AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0929940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0929940 MtrunA17_Chr8g0392891 98.047 256 5 0 1 256 1 256 0.0 511
Msa0929940 MtrunA17_Chr1g0179231 36.000 100 52 4 134 225 74 169 5.09e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0929940 AT1G18170.1 70.430 186 51 2 75 256 62 247 1.32e-95 281
Msa0929940 AT1G73655.1 50.397 252 99 4 1 251 1 227 2.54e-80 241
Msa0929940 AT3G10060.1 29.379 177 101 5 87 255 60 220 8.20e-13 66.2

Find 91 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGAGAATGGTGCTGATTT+AGG 0.153499 6_2:-78754024 Msa0929940:CDS
TTCATACAATTAGCTTTAAT+TGG 0.179054 6_2:+78753768 None:intergenic
GATGAAACAACTGGTTTAAT+AGG 0.212922 6_2:+78754680 None:intergenic
CTAAACATGGCCACTATCTT+TGG 0.258527 6_2:-78754878 Msa0929940:exon
TAATGATAATAAGTTTGATT+TGG 0.285903 6_2:+78754906 None:intergenic
GAGAGAATGGTGCTGATTTA+GGG 0.288158 6_2:-78754023 Msa0929940:CDS
AGTTATTGTGCCTCCTGAAT+TGG 0.295641 6_2:-78754052 Msa0929940:CDS
TTTGGTTGTGATTGATATAA+TGG 0.298752 6_2:-78754229 Msa0929940:CDS
GTATGGAATGGATTAAATAT+AGG 0.307913 6_2:-78753829 Msa0929940:three_prime_UTR
ATACATGTCAGTGTAAAATA+TGG 0.344077 6_2:-78753795 Msa0929940:three_prime_UTR
TTGACCAGACGGTTTGGCCT+TGG 0.354356 6_2:-78754620 Msa0929940:CDS
TTCTCTCTAAATCCCAATTC+AGG 0.369157 6_2:+78754039 None:intergenic
CAAAGATAGTGGCCATGTTT+AGG 0.369174 6_2:+78754879 None:intergenic
GAAACCATTGGCTCTAGTTA+TGG 0.370613 6_2:-78754154 Msa0929940:CDS
AAACCATTGGCTCTAGTTAT+GGG 0.372920 6_2:-78754153 Msa0929940:CDS
ATAATTAACCTTATGCCATT+AGG 0.374600 6_2:+78754370 None:intergenic
TCACACACACCCTTACTATA+TGG 0.378280 6_2:+78754123 None:intergenic
TGTGATGACTGGTTCTTGTA+TGG 0.395972 6_2:+78754831 None:intergenic
GCCTTGGAGCTGGTCTTGCA+TGG 0.396282 6_2:-78754604 Msa0929940:CDS
ACCAGTTGTTTCATCAACTA+AGG 0.400326 6_2:-78754672 Msa0929940:CDS
GTTATTGTGCCTCCTGAATT+GGG 0.401025 6_2:-78754051 Msa0929940:CDS
ATGCATCATGTGCCTCTTGT+TGG 0.413004 6_2:-78753719 Msa0929940:three_prime_UTR
TATGCCAAGGCGAGGTGATT+TGG 0.421986 6_2:-78754247 Msa0929940:CDS
CCTTGGAGCTGGTCTTGCAT+GGG 0.424931 6_2:-78754603 Msa0929940:CDS
TTGGTTGTGATTGATATAAT+GGG 0.427668 6_2:-78754228 Msa0929940:CDS
GGTTGAATGTCTCTAATTTG+AGG 0.431102 6_2:+78753639 None:intergenic
ACTTCCTTGACCAGACGGTT+TGG 0.433297 6_2:-78754626 Msa0929940:CDS
AGACGGTTTGGCCTTGGAGC+TGG 0.438403 6_2:-78754614 Msa0929940:CDS
GCATGTACACTAGAGTGCTT+TGG 0.438433 6_2:-78753903 Msa0929940:three_prime_UTR
AGGAATCTGTTGCTGTGCTT+TGG 0.442859 6_2:+78754700 None:intergenic
ACCTTAGTTGATGAAACAAC+TGG 0.450082 6_2:+78754671 None:intergenic
GGGGTCAAGGCCATATAGTA+AGG 0.452971 6_2:-78754133 Msa0929940:CDS
AGCTCCAAGGCCAAACCGTC+TGG 0.454662 6_2:+78754616 None:intergenic
GGAGCTGGTCTTGCATGGGT+TGG 0.455263 6_2:-78754599 Msa0929940:CDS
AGGTACTATGAATTGAAAAT+CGG 0.465928 6_2:-78754279 Msa0929940:CDS
GTTGTTGACTGTGGAGATGA+TGG 0.481395 6_2:+78754758 None:intergenic
AAAGAGATGATTCTGCCTAA+TGG 0.485200 6_2:-78754385 Msa0929940:CDS
GTGTTTGTGAACACATTTGA+AGG 0.494203 6_2:-78754183 Msa0929940:CDS
