AlfalfaGEDB | Msa0246070

M. sativa cultivar zhongmu-4 / Msa0246070

KEGG: K15176
GO: GO:0000122 GO:0000428 GO:0000785 GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008213 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010638 GO:0016020 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016591 GO:0016593 GO:0018022 GO:0018023 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0030880 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032270 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0034243 GO:0034968 GO:0035327 GO:0036211 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051241 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051568 GO:0051569 GO:0051571 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071840 GO:0080090 GO:0080182 GO:1901564 GO:1902275 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905269 GO:1990234 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141 GO:2001252
PFAM: PF13428.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0246070	XP_013463523.1	99.310	580	4	0	1	580	504	1083	0.0	1194

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0246070	sp\|B5X0I6\|VIP6_ARATH	67.652	575	174	5	3	567	506	1078	0.0	751

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0246070	A0A072V869	99.310	580	4	0	1	580	504	1083	0.0	1194

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006110	Msa0246070	0.805081	1.585351e-49	-8.615850e-47
Msa0027600	Msa0246070	0.813536	2.435505e-51	-8.615850e-47
Msa0031180	Msa0246070	0.816646	4.968141e-52	-8.615850e-47
Msa0036140	Msa0246070	0.841443	4.736825e-58	-8.615850e-47
Msa0044090	Msa0246070	0.837075	6.435961e-57	-8.615850e-47
Msa0045790	Msa0246070	0.830966	2.180626e-55	-8.615850e-47
Msa0046160	Msa0246070	0.829574	4.770145e-55	-8.615850e-47
Msa0054820	Msa0246070	0.802149	6.432645e-49	-8.615850e-47
Msa0080090	Msa0246070	0.808124	3.612692e-50	-8.615850e-47
Msa0084080	Msa0246070	0.821103	4.823763e-53	-8.615850e-47

Showing 1 to 10 of 86 entries

Previous1 2 3 4 5…9Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0246070	MtrunA17_Chr2g0300501	99.310	580	4	0	1	580	504	1083	0.0	1194

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 268 sgRNAs with CRISPR-Local

Find 1157 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACGCTCAAATGCCTGT+CGG	0.642330	2_2:+26460465	None:intergenic
AAACCTTAATGTGTAGTTTG+AGG	0.456515	2_2:+26451381	None:intergenic
AAAGCTAGAAGCTACTCATT+TGG	0.397882	2_2:-26453041	Msa0246070:CDS
AAAGGAGGAGCATTTCATTT+TGG	0.273049	2_2:-26463890	Msa0246070:five_prime_UTR
AAATAATTTCAGATTTACCC+TGG	0.534610	2_2:+26448341	None:intergenic
AAATCCATGAATATGTAGGT+TGG	0.551401	2_2:+26450534	None:intergenic
AAATGAGTAGCTTCTAGCTT+TGG	0.363956	2_2:+26453043	None:intergenic
AACAAAGAGGCCAGTTCTTT+TGG	0.225047	2_2:-26465646	Msa0246070:five_prime_UTR
AACAAGCTCCTCTTGATCTT+TGG	0.287628	2_2:-26465313	Msa0246070:five_prime_UTR
AACACGCTCAAATGCCTGTC+GGG	0.399209	2_2:+26460466	None:intergenic

Showing 1 to 10 of 268 entries

Previous1 2 3 4 5…27Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATCGTTAACCTTTCGAAATT+AGG	-	chr2_2:26448094-26448113	Msa0246070:three_prime_UTR	30.0%
TCGTTAACCTTTCGAAATTA+GGG	-	chr2_2:26448095-26448114	Msa0246070:three_prime_UTR	30.0%
CAAAAATTGTACAACATCGA+AGG	+	chr2_2:26448632-26448651	None:intergenic	30.0%
TCGCAAAAATGACTACAAAA+AGG	+	chr2_2:26448682-26448701	None:intergenic	30.0%
AAATAAGCCAATCCAAAAAC+AGG	+	chr2_2:26448926-26448945	None:intergenic	30.0%
AGAGACAAAACAAAGAGAAA+AGG	-	chr2_2:26449688-26449707	Msa0246070:intron	30.0%
GGCAACACAATATTACAATA+AGG	-	chr2_2:26449727-26449746	Msa0246070:intron	30.0%
GAAACAACCAAATAATTAGC+TGG	+	chr2_2:26449886-26449905	None:intergenic	30.0%
TAAGAAACTGATAGAATGGA+GGG	+	chr2_2:26450273-26450292	None:intergenic	30.0%
TTAAGAAACTGATAGAATGG+AGG	+	chr2_2:26450274-26450293	None:intergenic	30.0%

