AlfalfaGEDB | Msa0819390

M. sativa cultivar zhongmu-4 / Msa0819390

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0168640	Msa0819390	-0.801564	8.483034e-49	-8.615850e-47
Msa0295580	Msa0819390	0.827920	1.198323e-54	-8.615850e-47
Msa0419640	Msa0819390	-0.816353	5.777791e-52	-8.615850e-47
Msa0426810	Msa0819390	0.828138	1.061850e-54	-8.615850e-47
Msa0609970	Msa0819390	0.805073	1.591706e-49	-8.615850e-47
Msa0622340	Msa0819390	0.811169	8.007783e-51	-8.615850e-47
Msa0650620	Msa0819390	0.816038	6.794717e-52	-8.615850e-47
Msa0692110	Msa0819390	0.806692	7.271348e-50	-8.615850e-47
Msa0738850	Msa0819390	0.814541	1.461537e-51	-8.615850e-47
Msa0738860	Msa0819390	0.833371	5.542742e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Find 42 sgRNAs with CRISPR-Local

Find 54 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATATGGCGGTTACCACAA+TGG	0.601953	5_3:-55869327	Msa0819380:CDS
AATGGCAACCACCTCCACCA+TGG	0.681347	5_3:+55869067	Msa0819390:CDS
AATGGCCGTGGCAATAGTAA+TGG	0.601894	5_3:+55869049	Msa0819390:CDS
AATGGCCGTGGCAATAGTGA+TGG	0.615442	5_3:+55869217	Msa0819390:exon
AATGGTGGTGGACATTACTA+TGG	0.429163	5_3:-55869288	Msa0819380:CDS
ACTCGGCATATGAGCAGCAA+TGG	0.602148	5_3:+55869199	Msa0819390:CDS
AGCTTGCACGGCAACAAACT+CGG	0.602417	5_3:+55869182	Msa0819390:intron
AGTAATGTCCACCACCATTG+TGG	0.641701	5_3:+55869292	Msa0819390:three_prime_UTR
ATTCAGCATGTGAGCAGCAA+TGG	0.536032	5_3:+55869031	Msa0819390:CDS
ATTGTGGTAACCGCCATATT+TGG	0.317393	5_3:+55869329	Msa0819390:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAGTAAACGATGCCAAATA+TGG	-	chr5_3:55869147-55869166	Msa0819380:CDS	35.0%
GAAGTAAACGATGCCAAATA+TGG	-	chr5_3:55869147-55869166	Msa0819380:CDS	35.0%
GTAAACGATGCCAAATATGG+TGG	-	chr5_3:55869144-55869163	Msa0819380:CDS	40.0%
AAATATGGCGGTTACCACAA+TGG	-	chr5_3:55869330-55869349	Msa0819380:CDS	40.0%
ATTGTGGTAACCGCCATATT+TGG	+	chr5_3:55869329-55869348	Msa0819390:three_prime_UTR	40.0%
GTAAACGATGCCAAATATGG+CGG	-	chr5_3:55869144-55869163	Msa0819380:CDS	40.0%
ATTCAGCATGTGAGCAGCAA+TGG	+	chr5_3:55869031-55869050	Msa0819390:CDS	45.0%
AATGGCCGTGGCAATAGTAA+TGG	+	chr5_3:55869049-55869068	Msa0819390:CDS	45.0%
GGTTGCCATTACTATTGCCA+CGG	-	chr5_3:55869057-55869076	Msa0819380:CDS	45.0%
ATGTCCACCACCACCATATT+TGG	+	chr5_3:55869131-55869150	Msa0819390:intron	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	55868941	55869385	55868941	ID=Msa0819390;Name=Msa0819390
chr5_3	mRNA	55868941	55869385	55868941	ID=Msa0819390-mRNA-1;Parent=Msa0819390;Name=Msa0819390-mRNA-1;_AED=0.25;_eAED=0.29;_QI=0\|0\|0.5\|1\|0\|0\|2\|152\|72
chr5_3	exon	55868941	55869109	55868941	ID=Msa0819390-mRNA-1:exon:16860;Parent=Msa0819390-mRNA-1
chr5_3	exon	55869184	55869385	55869184	ID=Msa0819390-mRNA-1:exon:16861;Parent=Msa0819390-mRNA-1
chr5_3	CDS	55868941	55869109	55868941	ID=Msa0819390-mRNA-1:cds;Parent=Msa0819390-mRNA-1
chr5_3	CDS	55869184	55869233	55869184	ID=Msa0819390-mRNA-1:cds;Parent=Msa0819390-mRNA-1
chr5_3	three_prime_UTR	55869234	55869385	55869234	ID=Msa0819390-mRNA-1:three_prime_utr;Parent=Msa0819390-mRNA-1

Gene Sequence	>Msa0819390 ATGAAATATATTACTAAGAAAGAGTGCATCATACATGATCATAGCATTATGATCAGTTCTGAGTTTTGTCCTCAGCTTGCACGGCAACAAATTCAGCATGTGAGCAGCAATGGCCGTGGCAATAGTAATGGCAACCACCTCCACCATGGTGAGAACCACCTCCACCGTGCTTGCACGGCAACAAACTCGGCATATGAGCAGCAATGGCCGTGGCAATAG
Protein sequence	>Msa0819390 MKYITKKECIIHDHSIMISSEFCPQLARQQIQHVSSNGRGNSNGNHLHHGENHLHRACTATNSAYEQQWPWQ*