GTGATGACTGGTTCTTGTAT+GGG 0.494469 6_2:+78754832 None:intergenic
GGTTGCGGTTGTTGTGGTGG+AGG 0.494679 6_2:+78754788 None:intergenic
GAATTGGGATTTAGAGAGAA+TGG 0.496442 6_2:-78754036 Msa0929940:CDS
AACACTTGAATACGTTGTAC+AGG 0.502708 6_2:-78753974 Msa0929940:CDS
GAGGGTTGCGGTTGTTGTGG+TGG 0.510547 6_2:+78754785 None:intergenic
AAACCGTCTGGTCAAGGAAG+TGG 0.514843 6_2:+78754628 None:intergenic
CCTGAGGGTTGCGGTTGTTG+TGG 0.518773 6_2:+78754782 None:intergenic
TGATTCTGCCTAATGGCATA+AGG 0.521446 6_2:-78754378 Msa0929940:intron
TTCAAATTTGTTGTTGACTG+TGG 0.526248 6_2:+78754749 None:intergenic
TGATGACTGGTTCTTGTATG+GGG 0.527054 6_2:+78754833 None:intergenic
AATGGTGCTGATTTAGGGTC+TGG 0.527304 6_2:-78754018 Msa0929940:CDS
ATGGGAAAGGTTGAAAGCAC+AGG 0.529021 6_2:-78754210 Msa0929940:CDS
TGATGAGGAACCAAAGATAG+TGG 0.529530 6_2:+78754868 None:intergenic
CACAACAAGAGTCTAATACA+AGG 0.533136 6_2:-78754523 Msa0929940:intron
CCACAACAACCGCAACCCTC+AGG 0.533605 6_2:-78754782 Msa0929940:CDS
TTGGTTCTTAAAGATAGCTA+TGG 0.533782 6_2:-78753700 Msa0929940:three_prime_UTR
TTTAATCAAAATCATCAAGC+AGG 0.537963 6_2:+78753931 None:intergenic
CTATGAAGGCAGGAGGGAAG+AGG 0.543711 6_2:-78754077 Msa0929940:CDS
TATAGTAAGGGTGTGTGTGA+AGG 0.554244 6_2:-78754120 Msa0929940:CDS
ATAGTAAGGGTGTGTGTGAA+GGG 0.556262 6_2:-78754119 Msa0929940:CDS
AAATCATCAAGCAGGTGCAA+TGG 0.556694 6_2:+78753939 None:intergenic
TTGCCACTTCCTTGACCAGA+CGG 0.563085 6_2:-78754631 Msa0929940:CDS
GATGATGGACCTGAGGGTTG+CGG 0.566646 6_2:+78754773 None:intergenic
TGGCTCTAGTTATGGGGTCA+AGG 0.567583 6_2:-78754146 Msa0929940:CDS
TGAAGGAGACAAGAAACCAT+TGG 0.568456 6_2:-78754166 Msa0929940:CDS
CTAAGGTTGATTCCACAGAC+TGG 0.569193 6_2:-78754655 Msa0929940:CDS
AAGGCCAAACCGTCTGGTCA+AGG 0.575540 6_2:+78754622 None:intergenic
TTGTATTTATAGGAATGTTG+AGG 0.575987 6_2:-78754413 Msa0929940:intron
TACTATGAATTGAAAATCGG+TGG 0.577492 6_2:-78754276 Msa0929940:CDS
GACCCCATAACTAGAGCCAA+TGG 0.581524 6_2:+78754150 None:intergenic
ACTCTTGTTGTGAAACCTCA+AGG 0.583436 6_2:+78754534 None:intergenic
TATTTATAGGAATGTTGAGG+AGG 0.585244 6_2:-78754410 Msa0929940:intron
TATCATTATTATCCTAAACA+TGG 0.586973 6_2:-78754891 Msa0929940:exon
TGTGATTGATATAATGGGAA+AGG 0.597131 6_2:-78754223 Msa0929940:CDS
ACAACCAAATCACCTCGCCT+TGG 0.600709 6_2:+78754243 None:intergenic
GTATGAACTGCATTGAACAT+TGG 0.609000 6_2:-78753752 Msa0929940:three_prime_UTR
TATTCAAGTGTTGCAAGTGG+AGG 0.610335 6_2:+78753985 None:intergenic
CCCATGCAAGACCAGCTCCA+AGG 0.610919 6_2:+78754603 None:intergenic
TATCTTTAAGAACCAACAAG+AGG 0.616145 6_2:+78753707 None:intergenic
GGAAGTGGCAATCCAGTCTG+TGG 0.620097 6_2:+78754643 None:intergenic
GGGTCAAGGCCATATAGTAA+GGG 0.620171 6_2:-78754132 Msa0929940:CDS
TCGGTGGTGGTGATATGCCA+AGG 0.624769 6_2:-78754260 Msa0929940:CDS
TGAAGAAGTGATGTGATGAC+TGG 0.628381 6_2:+78754820 None:intergenic
AACCATTGGCTCTAGTTATG+GGG 0.638329 6_2:-78754152 Msa0929940:CDS
CTGTGGAGATGATGGACCTG+AGG 0.638664 6_2:+78754766 None:intergenic
ACGTATTCAAGTGTTGCAAG+TGG 0.645589 6_2:+78753982 None:intergenic
TATGAATTGAAAATCGGTGG+TGG 0.648406 6_2:-78754273 Msa0929940:CDS
