Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363940 | XP_013460071.1 | 89.143 | 175 | 6 | 2 | 1 | 174 | 1 | 163 | 2.79e-79 | 243 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363940 | B7FM91 | 89.143 | 175 | 6 | 2 | 1 | 174 | 1 | 163 | 1.33e-79 | 243 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003470 | Msa0363940 | 0.851311 | 9.636794e-61 | -8.615850e-47 |
| Msa0043680 | Msa0363940 | 0.847043 | 1.484385e-59 | -8.615850e-47 |
| Msa0044240 | Msa0363940 | -0.800078 | 1.706367e-48 | -8.615850e-47 |
| Msa0065390 | Msa0363940 | 0.803054 | 4.186951e-49 | -8.615850e-47 |
| Msa0077910 | Msa0363940 | 0.804693 | 1.910699e-49 | -8.615850e-47 |
| Msa0079250 | Msa0363940 | 0.803860 | 2.849588e-49 | -8.615850e-47 |
| Msa0092660 | Msa0363940 | 0.829318 | 5.503629e-55 | -8.615850e-47 |
| Msa0092680 | Msa0363940 | 0.816479 | 5.412971e-52 | -8.615850e-47 |
| Msa0092730 | Msa0363940 | 0.829069 | 6.326119e-55 | -8.615850e-47 |
| Msa0125800 | Msa0363940 | 0.815177 | 1.056479e-51 | -8.615850e-47 |
| Msa0137600 | Msa0363940 | 0.823304 | 1.488265e-53 | -8.615850e-47 |
| Msa0146470 | Msa0363940 | 0.845722 | 3.402398e-59 | -8.615850e-47 |
| Msa0150210 | Msa0363940 | 0.819123 | 1.369741e-52 | -8.615850e-47 |
| Msa0170440 | Msa0363940 | 0.807579 | 4.718308e-50 | -8.615850e-47 |
| Msa0178940 | Msa0363940 | 0.812019 | 5.232018e-51 | -8.615850e-47 |
| Msa0185390 | Msa0363940 | 0.811445 | 6.975591e-51 | -8.615850e-47 |
| Msa0363940 | Msa0369780 | 0.800635 | 1.313842e-48 | -8.615850e-47 |
| Msa0363940 | Msa0382500 | 0.800557 | 1.362660e-48 | -8.615850e-47 |
| Msa0363940 | Msa0411520 | 0.851147 | 1.072236e-60 | -8.615850e-47 |
| Msa0363940 | Msa0416890 | -0.829316 | 5.511384e-55 | -8.615850e-47 |
| Msa0363940 | Msa0417630 | 0.824506 | 7.780497e-54 | -8.615850e-47 |
| Msa0363940 | Msa0421800 | 0.815891 | 7.326383e-52 | -8.615850e-47 |
| Msa0363940 | Msa0432680 | 0.806602 | 7.597496e-50 | -8.615850e-47 |
| Msa0363940 | Msa0440130 | -0.824049 | 9.963303e-54 | -8.615850e-47 |
| Msa0363940 | Msa0467800 | 0.827907 | 1.207148e-54 | -8.615850e-47 |
| Msa0363940 | Msa0467880 | 0.824477 | 7.901486e-54 | -8.615850e-47 |
| Msa0363940 | Msa0472270 | 0.819638 | 1.045449e-52 | -8.615850e-47 |
| Msa0363940 | Msa0480150 | 0.800690 | 1.280719e-48 | -8.615850e-47 |
| Msa0363940 | Msa0482960 | 0.804843 | 1.777840e-49 | -8.615850e-47 |
| Msa0363940 | Msa0485280 | 0.815910 | 7.255622e-52 | -8.615850e-47 |
| Msa0363940 | Msa0486570 | 0.884770 | 1.443829e-71 | -8.615850e-47 |
| Msa0363940 | Msa0509540 | 0.804394 | 2.206533e-49 | -8.615850e-47 |
| Msa0363940 | Msa0514260 | 0.809623 | 1.726754e-50 | -8.615850e-47 |
| Msa0363940 | Msa0546740 | 0.842507 | 2.478596e-58 | -8.615850e-47 |
| Msa0363940 | Msa0591830 | -0.818247 | 2.165978e-52 | -8.615850e-47 |
| Msa0363940 | Msa0614230 | 0.801665 | 8.088486e-49 | -8.615850e-47 |
| Msa0363940 | Msa0642650 | 0.830911 | 2.249212e-55 | -8.615850e-47 |
| Msa0363940 | Msa0681890 | 0.820089 | 8.247629e-53 | -8.615850e-47 |
| Msa0363940 | Msa0703720 | 0.804105 | 2.533685e-49 | -8.615850e-47 |
| Msa0363940 | Msa0738880 | 0.855040 | 8.236663e-62 | -8.615850e-47 |
| Msa0363940 | Msa0738890 | 0.807546 | 4.794432e-50 | -8.615850e-47 |
| Msa0363940 | Msa0783280 | 0.800656 | 1.300788e-48 | -8.615850e-47 |
| Msa0363940 | Msa0794130 | 0.816394 | 5.657259e-52 | -8.615850e-47 |
| Msa0363940 | Msa0819320 | 0.844471 | 7.405717e-59 | -8.615850e-47 |
| Msa0363940 | Msa0819370 | 0.851684 | 7.559013e-61 | -8.615850e-47 |
| Msa0363940 | Msa0819380 | 0.815118 | 1.088948e-51 | -8.615850e-47 |
| Msa0363940 | Msa0859510 | 0.801793 | 7.614476e-49 | -8.615850e-47 |
| Msa0363940 | Msa0925160 | 0.813658 | 2.289269e-51 | -8.615850e-47 |
| Msa0363940 | Msa0955260 | 0.816425 | 5.566550e-52 | -8.615850e-47 |
| Msa0363940 | Msa0958020 | 0.818034 | 2.419197e-52 | -8.615850e-47 |
| Msa0363940 | Msa0992570 | 0.808437 | 3.098851e-50 | -8.615850e-47 |
| Msa0363940 | Msa0992590 | 0.817477 | 3.232341e-52 | -8.615850e-47 |
| Msa0363940 | Msa1002040 | 0.819689 | 1.018160e-52 | -8.615850e-47 |
| Msa0363940 | Msa1027790 | 0.805657 | 1.200950e-49 | -8.615850e-47 |
| Msa0363940 | Msa1030870 | 0.828081 | 1.096349e-54 | -8.615850e-47 |
| Msa0363940 | Msa1119860 | 0.807155 | 5.803900e-50 | -8.615850e-47 |
| Msa0363940 | Msa1157730 | 0.819328 | 1.230287e-52 | -8.615850e-47 |
| Msa0363940 | Msa1219250 | 0.801783 | 7.649571e-49 | -8.615850e-47 |
| Msa0363940 | Msa1223840 | 0.819434 | 1.163869e-52 | -8.615850e-47 |
| Msa0363940 | Msa1224670 | 0.804381 | 2.220170e-49 | -8.615850e-47 |
| Msa0363940 | Msa1381130 | 0.813828 | 2.100151e-51 | -8.615850e-47 |
| Msa0363940 | Msa1405770 | 0.814649 | 1.383322e-51 | -8.615850e-47 |
| Msa0363940 | Msa1411830 | 0.811689 | 6.175966e-51 | -8.615850e-47 |
| Msa0363940 | Msa1458330 | 0.802377 | 5.773838e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363940 | MtrunA17_Chr3g0102791 | 89.143 | 175 | 6 | 2 | 1 | 174 | 1 | 163 | 2.56e-83 | 243 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363940 | AT1G56200.1 | 61.719 | 128 | 42 | 3 | 48 | 173 | 32 | 154 | 5.62e-21 | 84.3 |
| Msa0363940 | AT1G56200.2 | 61.719 | 128 | 42 | 3 | 48 | 173 | 29 | 151 | 6.33e-21 | 84.3 |
| Msa0363940 | AT1G30475.3 | 68.182 | 88 | 26 | 1 | 79 | 164 | 73 | 160 | 3.65e-18 | 77.4 |
| Msa0363940 | AT1G30475.2 | 68.182 | 88 | 26 | 1 | 79 | 164 | 73 | 160 | 3.65e-18 | 77.4 |
| Msa0363940 | AT1G30475.1 | 68.182 | 88 | 26 | 1 | 79 | 164 | 102 | 189 | 4.26e-18 | 77.8 |
Find 96 sgRNAs with CRISPR-Local
