Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859490 | XP_003616815.1 | 68.715 | 179 | 37 | 3 | 1 | 163 | 1 | 176 | 5.68e-39 | 140 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859490 | sp|O22612|DRM2_PEA | 68.000 | 50 | 5 | 2 | 1 | 46 | 1 | 43 | 6.73e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859490 | G7K7E3 | 68.715 | 179 | 37 | 3 | 1 | 163 | 1 | 176 | 2.71e-39 | 140 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0738860 | Msa0859490 | 0.809189 | 2.140237e-50 | -8.615850e-47 |
| Msa0738880 | Msa0859490 | 0.862522 | 4.773605e-64 | -8.615850e-47 |
| Msa0738890 | Msa0859490 | 0.993897 | 4.968580e-203 | -8.615850e-47 |
| Msa0738900 | Msa0859490 | 0.940414 | 2.430480e-100 | -8.615850e-47 |
| Msa0783280 | Msa0859490 | 0.800598 | 1.336874e-48 | -8.615850e-47 |
| Msa0783290 | Msa0859490 | 0.859942 | 2.917660e-63 | -8.615850e-47 |
| Msa0819320 | Msa0859490 | 0.851929 | 6.441551e-61 | -8.615850e-47 |
| Msa0819360 | Msa0859490 | 0.824245 | 8.959932e-54 | -8.615850e-47 |
| Msa0819370 | Msa0859490 | 0.861261 | 1.161948e-63 | -8.615850e-47 |
| Msa0819380 | Msa0859490 | 0.985952 | 3.408664e-165 | -8.615850e-47 |
| Msa0819390 | Msa0859490 | 0.935201 | 1.230286e-96 | -8.615850e-47 |
| Msa0121960 | Msa0859490 | 0.800193 | 1.616253e-48 | -8.615850e-47 |
| Msa0295580 | Msa0859490 | 0.807826 | 4.180732e-50 | -8.615850e-47 |
| Msa0859490 | Msa0859500 | 0.885464 | 7.953400e-72 | -8.615850e-47 |
| Msa0859490 | Msa0859510 | 0.850641 | 1.488963e-60 | -8.615850e-47 |
| Msa0859490 | Msa0859520 | 0.823597 | 1.271725e-53 | -8.615850e-47 |
| Msa0859490 | Msa0859530 | 0.834561 | 2.791344e-56 | -8.615850e-47 |
| Msa0859490 | Msa1022610 | 0.818468 | 1.930170e-52 | -8.615850e-47 |
| Msa0859490 | Msa1030870 | 0.801886 | 7.286099e-49 | -8.615850e-47 |
| Msa0859490 | Msa1106770 | 0.801355 | 9.363975e-49 | -8.615850e-47 |
| Msa0859490 | Msa1354090 | 0.801149 | 1.031610e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859490 | MtrunA17_Chr5g0438511 | 68.715 | 179 | 37 | 3 | 1 | 163 | 1 | 176 | 5.22e-43 | 140 |
| Msa0859490 | MtrunA17_Chr5g0438491 | 80.000 | 50 | 7 | 1 | 1 | 47 | 1 | 50 | 1.43e-13 | 64.7 |
| Msa0859490 | MtrunA17_Chr5g0438481 | 77.551 | 49 | 8 | 1 | 1 | 46 | 1 | 49 | 8.75e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 65 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTGTTTAAATGTGATATT+TGG | 0.199569 | 5_4:-57812220 | None:intergenic |
| AACTTCCTCTGATGCCAAAA+AGG | 0.230354 | 5_4:+57812328 | Msa0859490:CDS |
| TCCTTTAAAATATATGAATT+AGG | 0.232146 | 5_4:+57813352 | Msa0859490:three_prime_UTR |
| ATGTCCACCACCACCATATT+TGG | 0.302002 | 5_4:-57812943 | Msa0859500:intron |
| ATTGTGGTAACCGCCATATT+TGG | 0.317393 | 5_4:-57812745 | Msa0859500:CDS |
| GAAGTAAACGATGCCAAATA+TGG | 0.333960 | 5_4:+57812732 | Msa0859490:CDS |
