AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0738870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0738870 MtrunA17_Chr5g0438471 71.179 229 46 3 1 209 1 229 1.19e-14 70.1
Msa0738870 MtrunA17_Chr5g0438481 78.652 89 4 2 135 209 122 209 1.81e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 116 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTTCCACCGATGCTAAAA+AGG 0.195603 5_1:-56936319 Msa0738870:CDS
GTAACTACCACCACCATATT+TGG 0.210470 5_1:+56935465 None:intergenic
ATGGCTGTAGCCTCCATATT+TGG 0.280339 5_1:+56935831 None:intergenic
TTGAACAATGGGTTCGAAAA+AGG 0.298712 5_1:-56936412 Msa0738870:exon
AAATTTCATAGAAATTTAAA+AGG 0.316144 5_1:+56934993 None:intergenic
GAAGTAAATGATGCCAAATA+TGG 0.357966 5_1:-56935844 Msa0738870:intron
TTTAAAAGGAGAGGTAATAA+TGG 0.392845 5_1:+56935007 None:intergenic
GAAATGAATGATGCCAAATA+TGG 0.415776 5_1:-56935478 Msa0738870:CDS
TTGAACAGATATTGAACAAT+GGG 0.416474 5_1:-56936423 Msa0738870:exon
GGTGGAGGTCACGGTGGTCA+TGG 0.425233 5_1:-56935544 Msa0738870:CDS
CATGCTAACCCTCTTGGCTA+TGG 0.456984 5_1:-56936382 Msa0738870:CDS
GGAGGTGGTCACGGTGGTCA+CGG 0.459917 5_1:-56935328 Msa0738870:CDS
TATCTATCTATACTATATAG+TGG 0.463085 5_1:+56935133 None:intergenic
CACGGTGGACACGGTGGAGG+TGG 0.465334 5_1:-56935343 Msa0738870:CDS
GGTGGTTACAAAGGTGGAGG+TGG 0.467659 5_1:-56935679 Msa0738870:intron
CACGGTGGTCACGGTGGAGG+TGG 0.469212 5_1:-56935577 Msa0738870:CDS
GGAGGTGGTTACAATGGTGG+TGG 0.479043 5_1:-56935604 Msa0738870:CDS
AATTCTCATGCTAACCCTCT+TGG 0.483525 5_1:-56936388 Msa0738870:CDS
GGACACGGTGGTCACGGTGG+AGG 0.486069 5_1:-56935580 Msa0738870:CDS
GGTGGTTACCACAATGGTGG+TGG 0.494689 5_1:-56935700 Msa0738870:CDS
GGTGGAGGACACGGTGGTCA+CGG 0.494972 5_1:-56935586 Msa0738870:CDS
GGTGGTTACAATGGTGGTGG+AGG 0.504299 5_1:-56935559 Msa0738870:CDS
TACAATGGTGGTGGAGGTCA+CGG 0.506705 5_1:-56935553 Msa0738870:CDS
GGTCACGGTGGACACGGTGG+AGG 0.507552 5_1:-56935346 Msa0738870:CDS
GGTGGATACAATGGTGGAGG+TGG 0.521371 5_1:-56935640 Msa0738870:CDS
GGTGGTTACAACCACGGTGG+AGG 0.531004 5_1:-56935721 Msa0738870:CDS
GGAGGTGGTCACGGTGGACA+CGG 0.533640 5_1:-56935352 Msa0738870:CDS
GGTGGTTACAATGGTGGTGG+AGG 0.535349 5_1:-56935601 Msa0738870:CDS
TCATAGAAATTTAAAAGGAG+AGG 0.536272 5_1:+56934998 None:intergenic
GGAGGTTACAACCATGGTGG+AGG 0.537302 5_1:-56935757 Msa0738870:CDS
AGTTATCACCACGGTGGAGG+TGG 0.545081 5_1:-56935388 Msa0738870:CDS
GGTTACCACAATGGTGGTGG+TGG 0.547395 5_1:-56935697 Msa0738870:intron
GGTTACCACAACGGTGGCGG+TGG 0.547786 5_1:-56935658 Msa0738870:CDS
GGACACGGTGGAGGTGGTCA+CGG 0.548236 5_1:-56935337 Msa0738870:CDS
TTTCATCAGTGATGTCCGCT+AGG 0.548466 5_1:-56936353 Msa0738870:CDS
GGTGGTTACCACAACGGTGG+CGG 0.548738 5_1:-56935661 Msa0738870:CDS
GGTTACAACCATGGTGGAGG+TGG 0.550910 5_1:-56935619 Msa0738870:CDS
GGCGGTGGATACAATGGTGG+AGG 0.551699 5_1:-56935643 Msa0738870:CDS
GGTTACAACCACGGTGGAGG+TGG 0.554746 5_1:-56935718 Msa0738870:CDS
TACAATGGTGGTGGAGGACA+CGG 0.556001 5_1:-56935595 Msa0738870:CDS
GGTGGTTACAACCATGGTGG+AGG 0.556342 5_1:-56935622 Msa0738870:CDS
GGAGGTGGTTACAATGGTGG+TGG 0.559565 5_1:-56935562 Msa0738870:CDS
TTCATCAGTGATGTCCGCTA+GGG 0.560051 5_1:-56936352 Msa0738870:CDS
GGTTACAACCACGGTGGAGG+TGG 0.560417 5_1:-56935367 Msa0738870:CDS
GGTTACAACCATGGTGGAGG+TGG 0.562689 5_1:-56935754 Msa0738870:CDS
GGAGGTGGTTACAACGGTGG+TGG 0.562839 5_1:-56935739 Msa0738870:CDS
CACGGTGGAGGTGGTTACAA+TGG 0.563087 5_1:-56935568 Msa0738870:CDS
GGTAGTTATCACCACGGTGG+AGG 0.564481 5_1:-56935391 Msa0738870:CDS
AATAAGAGCCATAGCCAAGA+GGG 0.568016 5_1:+56936374 None:intergenic
GGTGGTTACAACCACGGTGG+AGG 0.568751 5_1:-56935370 Msa0738870:CDS
AACGGTGGCGGTGGATACAA+TGG 0.572921 5_1:-56935649 Msa0738870:CDS
TGTATCCACCGCCACCGTTG+TGG 0.577751 5_1:+56935653 None:intergenic
AACCACGGTGGAGGTGGTCA+CGG 0.578947 5_1:-56935361 Msa0738870:CDS
GGTGGTTATAACCACGGTGG+TGG 0.581184 5_1:-56935808 Msa0738870:CDS
AAATTTATACATGATTTCCA+CGG 0.595177 5_1:+56935104 None:intergenic
TTTGAACAGATATTGAACAA+TGG 0.595987 5_1:-56936424 Msa0738870:exon
CATGGTGGAGGTGGTTACAA+TGG 0.597788 5_1:-56935610 Msa0738870:CDS
AACCACGGTGGTGGTTACAA+TGG 0.598930 5_1:-56935799 Msa0738870:CDS
ATAGATAGATATTTCATCCG+TGG 0.608522 5_1:-56935121 Msa0738870:three_prime_UTR