Find 323 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATGATATGGTTGCGAAAT+TGG | 0.106467 | 3_1:+56587229 | None:intergenic |
| TCATTTACCTGGTGGTAATT+TGG | 0.111148 | 3_1:+56584991 | None:intergenic |
| TTACCAATAATGACAATATT+TGG | 0.205763 | 3_1:+56582786 | None:intergenic |
| GGTCGAATTATGGATGAATT+TGG | 0.218500 | 3_1:+56587251 | None:intergenic |
| TGCAAGGTCTCTGAAATTTC+GGG | 0.224213 | 3_1:-56587353 | Msa0363940:five_prime_UTR |
| TTGCAAGGTCTCTGAAATTT+CGG | 0.241226 | 3_1:-56587354 | Msa0363940:five_prime_UTR |
| CATTTACCTGGTGGTAATTT+GGG | 0.261244 | 3_1:+56584992 | None:intergenic |
| TGCGAAATTGGGTCGAATTA+TGG | 0.278971 | 3_1:+56587241 | None:intergenic |
| AAGACGAAGGTTACGGTTAC+AGG | 0.291277 | 3_1:-56583039 | Msa0363940:CDS |
| TCCTCTTCCAAACCATTGTT+AGG | 0.313054 | 3_1:-56587299 | Msa0363940:five_prime_UTR |
| GGAGGTGGAGGCAACTGGTC+TGG | 0.349107 | 3_1:-56583121 | Msa0363940:CDS |
| TATAATATGTGCTGCAGCTT+TGG | 0.349585 | 3_1:-56584009 | Msa0363940:intron |
| ATTTCAGAGACCTTGCAAAT+TGG | 0.356144 | 3_1:+56587359 | None:intergenic |
| TTGAAACCCTAACAATGGTT+TGG | 0.393778 | 3_1:+56587292 | None:intergenic |
| CCAACAATTACCCATCTTCC+AGG | 0.394142 | 3_1:-56583348 | Msa0363940:intron |
| TATGATATGGTTGCGAAATT+GGG | 0.410832 | 3_1:+56587230 | None:intergenic |
| CCTGGAAGATGGGTAATTGT+TGG | 0.418823 | 3_1:+56583348 | None:intergenic |
| GGATAGCTTCAGAAGCAGTT+TGG | 0.418939 | 3_1:+56587329 | None:intergenic |
| TAACCGGAGAAGGCGGTGAT+AGG | 0.419295 | 3_1:-56583014 | Msa0363940:exon |
| GCACCAATGGCACACAACTA+TGG | 0.420396 | 3_1:-56587399 | Msa0363940:five_prime_UTR |
| GAGGTGGAGGTGGAGGCAAC+TGG | 0.422662 | 3_1:-56583126 | Msa0363940:CDS |
| CATAGTACTGTAGAATATAT+TGG | 0.427784 | 3_1:-56582932 | Msa0363940:three_prime_UTR |
| TGATGTGTGTTGATGGGTGT+TGG | 0.434293 | 3_1:-56587465 | None:intergenic |
| TTGCCTATCACCGCCTTCTC+CGG | 0.444144 | 3_1:+56583011 | None:intergenic |
| TTAACAGTCCGTAGTCCTCT+TGG | 0.444264 | 3_1:+56584101 | None:intergenic |
| GTAGAATATATTGGTCTGAC+AGG | 0.451801 | 3_1:-56582923 | Msa0363940:three_prime_UTR |
| CAAATTGGCGGGTTCCACTT+TGG | 0.452288 | 3_1:+56587374 | None:intergenic |
| CCTCTTCCAAACCATTGTTA+GGG | 0.453171 | 3_1:-56587298 | Msa0363940:five_prime_UTR |
| GTGCCATAGTTGTGTGCCAT+TGG | 0.455065 | 3_1:+56587396 | None:intergenic |
| TTCCACCATCATCAATTTGT+GGG | 0.456713 | 3_1:+56583188 | None:intergenic |
| TTAACAGTCCGTAGTCCTCT+TGG | 0.463947 | 3_1:+56584137 | None:intergenic |
| GTCAACAATTACCTGGAAGA+TGG | 0.464114 | 3_1:+56583337 | None:intergenic |
| GATGTGTGTTGATGGGTGTT+GGG | 0.480043 | 3_1:-56587464 | None:intergenic |
| GTACCACGCGGAATCGTTGA+TGG | 0.480630 | 3_1:+56587174 | None:intergenic |
| CAAATTGATGATGGTGGAAG+TGG | 0.481050 | 3_1:-56583184 | Msa0363940:CDS |
| TTGTGTGCCATTGGTGCCAT+TGG | 0.481108 | 3_1:+56587405 | None:intergenic |
| GTTACGGTTACAGGGATAAC+CGG | 0.483400 | 3_1:-56583030 | Msa0363940:CDS |
| TCAGAGACCTTGCAAATTGG+CGG | 0.490706 | 3_1:+56587362 | None:intergenic |
| GAAAGTGAAGACGAAGGTTA+CGG | 0.496218 | 3_1:-56583046 | Msa0363940:CDS |
| CAGAGACCTTGCAAATTGGC+GGG | 0.500554 | 3_1:+56587363 | None:intergenic |
| GGTGGAGGCAACTGGTCTGG+TGG | 0.503674 | 3_1:-56583118 | Msa0363940:CDS |
| TATTCTACAGTACTATGATA+AGG | 0.514912 | 3_1:+56582938 | None:intergenic |
| ATGAGCCGAAAACTATGATA+TGG | 0.515263 | 3_1:+56587217 | None:intergenic |
| CTCGTGATGATGATGATGGC+GGG | 0.516182 | 3_1:-56583153 | Msa0363940:CDS |
| CCCTAACAATGGTTTGGAAG+AGG | 0.519784 | 3_1:+56587298 | None:intergenic |
| CTTCCACCATCATCAATTTG+TGG | 0.526409 | 3_1:+56583187 | None:intergenic |
| TCTCAAAATTTCTCCGTGGA+AGG | 0.526510 | 3_1:-56582835 | Msa0363940:three_prime_UTR |
| TTCCGCCTGCACACCAATGT+TGG | 0.528693 | 3_1:-56585038 | Msa0363940:exon |
| AGGGTTTCAAATTTCTCACT+CGG | 0.531778 | 3_1:-56587279 | Msa0363940:five_prime_UTR |
| AGTAGCCAACATTGGTGTGC+AGG | 0.534104 | 3_1:+56585033 | None:intergenic |
| TCAACAATTACCTGGAAGAT+GGG | 0.540469 | 3_1:+56583338 | None:intergenic |
| TTAAATTTCCAAGAGGACTA+CGG | 0.552642 | 3_1:-56584109 | Msa0363940:CDS |
| TTAAATTTCCAAGAGGACTA+CGG | 0.552642 | 3_1:-56584145 | Msa0363940:CDS |
| GATGGCACCAATGGCACCAA+TGG | 0.556479 | 3_1:-56587412 | Msa0363940:five_prime_UTR |
| GTGTGTGTGATGTGTGTGTG+TGG | 0.557434 | 3_1:-56587439 | Msa0363940:five_prime_UTR |
| ACACAGTTTCCACATGGTAG+AGG | 0.560771 | 3_1:-56584056 | Msa0363940:CDS |
| CGTGATGATGATGATGGCGG+GGG | 0.562407 | 3_1:-56583151 | Msa0363940:CDS |
| ATCGTTGATGGATTACGATA+CGG | 0.566139 | 3_1:+56587186 | None:intergenic |
| AAGGATGTGGTTCATGAGCA+TGG | 0.566386 | 3_1:+56582623 | None:intergenic |
| TAGAGGAACTCGTTCTACTC+AGG | 0.576586 | 3_1:-56584039 | Msa0363940:CDS |
| GAAATTTGAAACCCTAACAA+TGG | 0.577367 | 3_1:+56587287 | None:intergenic |
| AAGTCCCCACAAATTGATGA+TGG | 0.581883 | 3_1:-56583193 | Msa0363940:CDS |
| TGTGGTGGAGATGGCACCAA+TGG | 0.594763 | 3_1:-56587421 | Msa0363940:five_prime_UTR |
| GTGGAACCCGCCAATTTGCA+AGG | 0.599384 | 3_1:-56587369 | Msa0363940:five_prime_UTR |
| TCAGAAATGTGTGAAGGATG+TGG | 0.604745 | 3_1:+56582610 | None:intergenic |
| GGTTTGGAAGAGGAAGATGA+TGG | 0.604828 | 3_1:+56587308 | None:intergenic |
| TCCACCATCATCAATTTGTG+GGG | 0.604881 | 3_1:+56583189 | None:intergenic |
| AGCCAACATTGGTGTGCAGG+CGG | 0.609794 | 3_1:+56585036 | None:intergenic |
| TCCCCACAAATTGATGATGG+TGG | 0.613798 | 3_1:-56583190 | Msa0363940:CDS |
| AATACAGTTAAATTTCCAAG+AGG | 0.616988 | 3_1:-56584116 | Msa0363940:CDS |
| AGACGAAGGTTACGGTTACA+GGG | 0.621370 | 3_1:-56583038 | Msa0363940:CDS |
| TCTACAGTTAAATTTCCAAG+AGG | 0.623564 | 3_1:-56584152 | Msa0363940:CDS |