| GAAGTAAACGATGCCAAATA+TGG | 0.342429 | 5_4:+57812930 | Msa0859490:CDS |
| GGTGGTGGTGGACATTACTA+TGG | 0.428994 | 5_4:+57812951 | Msa0859490:CDS |
| AATGGTGGTGGACATTACTA+TGG | 0.429163 | 5_4:+57812786 | Msa0859490:CDS |
| TGGTTCTTCTTGTGTCAGCT+AGG | 0.433566 | 5_4:+57812294 | Msa0859490:CDS |
| AATCCTCATCCTAGGCCTCT+TGG | 0.458683 | 5_4:+57812268 | Msa0859490:CDS |
| GAACCATTGCCAAGAGGCCT+AGG | 0.460802 | 5_4:-57812277 | None:intergenic |
| GGTGGTTCTCACCATGGTGG+AGG | 0.471933 | 5_4:+57812996 | Msa0859490:CDS |
| GGTGGTTCTCACGGTGGAGG+TGG | 0.475576 | 5_4:+57812810 | Msa0859490:CDS |
| GGTTCTCACCATGGTGGAGG+TGG | 0.480643 | 5_4:+57812999 | Msa0859490:CDS |
| GGTGGTTCTCACCACGGTGG+AGG | 0.484853 | 5_4:+57812828 | Msa0859490:CDS |
| GGTGGTTCTCACCACGGTGG+AGG | 0.484853 | 5_4:+57812975 | Msa0859490:CDS |
| CATCCTAGGCCTCTTGGCAA+TGG | 0.496291 | 5_4:+57812274 | Msa0859490:CDS |
| GGAGGTGGTTCTCACGGTGG+AGG | 0.512830 | 5_4:+57812807 | Msa0859490:CDS |
| GGTTCTTCTTGTGTCAGCTA+GGG | 0.514897 | 5_4:+57812295 | Msa0859490:CDS |
| GGTTCTCACCACGGTGGAGG+TGG | 0.520241 | 5_4:+57812831 | Msa0859490:CDS |
| GGTTCTCACCACGGTGGAGG+TGG | 0.520241 | 5_4:+57812978 | Msa0859490:CDS |
| TACTATGGAGGTGGTTCTCA+CGG | 0.525230 | 5_4:+57812801 | Msa0859490:CDS |
| ATTCAGCATGTGAGCAGCAA+TGG | 0.536032 | 5_4:-57813043 | None:intergenic |
| TTGCCAAGAGGCCTAGGATG+AGG | 0.538496 | 5_4:-57812271 | None:intergenic |
| GGTAATTACCACAATGGTGG+TGG | 0.547595 | 5_4:+57812774 | Msa0859490:CDS |
| CATGTGAGCAGCAATGGCCG+TGG | 0.551382 | 5_4:-57813037 | None:intergenic |
| TTAAATGTGATATTTGGTAG+TGG | 0.552948 | 5_4:-57812214 | None:intergenic |
| GGCGGTTACCACAATGGTGG+TGG | 0.554658 | 5_4:+57812753 | Msa0859490:CDS |
| GGTGGACATTACTATGGAGG+TGG | 0.556814 | 5_4:+57812792 | Msa0859490:CDS |
| GGTGGACATTACTATGGAGG+TGG | 0.556814 | 5_4:+57812957 | Msa0859490:CDS |
| CATATGAGCAGCAATGGCCG+TGG | 0.561023 | 5_4:-57812869 | Msa0859500:CDS |
| GATGCCAAATATGGTGGTGG+TGG | 0.593462 | 5_4:+57812939 | Msa0859490:CDS |
| GTTTGTTGCCGTGCAAGCTG+AGG | 0.597485 | 5_4:+57812896 | Msa0859490:CDS |
| GGTTGCCATTACTATTGCCA+CGG | 0.599690 | 5_4:+57813020 | Msa0859490:CDS |
| AATGGCCGTGGCAATAGTAA+TGG | 0.601894 | 5_4:-57813025 | Msa0859500:CDS |
| AAATATGGCGGTTACCACAA+TGG | 0.601953 | 5_4:+57812747 | Msa0859490:CDS |
| ACTCGGCATATGAGCAGCAA+TGG | 0.602148 | 5_4:-57812875 | Msa0859500:CDS |
| AGCTTGCACGGCAACAAACT+CGG | 0.602417 | 5_4:-57812892 | Msa0859500:CDS |
| GGTAATTACCACCACCATTG+TGG | 0.604720 | 5_4:-57812761 | Msa0859500:CDS |
| GGTGGAGGTGGTTCTCACCA+TGG | 0.610718 | 5_4:+57812990 | Msa0859490:CDS |
| TTTAAACAGATATTGAACAA+TGG | 0.612680 | 5_4:+57812232 | Msa0859490:exon |
| GGTTGCCATCACTATTGCCA+CGG | 0.613013 | 5_4:+57812852 | Msa0859490:CDS |