GGGGAGTAAGAAAATTGATG+AGG 0.664361 6_2:+78754853 None:intergenic
TCTCTAAATCCCAATTCAGG+AGG 0.664404 6_2:+78754042 None:intergenic
TGCTGATTTAGGGTCTGGTG+TGG 0.665665 6_2:-78754013 Msa0929940:CDS
TGTGGAGATGATGGACCTGA+GGG 0.675679 6_2:+78754767 None:intergenic
GATGACTGGTTCTTGTATGG+GGG 0.683084 6_2:+78754834 None:intergenic
GGTGGTGATATGCCAAGGCG+AGG 0.718124 6_2:-78754255 Msa0929940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGATATTTTTGTATTTAT+AGG - chr6_2:78754137-78754156 Msa0929940:CDS 10.0%
!!! AATGATATTTTTGTATTTAT+AGG - chr6_2:78754137-78754156 Msa0929940:CDS 10.0%
!! TAATGATAATAAGTTTGATT+TGG + chr6_2:78753657-78753676 None:intergenic 15.0%
!! TTATCAAAATCATATATGAA+TGG - chr6_2:78754098-78754117 Msa0929940:CDS 15.0%
!! TAATGATAATAAGTTTGATT+TGG + chr6_2:78753657-78753676 None:intergenic 15.0%
!! TTATCAAAATCATATATGAA+TGG - chr6_2:78754098-78754117 Msa0929940:CDS 15.0%
!! TATCATTATTATCCTAAACA+TGG - chr6_2:78753669-78753688 Msa0929940:three_prime_UTR 20.0%
!! ATATGTACTAAAAACTATGA+AGG - chr6_2:78754469-78754488 Msa0929940:intron 20.0%
!!! ATTTCATTCATCATTTTGTA+TGG - chr6_2:78754714-78754733 Msa0929940:CDS 20.0%
!!! TTCATACAATTAGCTTTAAT+TGG + chr6_2:78754795-78754814 None:intergenic 20.0%
!! TATCATTATTATCCTAAACA+TGG - chr6_2:78753669-78753688 Msa0929940:three_prime_UTR 20.0%
!! ATATGTACTAAAAACTATGA+AGG - chr6_2:78754469-78754488 Msa0929940:intron 20.0%
!!! ATTTCATTCATCATTTTGTA+TGG - chr6_2:78754714-78754733 Msa0929940:CDS 20.0%
!!! TTCATACAATTAGCTTTAAT+TGG + chr6_2:78754795-78754814 None:intergenic 20.0%
! TTGTATTTATAGGAATGTTG+AGG - chr6_2:78754147-78754166 Msa0929940:CDS 25.0%
! ATAATTAACCTTATGCCATT+AGG + chr6_2:78754193-78754212 None:intergenic 25.0%
! AGGTACTATGAATTGAAAAT+CGG - chr6_2:78754281-78754300 Msa0929940:intron 25.0%
! TTTGGTTGTGATTGATATAA+TGG - chr6_2:78754331-78754350 Msa0929940:intron 25.0%
! TTGGTTGTGATTGATATAAT+GGG - chr6_2:78754332-78754351 Msa0929940:intron 25.0%
! TTTAATCAAAATCATCAAGC+AGG + chr6_2:78754632-78754651 None:intergenic 25.0%
!! ATTCATCATTTTGTATGGAA+TGG - chr6_2:78754719-78754738 Msa0929940:CDS 25.0%
!!! GTATGGAATGGATTAAATAT+AGG - chr6_2:78754731-78754750 Msa0929940:CDS 25.0%
! ATACATGTCAGTGTAAAATA+TGG - chr6_2:78754765-78754784 Msa0929940:CDS 25.0%
!! TTTTTAAATTTAGCTGCAGA+AGG + chr6_2:78754900-78754919 None:intergenic 25.0%
! TTGTATTTATAGGAATGTTG+AGG - chr6_2:78754147-78754166 Msa0929940:CDS 25.0%
! ATAATTAACCTTATGCCATT+AGG + chr6_2:78754193-78754212 None:intergenic 25.0%
! AGGTACTATGAATTGAAAAT+CGG - chr6_2:78754281-78754300 Msa0929940:intron 25.0%
! TTTGGTTGTGATTGATATAA+TGG - chr6_2:78754331-78754350 Msa0929940:intron 25.0%
! TTGGTTGTGATTGATATAAT+GGG - chr6_2:78754332-78754351 Msa0929940:intron 25.0%
! TTTAATCAAAATCATCAAGC+AGG + chr6_2:78754632-78754651 None:intergenic 25.0%
!! ATTCATCATTTTGTATGGAA+TGG - chr6_2:78754719-78754738 Msa0929940:CDS 25.0%
!!! GTATGGAATGGATTAAATAT+AGG - chr6_2:78754731-78754750 Msa0929940:CDS 25.0%
! ATACATGTCAGTGTAAAATA+TGG - chr6_2:78754765-78754784 Msa0929940:CDS 25.0%