Showing 1 to 10 of 1,157 entries

Previous1 2 3 4 5…116Next

Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	26447949	26465669	26447949	ID=Msa0246070;Name=Msa0246070
chr2_2	mRNA	26447949	26465669	26447949	ID=Msa0246070-mRNA-1;Parent=Msa0246070;Name=Msa0246070-mRNA-1;_AED=0.05;_eAED=0.05;_QI=1776\|1\|1\|1\|0.91\|0.95\|24\|432\|580
chr2_2	exon	26447949	26448560	26447949	ID=Msa0246070-mRNA-1:exon:9790;Parent=Msa0246070-mRNA-1
chr2_2	exon	26448902	26449204	26448902	ID=Msa0246070-mRNA-1:exon:9789;Parent=Msa0246070-mRNA-1
chr2_2	exon	26450186	26450257	26450186	ID=Msa0246070-mRNA-1:exon:9788;Parent=Msa0246070-mRNA-1
chr2_2	exon	26450354	26450620	26450354	ID=Msa0246070-mRNA-1:exon:9787;Parent=Msa0246070-mRNA-1
chr2_2	exon	26451312	26451536	26451312	ID=Msa0246070-mRNA-1:exon:9786;Parent=Msa0246070-mRNA-1
chr2_2	exon	26451640	26451747	26451640	ID=Msa0246070-mRNA-1:exon:9785;Parent=Msa0246070-mRNA-1
chr2_2	exon	26451834	26451935	26451834	ID=Msa0246070-mRNA-1:exon:9784;Parent=Msa0246070-mRNA-1
chr2_2	exon	26453015	26453110	26453015	ID=Msa0246070-mRNA-1:exon:9783;Parent=Msa0246070-mRNA-1
chr2_2	exon	26453253	26453411	26453253	ID=Msa0246070-mRNA-1:exon:9782;Parent=Msa0246070-mRNA-1
chr2_2	exon	26453899	26453979	26453899	ID=Msa0246070-mRNA-1:exon:9781;Parent=Msa0246070-mRNA-1
chr2_2	exon	26454724	26454987	26454724	ID=Msa0246070-mRNA-1:exon:9780;Parent=Msa0246070-mRNA-1
chr2_2	exon	26455073	26455165	26455073	ID=Msa0246070-mRNA-1:exon:9779;Parent=Msa0246070-mRNA-1
chr2_2	exon	26455261	26455368	26455261	ID=Msa0246070-mRNA-1:exon:9778;Parent=Msa0246070-mRNA-1
chr2_2	exon	26456976	26457068	26456976	ID=Msa0246070-mRNA-1:exon:9777;Parent=Msa0246070-mRNA-1
chr2_2	exon	26458193	26458293	26458193	ID=Msa0246070-mRNA-1:exon:9776;Parent=Msa0246070-mRNA-1
chr2_2	exon	26459180	26459264	26459180	ID=Msa0246070-mRNA-1:exon:9775;Parent=Msa0246070-mRNA-1
chr2_2	exon	26459955	26460169	26459955	ID=Msa0246070-mRNA-1:exon:9774;Parent=Msa0246070-mRNA-1
chr2_2	exon	26460306	26460369	26460306	ID=Msa0246070-mRNA-1:exon:9773;Parent=Msa0246070-mRNA-1
chr2_2	exon	26460460	26460576	26460460	ID=Msa0246070-mRNA-1:exon:9772;Parent=Msa0246070-mRNA-1
chr2_2	exon	26462113	26462166	26462113	ID=Msa0246070-mRNA-1:exon:9771;Parent=Msa0246070-mRNA-1
chr2_2	exon	26463454	26463554	26463454	ID=Msa0246070-mRNA-1:exon:9770;Parent=Msa0246070-mRNA-1
chr2_2	exon	26463824	26464018	26463824	ID=Msa0246070-mRNA-1:exon:9769;Parent=Msa0246070-mRNA-1
chr2_2	exon	26464177	26464243	26464177	ID=Msa0246070-mRNA-1:exon:9768;Parent=Msa0246070-mRNA-1
chr2_2	exon	26465301	26465669	26465301	ID=Msa0246070-mRNA-1:exon:9767;Parent=Msa0246070-mRNA-1