AAATATGGAGGCTACAGCCA+TGG 0.608534 5_1:-56935829 Msa0738870:CDS
CACGGTGGTGGTTACAATGG+TGG 0.608752 5_1:-56935796 Msa0738870:CDS
GGTAGTTACAACCACGGAGG+AGG 0.611011 5_1:-56935412 Msa0738870:CDS
GGTGGAGGTGGTTACAATGG+TGG 0.613370 5_1:-56935607 Msa0738870:CDS
GGAGGTTATAACCACGGCGG+AGG 0.614492 5_1:-56935775 Msa0738870:CDS
GGAGGTCACGGTGGTCATGG+TGG 0.615179 5_1:-56935541 Msa0738870:CDS
TATTACTGAGAAAGAGTGCA+TGG 0.619731 5_1:+56935250 None:intergenic
AACGGTGGTGGTTACAACCA+CGG 0.623888 5_1:-56935727 Msa0738870:CDS
GGTGGTGGTTACAATGGTGG+AGG 0.625782 5_1:-56935793 Msa0738870:CDS
GTAAATGATGCCAAATATGG+AGG 0.627438 5_1:-56935841 Msa0738870:CDS
TGTAACCACCACCACCATTG+TGG 0.629987 5_1:+56935692 None:intergenic
CGTTGTAACCACCTCCACCA+TGG 0.637472 5_1:+56935746 None:intergenic
AATGATGCCAAATATGGTGG+TGG 0.637670 5_1:-56935472 Msa0738870:intron
GTCTGTTGCCGTGCAAACTG+AGG 0.643641 5_1:-56935512 Msa0738870:CDS
CATGGTGGAGGTGGTTACAA+CGG 0.645837 5_1:-56935745 Msa0738870:CDS
CATTGTAACCACCTCCACCA+TGG 0.649002 5_1:+56935611 None:intergenic
GGTGGAGGTGGTTACCACAA+TGG 0.652457 5_1:-56935706 Msa0738870:CDS
GGTGGTCACGGTGGACACGG+TGG 0.653298 5_1:-56935349 Msa0738870:CDS
GGAGGACACGGTGGTCACGG+TGG 0.653298 5_1:-56935583 Msa0738870:CDS
CACGGTGGAGGTGGTCACGG+TGG 0.654877 5_1:-56935334 Msa0738870:CDS
CACGGTGGAGGTGGTCACGG+TGG 0.660681 5_1:-56935358 Msa0738870:CDS
CACCGTGGTTATAACCACCA+TGG 0.667967 5_1:+56935812 None:intergenic
TATGGAGGCTACAGCCATGG+TGG 0.674682 5_1:-56935826 Msa0738870:CDS
CACGGCGGAGGTTACAACCA+TGG 0.675031 5_1:-56935763 Msa0738870:CDS
GGTGGAGGTGGTTACAACCA+TGG 0.679817 5_1:-56935628 Msa0738870:CDS
GGTGGAGGTGGTTACAATGG+TGG 0.682012 5_1:-56935565 Msa0738870:CDS
GGTGGAGGTGGTTACCACAA+CGG 0.682366 5_1:-56935667 Msa0738870:CDS
GGTGGAGGTGGTTACAACCA+CGG 0.683488 5_1:-56935376 Msa0738870:CDS
CATGGTTGTAACCTCCGCCG+TGG 0.684031 5_1:+56935764 None:intergenic
CACCGTGACCACCTCCACCG+TGG 0.688584 5_1:+56935359 None:intergenic
ATGAATGATGCCAAATATGG+TGG 0.691119 5_1:-56935475 Msa0738870:CDS
AGCCATGGTGGTTATAACCA+CGG 0.691157 5_1:-56935814 Msa0738870:CDS
AAATAAGAGCCATAGCCAAG+AGG 0.693468 5_1:+56936373 None:intergenic
TCACGGTGCCGACCAAACTG+AGG 0.694971 5_1:-56935311 Msa0738870:CDS
GGAGGTGGTTACCACAATGG+TGG 0.699554 5_1:-56935703 Msa0738870:CDS
GGCGGAGGTTACAACCATGG+TGG 0.701232 5_1:-56935760 Msa0738870:CDS
GGTGATAACTACCTCCTCCG+TGG 0.701736 5_1:+56935401 None:intergenic
AATGGTGGAGGTTATAACCA+CGG 0.707895 5_1:-56935781 Msa0738870:CDS
GGTGGAGGTGGTTACAACGG+TGG 0.713237 5_1:-56935742 Msa0738870:CDS
AATGGTGGTGGAGGTCACGG+TGG 0.715780 5_1:-56935550 Msa0738870:CDS
GGTGGCGGTGGATACAATGG+TGG 0.717019 5_1:-56935646 Msa0738870:CDS
GGTTGTAACCACCTCCACCG+TGG 0.717584 5_1:+56935380 None:intergenic
TGTGGTAACCACCTCCACCG+TGG 0.717584 5_1:+56935710 None:intergenic
AGTTTCAGTTAAGTCCCTAG+CGG 0.722649 5_1:+56936338 None:intergenic
AATGGTGGTGGAGGACACGG+TGG 0.730218 5_1:-56935592 Msa0738870:CDS
GGTGGAGGTAGTTACAACCA+CGG 0.730738 5_1:-56935418 Msa0738870:intron
GGAGGTGGTTACCACAACGG+TGG 0.738100 5_1:-56935664 Msa0738870:CDS
CACCATTGTAACCACCACCG+TGG 0.740555 5_1:+56935797 None:intergenic
GGAGGTGGTTACAACCATGG+TGG 0.740649 5_1:-56935625 Msa0738870:CDS
GGAGGTAGTTATCACCACGG+TGG 0.769330 5_1:-56935394 Msa0738870:CDS
GGAGGAGGTAGTTATCACCA+CGG 0.770033 5_1:-56935397 Msa0738870:CDS
GATGTGCAGCAGTTTCAGTG+TGG 0.776308 5_1:-56935172 Msa0738870:three_prime_UTR
CATGGTGGTTATAACCACGG+TGG 0.785326 5_1:-56935811 Msa0738870:CDS
GGTGGTGGTTACAACCACGG+TGG 0.791258 5_1:-56935724 Msa0738870:CDS
GGAGGTGGTTACAACCACGG+TGG 0.797028 5_1:-56935373 Msa0738870:CDS
GGTGGAGGTTATAACCACGG+CGG 0.801472 5_1:-56935778 Msa0738870:CDS
GGAGGTAGTTACAACCACGG+AGG 0.812225 5_1:-56935415 Msa0738870:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTCATAGAAATTTAAA+AGG + chr5_1:56936421-56936440 None:intergenic 10.0%
!! AAATTTCATAGAAATTTAAA+AGG + chr5_1:56936421-56936440 None:intergenic 10.0%
!!! TCATTTTTTATATAACATTG+AGG + chr5_1:56935261-56935280 None:intergenic 15.0%
!!! AATGCTATGAATTTTTTTAT+CGG + chr5_1:56936445-56936464 None:intergenic 15.0%
!!! TCATTTTTTATATAACATTG+AGG + chr5_1:56935261-56935280 None:intergenic 15.0%
