AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0763260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0763260 MtrunA17_Chr5g0410401 55.484 310 80 3 195 446 474 783 1.54e-96 317
Msa0763260 MtrunA17_Chr5g0410481 34.100 478 169 9 195 533 588 1058 1.87e-60 220
Msa0763260 MtrunA17_Chr5g0410351 34.004 497 183 10 195 551 598 1089 1.14e-58 215
Msa0763260 MtrunA17_Chr5g0410161 32.591 494 192 9 197 551 747 1238 1.30e-56 209
Msa0763260 MtrunA17_Chr5g0410261 32.861 423 180 11 195 522 631 1044 3.13e-47 181
Msa0763260 MtrunA17_Chr1g0178241 48.352 182 48 3 60 196 28 208 2.59e-46 176
Msa0763260 MtrunA17_Chr5g0410301 32.080 399 173 9 195 532 600 961 2.08e-43 169
Msa0763260 MtrunA17_Chr7g0271301 40.000 195 75 1 48 200 5 199 4.55e-41 153
Msa0763260 MtrunA17_Chr5g0441151 61.364 88 34 0 106 193 55 142 3.19e-32 129
Msa0763260 MtrunA17_Chr5g0439091 66.197 71 24 0 124 194 1 71 3.85e-30 115
Msa0763260 MtrunA17_Chr7g0229881 34.197 193 59 3 47 193 1 171 3.65e-28 117
Msa0763260 MtrunA17_Chr5g0414301 27.451 408 198 11 197 533 174 554 1.66e-25 111
Msa0763260 MtrunA17_Chr7g0235231 52.222 90 43 0 105 194 44 133 2.00e-24 105
Msa0763260 MtrunA17_Chr7g0244231 27.525 396 222 11 196 533 603 991 3.65e-24 108
Msa0763260 MtrunA17_Chr7g0229821 36.000 150 50 2 47 150 1 150 3.80e-23 96.3
Msa0763260 MtrunA17_Chr5g0430291 25.519 482 263 16 111 531 526 972 1.79e-22 103
Msa0763260 MtrunA17_Chr5g0430341 29.518 332 203 11 208 533 210 516 2.74e-22 101
Msa0763260 MtrunA17_Chr5g0431051 27.604 384 210 10 196 533 613 974 3.54e-22 102
Msa0763260 MtrunA17_Chr8g0352211 28.682 387 207 12 195 541 1597 1954 3.70e-22 102
Msa0763260 MtrunA17_Chr5g0414181 27.348 362 215 10 195 533 637 973 9.60e-22 100
Msa0763260 MtrunA17_Chr5g0430641 27.089 395 220 12 197 533 612 996 6.16e-21 98.6
Msa0763260 MtrunA17_Chr5g0430721 27.972 286 173 9 264 530 764 1035 1.22e-20 97.4
Msa0763260 MtrunA17_Chr6g0456131 28.162 419 206 11 197 533 624 1029 1.36e-20 97.4
Msa0763260 MtrunA17_Chr5g0430901 29.514 288 173 10 247 531 589 849 1.59e-20 97.1
Msa0763260 MtrunA17_Chr5g0430441 26.562 384 214 11 196 533 611 972 1.66e-20 97.1
Msa0763260 MtrunA17_Chr8g0338861 29.861 288 166 6 281 533 370 656 2.10e-20 96.3
Msa0763260 MtrunA17_Chr5g0430581 27.154 383 211 11 197 533 605 965 2.20e-20 96.7
Msa0763260 MtrunA17_Chr5g0430511 24.623 398 211 10 203 533 619 994 1.19e-19 94.4
Msa0763260 MtrunA17_Chr6g0470001 27.179 390 210 15 195 527 214 586 3.84e-19 92.4
Msa0763260 MtrunA17_Chr7g0218941 27.154 383 214 11 197 537 596 955 3.95e-19 92.4
Msa0763260 MtrunA17_Chr6g0471941 29.225 284 164 6 275 522 653 935 4.21e-19 92.4
Msa0763260 MtrunA17_Chr5g0430141 26.434 401 218 10 197 533 614 1001 7.67e-19 91.7
Msa0763260 MtrunA17_Chr5g0429961 26.632 383 213 11 197 533 609 969 1.04e-18 91.3
Msa0763260 MtrunA17_Chr3g0087301 27.350 351 210 12 210 521 660 1004 1.83e-18 90.5
Msa0763260 MtrunA17_Chr4g0027251 25.202 496 288 15 102 531 521 999 1.84e-18 90.5
Msa0763260 MtrunA17_Chr2g0316291 25.412 425 219 15 207 538 639 1058 3.50e-18 89.7
Msa0763260 MtrunA17_Chr6g0470011 25.916 382 209 15 203 527 615 979 4.42e-18 89.4
Msa0763260 MtrunA17_Chr1g0171991 48.837 86 43 1 111 196 18 102 5.69e-18 87.4
Msa0763260 MtrunA17_Chr5g0414211 24.843 318 221 9 216 519 1 314 5.99e-18 87.0
Msa0763260 MtrunA17_Chr6g0470081 27.889 398 193 17 197 527 609 979 9.16e-18 88.2
Msa0763260 MtrunA17_Chr6g0468201 26.161 409 209 16 197 544 210 586 1.03e-17 87.8
Msa0763260 MtrunA17_Chr5g0415471 25.840 387 216 14 197 523 625 1000 1.04e-17 88.2
Msa0763260 MtrunA17_Chr5g0414311 24.603 378 205 13 196 521 626 975 1.96e-17 87.4
Msa0763260 MtrunA17_Chr6g0468021 26.247 381 206 12 197 526 603 959 2.46e-17 87.0
Msa0763260 MtrunA17_Chr5g0429951 28.165 387 206 10 197 533 613 977 3.06e-17 86.7
Msa0763260 MtrunA17_Chr1g0155321 25.316 395 217 12 203 533 613 993 4.31e-17 85.9
Msa0763260 MtrunA17_Chr5g0430621 29.758 289 161 13 268 533 727 996 5.29e-16 82.4
Msa0763260 MtrunA17_Chr8g0338261 26.087 299 170 7 275 533 631 918 9.03e-16 81.6
Msa0763260 MtrunA17_Chr3g0085331 28.117 377 192 17 197 512 645 1003 1.01e-15 81.6
Msa0763260 MtrunA17_Chr4g0071011 28.859 298 192 11 247 533 199 487 1.40e-15 80.1
Msa0763260 MtrunA17_Chr3g0090401 30.472 233 119 6 197 392 844 1070 1.79e-15 80.9
Msa0763260 MtrunA17_Chr6g0468341 28.058 278 156 9 265 522 527 780 2.85e-15 80.1
Msa0763260 MtrunA17_Chr3g0081461 60.656 61 24 0 106 166 59 119 3.47e-15 72.4
Msa0763260 MtrunA17_Chr6g0448801 43.750 64 36 0 112 175 25 88 6.04e-15 70.9
Msa0763260 MtrunA17_Chr5g0414201 23.919 347 188 11 197 491 617 939 1.08e-14 78.2
Msa0763260 MtrunA17_Chr6g0468121 25.397 378 208 14 196 522 605 959 2.75e-14 77.0
Msa0763260 MtrunA17_Chr5g0414161 25.000 288 164 9 196 435 107 390 2.84e-14 75.5
Msa0763260 MtrunA17_Chr3g0085471 27.073 410 191 19 197 512 635 1030 7.02e-14 75.9
Msa0763260 MtrunA17_Chr8g0346831 28.276 290 160 7 278 525 658 941 7.03e-14 75.9
Msa0763260 MtrunA17_Chr1g0155991 24.747 396 218 11 203 533 615 995 7.19e-14 75.5
Msa0763260 MtrunA17_Chr6g0468451 24.615 390 213 14 197 522 605 977 7.90e-14 75.5
Msa0763260 MtrunA17_Chr3g0089421 25.754 431 213 18 195 529 633 1052 1.59e-13 74.7
Msa0763260 MtrunA17_Chr3g0083751 27.041 392 203 16 195 522 634 1006 1.75e-13 74.3
Msa0763260 MtrunA17_Chr3g0089211 25.835 449 238 18 163 522 647 1089 3.03e-13 73.9
Msa0763260 MtrunA17_Chr3g0085501 26.793 474 238 21 197 594 645 1085 3.54e-13 73.6
Msa0763260 MtrunA17_Chr8g0340851 66.038 53 4 1 687 725 26 78 3.86e-13 65.9
Msa0763260 MtrunA17_Chr8g0352861 26.823 384 184 16 196 505 644 1004 4.61e-13 73.2
Msa0763260 MtrunA17_Chr3g0085651 25.326 383 181 15 196 504 628 979 4.83e-13 73.2
Msa0763260 MtrunA17_Chr6g0468381 25.439 342 207 13 209 526 77 394 8.48e-13 71.6
Msa0763260 MtrunA17_Chr5g0417251 24.275 276 150 9 197 420 386 654 9.86e-13 71.6
Msa0763260 MtrunA17_Chr5g0421031 86.486 37 5 0 684 720 81 117 1.34e-12 65.9
Msa0763260 MtrunA17_Chr2g0314941 86.486 37 5 0 684 720 83 119 1.41e-12 65.9
Msa0763260 MtrunA17_Chr3g0089441 24.337 415 231 15 163 505 106 509 1.91e-12 70.9
Msa0763260 MtrunA17_Chr6g0468271 22.105 380 233 10 197 522 602 972 3.19e-12 70.5