| AATGGCCGTGGCAATAGTGA+TGG | 0.615442 | 5_4:-57812857 | Msa0859500:CDS |
| AACGATGCCAAATATGGTGG+TGG | 0.628814 | 5_4:+57812936 | Msa0859490:CDS |
| GGTGGAGGTGGTTCTCACCA+CGG | 0.641021 | 5_4:+57812822 | Msa0859490:CDS |
| AGTAATGTCCACCACCATTG+TGG | 0.641701 | 5_4:-57812782 | Msa0859500:CDS |
| GGTGGTGGACATTACTATGG+AGG | 0.647255 | 5_4:+57812954 | Msa0859490:CDS |
| TATGGAGGTGGTTCTCACCA+CGG | 0.648357 | 5_4:+57812969 | Msa0859490:CDS |
| GGAGGTGGTTCTCACCATGG+TGG | 0.655820 | 5_4:+57812993 | Msa0859490:CDS |
| ATTTGTTGCCGTGCAAGCTG+AGG | 0.673816 | 5_4:+57813064 | Msa0859490:CDS |
| CAAGAAGAACCATTGCCAAG+AGG | 0.674082 | 5_4:-57812283 | None:intergenic |
| AATGGCAACCACCTCCACCA+TGG | 0.681347 | 5_4:-57813007 | Msa0859500:CDS |
| GGTGGTAATTACCACAATGG+TGG | 0.685453 | 5_4:+57812771 | Msa0859490:CDS |
| GGTGGTGGACATTACTATGG+AGG | 0.685934 | 5_4:+57812789 | Msa0859490:CDS |
| GTAAACGATGCCAAATATGG+CGG | 0.688367 | 5_4:+57812735 | Msa0859490:CDS |
| TATGGAGGTGGTTCTCACGG+TGG | 0.695015 | 5_4:+57812804 | Msa0859490:CDS |
| GGAGGTGGTTCTCACCACGG+TGG | 0.700953 | 5_4:+57812825 | Msa0859490:CDS |
| ATCACACTATGTATGTGTGA+TGG | 0.703321 | 5_4:+57813270 | Msa0859490:three_prime_UTR |
| TATGGCGGTTACCACAATGG+TGG | 0.720585 | 5_4:+57812750 | Msa0859490:CDS |
| GGTGGTGGTAATTACCACAA+TGG | 0.736293 | 5_4:+57812768 | Msa0859490:CDS |
| GTAAACGATGCCAAATATGG+TGG | 0.739461 | 5_4:+57812933 | Msa0859490:CDS |
| GGAGGTGGTTCTCACCACGG+TGG | 0.747901 | 5_4:+57812972 | Msa0859490:CDS |
| GGTGAGAACCACCTCCACCG+TGG | 0.755651 | 5_4:-57812986 | Msa0859500:intron |
| GATGGCAACCACCTCCACCG+TGG | 0.756569 | 5_4:-57812839 | Msa0859500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCCTTTAAAATATATGAATT+AGG | + | chr5_4:57813352-57813371 | Msa0859490:three_prime_UTR | 15.0% |
| !!! | ACCTAATTCATATATTTTAA+AGG | - | chr5_4:57813356-57813375 | None:intergenic | 15.0% |
| !!! | TCCTTTAAAATATATGAATT+AGG | + | chr5_4:57813352-57813371 | Msa0859490:three_prime_UTR | 15.0% |
| !!! | ACCTAATTCATATATTTTAA+AGG | - | chr5_4:57813356-57813375 | None:intergenic | 15.0% |
| !! | ATCTGTTTAAATGTGATATT+TGG | - | chr5_4:57812223-57812242 | None:intergenic | 20.0% |
| !! | TTTAAACAGATATTGAACAA+TGG | + | chr5_4:57812232-57812251 | Msa0859490:exon | 20.0% |
| !! | ATCTGTTTAAATGTGATATT+TGG | - | chr5_4:57812223-57812242 | None:intergenic | 20.0% |
| !! | TTTAAACAGATATTGAACAA+TGG | + | chr5_4:57812232-57812251 | Msa0859490:exon | 20.0% |
| ! | TTAAATGTGATATTTGGTAG+TGG | - | chr5_4:57812217-57812236 | None:intergenic | 25.0% |
| !! | TTGAACAATGGATTCAAAAA+AGG | + | chr5_4:57812244-57812263 | Msa0859490:exon | 25.0% |
| !!! | ACTGCTAGCTTTATAAAATA+AGG | + | chr5_4:57812573-57812592 | Msa0859490:intron | 25.0% |
| ! | CGTATGTATGTAAAATGTAA+TGG | + | chr5_4:57812667-57812686 | Msa0859490:intron | 25.0% |