!!! AATGCTATGAATTTTTTTAT+CGG + chr5_1:56936445-56936464 None:intergenic 15.0%
!!! ATTATTTCCTACTTTTTTGA+AGG - chr5_1:56935178-56935197 Msa0738870:three_prime_UTR 20.0%
!! ATATAATCCTTCAAAAAAGT+AGG + chr5_1:56935188-56935207 None:intergenic 20.0%
!!! GTGTGTTGATATAAAAAAAA+AGG - chr5_1:56936208-56936227 Msa0738870:intron 20.0%
!! TATCTATCTATACTATATAG+TGG + chr5_1:56936281-56936300 None:intergenic 20.0%
!! AAATTTATACATGATTTCCA+CGG + chr5_1:56936310-56936329 None:intergenic 20.0%
!!! ATTATTTCCTACTTTTTTGA+AGG - chr5_1:56935178-56935197 Msa0738870:three_prime_UTR 20.0%
!! ATATAATCCTTCAAAAAAGT+AGG + chr5_1:56935188-56935207 None:intergenic 20.0%
!!! GTGTGTTGATATAAAAAAAA+AGG - chr5_1:56936208-56936227 Msa0738870:intron 20.0%
!! TATCTATCTATACTATATAG+TGG + chr5_1:56936281-56936300 None:intergenic 20.0%
!! AAATTTATACATGATTTCCA+CGG + chr5_1:56936310-56936329 None:intergenic 20.0%
! TTTGAACAGATATTGAACAA+TGG - chr5_1:56934987-56935006 Msa0738870:three_prime_UTR 25.0%
! TTGAACAGATATTGAACAAT+GGG - chr5_1:56934988-56935007 Msa0738870:three_prime_UTR 25.0%
! CATATATATTGTGTTTGTAG+AGG - chr5_1:56935527-56935546 Msa0738870:CDS 25.0%
!!! TAACACACTCATCATTTTTT+TGG + chr5_1:56936370-56936389 None:intergenic 25.0%
! TTTAAAAGGAGAGGTAATAA+TGG + chr5_1:56936407-56936426 None:intergenic 25.0%
! TCATAGAAATTTAAAAGGAG+AGG + chr5_1:56936416-56936435 None:intergenic 25.0%
! TTTGAACAGATATTGAACAA+TGG - chr5_1:56934987-56935006 Msa0738870:three_prime_UTR 25.0%
! TTGAACAGATATTGAACAAT+GGG - chr5_1:56934988-56935007 Msa0738870:three_prime_UTR 25.0%
! CATATATATTGTGTTTGTAG+AGG - chr5_1:56935527-56935546 Msa0738870:CDS 25.0%
!!! TAACACACTCATCATTTTTT+TGG + chr5_1:56936370-56936389 None:intergenic 25.0%
! TTTAAAAGGAGAGGTAATAA+TGG + chr5_1:56936407-56936426 None:intergenic 25.0%
! TCATAGAAATTTAAAAGGAG+AGG + chr5_1:56936416-56936435 None:intergenic 25.0%
TTCATTAAGAAGTTGTTGAG+TGG - chr5_1:56935358-56935377 Msa0738870:CDS 30.0%
! AAATTTTCCCAACATTACAC+AGG - chr5_1:56935387-56935406 Msa0738870:CDS 30.0%
AATCATACCTGTGTAATGTT+GGG + chr5_1:56935397-56935416 None:intergenic 30.0%
AAATCATACCTGTGTAATGT+TGG + chr5_1:56935398-56935417 None:intergenic 30.0%
ATATATAGGGTCATGTTAAC+TGG + chr5_1:56935472-56935491 None:intergenic 30.0%
GAAGTAAATGATGCCAAATA+TGG - chr5_1:56935567-56935586 Msa0738870:CDS 30.0%
GAAATGAATGATGCCAAATA+TGG - chr5_1:56935933-56935952 Msa0738870:intron 30.0%
ATAGATAGATATTTCATCCG+TGG - chr5_1:56936290-56936309 Msa0738870:intron 30.0%
TTCATTAAGAAGTTGTTGAG+TGG - chr5_1:56935358-56935377 Msa0738870:CDS 30.0%
! AAATTTTCCCAACATTACAC+AGG - chr5_1:56935387-56935406 Msa0738870:CDS 30.0%
AATCATACCTGTGTAATGTT+GGG + chr5_1:56935397-56935416 None:intergenic 30.0%
AAATCATACCTGTGTAATGT+TGG + chr5_1:56935398-56935417 None:intergenic 30.0%
ATATATAGGGTCATGTTAAC+TGG + chr5_1:56935472-56935491 None:intergenic 30.0%
GAAGTAAATGATGCCAAATA+TGG - chr5_1:56935567-56935586 Msa0738870:CDS 30.0%
GAAATGAATGATGCCAAATA+TGG - chr5_1:56935933-56935952 Msa0738870:intron 30.0%
ATAGATAGATATTTCATCCG+TGG - chr5_1:56936290-56936309 Msa0738870:intron 30.0%
! TTGAACAATGGGTTCGAAAA+AGG - chr5_1:56934999-56935018 Msa0738870:three_prime_UTR 35.0%
GTAAATGATGCCAAATATGG+AGG - chr5_1:56935570-56935589 Msa0738870:CDS 35.0%
ATGAATGATGCCAAATATGG+TGG - chr5_1:56935936-56935955 Msa0738870:intron 35.0%
!! TTTGAGTTTTGTCCTCAGTT+TGG + chr5_1:56936115-56936134 None:intergenic 35.0%
! TATTACTGAGAAAGAGTGCA+TGG + chr5_1:56936164-56936183 None:intergenic 35.0%
! TTGAACAATGGGTTCGAAAA+AGG - chr5_1:56934999-56935018 Msa0738870:three_prime_UTR 35.0%
GTAAATGATGCCAAATATGG+AGG - chr5_1:56935570-56935589 Msa0738870:CDS 35.0%
ATGAATGATGCCAAATATGG+TGG - chr5_1:56935936-56935955 Msa0738870:intron 35.0%
!! TTTGAGTTTTGTCCTCAGTT+TGG + chr5_1:56936115-56936134 None:intergenic 35.0%
! TATTACTGAGAAAGAGTGCA+TGG + chr5_1:56936164-56936183 None:intergenic 35.0%
AATTCTCATGCTAACCCTCT+TGG - chr5_1:56935023-56935042 Msa0738870:three_prime_UTR 40.0%
AATAAGAGCCATAGCCAAGA+GGG + chr5_1:56935040-56935059 None:intergenic 40.0%
AAATAAGAGCCATAGCCAAG+AGG + chr5_1:56935041-56935060 None:intergenic 40.0%