Msa0763260 MtrunA17_Chr6g0456121 24.619 394 249 12 156 533 606 967 5.85e-12 69.3
Msa0763260 MtrunA17_Chr6g0468101 24.936 389 217 15 197 526 566 938 8.20e-12 68.9
Msa0763260 MtrunA17_Chr3g0083621 25.783 415 217 19 195 546 640 1026 9.60e-12 68.9
Msa0763260 MtrunA17_Chr3g0089651 24.138 464 229 18 163 522 604 1048 9.80e-12 68.9
Msa0763260 MtrunA17_Chr8g0348931 26.714 423 209 20 195 525 637 1050 1.26e-11 68.6
Msa0763260 MtrunA17_Chr3g0092261 23.729 472 220 17 163 522 644 1087 1.71e-11 68.2
Msa0763260 MtrunA17_Chr3g0092241 23.367 398 192 13 195 505 631 1002 2.11e-11 67.8
Msa0763260 MtrunA17_Chr6g0468251 26.071 280 183 8 256 527 60 323 3.15e-11 66.2
Msa0763260 MtrunA17_Chr3g0080871 24.682 393 177 16 195 521 617 956 3.64e-11 67.0
Msa0763260 MtrunA17_Chr3g0085561 27.604 384 182 17 197 506 614 975 9.36e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 144 sgRNAs with CRISPR-Local

Find 427 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGCATACTTTGATCATTT+TGG 0.099646 5_2:+22246867 Msa0763260:CDS
CCTCAAATCACTTGAGAAAT+TGG 0.148004 5_2:+22246786 Msa0763260:CDS
CATGCCCTTGGTGTGGTATT+TGG 0.214742 5_2:+22249061 Msa0763260:CDS
TCAAATTTCTAGAACTTCTA+AGG 0.235707 5_2:+22245385 Msa0763260:CDS
TTTGGTGAGCTTTATAGTTC+TGG 0.242256 5_2:+22249079 Msa0763260:CDS
CATCTCTATTGGCTTGCTTT+TGG 0.263838 5_2:+22249274 Msa0763260:CDS
AATGGAAGAGTCTTCAGTTT+TGG 0.276227 5_2:-22246679 None:intergenic
ATTAGCTCATCAATGTTCTT+AGG 0.298289 5_2:-22244884 None:intergenic
TCTTCTTCCTCCAATATTCC+TGG 0.302423 5_2:-22244781 None:intergenic
ACCTTGGTCTTGTTGCTTCA+TGG 0.302508 5_2:+22249346 Msa0763260:CDS
GGACAATCATCACCTGTATT+TGG 0.304914 5_2:-22246919 None:intergenic
TTGTCTCGGCTCGGCATTGA+AGG 0.317550 5_2:+22249303 Msa0763260:CDS
TGCACCTGCCCCAGGAATAT+TGG 0.325996 5_2:+22244771 Msa0763260:CDS
ATGATTTAGATGCTTGCTTC+TGG 0.335507 5_2:+22248936 Msa0763260:CDS
GGCGGAGCCAAGAGCTTCCT+TGG 0.338803 5_2:-22244296 None:intergenic
ATGAGAAAGGTTTGGGCCTT+AGG 0.339195 5_2:+22244644 Msa0763260:CDS
GATTAGGATCGGAGAATATA+TGG 0.340596 5_2:-22243938 None:intergenic
AAGTGATTTGAGGTTGTCTA+TGG 0.340838 5_2:-22246776 None:intergenic
CTCAGATGAACGCACAAGTC+TGG 0.341812 5_2:+22244738 Msa0763260:CDS
TTGGATTGTTGGAAGATTCT+TGG 0.345117 5_2:+22249109 Msa0763260:CDS
TCCGTATTGGTTTCCTTACA+TGG 0.361783 5_2:+22245287 Msa0763260:CDS
CTGAGAGCAATTTCTATTGT+TGG 0.366149 5_2:+22245246 Msa0763260:CDS
CATCTATCTCAAGATGCTTC+AGG 0.369583 5_2:-22244910 None:intergenic
TTGAAGATATGAGAAAGGTT+TGG 0.374011 5_2:+22244636 Msa0763260:CDS
CCTCCTTCCATTGTAGACTA+TGG 0.375463 5_2:+22249401 Msa0763260:CDS
TGAAGATATGAGAAAGGTTT+GGG 0.379659 5_2:+22244637 Msa0763260:CDS
TTAGAAGTTCTAGAAATTTG+AGG 0.387304 5_2:-22245383 None:intergenic
TAGAAAATCGGAGCACGATC+TGG 0.388351 5_2:-22246104 None:intergenic
ACACTGATTCCACTGGGAAT+AGG 0.390037 5_2:+22244587 Msa0763260:CDS
AGTTCTAGAAATTTGAGGTT+TGG 0.390651 5_2:-22245378 None:intergenic
CTGAAGCATCTTGAGATAGA+TGG 0.391933 5_2:+22244911 Msa0763260:CDS
CCAATTTCTCAAGTGATTTG+AGG 0.391994 5_2:-22246786 None:intergenic
GGAGCACGATCTGGCAAAAT+CGG 0.394553 5_2:-22246095 None:intergenic
TGATGAAGAGCTGGTTCTCA+TGG 0.395778 5_2:+22246336 Msa0763260:CDS
TGAGAGCAATTTCTATTGTT+GGG 0.397723 5_2:+22245247 Msa0763260:CDS
TTGTTGCTTCATGGTACCTT+TGG 0.404803 5_2:+22249355 Msa0763260:CDS
CGAATGGAAAGTGTCAATTC+TGG 0.409173 5_2:+22246127 Msa0763260:CDS
TCTTGAGATAGATGGATGTT+TGG 0.412288 5_2:+22244919 Msa0763260:CDS
TTCAGGTTCTTGCGTTAAGA+TGG 0.418219 5_2:+22245145 Msa0763260:intron
TCCTAGTCTTGATGAAGAGC+TGG 0.420813 5_2:+22246327 Msa0763260:CDS
ATTTCTATTGTTGGGTATGT+AGG 0.423148 5_2:+22245255 Msa0763260:CDS
CTTGTGCGTTCATCTGAGTT+TGG 0.423616 5_2:-22244733 None:intergenic
GCGGCCTCATCTAATGTTAG+AGG 0.428187 5_2:-22244836 None:intergenic
CTTCTTCCTCCAATATTCCT+GGG 0.428251 5_2:-22244780 None:intergenic
TCCTCCAATATTCCTGGGGC+AGG 0.429808 5_2:-22244775 None:intergenic
TCTTGTGCTTCTGTTCATGA+TGG 0.432793 5_2:+22249448 Msa0763260:CDS
TAGGTAAAACACTTCCGTAT+TGG 0.433750 5_2:+22245274 Msa0763260:CDS
ACATGGCACTTTCATGCCCT+TGG 0.434310 5_2:+22249049 Msa0763260:CDS
ACATGGCTATGCATCTCTAT+TGG 0.435241 5_2:+22249263 Msa0763260:CDS
GTGCCATGTAGAGCTTATAA+AGG 0.437157 5_2:-22249035 None:intergenic
CTGGATCAGTGTTGGATTGT+TGG 0.438560 5_2:+22249098 Msa0763260:CDS
TTGGATATATTACCTTCCCT+TGG 0.438882 5_2:+22249128 Msa0763260:CDS
GGCAGATTGTCTTTACCACT+TGG 0.441512 5_2:+22249005 Msa0763260:CDS
CCTGTATTTGGTTGACACCT+TGG 0.442183 5_2:-22246907 None:intergenic
GCTCTTGGCTCCGCCGGACC+CGG 0.444233 5_2:+22244304 Msa0763260:CDS
GTGTTACCAATGAGCACTTT+GGG 0.444555 5_2:-22244404 None:intergenic
ACTTTCCATTCGTAGAAAAT+CGG 0.444933 5_2:-22246116 None:intergenic
ATTTCTAGAACTTCTAAGGT+TGG 0.446420 5_2:+22245389 Msa0763260:CDS
ATCTATTGAAGATATGAGAA+AGG 0.448015 5_2:+22244631 Msa0763260:CDS
TTAACAAGTGATTCCATGTA+AGG 0.452006 5_2:-22245300 None:intergenic
CGAAGCCATAGTGAACGATT+AGG 0.461326 5_2:-22243954 None:intergenic
CTACCTCCCAAAGTGCTCAT+TGG 0.461844 5_2:+22244398 Msa0763260:CDS
CCGATCCTAATCGTTCACTA+TGG 0.472174 5_2:+22243949 Msa0763260:CDS
AGTGTTACCAATGAGCACTT+TGG 0.480385 5_2:-22244405 None:intergenic
AAGGAAGCTCTTGGCTCCGC+CGG 0.485386 5_2:+22244298 Msa0763260:CDS
AAGAGAAGAAAAGAAGTGTA+AGG 0.487079 5_2:-22249429 None:intergenic
TTATAGTTCTGGATCAGTGT+TGG 0.487535 5_2:+22249090 Msa0763260:CDS
CAGTAAAATCGCAACACTCC+TGG 0.489576 5_2:-22244683 None:intergenic
ATTACAACTGAGAACATGTA+AGG 0.490413 5_2:-22248428 None:intergenic
TCAGACAAAGAAGTCATTTG+AGG 0.499703 5_2:-22246751 None:intergenic
AGTGGCATGCAAGTTAGGTC+AGG 0.500455 5_2:-22246301 None:intergenic
AAAACTGAAGACTCTTCCAT+TGG 0.503696 5_2:+22246681 Msa0763260:CDS
CGCTTCAGATTATTTGCCCA+AGG 0.504942 5_2:+22244279 Msa0763260:intron
GATGAAGAGCTGGTTCTCAT+GGG 0.507522 5_2:+22246337 Msa0763260:CDS
GCGGAGCCAAGAGCTTCCTT+GGG 0.512378 5_2:-22244295 None:intergenic
GAAGCTTATGCACCTGCCCC+AGG 0.515230 5_2:+22244763 Msa0763260:CDS
CCAAGGTGTCAACCAAATAC+AGG 0.519610 5_2:+22246907 Msa0763260:CDS
TCAGATGAACGCACAAGTCT+GGG 0.519912 5_2:+22244739 Msa0763260:CDS
AGAAATTGCTCTCAGTTCAG+AGG 0.521665 5_2:-22245238 None:intergenic