| CCGCCTCGTGATGATGATGA+TGG | 0.624527 | 3_1:-56583157 | Msa0363940:CDS |
| GCAAGGTCTCTGAAATTTCG+GGG | 0.627819 | 3_1:-56587352 | Msa0363940:five_prime_UTR |
| TCGTGATGATGATGATGGCG+GGG | 0.630213 | 3_1:-56583152 | Msa0363940:CDS |
| GGCCACTGTGTGGAAGAGAA+TGG | 0.636980 | 3_1:-56584179 | Msa0363940:CDS |
| AGGATGTGGTTCATGAGCAT+GGG | 0.642509 | 3_1:+56582624 | None:intergenic |
| TCTTTGCCCAAATTACCACC+AGG | 0.643884 | 3_1:-56584998 | Msa0363940:intron |
| GTGTGCACAGTGAGAAGAGG+TGG | 0.650924 | 3_1:-56584200 | Msa0363940:intron |
| TTTGTGTGCACAGTGAGAAG+AGG | 0.656598 | 3_1:-56584203 | Msa0363940:intron |
| CCTCGTGATGATGATGATGG+CGG | 0.657157 | 3_1:-56583154 | Msa0363940:CDS |
| GCAAATTCAGAAATGTGTGA+AGG | 0.657903 | 3_1:+56582604 | None:intergenic |
| ACTGCACTAGTAGCCAACAT+TGG | 0.665642 | 3_1:+56585025 | None:intergenic |
| CCGCCATCATCATCATCACG+AGG | 0.666501 | 3_1:+56583154 | None:intergenic |
| ACACAACTATGGCACCAAAG+TGG | 0.674172 | 3_1:-56587388 | Msa0363940:five_prime_UTR |
| TAGAATATATTGGTCTGACA+GGG | 0.678545 | 3_1:-56582922 | Msa0363940:three_prime_UTR |
| ACAGGGATAACCGGAGAAGG+CGG | 0.687017 | 3_1:-56583021 | Msa0363940:CDS |
| AAACTCTCAAAATTTCTCCG+TGG | 0.687039 | 3_1:-56582839 | Msa0363940:three_prime_UTR |
| GAGAAGAGGTGGCCACTGTG+TGG | 0.687254 | 3_1:-56584189 | Msa0363940:CDS |
| GTTACAGGGATAACCGGAGA+AGG | 0.698284 | 3_1:-56583024 | Msa0363940:CDS |
| GAACGAGTTCCTCTACCATG+TGG | 0.701280 | 3_1:+56584047 | None:intergenic |
| GACAAAGAAAGTGAAGACGA+AGG | 0.702140 | 3_1:-56583052 | Msa0363940:CDS |
| AGTTGTACACAGTTTCCACA+TGG | 0.705945 | 3_1:-56584062 | Msa0363940:CDS |
| CCATCATCATCATCACGAGG+CGG | 0.728539 | 3_1:+56583157 | None:intergenic |
| CACCATTCTCTTCCACACAG+TGG | 0.743076 | 3_1:+56584177 | None:intergenic |
| AATCCATCAACGATTCCGCG+TGG | 0.764571 | 3_1:-56587177 | Msa0363940:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAAATTTAATAAATGATT+TGG | - | chr3_1:56583264-56583283 | Msa0363940:intron | 10.0% |
| !!! | TCTTAATATAATTTTAGATT+AGG | - | chr3_1:56583873-56583892 | Msa0363940:intron | 10.0% |
| !! | TTATATATTAAAAAAAAGCA+CGG | + | chr3_1:56584314-56584333 | None:intergenic | 10.0% |
| !!! | ATTTTATCTTTTATCTTTTT+CGG | - | chr3_1:56584940-56584959 | Msa0363940:intron | 10.0% |
| !!! | TTAATTTTTTAATGCACTTT+TGG | - | chr3_1:56583189-56583208 | Msa0363940:CDS | 15.0% |
| !! | ATTATGATATTATCATATTC+TGG | - | chr3_1:56583821-56583840 | Msa0363940:intron | 15.0% |
| !!! | CAGTTTTTCTATTTTAAAAT+AGG | + | chr3_1:56584211-56584230 | None:intergenic | 15.0% |
| !! | TTATGATTACTGTATAAATT+GGG | - | chr3_1:56584608-56584627 | Msa0363940:intron | 15.0% |
| !!! | AATTGATAACAAATTCTAAA+AGG | + | chr3_1:56584895-56584914 | None:intergenic | 15.0% |
| !! | TAAATTGAGACATAATATTT+AGG | - | chr3_1:56585114-56585133 | Msa0363940:intron | 15.0% |
| !! | ATATACGGATATTAAAGAAA+TGG | + | chr3_1:56582919-56582938 | None:intergenic | 20.0% |
| !!! | TTTTTTGTAGTTTGTAGAAA+TGG | - | chr3_1:56583052-56583071 | Msa0363940:CDS | 20.0% |
| !!! | TTTTTGTAGTTTGTAGAAAT+GGG | - | chr3_1:56583053-56583072 | Msa0363940:CDS | 20.0% |
| !!! | TTTGCATAAGATTTTCATAT+GGG | - | chr3_1:56583084-56583103 | Msa0363940:CDS | 20.0% |
| !!! | GAAGTTTACATTTTTATTGA+AGG | - | chr3_1:56583217-56583236 | Msa0363940:intron | 20.0% |
| !!! | TTTTTATTGAAGGATTTTGT+TGG | - | chr3_1:56583227-56583246 | Msa0363940:intron | 20.0% |
| !!! | TTTTATTGAAGGATTTTGTT+GGG | - | chr3_1:56583228-56583247 | Msa0363940:intron | 20.0% |
| !! | ACATATAATAGAAATGTGAA+TGG | + | chr3_1:56583652-56583671 | None:intergenic | 20.0% |
| !! | AAACTAAAAGATTTGTGAAT+GGG | + | chr3_1:56583690-56583709 | None:intergenic | 20.0% |
| !! | AAAACTAAAAGATTTGTGAA+TGG | + | chr3_1:56583691-56583710 | None:intergenic | 20.0% |
| !!! | AAATCTTTTAGTTTTCTTTC+TGG | - | chr3_1:56583696-56583715 | Msa0363940:intron | 20.0% |
| !!! | AATCTTTTAGTTTTCTTTCT+GGG | - | chr3_1:56583697-56583716 | Msa0363940:intron | 20.0% |
| !! | TTGAATATTTATTGTGTTGA+TGG | - | chr3_1:56583796-56583815 | Msa0363940:intron | 20.0% |
| !! | ATATTAAGAAAAACTGTAGA+CGG | + | chr3_1:56583862-56583881 | None:intergenic | 20.0% |
| !!! | ATTTTAAAATAGGTCATGTT+TGG | + | chr3_1:56584201-56584220 | None:intergenic | 20.0% |
| !! | ATTGAAAGGATTACATATTA+CGG | + | chr3_1:56584264-56584283 | None:intergenic | 20.0% |
| !! | GTTATGATTACTGTATAAAT+TGG | - | chr3_1:56584607-56584626 | Msa0363940:intron | 20.0% |
| !! | TGCATTGAAAGTAAAATTTA+GGG | + | chr3_1:56584693-56584712 | None:intergenic | 20.0% |
| !! | TTGCATTGAAAGTAAAATTT+AGG | + | chr3_1:56584694-56584713 | None:intergenic | 20.0% |
| !!! | TCTTTTTACATCTTCTTTAT+TGG | - | chr3_1:56584781-56584800 | Msa0363940:intron | 20.0% |
| !! | AGATAAAATATCTAGTATGT+TGG | + | chr3_1:56584929-56584948 | None:intergenic | 20.0% |
| !!! | TATCTATAACGATTTTTTCA+AGG | + | chr3_1:56585223-56585242 | None:intergenic | 20.0% |
| !! | ATAACTTGAAATTTCACATA+TGG | - | chr3_1:56586313-56586332 | Msa0363940:intron | 20.0% |
| !! | TAGAAAAACATTAAACATTC+AGG | - | chr3_1:56586507-56586526 | Msa0363940:intron | 20.0% |
| !! | TTAGTAATACATGAAATGAA+GGG | + | chr3_1:56586778-56586797 | None:intergenic | 20.0% |
| !! | ATTAGTAATACATGAAATGA+AGG | + | chr3_1:56586779-56586798 | None:intergenic | 20.0% |
| !! | TTACCAATAATGACAATATT+TGG | + | chr3_1:56587270-56587289 | None:intergenic | 20.0% |
| !!! | GTTTTAATTGTTGAATTCAT+TGG | + | chr3_1:56587404-56587423 | None:intergenic | 20.0% |
| !!! | CAATCATTGAAGTTTTATGA+TGG | - | chr3_1:56583004-56583023 | Msa0363940:exon | 25.0% |
| ! | TGTTATGTATGTTGAAAGTT+TGG | - | chr3_1:56583028-56583047 | Msa0363940:CDS | 25.0% |