chr2_2	five_prime_UTR	26465301	26465669	26465301	ID=Msa0246070-mRNA-1:five_prime_utr;Parent=Msa0246070-mRNA-1
chr2_2	five_prime_UTR	26464177	26464243	26464177	ID=Msa0246070-mRNA-1:five_prime_utr;Parent=Msa0246070-mRNA-1
chr2_2	five_prime_UTR	26463824	26464018	26463824	ID=Msa0246070-mRNA-1:five_prime_utr;Parent=Msa0246070-mRNA-1
chr2_2	five_prime_UTR	26463454	26463554	26463454	ID=Msa0246070-mRNA-1:five_prime_utr;Parent=Msa0246070-mRNA-1
chr2_2	five_prime_UTR	26462113	26462166	26462113	ID=Msa0246070-mRNA-1:five_prime_utr;Parent=Msa0246070-mRNA-1
chr2_2	five_prime_UTR	26460460	26460576	26460460	ID=Msa0246070-mRNA-1:five_prime_utr;Parent=Msa0246070-mRNA-1
chr2_2	five_prime_UTR	26460306	26460369	26460306	ID=Msa0246070-mRNA-1:five_prime_utr;Parent=Msa0246070-mRNA-1
chr2_2	five_prime_UTR	26459955	26460169	26459955	ID=Msa0246070-mRNA-1:five_prime_utr;Parent=Msa0246070-mRNA-1
chr2_2	five_prime_UTR	26459180	26459264	26459180	ID=Msa0246070-mRNA-1:five_prime_utr;Parent=Msa0246070-mRNA-1
chr2_2	five_prime_UTR	26458193	26458293	26458193	ID=Msa0246070-mRNA-1:five_prime_utr;Parent=Msa0246070-mRNA-1
chr2_2	five_prime_UTR	26456976	26457068	26456976	ID=Msa0246070-mRNA-1:five_prime_utr;Parent=Msa0246070-mRNA-1
chr2_2	five_prime_UTR	26455261	26455368	26455261	ID=Msa0246070-mRNA-1:five_prime_utr;Parent=Msa0246070-mRNA-1
chr2_2	five_prime_UTR	26455073	26455165	26455073	ID=Msa0246070-mRNA-1:five_prime_utr;Parent=Msa0246070-mRNA-1
chr2_2	five_prime_UTR	26454874	26454987	26454874	ID=Msa0246070-mRNA-1:five_prime_utr;Parent=Msa0246070-mRNA-1
chr2_2	CDS	26454724	26454873	26454724	ID=Msa0246070-mRNA-1:cds;Parent=Msa0246070-mRNA-1
chr2_2	CDS	26453899	26453979	26453899	ID=Msa0246070-mRNA-1:cds;Parent=Msa0246070-mRNA-1
chr2_2	CDS	26453253	26453411	26453253	ID=Msa0246070-mRNA-1:cds;Parent=Msa0246070-mRNA-1
chr2_2	CDS	26453015	26453110	26453015	ID=Msa0246070-mRNA-1:cds;Parent=Msa0246070-mRNA-1
chr2_2	CDS	26451834	26451935	26451834	ID=Msa0246070-mRNA-1:cds;Parent=Msa0246070-mRNA-1
chr2_2	CDS	26451640	26451747	26451640	ID=Msa0246070-mRNA-1:cds;Parent=Msa0246070-mRNA-1
chr2_2	CDS	26451312	26451536	26451312	ID=Msa0246070-mRNA-1:cds;Parent=Msa0246070-mRNA-1
chr2_2	CDS	26450354	26450620	26450354	ID=Msa0246070-mRNA-1:cds;Parent=Msa0246070-mRNA-1
chr2_2	CDS	26450186	26450257	26450186	ID=Msa0246070-mRNA-1:cds;Parent=Msa0246070-mRNA-1
chr2_2	CDS	26448902	26449204	26448902	ID=Msa0246070-mRNA-1:cds;Parent=Msa0246070-mRNA-1
chr2_2	CDS	26448381	26448560	26448381	ID=Msa0246070-mRNA-1:cds;Parent=Msa0246070-mRNA-1
chr2_2	three_prime_UTR	26447949	26448380	26447949	ID=Msa0246070-mRNA-1:three_prime_utr;Parent=Msa0246070-mRNA-1