AGTTTCAGTTAAGTCCCTAG+CGG + chr5_1:56935076-56935095 None:intergenic 40.0%
AACTTCCACCGATGCTAAAA+AGG - chr5_1:56935092-56935111 Msa0738870:three_prime_UTR 40.0%
ACTTCCACCGATGCTAAAAA+GGG - chr5_1:56935093-56935112 Msa0738870:three_prime_UTR 40.0%
!! TAGCTCACCCTTTTTAGCAT+CGG + chr5_1:56935103-56935122 None:intergenic 40.0%
! AATGGTGGAGGTTATAACCA+CGG - chr5_1:56935630-56935649 Msa0738870:CDS 40.0%
! AGTCTTTTCCTCAGTTTGCA+CGG + chr5_1:56935910-56935929 None:intergenic 40.0%
AATGATGCCAAATATGGTGG+TGG - chr5_1:56935939-56935958 Msa0738870:intron 40.0%
GTAACTACCACCACCATATT+TGG + chr5_1:56935949-56935968 None:intergenic 40.0%
!! AGTTTTGTCCTCAGTTTGGT+CGG + chr5_1:56936111-56936130 None:intergenic 40.0%
AATTCTCATGCTAACCCTCT+TGG - chr5_1:56935023-56935042 Msa0738870:three_prime_UTR 40.0%
AATAAGAGCCATAGCCAAGA+GGG + chr5_1:56935040-56935059 None:intergenic 40.0%
AAATAAGAGCCATAGCCAAG+AGG + chr5_1:56935041-56935060 None:intergenic 40.0%
AGTTTCAGTTAAGTCCCTAG+CGG + chr5_1:56935076-56935095 None:intergenic 40.0%
AACTTCCACCGATGCTAAAA+AGG - chr5_1:56935092-56935111 Msa0738870:three_prime_UTR 40.0%
ACTTCCACCGATGCTAAAAA+GGG - chr5_1:56935093-56935112 Msa0738870:three_prime_UTR 40.0%
!! TAGCTCACCCTTTTTAGCAT+CGG + chr5_1:56935103-56935122 None:intergenic 40.0%
! AATGGTGGAGGTTATAACCA+CGG - chr5_1:56935630-56935649 Msa0738870:CDS 40.0%
! AGTCTTTTCCTCAGTTTGCA+CGG + chr5_1:56935910-56935929 None:intergenic 40.0%
AATGATGCCAAATATGGTGG+TGG - chr5_1:56935939-56935958 Msa0738870:intron 40.0%
GTAACTACCACCACCATATT+TGG + chr5_1:56935949-56935968 None:intergenic 40.0%
!! AGTTTTGTCCTCAGTTTGGT+CGG + chr5_1:56936111-56936130 None:intergenic 40.0%
TTTCATCAGTGATGTCCGCT+AGG - chr5_1:56935058-56935077 Msa0738870:three_prime_UTR 45.0%
TTCATCAGTGATGTCCGCTA+GGG - chr5_1:56935059-56935078 Msa0738870:three_prime_UTR 45.0%
GACTTCTTAACCAGTGTCCT+AGG - chr5_1:56935442-56935461 Msa0738870:intron 45.0%
TCATGTTAACTGGTGCTCCT+AGG + chr5_1:56935462-56935481 None:intergenic 45.0%
ATGGCTGTAGCCTCCATATT+TGG + chr5_1:56935583-56935602 None:intergenic 45.0%
AAATATGGAGGCTACAGCCA+TGG - chr5_1:56935582-56935601 Msa0738870:CDS 45.0%
AGCCATGGTGGTTATAACCA+CGG - chr5_1:56935597-56935616 Msa0738870:CDS 45.0%
!! AATGGTGGTGGTGGTTACAA+AGG - chr5_1:56935723-56935742 Msa0738870:CDS 45.0%
CATGGTTGTAACTTCCTCCA+TGG + chr5_1:56935974-56935993 None:intergenic 45.0%
CATGGAGGAAGTTACAACCA+TGG - chr5_1:56935972-56935991 Msa0738870:intron 45.0%
TTTCATCAGTGATGTCCGCT+AGG - chr5_1:56935058-56935077 Msa0738870:three_prime_UTR 45.0%
TTCATCAGTGATGTCCGCTA+GGG - chr5_1:56935059-56935078 Msa0738870:three_prime_UTR 45.0%
GACTTCTTAACCAGTGTCCT+AGG - chr5_1:56935442-56935461 Msa0738870:intron 45.0%
TCATGTTAACTGGTGCTCCT+AGG + chr5_1:56935462-56935481 None:intergenic 45.0%
ATGGCTGTAGCCTCCATATT+TGG + chr5_1:56935583-56935602 None:intergenic 45.0%
AAATATGGAGGCTACAGCCA+TGG - chr5_1:56935582-56935601 Msa0738870:CDS 45.0%
AGCCATGGTGGTTATAACCA+CGG - chr5_1:56935597-56935616 Msa0738870:CDS 45.0%
!! AATGGTGGTGGTGGTTACAA+AGG - chr5_1:56935723-56935742 Msa0738870:CDS 45.0%
CATGGTTGTAACTTCCTCCA+TGG + chr5_1:56935974-56935993 None:intergenic 45.0%
CATGGAGGAAGTTACAACCA+TGG - chr5_1:56935972-56935991 Msa0738870:intron 45.0%
!! TAAATATATATCTATATATA+GGG + chr5_1:56935485-56935504 None:intergenic 5.0%
!! TTAAATATATATCTATATAT+AGG + chr5_1:56935486-56935505 None:intergenic 5.0%
!! ATATAGATATATATTTAAAA+AGG - chr5_1:56935488-56935507 Msa0738870:CDS 5.0%
!! TAAATATATATCTATATATA+GGG + chr5_1:56935485-56935504 None:intergenic 5.0%
!! TTAAATATATATCTATATAT+AGG + chr5_1:56935486-56935505 None:intergenic 5.0%
!! ATATAGATATATATTTAAAA+AGG - chr5_1:56935488-56935507 Msa0738870:CDS 5.0%
CATGCTAACCCTCTTGGCTA+TGG - chr5_1:56935029-56935048 Msa0738870:three_prime_UTR 50.0%
!! CTCACCCTTTTTAGCATCGG+TGG + chr5_1:56935100-56935119 None:intergenic 50.0%
CACCGTGGTTATAACCACCA+TGG + chr5_1:56935602-56935621 None:intergenic 50.0%
CATGGTGGTTATAACCACGG+TGG - chr5_1:56935600-56935619 Msa0738870:CDS 50.0%
! AACCACGGTGGTGGTTACAA+TGG - chr5_1:56935612-56935631 Msa0738870:CDS 50.0%
! CATGGTGGAGGTGGTTACAA+CGG - chr5_1:56935666-56935685 Msa0738870:CDS 50.0%