| !! | GTTTGCATAAGATTTTCATA+TGG | - | chr3_1:56583083-56583102 | Msa0363940:CDS | 25.0% |
| ! | TAATTCTAATCACATTCGTT+TGG | + | chr3_1:56583128-56583147 | None:intergenic | 25.0% |
| ! | AACTAAAAGATTTGTGAATG+GGG | + | chr3_1:56583689-56583708 | None:intergenic | 25.0% |
| ! | TTTAGTAAACATGACTATTG+TGG | - | chr3_1:56583748-56583767 | Msa0363940:intron | 25.0% |
| ! | TGATATTATCATATTCTGGT+TGG | - | chr3_1:56583825-56583844 | Msa0363940:intron | 25.0% |
| !! | GGGAAAAGAATAGAATTTTA+GGG | - | chr3_1:56584055-56584074 | Msa0363940:CDS | 25.0% |
| ! | TTACATATTACGGTGAATAT+AGG | + | chr3_1:56584254-56584273 | None:intergenic | 25.0% |
| ! | AGCATATCAAACATATTGAA+AGG | + | chr3_1:56584278-56584297 | None:intergenic | 25.0% |
| !!! | TATTTCACATAGTGGATTTT+CGG | - | chr3_1:56584389-56584408 | Msa0363940:intron | 25.0% |
| ! | GGATTTATTGGTAAACATTT+CGG | - | chr3_1:56584585-56584604 | Msa0363940:intron | 25.0% |
| ! | AAGTAATTAGTAATCTGTGT+TGG | - | chr3_1:56584645-56584664 | Msa0363940:intron | 25.0% |
| ! | GCATTGAAAGTAAAATTTAG+GGG | + | chr3_1:56584692-56584711 | None:intergenic | 25.0% |
| ! | AACAAACTAAAAGTTAAGAC+TGG | + | chr3_1:56584744-56584763 | None:intergenic | 25.0% |
| !!! | AGTCTTAACTTTTAGTTTGT+TGG | - | chr3_1:56584743-56584762 | Msa0363940:intron | 25.0% |
| !! | GATAACAAATTCTAAAAGGT+GGG | + | chr3_1:56584891-56584910 | None:intergenic | 25.0% |
| !! | TGATAACAAATTCTAAAAGG+TGG | + | chr3_1:56584892-56584911 | None:intergenic | 25.0% |
| !! | ATCCCTTTTATGCTTTATAT+AGG | - | chr3_1:56585277-56585296 | Msa0363940:intron | 25.0% |
| ! | TGCCTATATAAAGCATAAAA+GGG | + | chr3_1:56585282-56585301 | None:intergenic | 25.0% |
| ! | ATGCCTATATAAAGCATAAA+AGG | + | chr3_1:56585283-56585302 | None:intergenic | 25.0% |
| !! | TCATAACTGAACACTTTTAT+TGG | + | chr3_1:56585322-56585341 | None:intergenic | 25.0% |
| ! | TTAAATTCACGCACAATTTA+AGG | - | chr3_1:56585592-56585611 | Msa0363940:intron | 25.0% |
| !! | TTTTTATAACCCATACAACT+AGG | + | chr3_1:56585657-56585676 | None:intergenic | 25.0% |
| !! | AGTTGTATGGGTTATAAAAA+TGG | - | chr3_1:56585657-56585676 | Msa0363940:intron | 25.0% |
| ! | AATACAGTTAAATTTCCAAG+AGG | - | chr3_1:56585937-56585956 | Msa0363940:intron | 25.0% |
| !! | AAAATTGCAATCTAGAGTAA+AGG | + | chr3_1:56586123-56586142 | None:intergenic | 25.0% |
| ! | AACTCATAGACTATAAGAAT+TGG | + | chr3_1:56586148-56586167 | None:intergenic | 25.0% |
| !! | GTTGTCTAACCATAAAATTT+TGG | - | chr3_1:56586229-56586248 | Msa0363940:intron | 25.0% |
| !!! | AGCTGTTTTCCAAAATTTTA+TGG | + | chr3_1:56586241-56586260 | None:intergenic | 25.0% |
| !!! | TTATGTCATTTTTGGAACAT+TGG | - | chr3_1:56586285-56586304 | Msa0363940:intron | 25.0% |
| ! | GAAATTTCACATATGGTTTA+TGG | - | chr3_1:56586320-56586339 | Msa0363940:intron | 25.0% |
| ! | AATGTATGAAATTTATAGCC+TGG | + | chr3_1:56586367-56586386 | None:intergenic | 25.0% |
| ! | ACAAAAGATACCAAAAAACA+AGG | + | chr3_1:56586427-56586446 | None:intergenic | 25.0% |
| ! | TATTCTACAGTACTATGATA+AGG | + | chr3_1:56587118-56587137 | None:intergenic | 25.0% |
| ! | CATAGTACTGTAGAATATAT+TGG | - | chr3_1:56587121-56587140 | Msa0363940:intron | 25.0% |
| !!! | AGAAATTTTGAGAGTTTAGT+TGG | + | chr3_1:56587211-56587230 | None:intergenic | 25.0% |
| ! | GTACCAAATATTGTCATTAT+TGG | - | chr3_1:56587264-56587283 | Msa0363940:five_prime_UTR | 25.0% |
| ! | TTGTCATTATTGGTAAGATT+TGG | - | chr3_1:56587274-56587293 | Msa0363940:five_prime_UTR | 25.0% |
| ! | GTTCAAACTGAAAAATAGAT+CGG | + | chr3_1:56587360-56587379 | None:intergenic | 25.0% |
| !!! | CTATTTTTCAGTTTGAACAT+AGG | - | chr3_1:56587362-56587381 | Msa0363940:five_prime_UTR | 25.0% |
| ! | GAAATTTGAAACCCTAACAA+TGG | + | chr3_1:56582769-56582788 | None:intergenic | 30.0% |
| TATGATATGGTTGCGAAATT+GGG | + | chr3_1:56582826-56582845 | None:intergenic | 30.0% | |
| TTGAACAACACAACAACAAA+GGG | + | chr3_1:56582981-56583000 | None:intergenic | 30.0% | |
| ATTGAACAACACAACAACAA+AGG | + | chr3_1:56582982-56583001 | None:intergenic | 30.0% | |
| CCAAGTTTAGTTATGGAAAA+TGG | + | chr3_1:56583358-56583377 | None:intergenic | 30.0% | |
| ! | CCATTTTCCATAACTAAACT+TGG | - | chr3_1:56583355-56583374 | Msa0363940:CDS | 30.0% |
| TGTATGACCAAGTTTAGTTA+TGG | + | chr3_1:56583365-56583384 | None:intergenic | 30.0% | |
| ! | ACTAATTAAAAGCCGAGTTT+TGG | + | chr3_1:56583542-56583561 | None:intergenic | 30.0% |
| ! | AGCAAAGTATCTTATCTAGA+AGG | + | chr3_1:56583578-56583597 | None:intergenic | 30.0% |
| TTATCAGTGTTGTCAAATAG+CGG | - | chr3_1:56583911-56583930 | Msa0363940:intron | 30.0% | |
| ATTGTCCTACTAGAAAAACT+CGG | + | chr3_1:56583989-56584008 | None:intergenic | 30.0% | |
| ! | CGGGAAAAGAATAGAATTTT+AGG | - | chr3_1:56584054-56584073 | Msa0363940:CDS | 30.0% |
| TAGCGGAAAAAAGAGAATTT+AGG | - | chr3_1:56584123-56584142 | Msa0363940:CDS | 30.0% | |
| AGCGGAAAAAAGAGAATTTA+GGG | - | chr3_1:56584124-56584143 | Msa0363940:CDS | 30.0% | |
| ! | AATTAGTAATCTGTGTTGGT+CGG | - | chr3_1:56584649-56584668 | Msa0363940:intron | 30.0% |
| TAGGTATGACAATCATCAAT+CGG | - | chr3_1:56584820-56584839 | Msa0363940:intron | 30.0% | |
| ATATCTAGTATGTTGGAACT+AGG | + | chr3_1:56584922-56584941 | None:intergenic | 30.0% | |
| AGAAATTATCATTTACCTGG+TGG | + | chr3_1:56585073-56585092 | None:intergenic | 30.0% | |
| GTCAGAAATTATCATTTACC+TGG | + | chr3_1:56585076-56585095 | None:intergenic | 30.0% | |
| AGGCATAAGAAATATGAGTT+CGG | - | chr3_1:56585134-56585153 | Msa0363940:intron | 30.0% | |
| AGATGGAAAATAAAAGTGAC+GGG | + | chr3_1:56585174-56585193 | None:intergenic | 30.0% | |