AAATTAGACACTGATTCCAC+TGG 0.527655 5_2:+22244580 Msa0763260:intron
TCCATGTAAGGAAACCAATA+CGG 0.529805 5_2:-22245288 None:intergenic
CTTCCTTTATAAGCTCTACA+TGG 0.530852 5_2:+22249032 Msa0763260:CDS
TCATCTGAGTTTGGTTGTGA+GGG 0.533395 5_2:-22244724 None:intergenic
AGCACTCCAAACAACGATCC+AGG 0.538270 5_2:-22249160 None:intergenic
CAAGGACAGTCGATCACCAC+TGG 0.538308 5_2:+22246453 Msa0763260:CDS
CTTGAAACAGAGCAAGATCA+AGG 0.538385 5_2:+22243159 Msa0763260:CDS
TATTTCTGAATGTGACAAGT+TGG 0.538780 5_2:+22246810 Msa0763260:CDS
AATGAAAATTGCAAACATCA+AGG 0.541221 5_2:+22246435 Msa0763260:CDS
CATGTAGAGCTTATAAAGGA+AGG 0.543155 5_2:-22249031 None:intergenic
AAACTGAAGACTCTTCCATT+GGG 0.545862 5_2:+22246682 Msa0763260:CDS
ATTGCACCTTGTTGTTGCCA+AGG 0.546973 5_2:+22246890 Msa0763260:CDS
TTCATCTGAGTTTGGTTGTG+AGG 0.548308 5_2:-22244725 None:intergenic
TTGATTGAGCTGAATGTCGC+AGG 0.550317 5_2:-22244375 None:intergenic
TGTCTCGGCTCGGCATTGAA+GGG 0.551623 5_2:+22249304 Msa0763260:CDS
CGCTCAATGTTATCTACTAG+AGG 0.551868 5_2:+22244856 Msa0763260:CDS
TATTTGCCCAAGGAAGCTCT+TGG 0.551985 5_2:+22244289 Msa0763260:CDS
TTGGAAGTTCATCAAGGTGT+GGG 0.552641 5_2:-22245359 None:intergenic
TGAGGTTTGGAAGTTCATCA+AGG 0.556164 5_2:-22245365 None:intergenic
GCCTCGCAAACTATACAAGA+TGG 0.560572 5_2:+22244955 Msa0763260:CDS
GACGAGGAGGAAGAGAGGGC+AGG 0.566547 5_2:+22245186 Msa0763260:CDS
TTTGGAGCCACCGGGTCCGG+CGG 0.567486 5_2:-22244314 None:intergenic
GCAACACTCCTGGTTTCAGA+TGG 0.570915 5_2:-22244673 None:intergenic
CAAACGGAAAACAAAGATCT+CGG 0.572272 5_2:-22244000 None:intergenic
GAGCCATAGTCTACAATGGA+AGG 0.576847 5_2:-22249404 None:intergenic
GGAGAATATATGGAGAAAAG+TGG 0.581477 5_2:-22243928 None:intergenic
ACCTGCCCCAGGAATATTGG+AGG 0.583295 5_2:+22244774 Msa0763260:CDS
TTTCAGATGGAGAACTCCTA+AGG 0.583879 5_2:-22244660 None:intergenic
GAAATTGCTCTCAGTTCAGA+GGG 0.585740 5_2:-22245237 None:intergenic
TTTGGAAGTTCATCAAGGTG+TGG 0.588280 5_2:-22245360 None:intergenic
CTTGGCTCCGCCGGACCCGG+TGG 0.590935 5_2:+22244307 Msa0763260:CDS
CCATAGTGAACGATTAGGAT+CGG 0.591445 5_2:-22243949 None:intergenic
ACTATGACGAGGAGGAAGAG+AGG 0.593165 5_2:+22245181 Msa0763260:CDS
CTACTTGCAACTATACGTCA+TGG 0.594023 5_2:+22246376 Msa0763260:CDS
GGAAGAGCCATAGTCTACAA+TGG 0.596017 5_2:-22249408 None:intergenic
TCCATCTTGTATAGTTTGCG+AGG 0.598825 5_2:-22244956 None:intergenic
GTTGCTTTGTAAACACCCAA+TGG 0.601308 5_2:-22246697 None:intergenic
TGACGTATAGTTGCAAGTAG+TGG 0.601676 5_2:-22246373 None:intergenic
TTCTTCCTCCAATATTCCTG+GGG 0.604548 5_2:-22244779 None:intergenic
GGAGTTCTCCATCTGAAACC+AGG 0.606541 5_2:+22244665 Msa0763260:CDS
GCACTTTCATGCCCTTGGTG+TGG 0.607901 5_2:+22249054 Msa0763260:CDS
ATGTAGAGCTTATAAAGGAA+GGG 0.608816 5_2:-22249030 None:intergenic
CTCTAGTAGATAACATTGAG+CGG 0.609837 5_2:-22244855 None:intergenic
CTATGACGAGGAGGAAGAGA+GGG 0.612509 5_2:+22245182 Msa0763260:CDS
TTGACACCTTGGCAACAACA+AGG 0.622569 5_2:-22246896 None:intergenic
GTGGCATGCAAGTTAGGTCA+GGG 0.622596 5_2:-22246300 None:intergenic
ACCAGCTCTTCATCAAGACT+AGG 0.629858 5_2:-22246328 None:intergenic
TTGAACAAACTTCACACCAA+AGG 0.632501 5_2:-22249371 None:intergenic
TTGCAACTATACGTCATGGA+AGG 0.639070 5_2:+22246380 Msa0763260:CDS
AATGACAGGATGTCATCAGA+TGG 0.649307 5_2:+22243127 None:intergenic
TACACCTCTAACATTAGATG+AGG 0.652806 5_2:+22244832 Msa0763260:CDS
AATTAGACACTGATTCCACT+GGG 0.653345 5_2:+22244581 Msa0763260:intron
CTCACCAAATACCACACCAA+GGG 0.660401 5_2:-22249065 None:intergenic
TTACCAATGAGCACTTTGGG+AGG 0.671003 5_2:-22244401 None:intergenic
CCATAGTCTACAATGGAAGG+AGG 0.673554 5_2:-22249401 None:intergenic
ATTGCTCTCAGTTCAGAGGG+AGG 0.680752 5_2:-22245234 None:intergenic
CCACGAGGATGACTATGACG+AGG 0.684150 5_2:+22245170 Msa0763260:CDS
ACCATGAAGCAACAAGACCA+AGG 0.684532 5_2:-22249347 None:intergenic
TGGTTTGAAGACACATCACA+TGG 0.692830 5_2:+22249246 Msa0763260:intron
TATTTGATCCAATACTCCAG+TGG 0.697950 5_2:-22246469 None:intergenic
GCTCACCAAATACCACACCA+AGG 0.705681 5_2:-22249066 None:intergenic
CGAGGATGACTATGACGAGG+AGG 0.712962 5_2:+22245173 Msa0763260:CDS
CCTCGTCATAGTCATCCTCG+TGG 0.737107 5_2:-22245170 None:intergenic
TATAAAGGAAGGGAGCCAAG+TGG 0.749966 5_2:-22249020 None:intergenic
TGCGTTAAGATGGAACCACG+AGG 0.773331 5_2:+22245155 Msa0763260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTCATTCTAAAAATGTT+TGG + chr5_2:22243452-22243471 Msa0763260:intron 15.0%
!!! TTTTGATTTTATTACTAACT+AGG + chr5_2:22247203-22247222 Msa0763260:intron 15.0%
!! GAAATTTATGATGTATACTA+TGG - chr5_2:22243350-22243369 None:intergenic 20.0%
!!! TTTGGATGAAATATTTTGAT+GGG + chr5_2:22243470-22243489 Msa0763260:intron 20.0%
!! TGAAGAAAGATAAATATGTA+AGG + chr5_2:22243703-22243722 Msa0763260:intron 20.0%
!! AAAGATAAATATGTAAGGAA+TGG + chr5_2:22243708-22243727 Msa0763260:intron 20.0%
!!! AAAAAACAGATCGTATTTTT+GGG - chr5_2:22246052-22246071 None:intergenic 20.0%
!!! AAAAAACGGTAAATCTTTTT+CGG - chr5_2:22246248-22246267 None:intergenic 20.0%
!!! AATATACATGAAGTTTTGAA+AGG - chr5_2:22246276-22246295 None:intergenic 20.0%
!! TACAACTATATATACTGATA+GGG - chr5_2:22247288-22247307 None:intergenic 20.0%
!! TTACAACTATATATACTGAT+AGG - chr5_2:22247289-22247308 None:intergenic 20.0%
!! GAAGAAAATAATAGTGAAAA+AGG - chr5_2:22247503-22247522 None:intergenic 20.0%
!! AGAAAAATGGAAATTGAATT+AGG - chr5_2:22247625-22247644 None:intergenic 20.0%
!!! ATTCTTCAGAAGTTTTTTTT+TGG + chr5_2:22248305-22248324 Msa0763260:intron 20.0%
!! ATTGTATTTCAAACTCAAAT+TGG + chr5_2:22248455-22248474 Msa0763260:intron 20.0%
!! TTGATTCTATATAATTCTTG+AGG + chr5_2:22248730-22248749 Msa0763260:intron 20.0%
!! TACAAAGTGTTATAATTGCA+TGG + chr5_2:22243382-22243401 Msa0763260:intron 25.0%
! ACCTTAATAATATATGTCAG+AGG + chr5_2:22243426-22243445 Msa0763260:intron 25.0%
! CCTTAATAATATATGTCAGA+GGG + chr5_2:22243427-22243446 Msa0763260:intron 25.0%
!!! GTTTGGATGAAATATTTTGA+TGG + chr5_2:22243469-22243488 Msa0763260:intron 25.0%
!!! AGATTTTTGGAGGATTTTAT+AGG - chr5_2:22243618-22243637 None:intergenic 25.0%
!! AATGTTCTTCCTTCAATTTT+TGG - chr5_2:22244335-22244354 None:intergenic 25.0%
! ATCTATTGAAGATATGAGAA+AGG + chr5_2:22244631-22244650 Msa0763260:CDS 25.0%