| ! | CATATATATTATGTTTGCAG+AGG | + | chr5_4:57812692-57812711 | Msa0859490:intron | 25.0% |
| !!! | GTTTGTGAGTTGATAAAAAA+AGG | + | chr5_4:57813168-57813187 | Msa0859490:three_prime_UTR | 25.0% |
| ! | TTAAATGTGATATTTGGTAG+TGG | - | chr5_4:57812217-57812236 | None:intergenic | 25.0% |
| !! | TTGAACAATGGATTCAAAAA+AGG | + | chr5_4:57812244-57812263 | Msa0859490:exon | 25.0% |
| !!! | ACTGCTAGCTTTATAAAATA+AGG | + | chr5_4:57812573-57812592 | Msa0859490:intron | 25.0% |
| ! | CGTATGTATGTAAAATGTAA+TGG | + | chr5_4:57812667-57812686 | Msa0859490:intron | 25.0% |
| ! | CATATATATTATGTTTGCAG+AGG | + | chr5_4:57812692-57812711 | Msa0859490:intron | 25.0% |
| !!! | GTTTGTGAGTTGATAAAAAA+AGG | + | chr5_4:57813168-57813187 | Msa0859490:three_prime_UTR | 25.0% |
| GAAGTAAACGATGCCAAATA+TGG | + | chr5_4:57812732-57812751 | Msa0859490:CDS | 35.0% | |
| GAAGTAAACGATGCCAAATA+TGG | + | chr5_4:57812732-57812751 | Msa0859490:CDS | 35.0% | |
| ATCACACTATGTATGTGTGA+TGG | + | chr5_4:57813270-57813289 | Msa0859490:three_prime_UTR | 35.0% | |
| GAAGTAAACGATGCCAAATA+TGG | + | chr5_4:57812732-57812751 | Msa0859490:CDS | 35.0% | |
| GAAGTAAACGATGCCAAATA+TGG | + | chr5_4:57812732-57812751 | Msa0859490:CDS | 35.0% | |
| ATCACACTATGTATGTGTGA+TGG | + | chr5_4:57813270-57813289 | Msa0859490:three_prime_UTR | 35.0% | |
| AAAAAGGCAATCCTCATCCT+AGG | + | chr5_4:57812260-57812279 | Msa0859490:CDS | 40.0% | |
| AACTTCCTCTGATGCCAAAA+AGG | + | chr5_4:57812328-57812347 | Msa0859490:CDS | 40.0% | |
| ACTTCCTCTGATGCCAAAAA+GGG | + | chr5_4:57812329-57812348 | Msa0859490:CDS | 40.0% | |
| ! | AGAGTAGAACTCACCCTTTT+TGG | - | chr5_4:57812345-57812364 | None:intergenic | 40.0% |
| GTAAACGATGCCAAATATGG+CGG | + | chr5_4:57812735-57812754 | Msa0859490:CDS | 40.0% | |
| ATTGTGGTAACCGCCATATT+TGG | - | chr5_4:57812748-57812767 | Msa0859500:CDS | 40.0% | |
| AAATATGGCGGTTACCACAA+TGG | + | chr5_4:57812747-57812766 | Msa0859490:CDS | 40.0% | |
| !! | AATGGTGGTGGACATTACTA+TGG | + | chr5_4:57812786-57812805 | Msa0859490:CDS | 40.0% |
| GTAAACGATGCCAAATATGG+TGG | + | chr5_4:57812735-57812754 | Msa0859490:CDS | 40.0% | |
| ! | GTGATGAGCTTTTGCAAAAG+TGG | + | chr5_4:57813292-57813311 | Msa0859490:three_prime_UTR | 40.0% |
| AAAAAGGCAATCCTCATCCT+AGG | + | chr5_4:57812260-57812279 | Msa0859490:CDS | 40.0% | |
| AACTTCCTCTGATGCCAAAA+AGG | + | chr5_4:57812328-57812347 | Msa0859490:CDS | 40.0% | |
| ACTTCCTCTGATGCCAAAAA+GGG | + | chr5_4:57812329-57812348 | Msa0859490:CDS | 40.0% | |
| ! | AGAGTAGAACTCACCCTTTT+TGG | - | chr5_4:57812345-57812364 | None:intergenic | 40.0% |
| GTAAACGATGCCAAATATGG+CGG | + | chr5_4:57812735-57812754 | Msa0859490:CDS | 40.0% | |
| ATTGTGGTAACCGCCATATT+TGG | - | chr5_4:57812748-57812767 | Msa0859500:CDS | 40.0% | |