| CAGATGGAAAATAAAAGTGA+CGG | + | chr3_1:56585175-56585194 | None:intergenic | 30.0% | |
| ! | ATATTACCAGAAGTACAGAT+TGG | - | chr3_1:56585344-56585363 | Msa0363940:intron | 30.0% |
| ! | TATTACCAGAAGTACAGATT+GGG | - | chr3_1:56585345-56585364 | Msa0363940:intron | 30.0% |
| ATTGATTGCTATCTTATCCA+AGG | - | chr3_1:56585419-56585438 | Msa0363940:intron | 30.0% | |
| TTTAACACAAATGTGCACAA+TGG | + | chr3_1:56585577-56585596 | None:intergenic | 30.0% | |
| CAAAAACACAAAGATGCATA+TGG | + | chr3_1:56585627-56585646 | None:intergenic | 30.0% | |
| ! | TTGTGTTTTTCCTAGTTGTA+TGG | - | chr3_1:56585644-56585663 | Msa0363940:intron | 30.0% |
| ! | TGTGTTTTTCCTAGTTGTAT+GGG | - | chr3_1:56585645-56585664 | Msa0363940:intron | 30.0% |
| TCTACAGTTAAATTTCCAAG+AGG | - | chr3_1:56585901-56585920 | Msa0363940:intron | 30.0% | |
| TTAAATTTCCAAGAGGACTA+CGG | - | chr3_1:56585908-56585927 | Msa0363940:intron | 30.0% | |
| TTAAATTTCCAAGAGGACTA+CGG | - | chr3_1:56585908-56585927 | Msa0363940:intron | 30.0% | |
| TAGACAACATAATTCTTCAC+AGG | + | chr3_1:56586217-56586236 | None:intergenic | 30.0% | |
| !!! | GTGGTCATTTATGTCATTTT+TGG | - | chr3_1:56586277-56586296 | Msa0363940:intron | 30.0% |
| !!! | GATTTGATGTCCTTGTTTTT+TGG | - | chr3_1:56586414-56586433 | Msa0363940:intron | 30.0% |
| TATTCTACCCAAGCATATAA+GGG | + | chr3_1:56586486-56586505 | None:intergenic | 30.0% | |
| !! | ACATTCAGGAGTTTTGATAT+TGG | - | chr3_1:56586521-56586540 | Msa0363940:intron | 30.0% |
| ATTACTAATGAATCCATCCA+AGG | - | chr3_1:56586790-56586809 | Msa0363940:intron | 30.0% | |
| ! | TTGAATTCAACTTTCAGGTA+AGG | - | chr3_1:56586835-56586854 | Msa0363940:intron | 30.0% |
| !!! | TCTGGTGGATTTTTCTTTTT+TGG | - | chr3_1:56586950-56586969 | Msa0363940:intron | 30.0% |
| !! | TTTGGATTTCTTGCTTTTCT+TGG | - | chr3_1:56586968-56586987 | Msa0363940:intron | 30.0% |
| ! | TAGAATATATTGGTCTGACA+GGG | - | chr3_1:56587131-56587150 | Msa0363940:intron | 30.0% |
| !! | ATATAAGCTTTTTCCTTCCA+CGG | + | chr3_1:56587234-56587253 | None:intergenic | 30.0% |
| ! | TTATTGGTAAGATTTGGTAG+TGG | - | chr3_1:56587280-56587299 | Msa0363940:five_prime_UTR | 30.0% |
| ATTTCAGAGACCTTGCAAAT+TGG | + | chr3_1:56582697-56582716 | None:intergenic | 35.0% | |
| !! | TTGCAAGGTCTCTGAAATTT+CGG | - | chr3_1:56582699-56582718 | Msa0363940:intron | 35.0% |
| TTGAAACCCTAACAATGGTT+TGG | + | chr3_1:56582764-56582783 | None:intergenic | 35.0% | |
| AGGGTTTCAAATTTCTCACT+CGG | - | chr3_1:56582774-56582793 | Msa0363940:intron | 35.0% | |
| GGTCGAATTATGGATGAATT+TGG | + | chr3_1:56582805-56582824 | None:intergenic | 35.0% | |
| CTATGATATGGTTGCGAAAT+TGG | + | chr3_1:56582827-56582846 | None:intergenic | 35.0% | |
| ! | CGCAACCATATCATAGTTTT+CGG | - | chr3_1:56582831-56582850 | Msa0363940:three_prime_UTR | 35.0% |
| ATGAGCCGAAAACTATGATA+TGG | + | chr3_1:56582839-56582858 | None:intergenic | 35.0% | |
| !! | ATCGTTGATGGATTACGATA+CGG | + | chr3_1:56582870-56582889 | None:intergenic | 35.0% |
| ! | TGTAGTTTGTAGAAATGGGT+TGG | - | chr3_1:56583057-56583076 | Msa0363940:CDS | 35.0% |
| TGCTAGAGAGTTTAGAAGAT+TGG | - | chr3_1:56583163-56583182 | Msa0363940:CDS | 35.0% | |
| ! | GGTCATACATGTGAGTTTTT+AGG | - | chr3_1:56583376-56583395 | Msa0363940:CDS | 35.0% |
| AGTGATCTAGTCTAGTTGAT+AGG | - | chr3_1:56583402-56583421 | Msa0363940:intron | 35.0% | |
| ! | GGTTTGCTTAATTATGTACG+TGG | - | chr3_1:56583769-56583788 | Msa0363940:intron | 35.0% |
| ! | TCATATTCTGGTTGGAATGT+TGG | - | chr3_1:56583833-56583852 | Msa0363940:intron | 35.0% |
| TTACATCTGCTAGCAGAAAT+TGG | + | chr3_1:56584025-56584044 | None:intergenic | 35.0% | |
| ATTTCTGCTAGCAGATGTAA+CGG | - | chr3_1:56584025-56584044 | Msa0363940:CDS | 35.0% | |
| ! | AAAAAAAGCACGGAGAATAG+AGG | + | chr3_1:56584304-56584323 | None:intergenic | 35.0% |
| TGAAATAGCAGGTAATGTTG+CGG | + | chr3_1:56584376-56584395 | None:intergenic | 35.0% | |
| !! | TTACCTGCTATTTCACATAG+TGG | - | chr3_1:56584381-56584400 | Msa0363940:intron | 35.0% |
| AATCCACTATGTGAAATAGC+AGG | + | chr3_1:56584387-56584406 | None:intergenic | 35.0% | |
| TTTAGTCTAATGAAGCTCCA+TGG | - | chr3_1:56584456-56584475 | Msa0363940:intron | 35.0% | |
| TTAGTCTAATGAAGCTCCAT+GGG | - | chr3_1:56584457-56584476 | Msa0363940:intron | 35.0% | |
| TAAATCCAGTCGACAAAACA+AGG | + | chr3_1:56584572-56584591 | None:intergenic | 35.0% | |
| !! | GTTTTGTCGACTGGATTTAT+TGG | - | chr3_1:56584573-56584592 | Msa0363940:intron | 35.0% |
| TTACTAATTACTTGCGCACA+GGG | + | chr3_1:56584638-56584657 | None:intergenic | 35.0% | |
| ATTACTAATTACTTGCGCAC+AGG | + | chr3_1:56584639-56584658 | None:intergenic | 35.0% | |
| TGGAAGTCTGTTGTAGAAAT+AGG | - | chr3_1:56584801-56584820 | Msa0363940:intron | 35.0% | |
| AGGTATGACAATCATCAATC+GGG | - | chr3_1:56584821-56584840 | Msa0363940:intron | 35.0% | |
| CATTTACCTGGTGGTAATTT+GGG | + | chr3_1:56585064-56585083 | None:intergenic | 35.0% | |
| TCATTTACCTGGTGGTAATT+TGG | + | chr3_1:56585065-56585084 | None:intergenic | 35.0% | |
| GATGGAAAATAAAAGTGACG+GGG | + | chr3_1:56585173-56585192 | None:intergenic | 35.0% | |
| ATGTGTAAAACAGGATACAG+CGG | + | chr3_1:56585253-56585272 | None:intergenic | 35.0% | |
| GGGATATCTATGTGTAAAAC+AGG | + | chr3_1:56585262-56585281 | None:intergenic | 35.0% | |
| AGAACACACATCAAATTCAC+TGG | + | chr3_1:56585399-56585418 | None:intergenic | 35.0% | |
| CAAACACATGCATTAATCCT+TGG | + | chr3_1:56585439-56585458 | None:intergenic | 35.0% | |
| CAAGGATTAATGCATGTGTT+TGG | - | chr3_1:56585437-56585456 | Msa0363940:intron | 35.0% | |
| ! | AATGTGTCAATTAAAAGCGC+AGG | + | chr3_1:56585466-56585485 | None:intergenic | 35.0% |