!! TGATGATGATAATTATCTCA+AGG + chr5_2:22245111-22245130 Msa0763260:intron 25.0%
!!! TTAGAAGTTCTAGAAATTTG+AGG - chr5_2:22245386-22245405 None:intergenic 25.0%
!!! TCAAATTTCTAGAACTTCTA+AGG + chr5_2:22245385-22245404 Msa0763260:CDS 25.0%
! TATATTGCTGATGAAAAAGA+TGG + chr5_2:22245423-22245442 Msa0763260:CDS 25.0%
! AAATAAACAGCAAGAGATAA+AGG + chr5_2:22245636-22245655 Msa0763260:intron 25.0%
! ACACAATAATGTGTTTACTT+CGG + chr5_2:22245669-22245688 Msa0763260:intron 25.0%
! AGAAACTCATATCATTATAG+TGG - chr5_2:22245737-22245756 None:intergenic 25.0%
! ATATGAGTTTCTTTACAAAG+AGG + chr5_2:22245745-22245764 Msa0763260:intron 25.0%
! AAAACACTGTGTAGAAAATA+GGG - chr5_2:22245950-22245969 None:intergenic 25.0%
!! CTGATTTTGTTCCAATTTTT+GGG - chr5_2:22246028-22246047 None:intergenic 25.0%
!! GAAAAAACAGATCGTATTTT+TGG - chr5_2:22246053-22246072 None:intergenic 25.0%
!! AAAAATCAGAGTACGATTTT+TGG - chr5_2:22246154-22246173 None:intergenic 25.0%
! AATGAAAATTGCAAACATCA+AGG + chr5_2:22246435-22246454 Msa0763260:CDS 25.0%
! ACTTGTCATAAAAGATTAGA+AGG + chr5_2:22246510-22246529 Msa0763260:intron 25.0%
!! AGTTTTCAATGTTAAGACTT+TGG - chr5_2:22246579-22246598 None:intergenic 25.0%
!!! TTTTTTATATGAGCAATCTG+TGG - chr5_2:22246943-22246962 None:intergenic 25.0%
! TGAGATAAAATCGTAGTAAA+TGG - chr5_2:22247050-22247069 None:intergenic 25.0%
! AAAGATGACACATCATTATA+AGG - chr5_2:22247186-22247205 None:intergenic 25.0%
!! TGATTTTATTACTAACTAGG+TGG + chr5_2:22247206-22247225 Msa0763260:intron 25.0%
! TAACAAACTCTTTGTATTGA+TGG - chr5_2:22247359-22247378 None:intergenic 25.0%
! AAAAGGATGTGAGAAAATTA+TGG - chr5_2:22247486-22247505 None:intergenic 25.0%
! ATTAGGAAATAGAAGAAGAA+AGG - chr5_2:22247608-22247627 None:intergenic 25.0%
! AATTATTTATAGGAGTGAGT+TGG - chr5_2:22248599-22248618 None:intergenic 25.0%
! CGATAGAGTGAATTATTTAT+AGG - chr5_2:22248609-22248628 None:intergenic 25.0%
! CTTTCATATTCATTGTTTGA+GGG + chr5_2:22248680-22248699 Msa0763260:intron 25.0%
ATTGCCTTGAAGTTTAGTTA+TGG - chr5_2:22243259-22243278 None:intergenic 30.0%
TTATAAGACTTGAGGTATGA+AGG - chr5_2:22243292-22243311 None:intergenic 30.0%
CGAAAATGTTATAAGACTTG+AGG - chr5_2:22243300-22243319 None:intergenic 30.0%
! GTCTTATAACATTTTCGCTT+AGG + chr5_2:22243303-22243322 Msa0763260:intron 30.0%
CCCTCTGACATATATTATTA+AGG - chr5_2:22243430-22243449 None:intergenic 30.0%
!!! GATGAAATATTTTGATGGGA+GGG + chr5_2:22243474-22243493 Msa0763260:intron 30.0%
AGTTTATTTGACATGTTGCT+TGG + chr5_2:22243731-22243750 Msa0763260:intron 30.0%
GATAGATGAAAGAAATAGAG+AGG + chr5_2:22243761-22243780 Msa0763260:intron 30.0%
TTCAATCGGAAAACTTCAAT+TGG - chr5_2:22244098-22244117 None:intergenic 30.0%
TAATGTAAGAAAAGTCTCCT+TGG + chr5_2:22244473-22244492 Msa0763260:intron 30.0%
AAAAATCTTGAAGCTCAAAC+TGG + chr5_2:22244535-22244554 Msa0763260:intron 30.0%
TTGAAGATATGAGAAAGGTT+TGG + chr5_2:22244636-22244655 Msa0763260:CDS 30.0%
TGAAGATATGAGAAAGGTTT+GGG + chr5_2:22244637-22244656 Msa0763260:CDS 30.0%
ATTAGCTCATCAATGTTCTT+AGG - chr5_2:22244887-22244906 None:intergenic 30.0%
GATAATTATCATCATCATCC+AGG - chr5_2:22245108-22245127 None:intergenic 30.0%
TGAGAGCAATTTCTATTGTT+GGG + chr5_2:22245247-22245266 Msa0763260:CDS 30.0%
ATTTCTATTGTTGGGTATGT+AGG + chr5_2:22245255-22245274 Msa0763260:CDS 30.0%
TTAACAAGTGATTCCATGTA+AGG - chr5_2:22245303-22245322 None:intergenic 30.0%
!! AGTTCTAGAAATTTGAGGTT+TGG - chr5_2:22245381-22245400 None:intergenic 30.0%
!! ATTTCTAGAACTTCTAAGGT+TGG + chr5_2:22245389-22245408 Msa0763260:CDS 30.0%
GGTTTATAGAGAATTTCTCT+TGG - chr5_2:22245903-22245922 None:intergenic 30.0%
ATAAACCCAAGTTTGTATGT+TGG + chr5_2:22245916-22245935 Msa0763260:intron 30.0%
CAAAACACTGTGTAGAAAAT+AGG - chr5_2:22245951-22245970 None:intergenic 30.0%
ACACATAATCATCTGATACA+AGG + chr5_2:22245978-22245997 Msa0763260:intron 30.0%
! CCTGATTTTGTTCCAATTTT+TGG - chr5_2:22246029-22246048 None:intergenic 30.0%
CCAAAAATTGGAACAAAATC+AGG + chr5_2:22246026-22246045 Msa0763260:intron 30.0%
ACTTTCCATTCGTAGAAAAT+CGG - chr5_2:22246119-22246138 None:intergenic 30.0%
TTTGAAAGGCAAGCAAAAAA+CGG - chr5_2:22246262-22246281 None:intergenic 30.0%
TTCACCTCTCAAGTATTAAA+TGG + chr5_2:22246614-22246633 Msa0763260:intron 30.0%
TCACCTCTCAAGTATTAAAT+GGG + chr5_2:22246615-22246634 Msa0763260:intron 30.0%
! TATTTCTGAATGTGACAAGT+TGG + chr5_2:22246810-22246829 Msa0763260:CDS 30.0%
!! TCCTAAAGCATTGAAAAATG+TGG + chr5_2:22246840-22246859 Msa0763260:CDS 30.0%
!! TCCACATTTTTCAATGCTTT+AGG - chr5_2:22246844-22246863 None:intergenic 30.0%
!! TAAAGCATTGAAAAATGTGG+AGG + chr5_2:22246843-22246862 Msa0763260:CDS 30.0%
! TCTGCATACTTTGATCATTT+TGG + chr5_2:22246867-22246886 Msa0763260:CDS 30.0%
! ATGTTATCTTGTTGTACCAA+TGG + chr5_2:22247069-22247088 Msa0763260:intron 30.0%
AATTTGTCCCTCATGAATAT+TGG + chr5_2:22247136-22247155 Msa0763260:intron 30.0%
ATTTGTCCCTCATGAATATT+GGG + chr5_2:22247137-22247156 Msa0763260:intron 30.0%
AAAATCCCCAATATTCATGA+GGG - chr5_2:22247146-22247165 None:intergenic 30.0%
ACATCATTATAAGGATGAAG+TGG - chr5_2:22247177-22247196 None:intergenic 30.0%
! CTCTTTGTATTGATGGAAAA+TGG - chr5_2:22247352-22247371 None:intergenic 30.0%
ATAGTGAAAACTGACGAAAA+AGG - chr5_2:22247529-22247548 None:intergenic 30.0%
TTCAACTCGAAATTGGAAAA+AGG - chr5_2:22247932-22247951 None:intergenic 30.0%
AAAATCGTTCAACTCGAAAT+TGG - chr5_2:22247939-22247958 None:intergenic 30.0%
ATTCTTCAGTGAAGATAGAT+TGG + chr5_2:22248055-22248074 Msa0763260:intron 30.0%
TTCTTCTCTTCAATTGTGAT+TGG + chr5_2:22248109-22248128 Msa0763260:intron 30.0%
ATTACAACTGAGAACATGTA+AGG - chr5_2:22248431-22248450 None:intergenic 30.0%
!! TTTGGATATTGACTTTGAGA+TGG + chr5_2:22248644-22248663 Msa0763260:intron 30.0%
CCTCAAACAATGAATATGAA+AGG - chr5_2:22248682-22248701 None:intergenic 30.0%
CCTTTCATATTCATTGTTTG+AGG + chr5_2:22248679-22248698 Msa0763260:intron 30.0%
GAAGACTAAACTGTTTGATT+TGG + chr5_2:22248777-22248796 Msa0763260:intron 30.0%
!! TTTCTTCATCAGTAGTTTTG+TGG + chr5_2:22248960-22248979 Msa0763260:CDS 30.0%
ATGTAGAGCTTATAAAGGAA+GGG - chr5_2:22249033-22249052 None:intergenic 30.0%
!! CAACATGGATTTGTTTTCTA+TGG + chr5_2:22249226-22249245 Msa0763260:intron 30.0%