| AAATATGGCGGTTACCACAA+TGG | + | chr5_4:57812747-57812766 | Msa0859490:CDS | 40.0% | |
| !! | AATGGTGGTGGACATTACTA+TGG | + | chr5_4:57812786-57812805 | Msa0859490:CDS | 40.0% |
| GTAAACGATGCCAAATATGG+TGG | + | chr5_4:57812735-57812754 | Msa0859490:CDS | 40.0% | |
| ! | GTGATGAGCTTTTGCAAAAG+TGG | + | chr5_4:57813292-57813311 | Msa0859490:three_prime_UTR | 40.0% |
| CAAGAAGAACCATTGCCAAG+AGG | - | chr5_4:57812286-57812305 | None:intergenic | 45.0% | |
| TGGTTCTTCTTGTGTCAGCT+AGG | + | chr5_4:57812294-57812313 | Msa0859490:CDS | 45.0% | |
| GGTTCTTCTTGTGTCAGCTA+GGG | + | chr5_4:57812295-57812314 | Msa0859490:CDS | 45.0% | |
| GGTAATTACCACCACCATTG+TGG | - | chr5_4:57812764-57812783 | Msa0859500:CDS | 45.0% | |
| ! | GGTGGTGGTAATTACCACAA+TGG | + | chr5_4:57812768-57812787 | Msa0859490:CDS | 45.0% |
| GGTGGTAATTACCACAATGG+TGG | + | chr5_4:57812771-57812790 | Msa0859490:CDS | 45.0% | |
| GGTAATTACCACAATGGTGG+TGG | + | chr5_4:57812774-57812793 | Msa0859490:CDS | 45.0% | |
| AGTAATGTCCACCACCATTG+TGG | - | chr5_4:57812785-57812804 | Msa0859500:CDS | 45.0% | |
| TACTATGGAGGTGGTTCTCA+CGG | + | chr5_4:57812801-57812820 | Msa0859490:CDS | 45.0% | |
| ! | AGTCTTTTCCTCAGCTTGCA+CGG | - | chr5_4:57812907-57812926 | Msa0859500:intron | 45.0% |
| AACGATGCCAAATATGGTGG+TGG | + | chr5_4:57812936-57812955 | Msa0859490:CDS | 45.0% | |
| ATGTCCACCACCACCATATT+TGG | - | chr5_4:57812946-57812965 | Msa0859500:intron | 45.0% | |
| GGTTGCCATTACTATTGCCA+CGG | + | chr5_4:57813020-57813039 | Msa0859490:CDS | 45.0% | |
| AATGGCCGTGGCAATAGTAA+TGG | - | chr5_4:57813028-57813047 | None:intergenic | 45.0% | |
| ATTCAGCATGTGAGCAGCAA+TGG | - | chr5_4:57813046-57813065 | None:intergenic | 45.0% | |
| !! | AGTTTTGTCCTCAGCTTGCA+CGG | - | chr5_4:57813075-57813094 | None:intergenic | 45.0% |
| CAAGAAGAACCATTGCCAAG+AGG | - | chr5_4:57812286-57812305 | None:intergenic | 45.0% | |
| TGGTTCTTCTTGTGTCAGCT+AGG | + | chr5_4:57812294-57812313 | Msa0859490:CDS | 45.0% | |
| GGTTCTTCTTGTGTCAGCTA+GGG | + | chr5_4:57812295-57812314 | Msa0859490:CDS | 45.0% | |
| GGTAATTACCACCACCATTG+TGG | - | chr5_4:57812764-57812783 | Msa0859500:CDS | 45.0% | |
| ! | GGTGGTGGTAATTACCACAA+TGG | + | chr5_4:57812768-57812787 | Msa0859490:CDS | 45.0% |
| GGTGGTAATTACCACAATGG+TGG | + | chr5_4:57812771-57812790 | Msa0859490:CDS | 45.0% | |
| GGTAATTACCACAATGGTGG+TGG | + | chr5_4:57812774-57812793 | Msa0859490:CDS | 45.0% | |
| AGTAATGTCCACCACCATTG+TGG | - | chr5_4:57812785-57812804 | Msa0859500:CDS | 45.0% | |
| TACTATGGAGGTGGTTCTCA+CGG | + | chr5_4:57812801-57812820 | Msa0859490:CDS | 45.0% | |
| ! | AGTCTTTTCCTCAGCTTGCA+CGG | - | chr5_4:57812907-57812926 | Msa0859500:intron | 45.0% |
| AACGATGCCAAATATGGTGG+TGG | + | chr5_4:57812936-57812955 | Msa0859490:CDS | 45.0% | |