!! TTTTTAAATTTAGCTGCAGA+AGG + chr6_2:78754900-78754919 None:intergenic 25.0%
!! TTCAAATTTGTTGTTGACTG+TGG + chr6_2:78753814-78753833 None:intergenic 30.0%
! GATGAAACAACTGGTTTAAT+AGG + chr6_2:78753883-78753902 None:intergenic 30.0%
TATTTATAGGAATGTTGAGG+AGG - chr6_2:78754150-78754169 Msa0929940:CDS 30.0%
TACTATGAATTGAAAATCGG+TGG - chr6_2:78754284-78754303 Msa0929940:intron 30.0%
! TGTGATTGATATAATGGGAA+AGG - chr6_2:78754337-78754356 Msa0929940:intron 30.0%
! TATCTTTAAGAACCAACAAG+AGG + chr6_2:78754856-78754875 None:intergenic 30.0%
! TTGGTTCTTAAAGATAGCTA+TGG - chr6_2:78754860-78754879 Msa0929940:CDS 30.0%
!! TTCAAATTTGTTGTTGACTG+TGG + chr6_2:78753814-78753833 None:intergenic 30.0%
! GATGAAACAACTGGTTTAAT+AGG + chr6_2:78753883-78753902 None:intergenic 30.0%
TATTTATAGGAATGTTGAGG+AGG - chr6_2:78754150-78754169 Msa0929940:CDS 30.0%
TACTATGAATTGAAAATCGG+TGG - chr6_2:78754284-78754303 Msa0929940:intron 30.0%
! TGTGATTGATATAATGGGAA+AGG - chr6_2:78754337-78754356 Msa0929940:intron 30.0%
! TATCTTTAAGAACCAACAAG+AGG + chr6_2:78754856-78754875 None:intergenic 30.0%
! TTGGTTCTTAAAGATAGCTA+TGG - chr6_2:78754860-78754879 Msa0929940:CDS 30.0%
! ACCAGTTGTTTCATCAACTA+AGG - chr6_2:78753888-78753907 Msa0929940:three_prime_UTR 35.0%
!! ACCTTAGTTGATGAAACAAC+TGG + chr6_2:78753892-78753911 None:intergenic 35.0%
ACAAATAAAAACTCGCCTTG+AGG - chr6_2:78754011-78754030 Msa0929940:CDS 35.0%
CACAACAAGAGTCTAATACA+AGG - chr6_2:78754037-78754056 Msa0929940:CDS 35.0%
AAAGAGATGATTCTGCCTAA+TGG - chr6_2:78754175-78754194 Msa0929940:CDS 35.0%
TATGAATTGAAAATCGGTGG+TGG - chr6_2:78754287-78754306 Msa0929940:intron 35.0%
GTGTTTGTGAACACATTTGA+AGG - chr6_2:78754377-78754396 Msa0929940:intron 35.0%
!! AAACCATTGGCTCTAGTTAT+GGG - chr6_2:78754407-78754426 Msa0929940:intron 35.0%
GTACTAAAAACTATGAAGGC+AGG - chr6_2:78754473-78754492 Msa0929940:intron 35.0%
TAAAAACTATGAAGGCAGGA+GGG - chr6_2:78754477-78754496 Msa0929940:intron 35.0%
TTCTCTCTAAATCCCAATTC+AGG + chr6_2:78754524-78754543 None:intergenic 35.0%
GAATTGGGATTTAGAGAGAA+TGG - chr6_2:78754524-78754543 Msa0929940:CDS 35.0%
AACACTTGAATACGTTGTAC+AGG - chr6_2:78754586-78754605 Msa0929940:CDS 35.0%
GTATGAACTGCATTGAACAT+TGG - chr6_2:78754808-78754827 Msa0929940:CDS 35.0%
! ACCAGTTGTTTCATCAACTA+AGG - chr6_2:78753888-78753907 Msa0929940:three_prime_UTR 35.0%
!! ACCTTAGTTGATGAAACAAC+TGG + chr6_2:78753892-78753911 None:intergenic 35.0%
ACAAATAAAAACTCGCCTTG+AGG - chr6_2:78754011-78754030 Msa0929940:CDS 35.0%
CACAACAAGAGTCTAATACA+AGG - chr6_2:78754037-78754056 Msa0929940:CDS 35.0%
AAAGAGATGATTCTGCCTAA+TGG - chr6_2:78754175-78754194 Msa0929940:CDS 35.0%
TATGAATTGAAAATCGGTGG+TGG - chr6_2:78754287-78754306 Msa0929940:intron 35.0%
GTGTTTGTGAACACATTTGA+AGG - chr6_2:78754377-78754396 Msa0929940:intron 35.0%
!! AAACCATTGGCTCTAGTTAT+GGG - chr6_2:78754407-78754426 Msa0929940:intron 35.0%
GTACTAAAAACTATGAAGGC+AGG - chr6_2:78754473-78754492 Msa0929940:intron 35.0%
TAAAAACTATGAAGGCAGGA+GGG - chr6_2:78754477-78754496 Msa0929940:intron 35.0%
TTCTCTCTAAATCCCAATTC+AGG + chr6_2:78754524-78754543 None:intergenic 35.0%