! AAGAGAAGAAAAGAAGTGTA+AGG - chr5_2:22249432-22249451 None:intergenic 30.0%
ACACTTTGTACTCTGACAAA+AGG - chr5_2:22243372-22243391 None:intergenic 35.0%
!!! GGATGAAATATTTTGATGGG+AGG + chr5_2:22243473-22243492 Msa0763260:intron 35.0%
! AAACTTCGGGATGAGATTTT+TGG - chr5_2:22243631-22243650 None:intergenic 35.0%
TTACAACCCAAACAAACTTC+GGG - chr5_2:22243644-22243663 None:intergenic 35.0%
CTTACAACCCAAACAAACTT+CGG - chr5_2:22243645-22243664 None:intergenic 35.0%
AAAAAACAGTTACATCGGAG+AGG - chr5_2:22243830-22243849 None:intergenic 35.0%
CCGGAAAAAAACAGTTACAT+CGG - chr5_2:22243835-22243854 None:intergenic 35.0%
!!! CCGATGTAACTGTTTTTTTC+CGG + chr5_2:22243832-22243851 Msa0763260:intron 35.0%
GGAGAATATATGGAGAAAAG+TGG - chr5_2:22243931-22243950 None:intergenic 35.0%
GATTAGGATCGGAGAATATA+TGG - chr5_2:22243941-22243960 None:intergenic 35.0%
CAAACGGAAAACAAAGATCT+CGG - chr5_2:22244003-22244022 None:intergenic 35.0%
TTCAGCAGGAAAGTTTCAAA+CGG - chr5_2:22244019-22244038 None:intergenic 35.0%
GGAGAAATTCAAGAAGAAAG+CGG - chr5_2:22244077-22244096 None:intergenic 35.0%
TGAATAAAGCAGAGAGATTC+TGG - chr5_2:22244139-22244158 None:intergenic 35.0%
AATCAGAAAACTTCGACAAG+CGG - chr5_2:22244215-22244234 None:intergenic 35.0%
! TGATTGAGTTTTCCGTTTGA+AGG + chr5_2:22244230-22244249 Msa0763260:intron 35.0%
CTGAAGTAGAAACCTTCAAA+CGG - chr5_2:22244245-22244264 None:intergenic 35.0%
! AAGATTTTTGTCGTCAACGA+CGG - chr5_2:22244524-22244543 None:intergenic 35.0%
!! AAATTAGACACTGATTCCAC+TGG + chr5_2:22244580-22244599 Msa0763260:intron 35.0%
!! AATTAGACACTGATTCCACT+GGG + chr5_2:22244581-22244600 Msa0763260:intron 35.0%
!!! ACGCTTTTTGAAATAGCATC+AGG + chr5_2:22244803-22244822 Msa0763260:CDS 35.0%
TACACCTCTAACATTAGATG+AGG + chr5_2:22244832-22244851 Msa0763260:CDS 35.0%
CTCTAGTAGATAACATTGAG+CGG - chr5_2:22244858-22244877 None:intergenic 35.0%
TCTTGAGATAGATGGATGTT+TGG + chr5_2:22244919-22244938 Msa0763260:CDS 35.0%
! ACAAACGCTTTCTCTTTTTG+TGG + chr5_2:22244988-22245007 Msa0763260:CDS 35.0%
! TTCTCTTTTTGTGGTTAGTG+AGG + chr5_2:22244997-22245016 Msa0763260:intron 35.0%
! TCTCTTTTTGTGGTTAGTGA+GGG + chr5_2:22244998-22245017 Msa0763260:intron 35.0%
CAAGATGTGAAATTTCCAAG+TGG - chr5_2:22245075-22245094 None:intergenic 35.0%
TCAAGGTAAAAATCACCTTC+AGG + chr5_2:22245128-22245147 Msa0763260:intron 35.0%
CTGAGAGCAATTTCTATTGT+TGG + chr5_2:22245246-22245265 Msa0763260:CDS 35.0%
TAGGTAAAACACTTCCGTAT+TGG + chr5_2:22245274-22245293 Msa0763260:CDS 35.0%
TCCATGTAAGGAAACCAATA+CGG - chr5_2:22245291-22245310 None:intergenic 35.0%
!!! CCACGCATCAAGTTTTTTAT+TGG - chr5_2:22245564-22245583 None:intergenic 35.0%
CCAATAAAAAACTTGATGCG+TGG + chr5_2:22245561-22245580 Msa0763260:intron 35.0%
! TCCTAATAGTGCTTTGTTCA+AGG + chr5_2:22245844-22245863 Msa0763260:intron 35.0%
! ACCTTGAACAAAGCACTATT+AGG - chr5_2:22245848-22245867 None:intergenic 35.0%
AGAAGCCAACATACAAACTT+GGG - chr5_2:22245924-22245943 None:intergenic 35.0%
TAGAAGCCAACATACAAACT+TGG - chr5_2:22245925-22245944 None:intergenic 35.0%
TGCAAAGCATACCCAAAAAT+TGG + chr5_2:22246014-22246033 Msa0763260:intron 35.0%
AGTCTGGAAGCTATCAAAAT+TGG - chr5_2:22246188-22246207 None:intergenic 35.0%
AGTGACTCAAAATTGAAGTC+TGG - chr5_2:22246204-22246223 None:intergenic 35.0%
TCATCAAGACTAGGAAAAAG+TGG - chr5_2:22246322-22246341 None:intergenic 35.0%
TATTTGATCCAATACTCCAG+TGG - chr5_2:22246472-22246491 None:intergenic 35.0%
CTTCCCATTTAATACTTGAG+AGG - chr5_2:22246621-22246640 None:intergenic 35.0%
CTCTCAAGTATTAAATGGGA+AGG + chr5_2:22246619-22246638 Msa0763260:intron 35.0%
!!! CAGTTTTGGATTTTCCCTTA+TGG - chr5_2:22246668-22246687 None:intergenic 35.0%
! AATGGAAGAGTCTTCAGTTT+TGG - chr5_2:22246682-22246701 None:intergenic 35.0%
AAAACTGAAGACTCTTCCAT+TGG + chr5_2:22246681-22246700 Msa0763260:CDS 35.0%
AAACTGAAGACTCTTCCATT+GGG + chr5_2:22246682-22246701 Msa0763260:CDS 35.0%
TCAGACAAAGAAGTCATTTG+AGG - chr5_2:22246754-22246773 None:intergenic 35.0%
! AAGTGATTTGAGGTTGTCTA+TGG - chr5_2:22246779-22246798 None:intergenic 35.0%
CCAATTTCTCAAGTGATTTG+AGG - chr5_2:22246789-22246808 None:intergenic 35.0%
CCTCAAATCACTTGAGAAAT+TGG + chr5_2:22246786-22246805 Msa0763260:CDS 35.0%
GGAAAGTAATCCATACATGT+AGG + chr5_2:22246975-22246994 Msa0763260:intron 35.0%
TTCTCAAAGTCCTACATGTA+TGG - chr5_2:22246988-22247007 None:intergenic 35.0%
TTGAGAAATCAAGCCAATGT+AGG + chr5_2:22247001-22247020 Msa0763260:intron 35.0%
TGAGAAATCAAGCCAATGTA+GGG + chr5_2:22247002-22247021 Msa0763260:intron 35.0%
TTTGTCCCTCATGAATATTG+GGG + chr5_2:22247138-22247157 Msa0763260:intron 35.0%
CAAAATCCCCAATATTCATG+AGG - chr5_2:22247147-22247166 None:intergenic 35.0%
! CTCATGAATATTGGGGATTT+TGG + chr5_2:22247145-22247164 Msa0763260:intron 35.0%
TGATACCATGTTAGGAAACA+TGG - chr5_2:22247408-22247427 None:intergenic 35.0%
!! ATTAGCTCTGATACCATGTT+AGG - chr5_2:22247416-22247435 None:intergenic 35.0%
!! CCATTTTTCTCGTTCAATTG+CGG + chr5_2:22247635-22247654 Msa0763260:intron 35.0%
! CATTTTTCTCGTTCAATTGC+GGG + chr5_2:22247636-22247655 Msa0763260:intron 35.0%
AATTACGAACAGAATCACGA+AGG - chr5_2:22247677-22247696 None:intergenic 35.0%
TCGTGATTCTGTTCGTAATT+CGG + chr5_2:22247677-22247696 Msa0763260:intron 35.0%
AATTCAATCGACACGAATCA+AGG - chr5_2:22247768-22247787 None:intergenic 35.0%
AATCAGTGTTCGATCAACAA+AGG - chr5_2:22247902-22247921 None:intergenic 35.0%
AGTTCATCAAATTGCTCACA+AGG + chr5_2:22248021-22248040 Msa0763260:intron 35.0%
! GTTCAGTTTGAAATCTCTGT+TGG + chr5_2:22248085-22248104 Msa0763260:intron 35.0%
AGCAAGTTATCTAGATAGCT+TGG + chr5_2:22248540-22248559 Msa0763260:intron 35.0%
TCGTACTCATTCATCATCTT+TGG + chr5_2:22248626-22248645 Msa0763260:intron 35.0%
!! CTGTTTGATTTGGAGTTTGA+TGG + chr5_2:22248787-22248806 Msa0763260:intron 35.0%
! CTGCTCTCATTTCAATTTTG+TGG + chr5_2:22248863-22248882 Msa0763260:intron 35.0%
ATGATTTAGATGCTTGCTTC+TGG + chr5_2:22248936-22248955 Msa0763260:CDS 35.0%
!!! TGCACAATTGTGCTAGTTTT+TGG + chr5_2:22248984-22249003 Msa0763260:CDS 35.0%
CATGTAGAGCTTATAAAGGA+AGG - chr5_2:22249034-22249053 None:intergenic 35.0%
CTTCCTTTATAAGCTCTACA+TGG + chr5_2:22249032-22249051 Msa0763260:CDS 35.0%
! TTTGGTGAGCTTTATAGTTC+TGG + chr5_2:22249079-22249098 Msa0763260:CDS 35.0%