Gene Sequence

>Msa0246070

ATGCAACTATTTCACGACCTTGAAAGTAACGGTCACCATGTTGAAGTACCATGGGATAAAGTCACAGTACTCTTTAACCTGGCCAGATTACTTGAGCAATTAAATGAATCTGGAACTGCAAGTGTATTATATCGCCTAATCTTGTTCAAGTACCCAGACTACATTGATGCATATCTGAGGCTAGCGGCTATTGCAAAGGCTCGGAACAACATTCTATTAAGCATTGAATTGGTTAATGATGCCCTGAAGGTGAATGACAAGTGTCCAAATGCATTATCTATGCTGGGTGAGTTGGAGTTGAAAAATGATGATTGGGTGAAGGCAAAAGAAACTCTCCGGAGAGCGAGTGATGCCACTGACGGGAAGGACTCATATGCTACACTTTCTCTCGGAAACTGGAACTACTTTGCTGCAGTTAGGAATGAAAAGAGAAATCCAAAGCTAGAAGCTACTCATTTGGAAAAGGCGAAGGAGCTTTATACAAGAGTTATGATTCAGCATTCTGCTAATTTATATGCTGCCAATGGTGCTGCGGTTGTTTTTGCGGAGAAAGGCCATTTTGATGTTTCAAAAGATATCTTTGCACAGGTTCAAGAAGCTGCCAGTGGTAGCGTTTTTGTCCAGATGCCTGACGTTTGGATAAATCTGGCACATGTTTATTTTGCTCAGGGAAATTTTGCTTTGGCCGTCAAAATGTATCAGAATTGCTTGCGGAAGTTTTATCATAACACGGACTCACAAATACTTCTATACCTGGCTCGTACCCATTATGAAGCAGAACAGTGGCAAGACTGTATTAAAACTCTACAGAGAGCCATCCATTTGGCACCCTCAAACTACACATTAAGGTTTGATGCAGGGGTTGCAATGCAAAAGTTTTCAGCATCAACCCTTCAAAAGGCAAAGCGGACTGCAGATGAAGTGAGAGCAACGGTTGCAGGGCTGCAAAATGCTGTTCGTATATTTAGTCAGTTGTCTGCTGCTTCCAACCTACATATTCATGGATTTGATGAGAAGAAGATTGACACTCATGTTGGATACTGCACCCACTTACTTTCGGCTGCAAAAGTTCATCTTGAAGCAGCTGAACGTGAAGAACAACAAATACGGCAGAGACAGGAACTTGCTCGTCAGGTTGCATTGGCTGAGGAAGCACGGCGCAAGGCTGAAGAGCAAAGAAAGATTCAGATGGACAGAAGAAAGCATGAGGACGAATTGAAAATGGTGCAACAACAGGAGGAAAATTTTAAGCGTGTTAAGGAACAATGGAAGAGCAGCACACATTCAAAACGGAGGGAAAGGTCCGATGATGAAGACGGTGGGACTGCTGAGAAAAAGAGAAGAAAAGGTGGAAAGAGGAGGAAGAAGGATAAACACTCAAAATCACACAATGACACAGAAGAAACAGAGGCTGATATGATGGATGAACAGGAAATGGAGGATGAAGATGTTGACATGAACTCCAGAGAGGAGCCCCAAACTCAGATGAACGATGATGAGGAAAATCCCCACGGTCTTCTCGCATTAGCTGGACTTGAGGATTCTGATGCAGATGATGAGCCGGCTGGACCTCCCTCAACCATTAGCAGGCGGAGGCAGGCATTATCAGAATCCGACGACGATCAGCCAATAATGAGGCAAACGAGTCCTGTAAGAGAACAGTCTGTTGATATGGAGGAGAGTGATGGAGAAATCAGGGATGAGAAGAGACATGAAGATGATGGCAGTGATGAGGAGAAATAA

Protein sequence

>Msa0246070

MQLFHDLESNGHHVEVPWDKVTVLFNLARLLEQLNESGTASVLYRLILFKYPDYIDAYLRLAAIAKARNNILLSIELVNDALKVNDKCPNALSMLGELELKNDDWVKAKETLRRASDATDGKDSYATLSLGNWNYFAAVRNEKRNPKLEATHLEKAKELYTRVMIQHSANLYAANGAAVVFAEKGHFDVSKDIFAQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAVKMYQNCLRKFYHNTDSQILLYLARTHYEAEQWQDCIKTLQRAIHLAPSNYTLRFDAGVAMQKFSASTLQKAKRTADEVRATVAGLQNAVRIFSQLSAASNLHIHGFDEKKIDTHVGYCTHLLSAAKVHLEAAEREEQQIRQRQELARQVALAEEARRKAEEQRKIQMDRRKHEDELKMVQQQEENFKRVKEQWKSSTHSKRRERSDDEDGGTAEKKRRKGGKRRKKDKHSKSHNDTEETEADMMDEQEMEDEDVDMNSREEPQTQMNDDEENPHGLLALAGLEDSDADDEPAGPPSTISRRRQALSESDDDQPIMRQTSPVREQSVDMEESDGEIRDEKRHEDDGSDEEK*