! AACGGTGGTGGTTACAACCA+CGG - chr5_1:56935684-56935703 Msa0738870:intron 50.0%
TGTAACCACCACCACCATTG+TGG + chr5_1:56935722-56935741 None:intergenic 50.0%
CATTGTAACCACCTCCACCA+TGG + chr5_1:56935803-56935822 None:intergenic 50.0%
! CATGGTGGAGGTGGTTACAA+TGG - chr5_1:56935666-56935685 Msa0738870:CDS 50.0%
!! TACAATGGTGGTGGAGGACA+CGG - chr5_1:56935816-56935835 Msa0738870:CDS 50.0%
!! TACAATGGTGGTGGAGGTCA+CGG - chr5_1:56935858-56935877 Msa0738870:intron 50.0%
! GGTGGTGGTAGTTACAACCA+TGG - chr5_1:56935954-56935973 Msa0738870:intron 50.0%
GGTGGTAGTTACAACCATGG+AGG - chr5_1:56935957-56935976 Msa0738870:intron 50.0%
GGAGGAAGTTACAACCATGG+TGG - chr5_1:56935975-56935994 Msa0738870:intron 50.0%
GGAAGTTACAACCATGGTGG+AGG - chr5_1:56935978-56935997 Msa0738870:intron 50.0%
GGTTGTAACTACCTCCACCA+TGG + chr5_1:56935992-56936011 None:intergenic 50.0%
GGTGGAGGTAGTTACAACCA+CGG - chr5_1:56935993-56936012 Msa0738870:intron 50.0%
GGAGGAGGTAGTTATCACCA+CGG - chr5_1:56936014-56936033 Msa0738870:intron 50.0%
GATGTGCAGCAGTTTCAGTG+TGG - chr5_1:56936239-56936258 Msa0738870:intron 50.0%
CATGCTAACCCTCTTGGCTA+TGG - chr5_1:56935029-56935048 Msa0738870:three_prime_UTR 50.0%
!! CTCACCCTTTTTAGCATCGG+TGG + chr5_1:56935100-56935119 None:intergenic 50.0%
CACCGTGGTTATAACCACCA+TGG + chr5_1:56935602-56935621 None:intergenic 50.0%
CATGGTGGTTATAACCACGG+TGG - chr5_1:56935600-56935619 Msa0738870:CDS 50.0%
! AACCACGGTGGTGGTTACAA+TGG - chr5_1:56935612-56935631 Msa0738870:CDS 50.0%
! CATGGTGGAGGTGGTTACAA+CGG - chr5_1:56935666-56935685 Msa0738870:CDS 50.0%
! AACGGTGGTGGTTACAACCA+CGG - chr5_1:56935684-56935703 Msa0738870:intron 50.0%
TGTAACCACCACCACCATTG+TGG + chr5_1:56935722-56935741 None:intergenic 50.0%
CATTGTAACCACCTCCACCA+TGG + chr5_1:56935803-56935822 None:intergenic 50.0%
! CATGGTGGAGGTGGTTACAA+TGG - chr5_1:56935666-56935685 Msa0738870:CDS 50.0%
!! TACAATGGTGGTGGAGGACA+CGG - chr5_1:56935816-56935835 Msa0738870:CDS 50.0%
!! TACAATGGTGGTGGAGGTCA+CGG - chr5_1:56935858-56935877 Msa0738870:intron 50.0%
! GGTGGTGGTAGTTACAACCA+TGG - chr5_1:56935954-56935973 Msa0738870:intron 50.0%
GGTGGTAGTTACAACCATGG+AGG - chr5_1:56935957-56935976 Msa0738870:intron 50.0%
GGAGGAAGTTACAACCATGG+TGG - chr5_1:56935975-56935994 Msa0738870:intron 50.0%
GGAAGTTACAACCATGGTGG+AGG - chr5_1:56935978-56935997 Msa0738870:intron 50.0%
GGTTGTAACTACCTCCACCA+TGG + chr5_1:56935992-56936011 None:intergenic 50.0%
GGTGGAGGTAGTTACAACCA+CGG - chr5_1:56935993-56936012 Msa0738870:intron 50.0%
GGAGGAGGTAGTTATCACCA+CGG - chr5_1:56936014-56936033 Msa0738870:intron 50.0%
GATGTGCAGCAGTTTCAGTG+TGG - chr5_1:56936239-56936258 Msa0738870:intron 50.0%
AACTGGTGCTCCTAGGACAC+TGG + chr5_1:56935455-56935474 None:intergenic 55.0%
TATGGAGGCTACAGCCATGG+TGG - chr5_1:56935585-56935604 Msa0738870:CDS 55.0%
GGTGGTTATAACCACGGTGG+TGG - chr5_1:56935603-56935622 Msa0738870:CDS 55.0%
CACCATTGTAACCACCACCG+TGG + chr5_1:56935617-56935636 None:intergenic 55.0%
! CACGGTGGTGGTTACAATGG+TGG - chr5_1:56935615-56935634 Msa0738870:CDS 55.0%
! GGTGGTGGTTACAATGGTGG+AGG - chr5_1:56935618-56935637 Msa0738870:CDS 55.0%
GGTGGAGGTTATAACCACGG+CGG - chr5_1:56935633-56935652 Msa0738870:CDS 55.0%
GGAGGTTACAACCATGGTGG+AGG - chr5_1:56935654-56935673 Msa0738870:CDS 55.0%
! GGTTACAACCATGGTGGAGG+TGG - chr5_1:56935657-56935676 Msa0738870:CDS 55.0%
CGTTGTAACCACCTCCACCA+TGG + chr5_1:56935668-56935687 None:intergenic 55.0%
GGTGGAGGTGGTTACCACAA+TGG - chr5_1:56935705-56935724 Msa0738870:CDS 55.0%
GGAGGTGGTTACCACAATGG+TGG - chr5_1:56935708-56935727 Msa0738870:CDS 55.0%
GGTGGTTACCACAATGGTGG+TGG - chr5_1:56935711-56935730 Msa0738870:CDS 55.0%
!! GGTTACCACAATGGTGGTGG+TGG - chr5_1:56935714-56935733 Msa0738870:CDS 55.0%
!! GGTGGTGGTGGTTACAAAGG+TGG - chr5_1:56935726-56935745 Msa0738870:CDS 55.0%
! GGTGGTGGTTACAAAGGTGG+AGG - chr5_1:56935729-56935748 Msa0738870:CDS 55.0%
GGTGGTTACAAAGGTGGAGG+TGG - chr5_1:56935732-56935751 Msa0738870:CDS 55.0%
GGTGGAGGTGGTTACCACAA+CGG - chr5_1:56935705-56935724 Msa0738870:CDS 55.0%
! AACGGTGGCGGTGGATACAA+TGG - chr5_1:56935762-56935781 Msa0738870:CDS 55.0%
! GGTGGATACAATGGTGGAGG+TGG - chr5_1:56935771-56935790 Msa0738870:CDS 55.0%
GGTGGAGGTGGTTACAACCA+TGG - chr5_1:56935783-56935802 Msa0738870:CDS 55.0%