GAATTGGGATTTAGAGAGAA+TGG - chr6_2:78754524-78754543 Msa0929940:CDS 35.0%
AACACTTGAATACGTTGTAC+AGG - chr6_2:78754586-78754605 Msa0929940:CDS 35.0%
GTATGAACTGCATTGAACAT+TGG - chr6_2:78754808-78754827 Msa0929940:CDS 35.0%
! CAAAGATAGTGGCCATGTTT+AGG + chr6_2:78753684-78753703 None:intergenic 40.0%
CTAAACATGGCCACTATCTT+TGG - chr6_2:78753682-78753701 Msa0929940:three_prime_UTR 40.0%
TGATGAGGAACCAAAGATAG+TGG + chr6_2:78753695-78753714 None:intergenic 40.0%
GGGGAGTAAGAAAATTGATG+AGG + chr6_2:78753710-78753729 None:intergenic 40.0%
! TGATGACTGGTTCTTGTATG+GGG + chr6_2:78753730-78753749 None:intergenic 40.0%
! GTGATGACTGGTTCTTGTAT+GGG + chr6_2:78753731-78753750 None:intergenic 40.0%
! TGTGATGACTGGTTCTTGTA+TGG + chr6_2:78753732-78753751 None:intergenic 40.0%
TGAAGAAGTGATGTGATGAC+TGG + chr6_2:78753743-78753762 None:intergenic 40.0%
!!! TGGGTTGGTTTTCTTGCATT+TGG - chr6_2:78753976-78753995 Msa0929940:CDS 40.0%
! ACTCTTGTTGTGAAACCTCA+AGG + chr6_2:78754029-78754048 None:intergenic 40.0%
TGATTCTGCCTAATGGCATA+AGG - chr6_2:78754182-78754201 Msa0929940:CDS 40.0%
!! CGACTCATTTTTGTCTCTAC+AGG - chr6_2:78754261-78754280 Msa0929940:CDS 40.0%
TGAAGGAGACAAGAAACCAT+TGG - chr6_2:78754394-78754413 Msa0929940:CDS 40.0%
!! GAAACCATTGGCTCTAGTTA+TGG - chr6_2:78754406-78754425 Msa0929940:intron 40.0%
!! AACCATTGGCTCTAGTTATG+GGG - chr6_2:78754408-78754427 Msa0929940:intron 40.0%
TCACACACACCCTTACTATA+TGG + chr6_2:78754440-78754459 None:intergenic 40.0%
! TATAGTAAGGGTGTGTGTGA+AGG - chr6_2:78754440-78754459 Msa0929940:intron 40.0%
! ATAGTAAGGGTGTGTGTGAA+GGG - chr6_2:78754441-78754460 Msa0929940:intron 40.0%
CTAAAAACTATGAAGGCAGG+AGG - chr6_2:78754476-78754495 Msa0929940:intron 40.0%
AGTTATTGTGCCTCCTGAAT+TGG - chr6_2:78754508-78754527 Msa0929940:intron 40.0%
GTTATTGTGCCTCCTGAATT+GGG - chr6_2:78754509-78754528 Msa0929940:intron 40.0%
TCTCTAAATCCCAATTCAGG+AGG + chr6_2:78754521-78754540 None:intergenic 40.0%
!! AGAGAGAATGGTGCTGATTT+AGG - chr6_2:78754536-78754555 Msa0929940:CDS 40.0%
!! GAGAGAATGGTGCTGATTTA+GGG - chr6_2:78754537-78754556 Msa0929940:CDS 40.0%
! TATTCAAGTGTTGCAAGTGG+AGG + chr6_2:78754578-78754597 None:intergenic 40.0%
! ACGTATTCAAGTGTTGCAAG+TGG + chr6_2:78754581-78754600 None:intergenic 40.0%
AAATCATCAAGCAGGTGCAA+TGG + chr6_2:78754624-78754643 None:intergenic 40.0%
! CAAAGATAGTGGCCATGTTT+AGG + chr6_2:78753684-78753703 None:intergenic 40.0%
CTAAACATGGCCACTATCTT+TGG - chr6_2:78753682-78753701 Msa0929940:three_prime_UTR 40.0%
TGATGAGGAACCAAAGATAG+TGG + chr6_2:78753695-78753714 None:intergenic 40.0%
GGGGAGTAAGAAAATTGATG+AGG + chr6_2:78753710-78753729 None:intergenic 40.0%
! TGATGACTGGTTCTTGTATG+GGG + chr6_2:78753730-78753749 None:intergenic 40.0%
! GTGATGACTGGTTCTTGTAT+GGG + chr6_2:78753731-78753750 None:intergenic 40.0%
! TGTGATGACTGGTTCTTGTA+TGG + chr6_2:78753732-78753751 None:intergenic 40.0%
TGAAGAAGTGATGTGATGAC+TGG + chr6_2:78753743-78753762 None:intergenic 40.0%
!!! TGGGTTGGTTTTCTTGCATT+TGG - chr6_2:78753976-78753995 Msa0929940:CDS 40.0%
! ACTCTTGTTGTGAAACCTCA+AGG + chr6_2:78754029-78754048 None:intergenic 40.0%