| AGTTGACTGGATACTATTTG+AGG | - | chr3_1:56585525-56585544 | Msa0363940:intron | 35.0% | |
| ! | GATACTATTTGAGGTGAATG+AGG | - | chr3_1:56585534-56585553 | Msa0363940:intron | 35.0% |
| GAATTGATGGAATGGAATCA+AGG | + | chr3_1:56585694-56585713 | None:intergenic | 35.0% | |
| TTTAGCAGGAATTGATGGAA+TGG | + | chr3_1:56585702-56585721 | None:intergenic | 35.0% | |
| ATTCCATCAATTCCTGCTAA+AGG | - | chr3_1:56585701-56585720 | Msa0363940:intron | 35.0% | |
| AGAAAACCAAATGTGTCAGA+TGG | + | chr3_1:56585759-56585778 | None:intergenic | 35.0% | |
| TATAATATGTGCTGCAGCTT+TGG | - | chr3_1:56586044-56586063 | Msa0363940:intron | 35.0% | |
| CAACATAATTCTTCACAGGT+CGG | + | chr3_1:56586213-56586232 | None:intergenic | 35.0% | |
| ACAGCTTCATTACTCATTAG+AGG | - | chr3_1:56586255-56586274 | Msa0363940:intron | 35.0% | |
| ! | AGAAGAGGACTTTTAAGCTT+AGG | + | chr3_1:56586457-56586476 | None:intergenic | 35.0% |
| GTATTCTACCCAAGCATATA+AGG | + | chr3_1:56586487-56586506 | None:intergenic | 35.0% | |
| TTGCATTCTGCATATATCAG+AGG | + | chr3_1:56586644-56586663 | None:intergenic | 35.0% | |
| TCAACAATTACCTGGAAGAT+GGG | + | chr3_1:56586718-56586737 | None:intergenic | 35.0% | |
| TCATTCAGTCAACAATTACC+TGG | + | chr3_1:56586726-56586745 | None:intergenic | 35.0% | |
| CTGAAAGTTGAATTCAACCA+TGG | + | chr3_1:56586832-56586851 | None:intergenic | 35.0% | |
| CATGGTTGAATTCAACTTTC+AGG | - | chr3_1:56586830-56586849 | Msa0363940:intron | 35.0% | |
| TTCCACCATCATCAATTTGT+GGG | + | chr3_1:56586868-56586887 | None:intergenic | 35.0% | |
| ! | GTAGAATATATTGGTCTGAC+AGG | - | chr3_1:56587130-56587149 | Msa0363940:intron | 35.0% |
| AAACTCTCAAAATTTCTCCG+TGG | - | chr3_1:56587214-56587233 | Msa0363940:five_prime_UTR | 35.0% | |
| !! | AAGATTTGGTAGTGGAATTG+TGG | - | chr3_1:56587288-56587307 | Msa0363940:five_prime_UTR | 35.0% |
| TGGAATTGTGGTGATATTTG+TGG | - | chr3_1:56587300-56587319 | Msa0363940:five_prime_UTR | 35.0% | |
| GCAAATTCAGAAATGTGTGA+AGG | + | chr3_1:56587452-56587471 | None:intergenic | 35.0% | |
| !! | TGCAAGGTCTCTGAAATTTC+GGG | - | chr3_1:56582700-56582719 | Msa0363940:intron | 40.0% |
| TCCTCTTCCAAACCATTGTT+AGG | - | chr3_1:56582754-56582773 | Msa0363940:intron | 40.0% | |
| CCTCTTCCAAACCATTGTTA+GGG | - | chr3_1:56582755-56582774 | Msa0363940:intron | 40.0% | |
| TGCGAAATTGGGTCGAATTA+TGG | + | chr3_1:56582815-56582834 | None:intergenic | 40.0% | |
| AAAATATGTAGCGTACCACG+CGG | + | chr3_1:56582894-56582913 | None:intergenic | 40.0% | |
| !! | AGTTTGTAGAAATGGGTTGG+TGG | - | chr3_1:56583060-56583079 | Msa0363940:CDS | 40.0% |
| !! | GTTTGTAGAAATGGGTTGGT+GGG | - | chr3_1:56583061-56583080 | Msa0363940:CDS | 40.0% |
| ! | GCTTTAAACGCCTACGTAAA+AGG | - | chr3_1:56583444-56583463 | Msa0363940:intron | 40.0% |
| AAACGCCTACGTAAAAGGTT+AGG | - | chr3_1:56583449-56583468 | Msa0363940:intron | 40.0% | |
| AACGCCTACGTAAAAGGTTA+GGG | - | chr3_1:56583450-56583469 | Msa0363940:intron | 40.0% | |
| CTGCTGTTGAAACCAAAACT+CGG | - | chr3_1:56583527-56583546 | Msa0363940:intron | 40.0% | |
| ! | TAGCGTTGTGGTTTTCATAG+TGG | + | chr3_1:56583965-56583984 | None:intergenic | 40.0% |
| !! | GCTATCCGAGTTTTTCTAGT+AGG | - | chr3_1:56583981-56584000 | Msa0363940:intron | 40.0% |
| GCTAGCAGAAATTGGAATAG+CGG | + | chr3_1:56584017-56584036 | None:intergenic | 40.0% | |
| GACTTATTTCAACCGCTATG+CGG | - | chr3_1:56584336-56584355 | Msa0363940:intron | 40.0% | |
| AAATAGAAGAAGCCGCATAG+CGG | + | chr3_1:56584351-56584370 | None:intergenic | 40.0% | |
| CAAGTACGTGTTATCACTAG+CGG | + | chr3_1:56584436-56584455 | None:intergenic | 40.0% | |
| TAGTCTAATGAAGCTCCATG+GGG | - | chr3_1:56584458-56584477 | Msa0363940:intron | 40.0% | |
| TACTAATTACTTGCGCACAG+GGG | + | chr3_1:56584637-56584656 | None:intergenic | 40.0% | |
| ATGACAATCATCAATCGGGT+TGG | - | chr3_1:56584825-56584844 | Msa0363940:intron | 40.0% | |
| TGACAATCATCAATCGGGTT+GGG | - | chr3_1:56584826-56584845 | Msa0363940:intron | 40.0% | |
| !! | GTATGTCACTTCAAGTTGAC+TGG | - | chr3_1:56585512-56585531 | Msa0363940:intron | 40.0% |
| ! | ATTTGAGGTGAATGAGGTGA+AGG | - | chr3_1:56585540-56585559 | Msa0363940:intron | 40.0% |
| ! | GTATAGCAGGACAAGGATTT+TGG | + | chr3_1:56585737-56585756 | None:intergenic | 40.0% |
| AATGTGTCAGATGGTATAGC+AGG | + | chr3_1:56585750-56585769 | None:intergenic | 40.0% | |
| GCTATACCATCTGACACATT+TGG | - | chr3_1:56585750-56585769 | Msa0363940:intron | 40.0% | |
| AGTTGTACACAGTTTCCACA+TGG | - | chr3_1:56585991-56586010 | Msa0363940:intron | 40.0% | |
| GCTTCATTACTCATTAGAGG+TGG | - | chr3_1:56586258-56586277 | Msa0363940:intron | 40.0% | |
| GGTTTATGGATTCTGACCTT+TGG | - | chr3_1:56586334-56586353 | Msa0363940:intron | 40.0% | |
| GCTTAAAAGTCCTCTTCTTG+TGG | - | chr3_1:56586459-56586478 | Msa0363940:intron | 40.0% | |
| ATATAAGGGACCACAAGAAG+AGG | + | chr3_1:56586472-56586491 | None:intergenic | 40.0% | |
| TTGTGGTCCCTTATATGCTT+GGG | - | chr3_1:56586476-56586495 | Msa0363940:intron | 40.0% | |
| GTCAACAATTACCTGGAAGA+TGG | + | chr3_1:56586719-56586738 | None:intergenic | 40.0% | |
| AAGTCCCCACAAATTGATGA+TGG | - | chr3_1:56586860-56586879 | Msa0363940:intron | 40.0% | |
| TCCACCATCATCAATTTGTG+GGG | + | chr3_1:56586867-56586886 | None:intergenic | 40.0% | |
| CTTCCACCATCATCAATTTG+TGG | + | chr3_1:56586869-56586888 | None:intergenic | 40.0% | |
| !! | CAAATTGATGATGGTGGAAG+TGG | - | chr3_1:56586869-56586888 | Msa0363940:intron | 40.0% |
| GACAAAGAAAGTGAAGACGA+AGG | - | chr3_1:56587001-56587020 | Msa0363940:intron | 40.0% | |
| GAAAGTGAAGACGAAGGTTA+CGG | - | chr3_1:56587007-56587026 | Msa0363940:intron | 40.0% | |