!! TTATAGTTCTGGATCAGTGT+TGG + chr5_2:22249090-22249109 Msa0763260:CDS 35.0%
TTGGATTGTTGGAAGATTCT+TGG + chr5_2:22249109-22249128 Msa0763260:CDS 35.0%
TTGGATATATTACCTTCCCT+TGG + chr5_2:22249128-22249147 Msa0763260:CDS 35.0%
ATCCAGGAAAAAGAAACCAA+GGG - chr5_2:22249147-22249166 None:intergenic 35.0%
! TGTTTGGAGTGCTTCATTAT+TGG + chr5_2:22249170-22249189 Msa0763260:intron 35.0%
! TGCTTCATTATTGGAAGCAT+CGG + chr5_2:22249179-22249198 Msa0763260:intron 35.0%
!!! ATTATTGGAAGCATCGGTTT+TGG + chr5_2:22249185-22249204 Msa0763260:intron 35.0%
TGTTGATGCATTCAAACCAT+AGG - chr5_2:22249211-22249230 None:intergenic 35.0%
ATGGTTTGAATGCATCAACA+TGG + chr5_2:22249211-22249230 Msa0763260:intron 35.0%
!!! GCTTTTGGTTTTTCTTGTCT+CGG + chr5_2:22249289-22249308 Msa0763260:CDS 35.0%
!!! AAGGGCATCACTTTTATCTT+TGG + chr5_2:22249322-22249341 Msa0763260:CDS 35.0%
!!! CACTTTTATCTTTGGAACCT+TGG + chr5_2:22249330-22249349 Msa0763260:CDS 35.0%
TTGAACAAACTTCACACCAA+AGG - chr5_2:22249374-22249393 None:intergenic 35.0%
CTTGAAACAGAGCAAGATCA+AGG + chr5_2:22243159-22243178 Msa0763260:CDS 40.0%
! TAGCTTGACGATGATTGGTT+CGG + chr5_2:22243182-22243201 Msa0763260:intron 40.0%
TTTAGTTATGGTGGCTGTTG+TGG - chr5_2:22243247-22243266 None:intergenic 40.0%
GCCACCATAACTAAACTTCA+AGG + chr5_2:22243252-22243271 Msa0763260:intron 40.0%
GCCTTGAAGTTTAGTTATGG+TGG - chr5_2:22243256-22243275 None:intergenic 40.0%
! ATCTCATCCCGAAGTTTGTT+TGG + chr5_2:22243634-22243653 Msa0763260:intron 40.0%
! TCTCATCCCGAAGTTTGTTT+GGG + chr5_2:22243635-22243654 Msa0763260:intron 40.0%
CCATAGTGAACGATTAGGAT+CGG - chr5_2:22243952-22243971 None:intergenic 40.0%
! ACTTTCCTGCTGAAGTTTTC+CGG + chr5_2:22244025-22244044 Msa0763260:intron 40.0%
GTGTTACCAATGAGCACTTT+GGG - chr5_2:22244407-22244426 None:intergenic 40.0%
AGTGTTACCAATGAGCACTT+TGG - chr5_2:22244408-22244427 None:intergenic 40.0%
TCGTAAAAACCTATTCCCAG+TGG - chr5_2:22244599-22244618 None:intergenic 40.0%
TTTCAGATGGAGAACTCCTA+AGG - chr5_2:22244663-22244682 None:intergenic 40.0%
!! GAGTGTTGCGATTTTACTGT+TGG + chr5_2:22244687-22244706 Msa0763260:CDS 40.0%
TCATCTGAGTTTGGTTGTGA+GGG - chr5_2:22244727-22244746 None:intergenic 40.0%
TTCATCTGAGTTTGGTTGTG+AGG - chr5_2:22244728-22244747 None:intergenic 40.0%
TTCTTCCTCCAATATTCCTG+GGG - chr5_2:22244782-22244801 None:intergenic 40.0%
CTTCTTCCTCCAATATTCCT+GGG - chr5_2:22244783-22244802 None:intergenic 40.0%
TCTTCTTCCTCCAATATTCC+TGG - chr5_2:22244784-22244803 None:intergenic 40.0%
CGCTCAATGTTATCTACTAG+AGG + chr5_2:22244856-22244875 Msa0763260:CDS 40.0%
CATCTATCTCAAGATGCTTC+AGG - chr5_2:22244913-22244932 None:intergenic 40.0%
! CTGAAGCATCTTGAGATAGA+TGG + chr5_2:22244911-22244930 Msa0763260:CDS 40.0%
! TCCATCTTGTATAGTTTGCG+AGG - chr5_2:22244959-22244978 None:intergenic 40.0%
! CTCTTTTTGTGGTTAGTGAG+GGG + chr5_2:22244999-22245018 Msa0763260:intron 40.0%
TAAGCCTTGCAAGTTCAGTA+AGG - chr5_2:22245039-22245058 None:intergenic 40.0%
ATTATCATCATCATCCAGGC+AGG - chr5_2:22245104-22245123 None:intergenic 40.0%
ATCTTAACGCAAGAACCTGA+AGG - chr5_2:22245146-22245165 None:intergenic 40.0%
! TTCAGGTTCTTGCGTTAAGA+TGG + chr5_2:22245145-22245164 Msa0763260:intron 40.0%
GAAATTGCTCTCAGTTCAGA+GGG - chr5_2:22245240-22245259 None:intergenic 40.0%
AGAAATTGCTCTCAGTTCAG+AGG - chr5_2:22245241-22245260 None:intergenic 40.0%
!! TCCGTATTGGTTTCCTTACA+TGG + chr5_2:22245287-22245306 Msa0763260:CDS 40.0%
TTGGAAGTTCATCAAGGTGT+GGG - chr5_2:22245362-22245381 None:intergenic 40.0%
TTTGGAAGTTCATCAAGGTG+TGG - chr5_2:22245363-22245382 None:intergenic 40.0%
TGAGGTTTGGAAGTTCATCA+AGG - chr5_2:22245368-22245387 None:intergenic 40.0%
! AATTTGAGATTGTGCGAGGA+TGG - chr5_2:22245486-22245505 None:intergenic 40.0%
TCTCAAATTGTCCTAACCTC+AGG + chr5_2:22245497-22245516 Msa0763260:intron 40.0%
TACCAAGCAATCAATCAAGC+AGG + chr5_2:22245594-22245613 Msa0763260:intron 40.0%
CAGCAAGAGATAAAGGAAGA+AGG + chr5_2:22245643-22245662 Msa0763260:intron 40.0%
GTCTAATGATGACCTACTCT+GGG + chr5_2:22245691-22245710 Msa0763260:intron 40.0%
TCTAATGATGACCTACTCTG+GGG + chr5_2:22245692-22245711 Msa0763260:intron 40.0%
AGGATTGAGTCTCTTGATCA+CGG - chr5_2:22245828-22245847 None:intergenic 40.0%
TTCTCTTGGCAACAACACTA+GGG - chr5_2:22245889-22245908 None:intergenic 40.0%
TTTCTCTTGGCAACAACACT+AGG - chr5_2:22245890-22245909 None:intergenic 40.0%
!! CGAATGGAAAGTGTCAATTC+TGG + chr5_2:22246127-22246146 Msa0763260:CDS 40.0%
GAAAAAGTGGCATGCAAGTT+AGG - chr5_2:22246309-22246328 None:intergenic 40.0%
TGACGTATAGTTGCAAGTAG+TGG - chr5_2:22246376-22246395 None:intergenic 40.0%
CTACTTGCAACTATACGTCA+TGG + chr5_2:22246376-22246395 Msa0763260:CDS 40.0%
TTGCAACTATACGTCATGGA+AGG + chr5_2:22246380-22246399 Msa0763260:CDS 40.0%
! GATCTAAAGTCTCTTCCCAA+AGG + chr5_2:22246532-22246551 Msa0763260:intron 40.0%
CTCAGATGATCGAAACCTTT+GGG - chr5_2:22246550-22246569 None:intergenic 40.0%
ACCTGCGTTCTTTAACCATA+AGG + chr5_2:22246650-22246669 Msa0763260:intron 40.0%
CCTGCGTTCTTTAACCATAA+GGG + chr5_2:22246651-22246670 Msa0763260:intron 40.0%
! GTTGCTTTGTAAACACCCAA+TGG - chr5_2:22246700-22246719 None:intergenic 40.0%
GGACAATCATCACCTGTATT+TGG - chr5_2:22246922-22246941 None:intergenic 40.0%
TAAACAGAACCTCCCTACAT+TGG - chr5_2:22247017-22247036 None:intergenic 40.0%
AGACAAACAAACACGACCAT+TGG - chr5_2:22247088-22247107 None:intergenic 40.0%
CTAACTAGGTGGAAATCTGT+AGG + chr5_2:22247217-22247236 Msa0763260:intron 40.0%
ATGAAGTTGTCCCACTTATG+GGG - chr5_2:22247315-22247334 None:intergenic 40.0%
GATGAAGTTGTCCCACTTAT+GGG - chr5_2:22247316-22247335 None:intergenic 40.0%
TGATGAAGTTGTCCCACTTA+TGG - chr5_2:22247317-22247336 None:intergenic 40.0%
AACATGGTATCCATGGATGA+AGG - chr5_2:22247392-22247411 None:intergenic 40.0%
GTTAGGAAACATGGTATCCA+TGG - chr5_2:22247399-22247418 None:intergenic 40.0%
GGATACCATGTTTCCTAACA+TGG + chr5_2:22247400-22247419 Msa0763260:intron 40.0%
ACATGGTATCAGAGCTAATC+TGG + chr5_2:22247417-22247436 Msa0763260:intron 40.0%
TAATCTGGTATCCTCCTTGA+AGG + chr5_2:22247432-22247451 Msa0763260:intron 40.0%
! ATTTTCTCGAGAAAACGCTG+CGG - chr5_2:22247463-22247482 None:intergenic 40.0%
CCGCAATTGAACGAGAAAAA+TGG - chr5_2:22247638-22247657 None:intergenic 40.0%
