGTGGTTCTCACCA+TGG - chr5_1:56972032-56972051 Msa0738890:intron 60.0%
GGAGGTGGTTCTCACCATGG+TGG - chr5_1:56972203-56972222 Msa0738890:intron 60.0%
GGTGGTTCTCACCATGGTGG+AGG - chr5_1:56972206-56972225 Msa0738890:intron 60.0%
! GGTTCTCACCATGGTGGAGG+TGG - chr5_1:56972209-56972228 Msa0738890:intron 60.0%
CATGTGAGCAGCAATGGCCG+TGG + chr5_1:56972250-56972269 None:intergenic 60.0%
GGCGGTTACCACAATGGTGG+TGG - chr5_1:56971963-56971982 Msa0738890:CDS 60.0%
GGTGGAGGTGGTTCTCACCA+CGG - chr5_1:56972032-56972051 Msa0738890:intron 60.0%
GGTGGAGGTGGTTCTCACCA+TGG - chr5_1:56972032-56972051 Msa0738890:intron 60.0%
GGAGGTGGTTCTCACCATGG+TGG - chr5_1:56972203-56972222 Msa0738890:intron 60.0%
GGTGGTTCTCACCATGGTGG+AGG - chr5_1:56972206-56972225 Msa0738890:intron 60.0%
! GGTTCTCACCATGGTGGAGG+TGG - chr5_1:56972209-56972228 Msa0738890:intron 60.0%
CATGTGAGCAGCAATGGCCG+TGG + chr5_1:56972250-56972269 None:intergenic 60.0%
GGAGGTGGTTCTCACGGTGG+AGG - chr5_1:56972017-56972036 Msa0738890:intron 65.0%
GGTGGTTCTCACGGTGGAGG+TGG - chr5_1:56972020-56972039 Msa0738890:intron 65.0%
GGAGGTGGTTCTCACCACGG+TGG - chr5_1:56972035-56972054 Msa0738890:intron 65.0%
GGTGGTTCTCACCACGGTGG+AGG - chr5_1:56972038-56972057 Msa0738890:intron 65.0%
GGTTCTCACCACGGTGGAGG+TGG - chr5_1:56972041-56972060 Msa0738890:intron 65.0%
GATGGCAACCACCTCCACCG+TGG + chr5_1:56972052-56972071 None:intergenic 65.0%
GGAGGTGGTTCTCACCACGG+TGG - chr5_1:56972035-56972054 Msa0738890:intron 65.0%
GGTGGTTCTCACCACGGTGG+AGG - chr5_1:56972038-56972057 Msa0738890:intron 65.0%
GGTTCTCACCACGGTGGAGG+TGG - chr5_1:56972041-56972060 Msa0738890:intron 65.0%
GGTGAGAACCACCTCCACCG+TGG + chr5_1:56972031-56972050 None:intergenic 65.0%
GGAGGTGGTTCTCACGGTGG+AGG - chr5_1:56972017-56972036 Msa0738890:intron 65.0%
GGTGGTTCTCACGGTGGAGG+TGG - chr5_1:56972020-56972039 Msa0738890:intron 65.0%
GGAGGTGGTTCTCACCACGG+TGG - chr5_1:56972035-56972054 Msa0738890:intron 65.0%
GGTGGTTCTCACCACGGTGG+AGG - chr5_1:56972038-56972057 Msa0738890:intron 65.0%
GGTTCTCACCACGGTGGAGG+TGG - chr5_1:56972041-56972060 Msa0738890:intron 65.0%
GATGGCAACCACCTCCACCG+TGG + chr5_1:56972052-56972071 None:intergenic 65.0%
GGAGGTGGTTCTCACCACGG+TGG - chr5_1:56972035-56972054 Msa0738890:intron 65.0%
GGTGGTTCTCACCACGGTGG+AGG - chr5_1:56972038-56972057 Msa0738890:intron 65.0%
GGTTCTCACCACGGTGGAGG+TGG - chr5_1:56972041-56972060 Msa0738890:intron 65.0%
GGTGAGAACCACCTCCACCG+TGG + chr5_1:56972031-56972050 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 56971305 56972618 56971305 ID=Msa0738890;Name=Msa0738890
chr5_1 mRNA 56971305 56972618 56971305 ID=Msa0738890-mRNA-1;Parent=Msa0738890;Name=Msa0738890-mRNA-1;_AED=0.00;_eAED=0.00;_QI=144|1|1|1|1|1|2|305|163
chr5_1 exon 56971305 56972001 56971305 ID=Msa0738890-mRNA-1:exon:16105;Parent=Msa0738890-mRNA-1
chr5_1 exon 56972375 56972618 56972375 ID=Msa0738890-mRNA-1:exon:16104;Parent=Msa0738890-mRNA-1
chr5_1 five_prime_UTR 56972475 56972618 56972475 ID=Msa0738890-mRNA-1:five_prime_utr;Parent=Msa0738890-mRNA-1
chr5_1 CDS 56972375 56972474 56972375 ID=Msa0738890-mRNA-1:cds;Parent=Msa0738890-mRNA-1
chr5_1 CDS 56971610 56972001 56971610 ID=Msa0738890-mRNA-1:cds;Parent=Msa0738890-mRNA-1
chr5_1 three_prime_UTR 56971305 56971609 56971305 ID=Msa0738890-mRNA-1:three_prime_utr;Parent=Msa0738890-mRNA-1
Gene Sequence

>Msa0738890

ATGGATTCAAAAAAGGCAATCCTCATCCTAGGCCTCTTGGCAATGGTTCTTCTTGTGTCAGCTAGGGACTTAACTGAAACTTCCTCTGATGCCAAAAAGGAGGTTGTTGAAAAGACTAATGAAGTAAACGATGCCAAATATGGCGGTTACCACAATGGTGGTGGTAATTACCACAATGGTGGTGGACATTACTATGGAGGTGGTTCTCACGGTGGAGGTGGTTCTCACCACGGTGGAGGTGGTTGCCATCACTATTGCCACGGCCATTGCTGCTCATATGCCGAGTTTGTTGCCGTGCAAGCTGAGGAAAAGACTAATGAAGTAAACGATGCCAAATATGGTGGTGGTGGACATTACTATGGAGGTGGTTCTCACCACGGTGGAGGTGGTTCTCACCATGGTGGAGGTGGTTGCCATTACTATTGCCACGGCCATTGCTGCTCACATGCTGAATTTGTTGCCGTGCAAGCTGAGGACAAAACTCAGAACTGA
Protein sequence

>Msa0738890

MDSKKAILILGLLAMVLLVSARDLTETSSDAKKEVVEKTNEVNDAKYGGYHNGGGNYHNGGGHYYGGGSHGGGGSHHGGGGCHHYCHGHCCSYAEFVAVQAEEKTNEVNDAKYGGGGHYYGGGSHHGGGGSHHGGGGCHYYCHGHCCSHAEFVAVQAEDKTQN*