| TCTCAAAATTTCTCCGTGGA+AGG | - | chr3_1:56587218-56587237 | Msa0363940:five_prime_UTR | 40.0% | |
| TCAGAAATGTGTGAAGGATG+TGG | + | chr3_1:56587446-56587465 | None:intergenic | 40.0% | |
| ACACAACTATGGCACCAAAG+TGG | - | chr3_1:56582665-56582684 | Msa0363940:three_prime_UTR | 45.0% | |
| TCAGAGACCTTGCAAATTGG+CGG | + | chr3_1:56582694-56582713 | None:intergenic | 45.0% | |
| !! | GCAAGGTCTCTGAAATTTCG+GGG | - | chr3_1:56582701-56582720 | Msa0363940:intron | 45.0% |
| GGATAGCTTCAGAAGCAGTT+TGG | + | chr3_1:56582727-56582746 | None:intergenic | 45.0% | |
| GGTTTGGAAGAGGAAGATGA+TGG | + | chr3_1:56582748-56582767 | None:intergenic | 45.0% | |
| ! | CCCTAACAATGGTTTGGAAG+AGG | + | chr3_1:56582758-56582777 | None:intergenic | 45.0% |
| ! | CATGCCCTAACCTTTTACGT+AGG | + | chr3_1:56583457-56583476 | None:intergenic | 45.0% |
| TGCCAAAAACAACACCTTGC+CGG | - | chr3_1:56583486-56583505 | Msa0363940:intron | 45.0% | |
| AAATACCAATAGAGCCGGCA+AGG | + | chr3_1:56583503-56583522 | None:intergenic | 45.0% | |
| GCCAGAAATACCAATAGAGC+CGG | + | chr3_1:56583508-56583527 | None:intergenic | 45.0% | |
| GAAAAACTCGGATAGCGTTG+TGG | + | chr3_1:56583977-56583996 | None:intergenic | 45.0% | |
| AGCAGATGTAACGGCAATAG+CGG | - | chr3_1:56584034-56584053 | Msa0363940:CDS | 45.0% | |
| GCTAGCATACGAAACTCTTC+AGG | + | chr3_1:56584098-56584117 | None:intergenic | 45.0% | |
| TCGTATGCTAGCAGCAATAG+CGG | - | chr3_1:56584106-56584125 | Msa0363940:CDS | 45.0% | |
| AGTCTAATGAAGCTCCATGG+GGG | - | chr3_1:56584459-56584478 | Msa0363940:intron | 45.0% | |
| ATTCTCCAATACTTCCCCCA+TGG | + | chr3_1:56584476-56584495 | None:intergenic | 45.0% | |
| !!! | TGTCTCCTTGTTTTGTCGAC+TGG | - | chr3_1:56584564-56584583 | Msa0363940:intron | 45.0% |
| ! | TAGTAATCTGTGTTGGTCGG+TGG | - | chr3_1:56584652-56584671 | Msa0363940:intron | 45.0% |
| ! | GACAATCATCAATCGGGTTG+GGG | - | chr3_1:56584827-56584846 | Msa0363940:intron | 45.0% |
| !! | ACAATCATCAATCGGGTTGG+GGG | - | chr3_1:56584828-56584847 | Msa0363940:intron | 45.0% |
| ACTGCACTAGTAGCCAACAT+TGG | + | chr3_1:56585031-56585050 | None:intergenic | 45.0% | |
| TCTTTGCCCAAATTACCACC+AGG | - | chr3_1:56585055-56585074 | Msa0363940:intron | 45.0% | |
| GATTGCCCAATCTGTACTTC+TGG | + | chr3_1:56585353-56585372 | None:intergenic | 45.0% | |
| CATCAAATTCACTGGCAGGA+AGG | + | chr3_1:56585391-56585410 | None:intergenic | 45.0% | |
| CACACATCAAATTCACTGGC+AGG | + | chr3_1:56585395-56585414 | None:intergenic | 45.0% | |
| CTGCCTTTAGCAGGAATTGA+TGG | + | chr3_1:56585707-56585726 | None:intergenic | 45.0% | |
| GGATCAATACTGCCTTTAGC+AGG | + | chr3_1:56585716-56585735 | None:intergenic | 45.0% | |
| TCAGATGGTATAGCAGGACA+AGG | + | chr3_1:56585744-56585763 | None:intergenic | 45.0% | |
| TTTGTGTGCACAGTGAGAAG+AGG | - | chr3_1:56585850-56585869 | Msa0363940:intron | 45.0% | |
| TTAACAGTCCGTAGTCCTCT+TGG | + | chr3_1:56585919-56585938 | None:intergenic | 45.0% | |
| TTAACAGTCCGTAGTCCTCT+TGG | + | chr3_1:56585919-56585938 | None:intergenic | 45.0% | |
| ACACAGTTTCCACATGGTAG+AGG | - | chr3_1:56585997-56586016 | Msa0363940:intron | 45.0% | |
| TAGAGGAACTCGTTCTACTC+AGG | - | chr3_1:56586014-56586033 | Msa0363940:intron | 45.0% | |
| ! | ATAGCCTGGAAGTATGCCAA+AGG | + | chr3_1:56586353-56586372 | None:intergenic | 45.0% |
| CTTGTGGTCCCTTATATGCT+TGG | - | chr3_1:56586475-56586494 | Msa0363940:intron | 45.0% | |
| CCTGGAAGATGGGTAATTGT+TGG | + | chr3_1:56586708-56586727 | None:intergenic | 45.0% | |
| CCAACAATTACCCATCTTCC+AGG | - | chr3_1:56586705-56586724 | Msa0363940:intron | 45.0% | |
| TCCATCCAAGGATGCTCTAA+TGG | - | chr3_1:56586802-56586821 | Msa0363940:intron | 45.0% | |
| !! | TCCCCACAAATTGATGATGG+TGG | - | chr3_1:56586863-56586882 | Msa0363940:intron | 45.0% |
| AAGACGAAGGTTACGGTTAC+AGG | - | chr3_1:56587014-56587033 | Msa0363940:intron | 45.0% | |
| AGACGAAGGTTACGGTTACA+GGG | - | chr3_1:56587015-56587034 | Msa0363940:intron | 45.0% | |
| GTTACGGTTACAGGGATAAC+CGG | - | chr3_1:56587023-56587042 | Msa0363940:intron | 45.0% | |
| AGGATGTGGTTCATGAGCAT+GGG | + | chr3_1:56587432-56587451 | None:intergenic | 45.0% | |
| AAGGATGTGGTTCATGAGCA+TGG | + | chr3_1:56587433-56587452 | None:intergenic | 45.0% | |
| !!! | AAAAATTGAATTTTTATATA+CGG | + | chr3_1:56582934-56582953 | None:intergenic | 5.0% |
| GTGTGTGTGATGTGTGTGTG+TGG | - | chr3_1:56582614-56582633 | Msa0363940:three_prime_UTR | 50.0% | |
| TGTGTGATGTGTGTGTGTGG+TGG | - | chr3_1:56582617-56582636 | Msa0363940:three_prime_UTR | 50.0% | |
| ! | ATGTGTGTGTGTGGTGGAGA+TGG | - | chr3_1:56582623-56582642 | Msa0363940:three_prime_UTR | 50.0% |
| !! | TTGTGTGCCATTGGTGCCAT+TGG | + | chr3_1:56582651-56582670 | None:intergenic | 50.0% |
| GCACCAATGGCACACAACTA+TGG | - | chr3_1:56582654-56582673 | Msa0363940:three_prime_UTR | 50.0% | |
| GTGCCATAGTTGTGTGCCAT+TGG | + | chr3_1:56582660-56582679 | None:intergenic | 50.0% | |
| !! | CAAATTGGCGGGTTCCACTT+TGG | + | chr3_1:56582682-56582701 | None:intergenic | 50.0% |
| CAGAGACCTTGCAAATTGGC+GGG | + | chr3_1:56582693-56582712 | None:intergenic | 50.0% | |
| AATCCATCAACGATTCCGCG+TGG | - | chr3_1:56582876-56582895 | Msa0363940:three_prime_UTR | 50.0% | |
| !!! | AGCCGGCAAGGTGTTGTTTT+TGG | + | chr3_1:56583491-56583510 | None:intergenic | 50.0% |
| ! | GCCGGCTCTATTGGTATTTC+TGG | - | chr3_1:56583504-56583523 | Msa0363940:intron | 50.0% |
| GCAGATGTAACGGCAATAGC+GGG | - | chr3_1:56584035-56584054 | Msa0363940:CDS | 50.0% | |
| !! | CACTAGCGGACTGCGTAAAA+CGG | + | chr3_1:56584422-56584441 | None:intergenic | 50.0% |
| ! | AAGCTCCATGGGGGAAGTAT+TGG | - | chr3_1:56584468-56584487 | Msa0363940:intron | 50.0% |