TGATTCTGCCTAATGGCATA+AGG - chr6_2:78754182-78754201 Msa0929940:CDS 40.0%
!! CGACTCATTTTTGTCTCTAC+AGG - chr6_2:78754261-78754280 Msa0929940:CDS 40.0%
TGAAGGAGACAAGAAACCAT+TGG - chr6_2:78754394-78754413 Msa0929940:CDS 40.0%
!! GAAACCATTGGCTCTAGTTA+TGG - chr6_2:78754406-78754425 Msa0929940:intron 40.0%
!! AACCATTGGCTCTAGTTATG+GGG - chr6_2:78754408-78754427 Msa0929940:intron 40.0%
TCACACACACCCTTACTATA+TGG + chr6_2:78754440-78754459 None:intergenic 40.0%
! TATAGTAAGGGTGTGTGTGA+AGG - chr6_2:78754440-78754459 Msa0929940:intron 40.0%
! ATAGTAAGGGTGTGTGTGAA+GGG - chr6_2:78754441-78754460 Msa0929940:intron 40.0%
CTAAAAACTATGAAGGCAGG+AGG - chr6_2:78754476-78754495 Msa0929940:intron 40.0%
AGTTATTGTGCCTCCTGAAT+TGG - chr6_2:78754508-78754527 Msa0929940:intron 40.0%
GTTATTGTGCCTCCTGAATT+GGG - chr6_2:78754509-78754528 Msa0929940:intron 40.0%
TCTCTAAATCCCAATTCAGG+AGG + chr6_2:78754521-78754540 None:intergenic 40.0%
!! AGAGAGAATGGTGCTGATTT+AGG - chr6_2:78754536-78754555 Msa0929940:CDS 40.0%
!! GAGAGAATGGTGCTGATTTA+GGG - chr6_2:78754537-78754556 Msa0929940:CDS 40.0%
! TATTCAAGTGTTGCAAGTGG+AGG + chr6_2:78754578-78754597 None:intergenic 40.0%
! ACGTATTCAAGTGTTGCAAG+TGG + chr6_2:78754581-78754600 None:intergenic 40.0%
AAATCATCAAGCAGGTGCAA+TGG + chr6_2:78754624-78754643 None:intergenic 40.0%
! GATGACTGGTTCTTGTATGG+GGG + chr6_2:78753729-78753748 None:intergenic 45.0%
! GTTGTTGACTGTGGAGATGA+TGG + chr6_2:78753805-78753824 None:intergenic 45.0%
AGGAATCTGTTGCTGTGCTT+TGG + chr6_2:78753863-78753882 None:intergenic 45.0%
! CTAAGGTTGATTCCACAGAC+TGG - chr6_2:78753905-78753924 Msa0929940:three_prime_UTR 45.0%
! ATGGGAAAGGTTGAAAGCAC+AGG - chr6_2:78754350-78754369 Msa0929940:intron 45.0%
GGGTCAAGGCCATATAGTAA+GGG - chr6_2:78754428-78754447 Msa0929940:intron 45.0%
!! AATGGTGCTGATTTAGGGTC+TGG - chr6_2:78754542-78754561 Msa0929940:CDS 45.0%
! GCATGTACACTAGAGTGCTT+TGG - chr6_2:78754657-78754676 Msa0929940:CDS 45.0%
ATGCATCATGTGCCTCTTGT+TGG - chr6_2:78754841-78754860 Msa0929940:CDS 45.0%
! GATGACTGGTTCTTGTATGG+GGG + chr6_2:78753729-78753748 None:intergenic 45.0%
! GTTGTTGACTGTGGAGATGA+TGG + chr6_2:78753805-78753824 None:intergenic 45.0%
AGGAATCTGTTGCTGTGCTT+TGG + chr6_2:78753863-78753882 None:intergenic 45.0%
! CTAAGGTTGATTCCACAGAC+TGG - chr6_2:78753905-78753924 Msa0929940:three_prime_UTR 45.0%
! ATGGGAAAGGTTGAAAGCAC+AGG - chr6_2:78754350-78754369 Msa0929940:intron 45.0%
GGGTCAAGGCCATATAGTAA+GGG - chr6_2:78754428-78754447 Msa0929940:intron 45.0%
!! AATGGTGCTGATTTAGGGTC+TGG - chr6_2:78754542-78754561 Msa0929940:CDS 45.0%
! GCATGTACACTAGAGTGCTT+TGG - chr6_2:78754657-78754676 Msa0929940:CDS 45.0%
ATGCATCATGTGCCTCTTGT+TGG - chr6_2:78754841-78754860 Msa0929940:CDS 45.0%
!! TGTGGAGATGATGGACCTGA+GGG + chr6_2:78753796-78753815 None:intergenic 50.0%
! TTGCCACTTCCTTGACCAGA+CGG - chr6_2:78753929-78753948 Msa0929940:exon 50.0%
AAACCGTCTGGTCAAGGAAG+TGG + chr6_2:78753935-78753954 None:intergenic 50.0%
ACTTCCTTGACCAGACGGTT+TGG - chr6_2:78753934-78753953 Msa0929940:exon 50.0%