| ATGTCCACCACCACCATATT+TGG | - | chr5_4:57812946-57812965 | Msa0859500:intron | 45.0% | |
| GGTTGCCATTACTATTGCCA+CGG | + | chr5_4:57813020-57813039 | Msa0859490:CDS | 45.0% | |
| AATGGCCGTGGCAATAGTAA+TGG | - | chr5_4:57813028-57813047 | None:intergenic | 45.0% | |
| ATTCAGCATGTGAGCAGCAA+TGG | - | chr5_4:57813046-57813065 | None:intergenic | 45.0% | |
| !! | AGTTTTGTCCTCAGCTTGCA+CGG | - | chr5_4:57813075-57813094 | None:intergenic | 45.0% |
| AATCCTCATCCTAGGCCTCT+TGG | + | chr5_4:57812268-57812287 | Msa0859490:CDS | 50.0% | |
| !! | CTCACCCTTTTTGGCATCAG+AGG | - | chr5_4:57812336-57812355 | None:intergenic | 50.0% |
| TATGGCGGTTACCACAATGG+TGG | + | chr5_4:57812750-57812769 | Msa0859490:CDS | 50.0% | |
| !! | GGTGGTGGACATTACTATGG+AGG | + | chr5_4:57812789-57812808 | Msa0859490:CDS | 50.0% |
| GGTGGACATTACTATGGAGG+TGG | + | chr5_4:57812792-57812811 | Msa0859490:CDS | 50.0% | |
| GGTTGCCATCACTATTGCCA+CGG | + | chr5_4:57812852-57812871 | Msa0859490:CDS | 50.0% | |
| AATGGCCGTGGCAATAGTGA+TGG | - | chr5_4:57812860-57812879 | Msa0859500:CDS | 50.0% | |
| ACTCGGCATATGAGCAGCAA+TGG | - | chr5_4:57812878-57812897 | Msa0859500:CDS | 50.0% | |
| AGCTTGCACGGCAACAAACT+CGG | - | chr5_4:57812895-57812914 | Msa0859500:intron | 50.0% | |
| !! | GATGCCAAATATGGTGGTGG+TGG | + | chr5_4:57812939-57812958 | Msa0859490:CDS | 50.0% |
| !! | GGTGGTGGTGGACATTACTA+TGG | + | chr5_4:57812951-57812970 | Msa0859490:CDS | 50.0% |
| !! | GGTGGTGGACATTACTATGG+AGG | + | chr5_4:57812789-57812808 | Msa0859490:CDS | 50.0% |
| GGTGGACATTACTATGGAGG+TGG | + | chr5_4:57812792-57812811 | Msa0859490:CDS | 50.0% | |
| TATGGAGGTGGTTCTCACCA+CGG | + | chr5_4:57812969-57812988 | Msa0859490:CDS | 50.0% | |
| ! | ATTTGTTGCCGTGCAAGCTG+AGG | + | chr5_4:57813064-57813083 | Msa0859490:CDS | 50.0% |
| AATCCTCATCCTAGGCCTCT+TGG | + | chr5_4:57812268-57812287 | Msa0859490:CDS | 50.0% | |
| !! | CTCACCCTTTTTGGCATCAG+AGG | - | chr5_4:57812336-57812355 | None:intergenic | 50.0% |
| TATGGCGGTTACCACAATGG+TGG | + | chr5_4:57812750-57812769 | Msa0859490:CDS | 50.0% | |
| !! | GGTGGTGGACATTACTATGG+AGG | + | chr5_4:57812789-57812808 | Msa0859490:CDS | 50.0% |
| GGTGGACATTACTATGGAGG+TGG | + | chr5_4:57812792-57812811 | Msa0859490:CDS | 50.0% | |
| GGTTGCCATCACTATTGCCA+CGG | + | chr5_4:57812852-57812871 | Msa0859490:CDS | 50.0% | |
| AATGGCCGTGGCAATAGTGA+TGG | - | chr5_4:57812860-57812879 | Msa0859500:CDS | 50.0% | |
| ACTCGGCATATGAGCAGCAA+TGG | - | chr5_4:57812878-57812897 | Msa0859500:CDS | 50.0% | |
| AGCTTGCACGGCAACAAACT+CGG | - | chr5_4:57812895-57812914 | Msa0859500:intron | 50.0% | |
| !! | GATGCCAAATATGGTGGTGG+TGG | + | chr5_4:57812939-57812958 | Msa0859490:CDS | 50.0% |
| !! | GGTGGTGGTGGACATTACTA+TGG | + | chr5_4:57812951-57812970 | Msa0859490:CDS | 50.0% |