| AGTAGCCAACATTGGTGTGC+AGG | + | chr3_1:56585023-56585042 | None:intergenic | 50.0% | |
| TGCACGTATCTCGTAGCAGA+TGG | + | chr3_1:56585191-56585210 | None:intergenic | 50.0% | |
| CACCATTCTCTTCCACACAG+TGG | + | chr3_1:56585879-56585898 | None:intergenic | 50.0% | |
| GAACGAGTTCCTCTACCATG+TGG | + | chr3_1:56586009-56586028 | None:intergenic | 50.0% | |
| CTGACCTTTGGCATACTTCC+AGG | - | chr3_1:56586346-56586365 | Msa0363940:intron | 50.0% | |
| ! | GCCATTAGAGCATCCTTGGA+TGG | + | chr3_1:56586806-56586825 | None:intergenic | 50.0% |
| ! | GCAAGCCATTAGAGCATCCT+TGG | + | chr3_1:56586810-56586829 | None:intergenic | 50.0% |
| ! | GATGCTCTAATGGCTTGCCA+TGG | - | chr3_1:56586812-56586831 | Msa0363940:intron | 50.0% |
| CCATCATCATCATCACGAGG+CGG | + | chr3_1:56586899-56586918 | None:intergenic | 50.0% | |
| !! | CCTCGTGATGATGATGATGG+CGG | - | chr3_1:56586899-56586918 | Msa0363940:intron | 50.0% |
| !! | CTCGTGATGATGATGATGGC+GGG | - | chr3_1:56586900-56586919 | Msa0363940:intron | 50.0% |
| !! | TCGTGATGATGATGATGGCG+GGG | - | chr3_1:56586901-56586920 | Msa0363940:intron | 50.0% |
| GTTACAGGGATAACCGGAGA+AGG | - | chr3_1:56587029-56587048 | Msa0363940:intron | 50.0% | |
| ! | TGTGGTGGAGATGGCACCAA+TGG | - | chr3_1:56582632-56582651 | Msa0363940:three_prime_UTR | 55.0% |
| GATGGCACCAATGGCACCAA+TGG | - | chr3_1:56582641-56582660 | Msa0363940:three_prime_UTR | 55.0% | |
| GTGGAACCCGCCAATTTGCA+AGG | - | chr3_1:56582684-56582703 | Msa0363940:intron | 55.0% | |
| GTACCACGCGGAATCGTTGA+TGG | + | chr3_1:56582882-56582901 | None:intergenic | 55.0% | |
| !! | CAACACCTTGCCGGCTCTAT+TGG | - | chr3_1:56583495-56583514 | Msa0363940:intron | 55.0% |
| !! | TAGCGGACTGCGTAAAACGG+TGG | + | chr3_1:56584419-56584438 | None:intergenic | 55.0% |
| TTGGTGTGCAGGCGGAAAAC+TGG | + | chr3_1:56585012-56585031 | None:intergenic | 55.0% | |
| TTCCGCCTGCACACCAATGT+TGG | - | chr3_1:56585015-56585034 | Msa0363940:CDS | 55.0% | |
| AGCCAACATTGGTGTGCAGG+CGG | + | chr3_1:56585020-56585039 | None:intergenic | 55.0% | |
| GTGTGCACAGTGAGAAGAGG+TGG | - | chr3_1:56585853-56585872 | Msa0363940:intron | 55.0% | |
| GGCCACTGTGTGGAAGAGAA+TGG | - | chr3_1:56585874-56585893 | Msa0363940:intron | 55.0% | |
| ! | CCGCCTCGTGATGATGATGA+TGG | - | chr3_1:56586896-56586915 | Msa0363940:intron | 55.0% |
| CCGCCATCATCATCATCACG+AGG | + | chr3_1:56586902-56586921 | None:intergenic | 55.0% | |
| !! | CGTGATGATGATGATGGCGG+GGG | - | chr3_1:56586902-56586921 | Msa0363940:intron | 55.0% |
| ACAGGGATAACCGGAGAAGG+CGG | - | chr3_1:56587032-56587051 | Msa0363940:intron | 55.0% | |
| TAACCGGAGAAGGCGGTGAT+AGG | - | chr3_1:56587039-56587058 | Msa0363940:intron | 55.0% | |
| TTGCCTATCACCGCCTTCTC+CGG | + | chr3_1:56587045-56587064 | None:intergenic | 55.0% | |
| GAGAAGAGGTGGCCACTGTG+TGG | - | chr3_1:56585864-56585883 | Msa0363940:intron | 60.0% | |
| !! | GATGATGATGATGGCGGGGG+AGG | - | chr3_1:56586905-56586924 | Msa0363940:intron | 60.0% |
| !! | GATGATGATGGCGGGGGAGG+AGG | - | chr3_1:56586908-56586927 | Msa0363940:intron | 65.0% |
| GAGGTGGAGGTGGAGGCAAC+TGG | - | chr3_1:56586927-56586946 | Msa0363940:intron | 65.0% | |
| GGAGGTGGAGGCAACTGGTC+TGG | - | chr3_1:56586932-56586951 | Msa0363940:intron | 65.0% | |
| ! | GGTGGAGGCAACTGGTCTGG+TGG | - | chr3_1:56586935-56586954 | Msa0363940:intron | 65.0% |
| !! | GATGATGGCGGGGGAGGAGG+TGG | - | chr3_1:56586911-56586930 | Msa0363940:intron | 70.0% |
| !! | GATGGCGGGGGAGGAGGTGG+AGG | - | chr3_1:56586914-56586933 | Msa0363940:intron | 75.0% |
| GGGGGAGGAGGTGGAGGTGG+AGG | - | chr3_1:56586920-56586939 | Msa0363940:intron | 75.0% | |
| ! | GGCGGGGGAGGAGGTGGAGG+TGG | - | chr3_1:56586917-56586936 | Msa0363940:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 56582603 | 56587472 | 56582603 | ID=Msa0363940;Name=Msa0363940 |
| chr3_1 | mRNA | 56582603 | 56587472 | 56582603 | ID=Msa0363940-mRNA-1;Parent=Msa0363940;Name=Msa0363940-mRNA-1;_AED=0.04;_eAED=0.04;_QI=313|1|1|1|0.6|0.33|6|307|174 |
| chr3_1 | exon | 56582603 | 56582691 | 56582603 | ID=Msa0363940-mRNA-1:exon:10510;Parent=Msa0363940-mRNA-1 |
| chr3_1 | exon | 56582800 | 56583223 | 56582800 | ID=Msa0363940-mRNA-1:exon:10509;Parent=Msa0363940-mRNA-1 |
| chr3_1 | exon | 56583349 | 56583418 | 56583349 | ID=Msa0363940-mRNA-1:exon:10508;Parent=Msa0363940-mRNA-1 |
| chr3_1 | exon | 56584010 | 56584212 | 56584010 | ID=Msa0363940-mRNA-1:exon:10507;Parent=Msa0363940-mRNA-1 |
| chr3_1 | exon | 56584999 | 56585062 | 56584999 | ID=Msa0363940-mRNA-1:exon:10506;Parent=Msa0363940-mRNA-1 |
| chr3_1 | exon | 56587178 | 56587472 | 56587178 | ID=Msa0363940-mRNA-1:exon:10505;Parent=Msa0363940-mRNA-1 |
| chr3_1 | five_prime_UTR | 56587178 | 56587472 | 56587178 | ID=Msa0363940-mRNA-1:five_prime_utr;Parent=Msa0363940-mRNA-1 |
| chr3_1 | five_prime_UTR | 56585045 | 56585062 | 56585045 | ID=Msa0363940-mRNA-1:five_prime_utr;Parent=Msa0363940-mRNA-1 |
| chr3_1 | CDS | 56584999 | 56585044 | 56584999 | ID=Msa0363940-mRNA-1:cds;Parent=Msa0363940-mRNA-1 |
| chr3_1 | CDS | 56584010 | 56584212 | 56584010 | ID=Msa0363940-mRNA-1:cds;Parent=Msa0363940-mRNA-1 |
| chr3_1 | CDS | 56583349 | 56583418 | 56583349 | ID=Msa0363940-mRNA-1:cds;Parent=Msa0363940-mRNA-1 |
| chr3_1 | CDS | 56583018 | 56583223 | 56583018 | ID=Msa0363940-mRNA-1:cds;Parent=Msa0363940-mRNA-1 |
| chr3_1 | three_prime_UTR | 56582800 | 56583017 | 56582800 | ID=Msa0363940-mRNA-1:three_prime_utr;Parent=Msa0363940-mRNA-1 |
| chr3_1 | three_prime_UTR | 56582603 | 56582691 | 56582603 | ID=Msa0363940-mRNA-1:three_prime_utr;Parent=Msa0363940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