TATGCCAAGGCGAGGTGATT+TGG - chr6_2:78754313-78754332 Msa0929940:intron 50.0%
ACAACCAAATCACCTCGCCT+TGG + chr6_2:78754320-78754339 None:intergenic 50.0%
GACCCCATAACTAGAGCCAA+TGG + chr6_2:78754413-78754432 None:intergenic 50.0%
!! TGGCTCTAGTTATGGGGTCA+AGG - chr6_2:78754414-78754433 Msa0929940:intron 50.0%
GGGGTCAAGGCCATATAGTA+AGG - chr6_2:78754427-78754446 Msa0929940:intron 50.0%
!! TGCTGATTTAGGGTCTGGTG+TGG - chr6_2:78754547-78754566 Msa0929940:CDS 50.0%
!! TGTGGAGATGATGGACCTGA+GGG + chr6_2:78753796-78753815 None:intergenic 50.0%
! TTGCCACTTCCTTGACCAGA+CGG - chr6_2:78753929-78753948 Msa0929940:exon 50.0%
AAACCGTCTGGTCAAGGAAG+TGG + chr6_2:78753935-78753954 None:intergenic 50.0%
ACTTCCTTGACCAGACGGTT+TGG - chr6_2:78753934-78753953 Msa0929940:exon 50.0%
TATGCCAAGGCGAGGTGATT+TGG - chr6_2:78754313-78754332 Msa0929940:intron 50.0%
ACAACCAAATCACCTCGCCT+TGG + chr6_2:78754320-78754339 None:intergenic 50.0%
GACCCCATAACTAGAGCCAA+TGG + chr6_2:78754413-78754432 None:intergenic 50.0%
!! TGGCTCTAGTTATGGGGTCA+AGG - chr6_2:78754414-78754433 Msa0929940:intron 50.0%
GGGGTCAAGGCCATATAGTA+AGG - chr6_2:78754427-78754446 Msa0929940:intron 50.0%
!! TGCTGATTTAGGGTCTGGTG+TGG - chr6_2:78754547-78754566 Msa0929940:CDS 50.0%
!! GATGATGGACCTGAGGGTTG+CGG + chr6_2:78753790-78753809 None:intergenic 55.0%
!! CTGTGGAGATGATGGACCTG+AGG + chr6_2:78753797-78753816 None:intergenic 55.0%
GGAAGTGGCAATCCAGTCTG+TGG + chr6_2:78753920-78753939 None:intergenic 55.0%
AAGGCCAAACCGTCTGGTCA+AGG + chr6_2:78753941-78753960 None:intergenic 55.0%
! TTGACCAGACGGTTTGGCCT+TGG - chr6_2:78753940-78753959 Msa0929940:exon 55.0%
!! CCTTGGAGCTGGTCTTGCAT+GGG - chr6_2:78753957-78753976 Msa0929940:CDS 55.0%
! TCGGTGGTGGTGATATGCCA+AGG - chr6_2:78754300-78754319 Msa0929940:intron 55.0%
CTATGAAGGCAGGAGGGAAG+AGG - chr6_2:78754483-78754502 Msa0929940:intron 55.0%
!! GATGATGGACCTGAGGGTTG+CGG + chr6_2:78753790-78753809 None:intergenic 55.0%
!! CTGTGGAGATGATGGACCTG+AGG + chr6_2:78753797-78753816 None:intergenic 55.0%
GGAAGTGGCAATCCAGTCTG+TGG + chr6_2:78753920-78753939 None:intergenic 55.0%
AAGGCCAAACCGTCTGGTCA+AGG + chr6_2:78753941-78753960 None:intergenic 55.0%
! TTGACCAGACGGTTTGGCCT+TGG - chr6_2:78753940-78753959 Msa0929940:exon 55.0%
!! CCTTGGAGCTGGTCTTGCAT+GGG - chr6_2:78753957-78753976 Msa0929940:CDS 55.0%
! TCGGTGGTGGTGATATGCCA+AGG - chr6_2:78754300-78754319 Msa0929940:intron 55.0%
CTATGAAGGCAGGAGGGAAG+AGG - chr6_2:78754483-78754502 Msa0929940:intron 55.0%
GGTTGCGGTTGTTGTGGTGG+AGG + chr6_2:78753775-78753794 None:intergenic 60.0%
GAGGGTTGCGGTTGTTGTGG+TGG + chr6_2:78753778-78753797 None:intergenic 60.0%
CCTGAGGGTTGCGGTTGTTG+TGG + chr6_2:78753781-78753800 None:intergenic 60.0%
CCACAACAACCGCAACCCTC+AGG - chr6_2:78753778-78753797 Msa0929940:three_prime_UTR 60.0%
AGCTCCAAGGCCAAACCGTC+TGG + chr6_2:78753947-78753966 None:intergenic 60.0%
!! AGACGGTTTGGCCTTGGAGC+TGG - chr6_2:78753946-78753965 Msa0929940:CDS 60.0%
!! GCCTTGGAGCTGGTCTTGCA+TGG - chr6_2:78753956-78753975 Msa0929940:CDS 60.0%
CCCATGCAAGACCAGCTCCA+AGG + chr6_2:78753960-78753979 None:intergenic 60.0%