GGAGGTGGTTACAACCATGG+TGG - chr5_1:56935786-56935805 Msa0738870:CDS 55.0%
GGTGGTTACAACCATGGTGG+AGG - chr5_1:56935789-56935808 Msa0738870:CDS 55.0%
! GGTTACAACCATGGTGGAGG+TGG - chr5_1:56935657-56935676 Msa0738870:CDS 55.0%
GGTGGAGGTGGTTACAATGG+TGG - chr5_1:56935804-56935823 Msa0738870:CDS 55.0%
GGAGGTGGTTACAATGGTGG+TGG - chr5_1:56935807-56935826 Msa0738870:CDS 55.0%
!! GGTGGTTACAATGGTGGTGG+AGG - chr5_1:56935810-56935829 Msa0738870:CDS 55.0%
CACGGTGGAGGTGGTTACAA+TGG - chr5_1:56935843-56935862 Msa0738870:CDS 55.0%
GGTGGAGGTGGTTACAATGG+TGG - chr5_1:56935804-56935823 Msa0738870:CDS 55.0%
GGAGGTGGTTACAATGGTGG+TGG - chr5_1:56935807-56935826 Msa0738870:CDS 55.0%
!! GGTGGTTACAATGGTGGTGG+AGG - chr5_1:56935810-56935829 Msa0738870:CDS 55.0%
GTCTGTTGCCGTGCAAACTG+AGG - chr5_1:56935899-56935918 Msa0738870:intron 55.0%
GGAGGTAGTTACAACCACGG+AGG - chr5_1:56935996-56936015 Msa0738870:intron 55.0%
GGTAGTTACAACCACGGAGG+AGG - chr5_1:56935999-56936018 Msa0738870:intron 55.0%
GGTGATAACTACCTCCTCCG+TGG + chr5_1:56936013-56936032 None:intergenic 55.0%
GGAGGTAGTTATCACCACGG+TGG - chr5_1:56936017-56936036 Msa0738870:intron 55.0%
GGTAGTTATCACCACGGTGG+AGG - chr5_1:56936020-56936039 Msa0738870:intron 55.0%
AGTTATCACCACGGTGGAGG+TGG - chr5_1:56936023-56936042 Msa0738870:intron 55.0%
GGTGGAGGTGGTTACAACCA+CGG - chr5_1:56935783-56935802 Msa0738870:CDS 55.0%
AACTGGTGCTCCTAGGACAC+TGG + chr5_1:56935455-56935474 None:intergenic 55.0%
TATGGAGGCTACAGCCATGG+TGG - chr5_1:56935585-56935604 Msa0738870:CDS 55.0%
GGTGGTTATAACCACGGTGG+TGG - chr5_1:56935603-56935622 Msa0738870:CDS 55.0%
CACCATTGTAACCACCACCG+TGG + chr5_1:56935617-56935636 None:intergenic 55.0%
! CACGGTGGTGGTTACAATGG+TGG - chr5_1:56935615-56935634 Msa0738870:CDS 55.0%
! GGTGGTGGTTACAATGGTGG+AGG - chr5_1:56935618-56935637 Msa0738870:CDS 55.0%
GGTGGAGGTTATAACCACGG+CGG - chr5_1:56935633-56935652 Msa0738870:CDS 55.0%
GGAGGTTACAACCATGGTGG+AGG - chr5_1:56935654-56935673 Msa0738870:CDS 55.0%
! GGTTACAACCATGGTGGAGG+TGG - chr5_1:56935657-56935676 Msa0738870:CDS 55.0%
CGTTGTAACCACCTCCACCA+TGG + chr5_1:56935668-56935687 None:intergenic 55.0%
GGTGGAGGTGGTTACCACAA+TGG - chr5_1:56935705-56935724 Msa0738870:CDS 55.0%
GGAGGTGGTTACCACAATGG+TGG - chr5_1:56935708-56935727 Msa0738870:CDS 55.0%
GGTGGTTACCACAATGGTGG+TGG - chr5_1:56935711-56935730 Msa0738870:CDS 55.0%
!! GGTTACCACAATGGTGGTGG+TGG - chr5_1:56935714-56935733 Msa0738870:CDS 55.0%
!! GGTGGTGGTGGTTACAAAGG+TGG - chr5_1:56935726-56935745 Msa0738870:CDS 55.0%
! GGTGGTGGTTACAAAGGTGG+AGG - chr5_1:56935729-56935748 Msa0738870:CDS 55.0%
GGTGGTTACAAAGGTGGAGG+TGG - chr5_1:56935732-56935751 Msa0738870:CDS 55.0%
GGTGGAGGTGGTTACCACAA+CGG - chr5_1:56935705-56935724 Msa0738870:CDS 55.0%
! AACGGTGGCGGTGGATACAA+TGG - chr5_1:56935762-56935781 Msa0738870:CDS 55.0%
! GGTGGATACAATGGTGGAGG+TGG - chr5_1:56935771-56935790 Msa0738870:CDS 55.0%
GGTGGAGGTGGTTACAACCA+TGG - chr5_1:56935783-56935802 Msa0738870:CDS 55.0%
GGAGGTGGTTACAACCATGG+TGG - chr5_1:56935786-56935805 Msa0738870:CDS 55.0%
GGTGGTTACAACCATGGTGG+AGG - chr5_1:56935789-56935808 Msa0738870:CDS 55.0%
! GGTTACAACCATGGTGGAGG+TGG - chr5_1:56935657-56935676 Msa0738870:CDS 55.0%
GGTGGAGGTGGTTACAATGG+TGG - chr5_1:56935804-56935823 Msa0738870:CDS 55.0%
GGAGGTGGTTACAATGGTGG+TGG - chr5_1:56935807-56935826 Msa0738870:CDS 55.0%
!! GGTGGTTACAATGGTGGTGG+AGG - chr5_1:56935810-56935829 Msa0738870:CDS 55.0%
CACGGTGGAGGTGGTTACAA+TGG - chr5_1:56935843-56935862 Msa0738870:CDS 55.0%
GGTGGAGGTGGTTACAATGG+TGG - chr5_1:56935804-56935823 Msa0738870:CDS 55.0%
GGAGGTGGTTACAATGGTGG+TGG - chr5_1:56935807-56935826 Msa0738870:CDS 55.0%
!! GGTGGTTACAATGGTGGTGG+AGG - chr5_1:56935810-56935829 Msa0738870:CDS 55.0%
GTCTGTTGCCGTGCAAACTG+AGG - chr5_1:56935899-56935918 Msa0738870:intron 55.0%
GGAGGTAGTTACAACCACGG+AGG - chr5_1:56935996-56936015 Msa0738870:intron 55.0%
GGTAGTTACAACCACGGAGG+AGG - chr5_1:56935999-56936018 Msa0738870:intron 55.0%
GGTGATAACTACCTCCTCCG+TGG + chr5_1:56936013-56936032 None:intergenic 55.0%
GGAGGTAGTTATCACCACGG+TGG - chr5_1:56936017-56936036 Msa0738870:intron 55.0%
GGTAGTTATCACCACGGTGG+AGG - chr5_1:56936020-56936039 Msa0738870:intron 55.0%