| !! | GGTGGTGGACATTACTATGG+AGG | + | chr5_4:57812789-57812808 | Msa0859490:CDS | 50.0% |
| GGTGGACATTACTATGGAGG+TGG | + | chr5_4:57812792-57812811 | Msa0859490:CDS | 50.0% | |
| TATGGAGGTGGTTCTCACCA+CGG | + | chr5_4:57812969-57812988 | Msa0859490:CDS | 50.0% | |
| ! | ATTTGTTGCCGTGCAAGCTG+AGG | + | chr5_4:57813064-57813083 | Msa0859490:CDS | 50.0% |
| TTGCCAAGAGGCCTAGGATG+AGG | - | chr5_4:57812274-57812293 | None:intergenic | 55.0% | |
| CATCCTAGGCCTCTTGGCAA+TGG | + | chr5_4:57812274-57812293 | Msa0859490:CDS | 55.0% | |
| GAACCATTGCCAAGAGGCCT+AGG | - | chr5_4:57812280-57812299 | None:intergenic | 55.0% | |
| TATGGAGGTGGTTCTCACGG+TGG | + | chr5_4:57812804-57812823 | Msa0859490:CDS | 55.0% | |
| CATATGAGCAGCAATGGCCG+TGG | - | chr5_4:57812872-57812891 | Msa0859500:CDS | 55.0% | |
| ! | GTTTGTTGCCGTGCAAGCTG+AGG | + | chr5_4:57812896-57812915 | Msa0859490:CDS | 55.0% |
| AATGGCAACCACCTCCACCA+TGG | - | chr5_4:57813010-57813029 | Msa0859500:CDS | 55.0% | |
| TTGCCAAGAGGCCTAGGATG+AGG | - | chr5_4:57812274-57812293 | None:intergenic | 55.0% | |
| CATCCTAGGCCTCTTGGCAA+TGG | + | chr5_4:57812274-57812293 | Msa0859490:CDS | 55.0% | |
| GAACCATTGCCAAGAGGCCT+AGG | - | chr5_4:57812280-57812299 | None:intergenic | 55.0% | |
| TATGGAGGTGGTTCTCACGG+TGG | + | chr5_4:57812804-57812823 | Msa0859490:CDS | 55.0% | |
| CATATGAGCAGCAATGGCCG+TGG | - | chr5_4:57812872-57812891 | Msa0859500:CDS | 55.0% | |
| ! | GTTTGTTGCCGTGCAAGCTG+AGG | + | chr5_4:57812896-57812915 | Msa0859490:CDS | 55.0% |
| AATGGCAACCACCTCCACCA+TGG | - | chr5_4:57813010-57813029 | Msa0859500:CDS | 55.0% | |
| GGCGGTTACCACAATGGTGG+TGG | + | chr5_4:57812753-57812772 | Msa0859490:CDS | 60.0% | |
| GGTGGAGGTGGTTCTCACCA+CGG | + | chr5_4:57812822-57812841 | Msa0859490:CDS | 60.0% | |
| GGTGGAGGTGGTTCTCACCA+TGG | + | chr5_4:57812822-57812841 | Msa0859490:CDS | 60.0% | |
| GGAGGTGGTTCTCACCATGG+TGG | + | chr5_4:57812993-57813012 | Msa0859490:CDS | 60.0% | |
| GGTGGTTCTCACCATGGTGG+AGG | + | chr5_4:57812996-57813015 | Msa0859490:CDS | 60.0% | |
| ! | GGTTCTCACCATGGTGGAGG+TGG | + | chr5_4:57812999-57813018 | Msa0859490:CDS | 60.0% |
| CATGTGAGCAGCAATGGCCG+TGG | - | chr5_4:57813040-57813059 | None:intergenic | 60.0% | |
| GGCGGTTACCACAATGGTGG+TGG | + | chr5_4:57812753-57812772 | Msa0859490:CDS | 60.0% | |
| GGTGGAGGTGGTTCTCACCA+CGG | + | chr5_4:57812822-57812841 | Msa0859490:CDS | 60.0% | |
| GGTGGAGGTGGTTCTCACCA+TGG | + | chr5_4:57812822-57812841 | Msa0859490:CDS | 60.0% | |
| GGAGGTGGTTCTCACCATGG+TGG | + | chr5_4:57812993-57813012 | Msa0859490:CDS | 60.0% | |
| GGTGGTTCTCACCATGGTGG+AGG | + | chr5_4:57812996-57813015 | Msa0859490:CDS | 60.0% | |
| ! | GGTTCTCACCATGGTGGAGG+TGG | + | chr5_4:57812999-57813018 | Msa0859490:CDS | 60.0% |
| CATGTGAGCAGCAATGGCCG+TGG | - | chr5_4:57813040-57813059 | None:intergenic | 60.0% | |