ACTTGGAGATTTGGGGAAAA+TGG - chr5_2:22247858-22247877 None:intergenic 40.0%
CAAACTCTTCTCATCAGAAC+TGG + chr5_2:22248185-22248204 Msa0763260:intron 40.0%
! ACTTTCCCACTTTGAGTTTG+AGG + chr5_2:22248481-22248500 Msa0763260:intron 40.0%
! CTTTCCCACTTTGAGTTTGA+GGG + chr5_2:22248482-22248501 Msa0763260:intron 40.0%
! TTTCCCACTTTGAGTTTGAG+GGG + chr5_2:22248483-22248502 Msa0763260:intron 40.0%
!! TTGACTTTGAGATGGTTCTG+AGG + chr5_2:22248652-22248671 Msa0763260:intron 40.0%
!! TTGGAGTTTGATGGTGAATC+TGG + chr5_2:22248796-22248815 Msa0763260:intron 40.0%
AGCAGTGTAGTACAAGTGTA+AGG - chr5_2:22248848-22248867 None:intergenic 40.0%
GTGCCATGTAGAGCTTATAA+AGG - chr5_2:22249038-22249057 None:intergenic 40.0%
AGGAAAAAGAAACCAAGGGA+AGG - chr5_2:22249143-22249162 None:intergenic 40.0%
! TTCCCTTGGTTTCTTTTTCC+TGG + chr5_2:22249142-22249161 Msa0763260:CDS 40.0%
GATCCAGGAAAAAGAAACCA+AGG - chr5_2:22249148-22249167 None:intergenic 40.0%
! CTTTTTCCTGGATCGTTGTT+TGG + chr5_2:22249154-22249173 Msa0763260:CDS 40.0%
TGGTTTGAAGACACATCACA+TGG + chr5_2:22249246-22249265 Msa0763260:intron 40.0%
ACATGGCTATGCATCTCTAT+TGG + chr5_2:22249263-22249282 Msa0763260:CDS 40.0%
!!! CATCTCTATTGGCTTGCTTT+TGG + chr5_2:22249274-22249293 Msa0763260:CDS 40.0%
! TTGTTGCTTCATGGTACCTT+TGG + chr5_2:22249355-22249374 Msa0763260:CDS 40.0%
TCTTGTGCTTCTGTTCATGA+TGG + chr5_2:22249448-22249467 Msa0763260:CDS 40.0%
CAAGGTAGCTTGACGATGAT+TGG + chr5_2:22243177-22243196 Msa0763260:intron 45.0%
!! CTTCGGGATGAGATTTTTGG+AGG - chr5_2:22243628-22243647 None:intergenic 45.0%
GTTACATCGGAGAGGTTCAA+TGG - chr5_2:22243822-22243841 None:intergenic 45.0%
GCTCAACTGCTAGAAAACGA+GGG - chr5_2:22243907-22243926 None:intergenic 45.0%
TGCTCAACTGCTAGAAAACG+AGG - chr5_2:22243908-22243927 None:intergenic 45.0%
CCGATCCTAATCGTTCACTA+TGG + chr5_2:22243949-22243968 Msa0763260:CDS 45.0%
CGAAGCCATAGTGAACGATT+AGG - chr5_2:22243957-22243976 None:intergenic 45.0%
AGAAGAAAGCGGAGAGATTC+TGG - chr5_2:22244066-22244085 None:intergenic 45.0%
GAAAGCTTCGAGCGTTCAAT+CGG - chr5_2:22244112-22244131 None:intergenic 45.0%
CAAGCGGAGAGAATCTGAAA+CGG - chr5_2:22244199-22244218 None:intergenic 45.0%
CGCTTCAGATTATTTGCCCA+AGG + chr5_2:22244279-22244298 Msa0763260:intron 45.0%
TATTTGCCCAAGGAAGCTCT+TGG + chr5_2:22244289-22244308 Msa0763260:CDS 45.0%
!!! CTTCAATTTTTGGAGCCACC+GGG - chr5_2:22244325-22244344 None:intergenic 45.0%
!!! CCTTCAATTTTTGGAGCCAC+CGG - chr5_2:22244326-22244345 None:intergenic 45.0%
TTGATTGAGCTGAATGTCGC+AGG - chr5_2:22244378-22244397 None:intergenic 45.0%
TTACCAATGAGCACTTTGGG+AGG - chr5_2:22244404-22244423 None:intergenic 45.0%
ACACACGCAGAATACGAAGT+AGG + chr5_2:22244443-22244462 Msa0763260:intron 45.0%
! CTTCTCTCTGGAGAGTTAAG+CGG - chr5_2:22244499-22244518 None:intergenic 45.0%
ATCTTGAAGCTCAAACTGGC+TGG + chr5_2:22244539-22244558 Msa0763260:intron 45.0%
TCTTGAAGCTCAAACTGGCT+GGG + chr5_2:22244540-22244559 Msa0763260:intron 45.0%
!! ACACTGATTCCACTGGGAAT+AGG + chr5_2:22244587-22244606 Msa0763260:CDS 45.0%
ATGAGAAAGGTTTGGGCCTT+AGG + chr5_2:22244644-22244663 Msa0763260:CDS 45.0%
CAGTAAAATCGCAACACTCC+TGG - chr5_2:22244686-22244705 None:intergenic 45.0%
! GCGATTTTACTGTTGGTCGA+AGG + chr5_2:22244694-22244713 Msa0763260:CDS 45.0%
CTTGTGCGTTCATCTGAGTT+TGG - chr5_2:22244736-22244755 None:intergenic 45.0%
TCAGATGAACGCACAAGTCT+GGG + chr5_2:22244739-22244758 Msa0763260:CDS 45.0%
GCCTCGCAAACTATACAAGA+TGG + chr5_2:22244955-22244974 Msa0763260:CDS 45.0%
GTGACCTTACTGAACTTGCA+AGG + chr5_2:22245032-22245051 Msa0763260:intron 45.0%
GCAAGGCTTAACAACTTACG+AGG + chr5_2:22245049-22245068 Msa0763260:intron 45.0%
TAACAACTTACGAGGCCACT+TGG + chr5_2:22245057-22245076 Msa0763260:intron 45.0%
! GGACAATTTGAGATTGTGCG+AGG - chr5_2:22245490-22245509 None:intergenic 45.0%
ATTGTCCTAACCTCAGGAGA+TGG + chr5_2:22245503-22245522 Msa0763260:intron 45.0%
! ACATTTTCCACCATCTCCTG+AGG - chr5_2:22245516-22245535 None:intergenic 45.0%
CACCTGCTTGATTGATTGCT+TGG - chr5_2:22245599-22245618 None:intergenic 45.0%
GGTCTAATGATGACCTACTC+TGG + chr5_2:22245690-22245709 Msa0763260:intron 45.0%
CTAATGATGACCTACTCTGG+GGG + chr5_2:22245693-22245712 Msa0763260:intron 45.0%
GGATTGAGTCTCTTGATCAC+GGG - chr5_2:22245827-22245846 None:intergenic 45.0%
TTGGCAACAACACTAGGGTT+GGG - chr5_2:22245884-22245903 None:intergenic 45.0%
TAGAAAATCGGAGCACGATC+TGG - chr5_2:22246107-22246126 None:intergenic 45.0%
! GTGCTCCGATTTTCTACGAA+TGG + chr5_2:22246111-22246130 Msa0763260:CDS 45.0%
!! TCCTAGTCTTGATGAAGAGC+TGG + chr5_2:22246327-22246346 Msa0763260:CDS 45.0%
ACCAGCTCTTCATCAAGACT+AGG - chr5_2:22246331-22246350 None:intergenic 45.0%
! TGATGAAGAGCTGGTTCTCA+TGG + chr5_2:22246336-22246355 Msa0763260:CDS 45.0%
! GATGAAGAGCTGGTTCTCAT+GGG + chr5_2:22246337-22246356 Msa0763260:CDS 45.0%
GCTCAGATGATCGAAACCTT+TGG - chr5_2:22246551-22246570 None:intergenic 45.0%
CCCTTATGGTTAAAGAACGC+AGG - chr5_2:22246654-22246673 None:intergenic 45.0%
!! ATTGCACCTTGTTGTTGCCA+AGG + chr5_2:22246890-22246909 Msa0763260:CDS 45.0%
TTGACACCTTGGCAACAACA+AGG - chr5_2:22246899-22246918 None:intergenic 45.0%
CCTGTATTTGGTTGACACCT+TGG - chr5_2:22246910-22246929 None:intergenic 45.0%
! CCAAGGTGTCAACCAAATAC+AGG + chr5_2:22246907-22246926 Msa0763260:CDS 45.0%
GAAATCAAGCCAATGTAGGG+AGG + chr5_2:22247005-22247024 Msa0763260:intron 45.0%
GTGGAAATCTGTAGGTTGCA+CGG + chr5_2:22247225-22247244 Msa0763260:intron 45.0%
AGTTGTAACCTCCCCATAAG+TGG + chr5_2:22247301-22247320 Msa0763260:intron 45.0%
GTTGTAACCTCCCCATAAGT+GGG + chr5_2:22247302-22247321 Msa0763260:intron 45.0%
! GCTTTTCTCTCCTTCATCCA+TGG + chr5_2:22247379-22247398 Msa0763260:intron 45.0%
CGAATCAAGGACAGAAAGCA+AGG - chr5_2:22247755-22247774 None:intergenic 45.0%
ATCGCGGAACTTGGAGATTT+GGG - chr5_2:22247866-22247885 None:intergenic 45.0%
AATCGCGGAACTTGGAGATT+TGG - chr5_2:22247867-22247886 None:intergenic 45.0%
AGGACAAGAACTCAGAATCG+CGG - chr5_2:22247882-22247901 None:intergenic 45.0%
! ATCAGTAGTTTAGAAGCGCG+TGG + chr5_2:22248154-22248173 Msa0763260:intron 45.0%
! TTCCCACTTTGAGTTTGAGG+GGG + chr5_2:22248484-22248503 Msa0763260:intron 45.0%
