AlfalfaGEDB | Msa0416020

M. sativa cultivar zhongmu-4 / Msa0416020

KEGG: K12657
GO: GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004350 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009651 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010035 GO:0010154 GO:0016020 GO:0016053 GO:0016491 GO:0016620 GO:0016903 GO:0017084 GO:0018130 GO:0019752 GO:0022414 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0048229 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055044 GO:0055114 GO:0061458 GO:0071704 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700
PFAM: PF00696.31

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0416020	ABY76166.1	99.025	718	4	1	1	718	1	715	0.0	1433

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0416020	sp\|O04015\|P5CS_ACTDE	78.691	718	150	1	1	718	1	715	0.0	1117

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0416020	B0LSX0	99.025	718	4	1	1	718	1	715	0.0	1433

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0035730	Msa0416020	0.805173	1.516647e-49	-8.615850e-47
Msa0124910	Msa0416020	0.816280	5.998022e-52	-8.615850e-47
Msa0169410	Msa0416020	0.813567	2.397567e-51	-8.615850e-47
Msa0195230	Msa0416020	0.810333	1.214386e-50	-8.615850e-47
Msa0195260	Msa0416020	0.804704	1.901420e-49	-8.615850e-47
Msa0218040	Msa0416020	0.805668	1.194346e-49	-8.615850e-47
Msa0231630	Msa0416020	0.814119	1.811804e-51	-8.615850e-47
Msa0268110	Msa0416020	0.800268	1.560951e-48	-8.615850e-47
Msa0301520	Msa0416020	0.803333	3.664551e-49	-8.615850e-47
Msa0368640	Msa0416020	0.883728	3.508738e-71	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0416020	MtrunA17_Chr3g0112411	97.354	718	16	1	1	718	1	715	0.0	1410
Msa0416020	MtrunA17_Chr4g0008951	75.664	715	170	2	1	715	41	751	0.0	1098
Msa0416020	MtrunA17_Chr7g0239721	74.266	715	178	2	5	716	2	713	0.0	1067
Msa0416020	MtrunA17_Chr4g0053671	47.619	105	52	2	564	667	46	148	4.91e-20	87.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0416020	AT3G55610.1	75.140	716	175	1	1	716	1	713	1078
Msa0416020	AT2G39800.1	74.860	716	177	1	1	716	1	713	1066
Msa0416020	AT2G39800.4	74.860	716	177	1	1	716	1	713	1066
Msa0416020	AT2G39800.3	74.441	716	177	2	1	716	1	710	1053
Msa0416020	AT3G55610.2	73.718	624	161	1	1	624	1	621	912
Msa0416020	AT2G39800.2	74.715	613	152	1	104	716	1	610	907

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Find 170 sgRNAs with CRISPR-Local