| GGAGGTGGTTCTCACGGTGG+AGG | + | chr5_4:57812807-57812826 | Msa0859490:CDS | 65.0% | |
| GGTGGTTCTCACGGTGGAGG+TGG | + | chr5_4:57812810-57812829 | Msa0859490:CDS | 65.0% | |
| GGAGGTGGTTCTCACCACGG+TGG | + | chr5_4:57812825-57812844 | Msa0859490:CDS | 65.0% | |
| GGTGGTTCTCACCACGGTGG+AGG | + | chr5_4:57812828-57812847 | Msa0859490:CDS | 65.0% | |
| GGTTCTCACCACGGTGGAGG+TGG | + | chr5_4:57812831-57812850 | Msa0859490:CDS | 65.0% | |
| GATGGCAACCACCTCCACCG+TGG | - | chr5_4:57812842-57812861 | Msa0859500:CDS | 65.0% | |
| GGAGGTGGTTCTCACCACGG+TGG | + | chr5_4:57812825-57812844 | Msa0859490:CDS | 65.0% | |
| GGTGGTTCTCACCACGGTGG+AGG | + | chr5_4:57812828-57812847 | Msa0859490:CDS | 65.0% | |
| GGTTCTCACCACGGTGGAGG+TGG | + | chr5_4:57812831-57812850 | Msa0859490:CDS | 65.0% | |
| GGTGAGAACCACCTCCACCG+TGG | - | chr5_4:57812821-57812840 | Msa0859500:CDS | 65.0% | |
| GGAGGTGGTTCTCACGGTGG+AGG | + | chr5_4:57812807-57812826 | Msa0859490:CDS | 65.0% | |
| GGTGGTTCTCACGGTGGAGG+TGG | + | chr5_4:57812810-57812829 | Msa0859490:CDS | 65.0% | |
| GGAGGTGGTTCTCACCACGG+TGG | + | chr5_4:57812825-57812844 | Msa0859490:CDS | 65.0% | |
| GGTGGTTCTCACCACGGTGG+AGG | + | chr5_4:57812828-57812847 | Msa0859490:CDS | 65.0% | |
| GGTTCTCACCACGGTGGAGG+TGG | + | chr5_4:57812831-57812850 | Msa0859490:CDS | 65.0% | |
| GATGGCAACCACCTCCACCG+TGG | - | chr5_4:57812842-57812861 | Msa0859500:CDS | 65.0% | |
| GGAGGTGGTTCTCACCACGG+TGG | + | chr5_4:57812825-57812844 | Msa0859490:CDS | 65.0% | |
| GGTGGTTCTCACCACGGTGG+AGG | + | chr5_4:57812828-57812847 | Msa0859490:CDS | 65.0% | |
| GGTTCTCACCACGGTGGAGG+TGG | + | chr5_4:57812831-57812850 | Msa0859490:CDS | 65.0% | |
| GGTGAGAACCACCTCCACCG+TGG | - | chr5_4:57812821-57812840 | Msa0859500:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 57812209 | 57813405 | 57812209 | ID=Msa0859490;Name=Msa0859490 |
| chr5_4 | mRNA | 57812209 | 57813405 | 57812209 | ID=Msa0859490-mRNA-1;Parent=Msa0859490;Name=Msa0859490-mRNA-1;_AED=0.00;_eAED=0.00;_QI=42|1|1|1|1|1|2|302|163 |
| chr5_4 | exon | 57812209 | 57812350 | 57812209 | ID=Msa0859490-mRNA-1:exon:17628;Parent=Msa0859490-mRNA-1 |
| chr5_4 | exon | 57812712 | 57813405 | 57812712 | ID=Msa0859490-mRNA-1:exon:17629;Parent=Msa0859490-mRNA-1 |
| chr5_4 | five_prime_UTR | 57812209 | 57812250 | 57812209 | ID=Msa0859490-mRNA-1:five_prime_utr;Parent=Msa0859490-mRNA-1 |
| chr5_4 | CDS | 57812251 | 57812350 | 57812251 | ID=Msa0859490-mRNA-1:cds;Parent=Msa0859490-mRNA-1 |
| chr5_4 | CDS | 57812712 | 57813103 | 57812712 | ID=Msa0859490-mRNA-1:cds;Parent=Msa0859490-mRNA-1 |
| chr5_4 | three_prime_UTR | 57813104 | 57813405 | 57813104 | ID=Msa0859490-mRNA-1:three_prime_utr;Parent=Msa0859490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