!! GGAGCTGGTCTTGCATGGGT+TGG - chr6_2:78753961-78753980 Msa0929940:CDS 60.0%
GGTGGTGATATGCCAAGGCG+AGG - chr6_2:78754305-78754324 Msa0929940:intron 60.0%
GGTTGCGGTTGTTGTGGTGG+AGG + chr6_2:78753775-78753794 None:intergenic 60.0%
GAGGGTTGCGGTTGTTGTGG+TGG + chr6_2:78753778-78753797 None:intergenic 60.0%
CCTGAGGGTTGCGGTTGTTG+TGG + chr6_2:78753781-78753800 None:intergenic 60.0%
CCACAACAACCGCAACCCTC+AGG - chr6_2:78753778-78753797 Msa0929940:three_prime_UTR 60.0%
AGCTCCAAGGCCAAACCGTC+TGG + chr6_2:78753947-78753966 None:intergenic 60.0%
!! AGACGGTTTGGCCTTGGAGC+TGG - chr6_2:78753946-78753965 Msa0929940:CDS 60.0%
!! GCCTTGGAGCTGGTCTTGCA+TGG - chr6_2:78753956-78753975 Msa0929940:CDS 60.0%
CCCATGCAAGACCAGCTCCA+AGG + chr6_2:78753960-78753979 None:intergenic 60.0%
!! GGAGCTGGTCTTGCATGGGT+TGG - chr6_2:78753961-78753980 Msa0929940:CDS 60.0%
GGTGGTGATATGCCAAGGCG+AGG - chr6_2:78754305-78754324 Msa0929940:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 78753650 78754932 78753650 ID=Msa0929940;Name=Msa0929940
chr6_2 mRNA 78753650 78754932 78753650 ID=Msa0929940-mRNA-1;Parent=Msa0929940;Name=Msa0929940-mRNA-1;_AED=0.00;_eAED=0.00;_QI=38|1|1|1|1|1|3|295|256
chr6_2 exon 78753650 78754299 78753650 ID=Msa0929940-mRNA-1:exon:13322;Parent=Msa0929940-mRNA-1
chr6_2 exon 78754379 78754423 78754379 ID=Msa0929940-mRNA-1:exon:13321;Parent=Msa0929940-mRNA-1
chr6_2 exon 78754524 78754932 78754524 ID=Msa0929940-mRNA-1:exon:13320;Parent=Msa0929940-mRNA-1
chr6_2 five_prime_UTR 78754895 78754932 78754895 ID=Msa0929940-mRNA-1:five_prime_utr;Parent=Msa0929940-mRNA-1
chr6_2 CDS 78754524 78754894 78754524 ID=Msa0929940-mRNA-1:cds;Parent=Msa0929940-mRNA-1
chr6_2 CDS 78754379 78754423 78754379 ID=Msa0929940-mRNA-1:cds;Parent=Msa0929940-mRNA-1
chr6_2 CDS 78753945 78754299 78753945 ID=Msa0929940-mRNA-1:cds;Parent=Msa0929940-mRNA-1
chr6_2 three_prime_UTR 78753650 78753944 78753650 ID=Msa0929940-mRNA-1:three_prime_utr;Parent=Msa0929940-mRNA-1
Gene Sequence

>Msa0929940

ATGGCCACTATCTTTGGTTCCTCATCAATTTTCTTACTCCCCCATACAAGAACCAGTCATCACATCACTTCTTCATCAGCAACTCCTCCACCACAACAACCGCAACCCTCAGGTCCATCATCTCCACAGTCAACAACAAATTTGAATGAAGATCAGTCAGTGCAAGTCTCTGCCAAAGCACAGCAACAGATTCCTATTAAACCAGTTGTTTCATCAACTAAGGTTGATTCCACAGACTGGATTGCCACTTCCTTGACCAGACGGTTTGGCCTTGGAGCTGGTCTTGCATGGGTTGGTTTTCTTGCATTTGGTGTTGTCTCAGAACAAATAAAAACTCGCCTTGAGGTTTCACAACAAGAGTCTAATACAAGGAATGTTGAGGAGGAGAAAGAGATGATTCTGCCTAATGGCATAAGGTACTATGAATTGAAAATCGGTGGTGGTGATATGCCAAGGCGAGGTGATTTGGTTGTGATTGATATAATGGGAAAGGTTGAAAGCACAGGAGAAGTGTTTGTGAACACATTTGAAGGAGACAAGAAACCATTGGCTCTAGTTATGGGGTCAAGGCCATATAGTAAGGGTGTGTGTGAAGGGATTGAATATGTACTAAAAACTATGAAGGCAGGAGGGAAGAGGAAAGTTATTGTGCCTCCTGAATTGGGATTTAGAGAGAATGGTGCTGATTTAGGGTCTGGTGTGGAAATTCCTCCACTTGCAACACTTGAATACGTTGTACAGGTTGATAAAGTGTCCATTGCACCTGCTTGA

Protein sequence

>Msa0929940

MATIFGSSSIFLLPHTRTSHHITSSSATPPPQQPQPSGPSSPQSTTNLNEDQSVQVSAKAQQQIPIKPVVSSTKVDSTDWIATSLTRRFGLGAGLAWVGFLAFGVVSEQIKTRLEVSQQESNTRNVEEEKEMILPNGIRYYELKIGGGDMPRRGDLVVIDIMGKVESTGEVFVNTFEGDKKPLALVMGSRPYSKGVCEGIEYVLKTMKAGGKRKVIVPPELGFRENGADLGSGVEIPPLATLEYVVQVDKVSIAPA*