Find 355 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCCTTGGTTGCTAGGC+TGG	0.395053	3_2:+62586886	Msa0416020:CDS
AAACTGAACTTTGTGCAAAA+TGG	0.325995	3_2:-62587955	None:intergenic
AAAGTTGCTTTCTAAAATCT+TGG	0.335431	3_2:-62585510	None:intergenic
AACAATCCATCAACTCCTAC+TGG	0.437800	3_2:-62589641	None:intergenic
AACATCATCCACGATTTCCA+AGG	0.613354	3_2:-62588996	None:intergenic
AAGCCACAAGTTGAACTTGA+TGG	0.417920	3_2:+62585221	Msa0416020:CDS
AAGTCTAGGGTTGGAAGAGG+GGG	0.539406	3_2:+62586114	Msa0416020:CDS
AATCACGTGAGAAAGAGATC+AGG	0.595752	3_2:+62586816	Msa0416020:CDS
AATCAGAAACAAACCTCGTA+TGG	0.504586	3_2:-62585613	None:intergenic
AATCATCATAAGTAGCCATA+AGG	0.493336	3_2:-62585274	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTTGACAAAATCTCTACAA+GGG	-	chr3_2:62584526-62584545	None:intergenic	30.0%
TCTTTGACAAAATCTCTACA+AGG	-	chr3_2:62584527-62584546	None:intergenic	30.0%
TCACAAAACTTCAATACCAA+TGG	+	chr3_2:62584632-62584651	Msa0416020:intron	30.0%
ATACCAATGGATAATGCAAA+TGG	+	chr3_2:62584645-62584664	Msa0416020:intron	30.0%
AGATTAGCAGTTGGAAAATT+AGG	+	chr3_2:62584734-62584753	Msa0416020:CDS	30.0%
GATTAGCAGTTGGAAAATTA+GGG	+	chr3_2:62584735-62584754	Msa0416020:CDS	30.0%
ATTAGCAGTTGGAAAATTAG+GGG	+	chr3_2:62584736-62584755	Msa0416020:CDS	30.0%
AATCATCATAAGTAGCCATA+AGG	-	chr3_2:62585277-62585296	None:intergenic	30.0%
GATGTAGATGGTCTTTATAA+TGG	+	chr3_2:62586012-62586031	Msa0416020:CDS	30.0%
ACTTATTCACACATACATCA+AGG	+	chr3_2:62586059-62586078	Msa0416020:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	62584423	62590636	62584423	ID=Msa0416020;Name=Msa0416020
chr3_2	mRNA	62584423	62590636	62584423	ID=Msa0416020-mRNA-1;Parent=Msa0416020;Name=Msa0416020-mRNA-1;_AED=0.13;_eAED=0.13;_QI=86\|0.94\|0.95\|1\|1\|1\|20\|355\|718
chr3_2	exon	62584423	62584568	62584423	ID=Msa0416020-mRNA-1:exon:13534;Parent=Msa0416020-mRNA-1
chr3_2	exon	62584701	62584772	62584701	ID=Msa0416020-mRNA-1:exon:13535;Parent=Msa0416020-mRNA-1
chr3_2	exon	62584875	62584978	62584875	ID=Msa0416020-mRNA-1:exon:13536;Parent=Msa0416020-mRNA-1
chr3_2	exon	62585205	62585307	62585205	ID=Msa0416020-mRNA-1:exon:13537;Parent=Msa0416020-mRNA-1
chr3_2	exon	62585460	62585621	62585460	ID=Msa0416020-mRNA-1:exon:13538;Parent=Msa0416020-mRNA-1
chr3_2	exon	62585925	62586202	62585925	ID=Msa0416020-mRNA-1:exon:13539;Parent=Msa0416020-mRNA-1
chr3_2	exon	62586499	62586649	62586499	ID=Msa0416020-mRNA-1:exon:13540;Parent=Msa0416020-mRNA-1
chr3_2	exon	62586761	62586941	62586761	ID=Msa0416020-mRNA-1:exon:13541;Parent=Msa0416020-mRNA-1
chr3_2	exon	62587046	62587116	62587046	ID=Msa0416020-mRNA-1:exon:13542;Parent=Msa0416020-mRNA-1
chr3_2	exon	62587464	62587553	62587464	ID=Msa0416020-mRNA-1:exon:13543;Parent=Msa0416020-mRNA-1
chr3_2	exon	62587882	62587968	62587882	ID=Msa0416020-mRNA-1:exon:13544;Parent=Msa0416020-mRNA-1