AGTTATCACCACGGTGGAGG+TGG - chr5_1:56936023-56936042 Msa0738870:intron 55.0%
GGTGGAGGTGGTTACAACCA+CGG - chr5_1:56935783-56935802 Msa0738870:CDS 55.0%
GGAGGTTATAACCACGGCGG+AGG - chr5_1:56935636-56935655 Msa0738870:CDS 60.0%
CATGGTTGTAACCTCCGCCG+TGG + chr5_1:56935650-56935669 None:intergenic 60.0%
CACGGCGGAGGTTACAACCA+TGG - chr5_1:56935648-56935667 Msa0738870:CDS 60.0%
GGCGGAGGTTACAACCATGG+TGG - chr5_1:56935651-56935670 Msa0738870:CDS 60.0%
GGTGGAGGTGGTTACAACGG+TGG - chr5_1:56935669-56935688 Msa0738870:CDS 60.0%
GGAGGTGGTTACAACGGTGG+TGG - chr5_1:56935672-56935691 Msa0738870:intron 60.0%
! GGTGGTGGTTACAACCACGG+TGG - chr5_1:56935687-56935706 Msa0738870:intron 60.0%
GGTGGTTACAACCACGGTGG+AGG - chr5_1:56935690-56935709 Msa0738870:intron 60.0%
GGTTACAACCACGGTGGAGG+TGG - chr5_1:56935693-56935712 Msa0738870:intron 60.0%
TGTGGTAACCACCTCCACCG+TGG + chr5_1:56935704-56935723 None:intergenic 60.0%
GGAGGTGGTTACCACAACGG+TGG - chr5_1:56935747-56935766 Msa0738870:CDS 60.0%
GGTGGTTACCACAACGGTGG+CGG - chr5_1:56935750-56935769 Msa0738870:CDS 60.0%
TGTATCCACCGCCACCGTTG+TGG + chr5_1:56935761-56935780 None:intergenic 60.0%
! GGTGGCGGTGGATACAATGG+TGG - chr5_1:56935765-56935784 Msa0738870:CDS 60.0%
GGCGGTGGATACAATGGTGG+AGG - chr5_1:56935768-56935787 Msa0738870:CDS 60.0%
!! AATGGTGGTGGAGGACACGG+TGG - chr5_1:56935819-56935838 Msa0738870:CDS 60.0%
!! AATGGTGGTGGAGGTCACGG+TGG - chr5_1:56935861-56935880 Msa0738870:intron 60.0%
GGTTGTAACCACCTCCACCG+TGG + chr5_1:56936034-56936053 None:intergenic 60.0%
GGAGGTGGTTACAACCACGG+TGG - chr5_1:56936038-56936057 Msa0738870:intron 60.0%
GGTGGTTACAACCACGGTGG+AGG - chr5_1:56935690-56935709 Msa0738870:intron 60.0%
GGTTACAACCACGGTGGAGG+TGG - chr5_1:56935693-56935712 Msa0738870:intron 60.0%
AACCACGGTGGAGGTGGTCA+CGG - chr5_1:56936050-56936069 Msa0738870:intron 60.0%
!! TCACGGTGCCGACCAAACTG+AGG - chr5_1:56936100-56936119 Msa0738870:intron 60.0%
GGAGGTTATAACCACGGCGG+AGG - chr5_1:56935636-56935655 Msa0738870:CDS 60.0%
CATGGTTGTAACCTCCGCCG+TGG + chr5_1:56935650-56935669 None:intergenic 60.0%
CACGGCGGAGGTTACAACCA+TGG - chr5_1:56935648-56935667 Msa0738870:CDS 60.0%
GGCGGAGGTTACAACCATGG+TGG - chr5_1:56935651-56935670 Msa0738870:CDS 60.0%
GGTGGAGGTGGTTACAACGG+TGG - chr5_1:56935669-56935688 Msa0738870:CDS 60.0%
GGAGGTGGTTACAACGGTGG+TGG - chr5_1:56935672-56935691 Msa0738870:intron 60.0%
! GGTGGTGGTTACAACCACGG+TGG - chr5_1:56935687-56935706 Msa0738870:intron 60.0%
GGTGGTTACAACCACGGTGG+AGG - chr5_1:56935690-56935709 Msa0738870:intron 60.0%
GGTTACAACCACGGTGGAGG+TGG - chr5_1:56935693-56935712 Msa0738870:intron 60.0%
TGTGGTAACCACCTCCACCG+TGG + chr5_1:56935704-56935723 None:intergenic 60.0%
GGAGGTGGTTACCACAACGG+TGG - chr5_1:56935747-56935766 Msa0738870:CDS 60.0%
GGTGGTTACCACAACGGTGG+CGG - chr5_1:56935750-56935769 Msa0738870:CDS 60.0%
TGTATCCACCGCCACCGTTG+TGG + chr5_1:56935761-56935780 None:intergenic 60.0%
! GGTGGCGGTGGATACAATGG+TGG - chr5_1:56935765-56935784 Msa0738870:CDS 60.0%
GGCGGTGGATACAATGGTGG+AGG - chr5_1:56935768-56935787 Msa0738870:CDS 60.0%
!! AATGGTGGTGGAGGACACGG+TGG - chr5_1:56935819-56935838 Msa0738870:CDS 60.0%
!! AATGGTGGTGGAGGTCACGG+TGG - chr5_1:56935861-56935880 Msa0738870:intron 60.0%
GGTTGTAACCACCTCCACCG+TGG + chr5_1:56936034-56936053 None:intergenic 60.0%
GGAGGTGGTTACAACCACGG+TGG - chr5_1:56936038-56936057 Msa0738870:intron 60.0%
GGTGGTTACAACCACGGTGG+AGG - chr5_1:56935690-56935709 Msa0738870:intron 60.0%
GGTTACAACCACGGTGGAGG+TGG - chr5_1:56935693-56935712 Msa0738870:intron 60.0%
AACCACGGTGGAGGTGGTCA+CGG - chr5_1:56936050-56936069 Msa0738870:intron 60.0%
!! TCACGGTGCCGACCAAACTG+AGG - chr5_1:56936100-56936119 Msa0738870:intron 60.0%
! GGTTACCACAACGGTGGCGG+TGG - chr5_1:56935753-56935772 Msa0738870:CDS 65.0%
GGTGGAGGACACGGTGGTCA+CGG - chr5_1:56935825-56935844 Msa0738870:CDS 65.0%
GGTGGAGGTCACGGTGGTCA+TGG - chr5_1:56935867-56935886 Msa0738870:intron 65.0%
GGAGGTCACGGTGGTCATGG+TGG - chr5_1:56935870-56935889 Msa0738870:intron 65.0%
GGAGGTGGTCACGGTGGACA+CGG - chr5_1:56936059-56936078 Msa0738870:intron 65.0%
GGACACGGTGGAGGTGGTCA+CGG - chr5_1:56936074-56936093 Msa0738870:intron 65.0%