chr3_2	exon	62588068	62588154	62588068	ID=Msa0416020-mRNA-1:exon:13545;Parent=Msa0416020-mRNA-1
chr3_2	exon	62588261	62588357	62588261	ID=Msa0416020-mRNA-1:exon:13546;Parent=Msa0416020-mRNA-1
chr3_2	exon	62588476	62588579	62588476	ID=Msa0416020-mRNA-1:exon:13547;Parent=Msa0416020-mRNA-1
chr3_2	exon	62588667	62588742	62588667	ID=Msa0416020-mRNA-1:exon:13548;Parent=Msa0416020-mRNA-1
chr3_2	exon	62588903	62589053	62588903	ID=Msa0416020-mRNA-1:exon:13549;Parent=Msa0416020-mRNA-1
chr3_2	exon	62589147	62589215	62589147	ID=Msa0416020-mRNA-1:exon:13550;Parent=Msa0416020-mRNA-1
chr3_2	exon	62589446	62589512	62589446	ID=Msa0416020-mRNA-1:exon:13551;Parent=Msa0416020-mRNA-1
chr3_2	exon	62589605	62589675	62589605	ID=Msa0416020-mRNA-1:exon:13552;Parent=Msa0416020-mRNA-1
chr3_2	exon	62590206	62590636	62590206	ID=Msa0416020-mRNA-1:exon:13553;Parent=Msa0416020-mRNA-1
chr3_2	five_prime_UTR	62584423	62584508	62584423	ID=Msa0416020-mRNA-1:five_prime_utr;Parent=Msa0416020-mRNA-1
chr3_2	CDS	62584509	62584568	62584509	ID=Msa0416020-mRNA-1:cds;Parent=Msa0416020-mRNA-1
chr3_2	CDS	62584701	62584772	62584701	ID=Msa0416020-mRNA-1:cds;Parent=Msa0416020-mRNA-1
chr3_2	CDS	62584875	62584978	62584875	ID=Msa0416020-mRNA-1:cds;Parent=Msa0416020-mRNA-1
chr3_2	CDS	62585205	62585307	62585205	ID=Msa0416020-mRNA-1:cds;Parent=Msa0416020-mRNA-1
chr3_2	CDS	62585460	62585621	62585460	ID=Msa0416020-mRNA-1:cds;Parent=Msa0416020-mRNA-1
chr3_2	CDS	62585925	62586202	62585925	ID=Msa0416020-mRNA-1:cds;Parent=Msa0416020-mRNA-1
chr3_2	CDS	62586499	62586649	62586499	ID=Msa0416020-mRNA-1:cds;Parent=Msa0416020-mRNA-1
chr3_2	CDS	62586761	62586941	62586761	ID=Msa0416020-mRNA-1:cds;Parent=Msa0416020-mRNA-1
chr3_2	CDS	62587046	62587116	62587046	ID=Msa0416020-mRNA-1:cds;Parent=Msa0416020-mRNA-1
chr3_2	CDS	62587464	62587553	62587464	ID=Msa0416020-mRNA-1:cds;Parent=Msa0416020-mRNA-1
chr3_2	CDS	62587882	62587968	62587882	ID=Msa0416020-mRNA-1:cds;Parent=Msa0416020-mRNA-1
chr3_2	CDS	62588068	62588154	62588068	ID=Msa0416020-mRNA-1:cds;Parent=Msa0416020-mRNA-1
chr3_2	CDS	62588261	62588357	62588261	ID=Msa0416020-mRNA-1:cds;Parent=Msa0416020-mRNA-1
chr3_2	CDS	62588476	62588579	62588476	ID=Msa0416020-mRNA-1:cds;Parent=Msa0416020-mRNA-1
chr3_2	CDS	62588667	62588742	62588667	ID=Msa0416020-mRNA-1:cds;Parent=Msa0416020-mRNA-1
chr3_2	CDS	62588903	62589053	62588903	ID=Msa0416020-mRNA-1:cds;Parent=Msa0416020-mRNA-1
chr3_2	CDS	62589147	62589215	62589147	ID=Msa0416020-mRNA-1:cds;Parent=Msa0416020-mRNA-1
chr3_2	CDS	62589446	62589512	62589446	ID=Msa0416020-mRNA-1:cds;Parent=Msa0416020-mRNA-1
chr3_2	CDS	62589605	62589675	62589605	ID=Msa0416020-mRNA-1:cds;Parent=Msa0416020-mRNA-1
chr3_2	CDS	62590206	62590281	62590206	ID=Msa0416020-mRNA-1:cds;Parent=Msa0416020-mRNA-1
chr3_2	three_prime_UTR	62590282	62590636	62590282	ID=Msa0416020-mRNA-1:three_prime_utr;Parent=Msa0416020-mRNA-1