GGAGGTGGTCACGGTGGTCA+CGG - chr5_1:56936083-56936102 Msa0738870:intron 65.0%
! GGTTACCACAACGGTGGCGG+TGG - chr5_1:56935753-56935772 Msa0738870:CDS 65.0%
GGTGGAGGACACGGTGGTCA+CGG - chr5_1:56935825-56935844 Msa0738870:CDS 65.0%
GGTGGAGGTCACGGTGGTCA+TGG - chr5_1:56935867-56935886 Msa0738870:intron 65.0%
GGAGGTCACGGTGGTCATGG+TGG - chr5_1:56935870-56935889 Msa0738870:intron 65.0%
GGAGGTGGTCACGGTGGACA+CGG - chr5_1:56936059-56936078 Msa0738870:intron 65.0%
GGACACGGTGGAGGTGGTCA+CGG - chr5_1:56936074-56936093 Msa0738870:intron 65.0%
GGAGGTGGTCACGGTGGTCA+CGG - chr5_1:56936083-56936102 Msa0738870:intron 65.0%
GGAGGACACGGTGGTCACGG+TGG - chr5_1:56935828-56935847 Msa0738870:CDS 70.0%
GGACACGGTGGTCACGGTGG+AGG - chr5_1:56935831-56935850 Msa0738870:CDS 70.0%
CACGGTGGTCACGGTGGAGG+TGG - chr5_1:56935834-56935853 Msa0738870:CDS 70.0%
CACCGTGACCACCTCCACCG+TGG + chr5_1:56936055-56936074 None:intergenic 70.0%
CACGGTGGAGGTGGTCACGG+TGG - chr5_1:56936053-56936072 Msa0738870:intron 70.0%
GGTGGTCACGGTGGACACGG+TGG - chr5_1:56936062-56936081 Msa0738870:intron 70.0%
GGTCACGGTGGACACGGTGG+AGG - chr5_1:56936065-56936084 Msa0738870:intron 70.0%
CACGGTGGACACGGTGGAGG+TGG - chr5_1:56936068-56936087 Msa0738870:intron 70.0%
CACGGTGGAGGTGGTCACGG+TGG - chr5_1:56936053-56936072 Msa0738870:intron 70.0%
GGAGGACACGGTGGTCACGG+TGG - chr5_1:56935828-56935847 Msa0738870:CDS 70.0%
GGACACGGTGGTCACGGTGG+AGG - chr5_1:56935831-56935850 Msa0738870:CDS 70.0%
CACGGTGGTCACGGTGGAGG+TGG - chr5_1:56935834-56935853 Msa0738870:CDS 70.0%
CACCGTGACCACCTCCACCG+TGG + chr5_1:56936055-56936074 None:intergenic 70.0%
CACGGTGGAGGTGGTCACGG+TGG - chr5_1:56936053-56936072 Msa0738870:intron 70.0%
GGTGGTCACGGTGGACACGG+TGG - chr5_1:56936062-56936081 Msa0738870:intron 70.0%
GGTCACGGTGGACACGGTGG+AGG - chr5_1:56936065-56936084 Msa0738870:intron 70.0%
CACGGTGGACACGGTGGAGG+TGG - chr5_1:56936068-56936087 Msa0738870:intron 70.0%
CACGGTGGAGGTGGTCACGG+TGG - chr5_1:56936053-56936072 Msa0738870:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 56934964 56936469 56934964 ID=Msa0738870;Name=Msa0738870
chr5_1 mRNA 56934964 56936469 56934964 ID=Msa0738870-mRNA-1;Parent=Msa0738870;Name=Msa0738870-mRNA-1;_AED=0.05;_eAED=0.05;_QI=42|0.33|0.5|1|0.33|0.25|4|330|209
chr5_1 exon 56934964 56935433 56934964 ID=Msa0738870-mRNA-1:exon:16111;Parent=Msa0738870-mRNA-1
chr5_1 exon 56935473 56935688 56935473 ID=Msa0738870-mRNA-1:exon:16110;Parent=Msa0738870-mRNA-1
chr5_1 exon 56935698 56935862 56935698 ID=Msa0738870-mRNA-1:exon:16109;Parent=Msa0738870-mRNA-1
chr5_1 exon 56936319 56936469 56936319 ID=Msa0738870-mRNA-1:exon:16108;Parent=Msa0738870-mRNA-1
chr5_1 five_prime_UTR 56936428 56936469 56936428 ID=Msa0738870-mRNA-1:five_prime_utr;Parent=Msa0738870-mRNA-1
chr5_1 CDS 56936319 56936427 56936319 ID=Msa0738870-mRNA-1:cds;Parent=Msa0738870-mRNA-1
chr5_1 CDS 56935698 56935862 56935698 ID=Msa0738870-mRNA-1:cds;Parent=Msa0738870-mRNA-1
chr5_1 CDS 56935473 56935688 56935473 ID=Msa0738870-mRNA-1:cds;Parent=Msa0738870-mRNA-1
chr5_1 CDS 56935294 56935433 56935294 ID=Msa0738870-mRNA-1:cds;Parent=Msa0738870-mRNA-1
chr5_1 three_prime_UTR 56934964 56935293 56934964 ID=Msa0738870-mRNA-1:three_prime_utr;Parent=Msa0738870-mRNA-1
Gene Sequence

>Msa0738870

ATGGGTTCGAAAAAGGCAATTCTCATGCTAACCCTCTTGGCTATGGCTCTTATTTCATCAGTGATGTCCGCTAGGGACTTAACTGAAACTTCCACCGATGCTAAAAAGGTAAATGATGCCAAATATGGAGGCTACAGCCATGGTGGTTATAACCACGGTGGTGGTTACAATGGTGGAGGTTATAACCACGGCGGAGGTTACAACCATGGTGGAGGTGGTTACAACGGTGGTGGTTACAACCACGGTGGAGGTGGTTACCACAATGGTGGTGGTGGTGGAGGTGGTTACCACAACGGTGGCGGTGGATACAATGGTGGAGGTGGTTACAACCATGGTGGAGGTGGTTACAATGGTGGTGGAGGACACGGTGGTCACGGTGGAGGTGGTTACAATGGTGGTGGAGGTCACGGTGGTCATGGTGGTGCTGAGTCTGTTGCCGTGCAAACTGAGGAAAAGACTAATGAAATGAATGATGCCAAATATGGTGGTGGTAGTTACAACCACGGAGGAGGTAGTTATCACCACGGTGGAGGTGGTTACAACCACGGTGGAGGTGGTCACGGTGGACACGGTGGAGGTGGTCACGGTGGTCACGGTGCCGACCAAACTGAGGACAAAACTCAAAACTGA

Protein sequence

>Msa0738870

MGSKKAILMLTLLAMALISSVMSARDLTETSTDAKKVNDAKYGGYSHGGYNHGGGYNGGGYNHGGGYNHGGGGYNGGGYNHGGGGYHNGGGGGGGYHNGGGGYNGGGGYNHGGGGYNGGGGHGGHGGGGYNGGGGHGGHGGAESVAVQTEEKTNEMNDAKYGGGSYNHGGGSYHHGGGGYNHGGGGHGGHGGGGHGGHGADQTEDKTQN*