Gene Sequence

>Msa0416020

ATGGCGAACGCCGACCCTTGTAGAGATTTTGTCAAAGATGTTAAGCGCATAATCATCAAGGTTGGTACTGCTGTTGTTACTCGCCAAGATGGAAGATTAGCAGTTGGAAAATTAGGGGCACTATGTGAGCAGATTAAGGAGCTAAATATTCTTGGTTATGAAGTTATTTTGGTTTCATCAGGTGCTGTCGGCCTCGGTCGACAAAGGCTTAGATACAGAAAATTGATTCAAAGTAGTTTTGCTGACCTTCAGAAGCCACAAGTTGAACTTGATGGCAAGGCTTGTGCTGCTGTTGGACAAAGCAGCCTTATGGCTACTTATGATGATTTGTTTAGTCAGCTGGATGTGACATCTGCTCAGCTTCTTGTTACTGACAATGATTTTAGAGACCAAGATTTTAGAAAGCAACTTTCTGAAACTGTGAGATCACTTCTAGCACTAAAAGTTATTCCAATATTCAACGAGAACGACGCAGTCAGTACTAGGAAAGCTCCATACGAGGATTCTTCTGGCATATTTTGGGATAATGACAGTTTATCAGCTTTGTTGGCCTTGGAATTAAAAGCAGATCTTCTTATTTTGTTGAGTGATGTAGATGGTCTTTATAATGGCCCTCCAAGTGATCCACTATCAAAACTTATTCACACATACATCAAGGAGAAGCATCAAAATGAAATTACTTTTGGAGACAAGTCTAGGGTTGGAAGAGGGGGAATGACAGCCAAAGTAAAAGCTTCTGTTCATGCTGCTGATGCCGGAATTCCTGTTATCATTACCAGTGGTAATGCAGCTGAAAATCTCACTAAAATTCTCCAAGGACAGCGTATTGGTACCCTCTTCCATAAAGATGCACATAAGTGGGTCCCTTCAAAAGAGGTTGATGTACGCGAGATGGCTGTTGCCGCTAGGGACTGTTCCAGACGGCTTCAGGCCGTGTCTTCGGAAGAAAGGAAACAAATTTTGCTAAATATAGCTGATGCATTGCAATCACGTGAGAAAGAGATCAGGATTGAAAATGAAGCTGATGTTGTTGCTGCACAAGAAGCAGGATACGAAAAATCCTTGGTTGCTAGGCTGGTTTTAAAGAGTGAGAAGGCAAGAGACAGTTCACGCCTTGCCAACAACATACGAATTATTGCAAACATGGAAGATCCGATTGGTCGAGTTTTAAAACGAACTGAGCTTGCAGAGGGGTTAATTTTGGAGAAAACGTCATCTCCTTTGGGAGTTCTTTTAATTATTTTCGAGTCTCGCCCTGATGCATTGGTACAGATAGCTTCCTTGGCAATACGAAGTGGGAATGGGCTTCTCTTGAAAGGAGGCAAGGAGGCTAATCGATCAAATGCCATTTTGCACAAAGTAATTACTGAAGCCATACCTGATACTGTTGGTTCAAAACTTATTGGACTTGTGACATCAAGAGCTGAAATACCTGAGCTACTTAAGCTGGATGATGTAATTGATCTGGTGATTCCAAGAGGCAGCAATAAACTTGTTTCTGATATTAAGAGTTCGACGAAAATCCCTGTTCTAGGTCATGCTGATGGGATTTGTCACGTCTATGTTGATAAATCTGCTAATTTGGAGATGGCTAAGCAGATTGTACTCGATGCAAAAACAGATTATCCATCAGGATGCAATGCCATGGAAACACTTCTTGTTCATAAGGATTTGGTAGAGAAAGGCTGGCTCAATAGTATTAGTGACGATTTGCGGTCGGAAGGTGTTACTTTATATGGAGGACCGAAAGCAAGTTCTCTGTTGAATGTTCCACTTGCTCGTTCATTACATCATGAGTACTGTTCGTTGGCTTGCACCTTGGAAATCGTGGATGATGTTTATGCAGCTATTCATCATATAAATCTTTATGGAAGTGCACATACCGATTCCATTGTCACAGAAGATCATGAAGTAGCTGATGTATTTCTTCGTCAAGTCGACAGTGCTGCTGTTTTTCACAATGCTAGTACAAGATTCAGCGATGGAGCACGATTTGGATTAGGCGCAGAGGTTGGAATAAGCACAAGCAGGATTCATGCTCGGGGTCCAGTAGGAGTTGATGGATTGTTAACAACCAGATGGCTTCTCAAAGGAAGTGGACAAGTAGTAGATGGTGATAAAACAGTTACCTACACCCACAAAGACCTAACTACTTGA

Protein sequence

>Msa0416020

MANADPCRDFVKDVKRIIIKVGTAVVTRQDGRLAVGKLGALCEQIKELNILGYEVILVSSGAVGLGRQRLRYRKLIQSSFADLQKPQVELDGKACAAVGQSSLMATYDDLFSQLDVTSAQLLVTDNDFRDQDFRKQLSETVRSLLALKVIPIFNENDAVSTRKAPYEDSSGIFWDNDSLSALLALELKADLLILLSDVDGLYNGPPSDPLSKLIHTYIKEKHQNEITFGDKSRVGRGGMTAKVKASVHAADAGIPVIITSGNAAENLTKILQGQRIGTLFHKDAHKWVPSKEVDVREMAVAARDCSRRLQAVSSEERKQILLNIADALQSREKEIRIENEADVVAAQEAGYEKSLVARLVLKSEKARDSSRLANNIRIIANMEDPIGRVLKRTELAEGLILEKTSSPLGVLLIIFESRPDALVQIASLAIRSGNGLLLKGGKEANRSNAILHKVITEAIPDTVGSKLIGLVTSRAEIPELLKLDDVIDLVIPRGSNKLVSDIKSSTKIPVLGHADGICHVYVDKSANLEMAKQIVLDAKTDYPSGCNAMETLLVHKDLVEKGWLNSISDDLRSEGVTLYGGPKASSLLNVPLARSLHHEYCSLACTLEIVDDVYAAIHHINLYGSAHTDSIVTEDHEVADVFLRQVDSAAVFHNASTRFSDGARFGLGAEVGISTSRIHARGPVGVDGLLTTRWLLKGSGQVVDGDKTVTYTHKDLTT*