GGCAGATTGTCTTTACCACT+TGG + chr5_2:22249005-22249024 Msa0763260:CDS 45.0%
TATAAAGGAAGGGAGCCAAG+TGG - chr5_2:22249023-22249042 None:intergenic 45.0%
CTCACCAAATACCACACCAA+GGG - chr5_2:22249068-22249087 None:intergenic 45.0%
! CTGGATCAGTGTTGGATTGT+TGG + chr5_2:22249098-22249117 Msa0763260:CDS 45.0%
! TGGTTTTTCTTGTCTCGGCT+CGG + chr5_2:22249294-22249313 Msa0763260:CDS 45.0%
!! ACCTTGGTCTTGTTGCTTCA+TGG + chr5_2:22249346-22249365 Msa0763260:CDS 45.0%
ACCATGAAGCAACAAGACCA+AGG - chr5_2:22249350-22249369 None:intergenic 45.0%
CCATAGTCTACAATGGAAGG+AGG - chr5_2:22249404-22249423 None:intergenic 45.0%
CCTCCTTCCATTGTAGACTA+TGG + chr5_2:22249401-22249420 Msa0763260:CDS 45.0%
GAGCCATAGTCTACAATGGA+AGG - chr5_2:22249407-22249426 None:intergenic 45.0%
GGAAGAGCCATAGTCTACAA+TGG - chr5_2:22249411-22249430 None:intergenic 45.0%
!!! TCTTTATTTTAAAATATATT+TGG - chr5_2:22243589-22243608 None:intergenic 5.0%
!! TATAAAAAATAAATTATTCA+TGG + chr5_2:22246954-22246973 Msa0763260:intron 5.0%
! TGGTTCGGCTGAGTTACTTG+AGG + chr5_2:22243197-22243216 Msa0763260:intron 50.0%
GGTTCGGCTGAGTTACTTGA+GGG + chr5_2:22243198-22243217 Msa0763260:intron 50.0%
CTGTTGTGGTTTCTGTGGGA+AGG - chr5_2:22243233-22243252 None:intergenic 50.0%
GTGGCTGTTGTGGTTTCTGT+GGG - chr5_2:22243237-22243256 None:intergenic 50.0%
GGAGTAGTGAGAGAAGTCAC+CGG - chr5_2:22243854-22243873 None:intergenic 50.0%
TAGAGCCGGAAAACTTCAGC+AGG - chr5_2:22244033-22244052 None:intergenic 50.0%
CTGGATCTGAGAGTTAGAGC+CGG - chr5_2:22244047-22244066 None:intergenic 50.0%
CCGGTGGCTCCAAAAATTGA+AGG + chr5_2:22244323-22244342 Msa0763260:CDS 50.0%
! CTACCTCCCAAAGTGCTCAT+TGG + chr5_2:22244398-22244417 Msa0763260:CDS 50.0%
CGCTTAACTCTCCAGAGAGA+AGG + chr5_2:22244497-22244516 Msa0763260:intron 50.0%
! GGAGTTCTCCATCTGAAACC+AGG + chr5_2:22244665-22244684 Msa0763260:CDS 50.0%
GCAACACTCCTGGTTTCAGA+TGG - chr5_2:22244676-22244695 None:intergenic 50.0%
CTCAGATGAACGCACAAGTC+TGG + chr5_2:22244738-22244757 Msa0763260:CDS 50.0%
GCGGCCTCATCTAATGTTAG+AGG - chr5_2:22244839-22244858 None:intergenic 50.0%
! GTTAGTGAGGGGTACAACGT+GGG + chr5_2:22245010-22245029 Msa0763260:intron 50.0%
ACATCTTGAACGATCCTGCC+TGG + chr5_2:22245087-22245106 Msa0763260:intron 50.0%
TGCGTTAAGATGGAACCACG+AGG + chr5_2:22245155-22245174 Msa0763260:CDS 50.0%
ACTATGACGAGGAGGAAGAG+AGG + chr5_2:22245181-22245200 Msa0763260:CDS 50.0%
CTATGACGAGGAGGAAGAGA+GGG + chr5_2:22245182-22245201 Msa0763260:CDS 50.0%
ATTGCTCTCAGTTCAGAGGG+AGG - chr5_2:22245237-22245256 None:intergenic 50.0%
TTCCACCATCTCCTGAGGTT+AGG - chr5_2:22245511-22245530 None:intergenic 50.0%
GCTGGGACTTGGGTAGAATT+AGG - chr5_2:22245799-22245818 None:intergenic 50.0%
AGTCTCTTGATCACGGGAAG+AGG - chr5_2:22245821-22245840 None:intergenic 50.0%
CTTGGCAACAACACTAGGGT+TGG - chr5_2:22245885-22245904 None:intergenic 50.0%
GGAGCACGATCTGGCAAAAT+CGG - chr5_2:22246098-22246117 None:intergenic 50.0%
GTGGCATGCAAGTTAGGTCA+GGG - chr5_2:22246303-22246322 None:intergenic 50.0%
AGTGGCATGCAAGTTAGGTC+AGG - chr5_2:22246304-22246323 None:intergenic 50.0%
GTCGATCACCACTGGAGTAT+TGG + chr5_2:22246461-22246480 Msa0763260:intron 50.0%
AAGTTGTCCCACTTATGGGG+AGG - chr5_2:22247312-22247331 None:intergenic 50.0%
CTGCGGAAAATCCTTCAAGG+AGG - chr5_2:22247446-22247465 None:intergenic 50.0%
ACGCTGCGGAAAATCCTTCA+AGG - chr5_2:22247449-22247468 None:intergenic 50.0%
TCGCGGAACTTGGAGATTTG+GGG - chr5_2:22247865-22247884 None:intergenic 50.0%
GAACTCAGAATCGCGGAACT+TGG - chr5_2:22247875-22247894 None:intergenic 50.0%
GTCCCCCTCAAACTCAAAGT+GGG - chr5_2:22248489-22248508 None:intergenic 50.0%
AGTCCCCCTCAAACTCAAAG+TGG - chr5_2:22248490-22248509 None:intergenic 50.0%
ACATGGCACTTTCATGCCCT+TGG + chr5_2:22249049-22249068 Msa0763260:CDS 50.0%
! CATGCCCTTGGTGTGGTATT+TGG + chr5_2:22249061-22249080 Msa0763260:CDS 50.0%
GCTCACCAAATACCACACCA+AGG - chr5_2:22249069-22249088 None:intergenic 50.0%
AGCACTCCAAACAACGATCC+AGG - chr5_2:22249163-22249182 None:intergenic 50.0%
!!! GAAGCATCGGTTTTGGCCTA+TGG + chr5_2:22249192-22249211 Msa0763260:intron 50.0%
GGTGGCTGTTGTGGTTTCTG+TGG - chr5_2:22243238-22243257 None:intergenic 55.0%
CTCACTACTCCGACGTGCTT+CGG + chr5_2:22243863-22243882 Msa0763260:intron 55.0%
!!! ATTTTTGGAGCCACCGGGTC+CGG - chr5_2:22244320-22244339 None:intergenic 55.0%
TCTGGAGAGTTAAGCGGCCA+AGG - chr5_2:22244493-22244512 None:intergenic 55.0%
TCAACGACGGACCTTCTCTC+TGG - chr5_2:22244511-22244530 None:intergenic 55.0%
TGCACCTGCCCCAGGAATAT+TGG + chr5_2:22244771-22244790 Msa0763260:CDS 55.0%
ACCTGCCCCAGGAATATTGG+AGG + chr5_2:22244774-22244793 Msa0763260:CDS 55.0%
TCCTCCAATATTCCTGGGGC+AGG - chr5_2:22244778-22244797 None:intergenic 55.0%
! GGTTAGTGAGGGGTACAACG+TGG + chr5_2:22245009-22245028 Msa0763260:intron 55.0%
CCTCGTCATAGTCATCCTCG+TGG - chr5_2:22245173-22245192 None:intergenic 55.0%
CCACGAGGATGACTATGACG+AGG + chr5_2:22245170-22245189 Msa0763260:CDS 55.0%
CGAGGATGACTATGACGAGG+AGG + chr5_2:22245173-22245192 Msa0763260:CDS 55.0%
GTCCTAACCTCAGGAGATGG+TGG + chr5_2:22245506-22245525 Msa0763260:intron 55.0%
CTTGATCACGGGAAGAGGCT+GGG - chr5_2:22245816-22245835 None:intergenic 55.0%
TCTTGATCACGGGAAGAGGC+TGG - chr5_2:22245817-22245836 None:intergenic 55.0%
CAAGGACAGTCGATCACCAC+TGG + chr5_2:22246453-22246472 Msa0763260:CDS 55.0%
GCACTTTCATGCCCTTGGTG+TGG + chr5_2:22249054-22249073 Msa0763260:CDS 55.0%
!! TTGTCTCGGCTCGGCATTGA+AGG + chr5_2:22249303-22249322 Msa0763260:CDS 55.0%
!! TGTCTCGGCTCGGCATTGAA+GGG + chr5_2:22249304-22249323 Msa0763260:CDS 55.0%
AAACCCACGCCGAAGCACGT+CGG - chr5_2:22243875-22243894 None:intergenic 60.0%
GCGGAGCCAAGAGCTTCCTT+GGG - chr5_2:22244298-22244317 None:intergenic 60.0%
AAGGAAGCTCTTGGCTCCGC+CGG + chr5_2:22244298-22244317 Msa0763260:CDS 60.0%
GAAGCTTATGCACCTGCCCC+AGG + chr5_2:22244763-22244782 Msa0763260:CDS 60.0%
ACGGGAAGAGGCTGGGACTT+GGG - chr5_2:22245809-22245828 None:intergenic 60.0%
TACTCCGACGTGCTTCGGCG+TGG + chr5_2:22243868-22243887 Msa0763260:intron 65.0%
ACTCCGACGTGCTTCGGCGT+GGG + chr5_2:22243869-22243888 Msa0763260:intron 65.0%
GGCGGAGCCAAGAGCTTCCT+TGG - chr5_2:22244299-22244318 None:intergenic 65.0%
GACGAGGAGGAAGAGAGGGC+AGG + chr5_2:22245186-22245205 Msa0763260:CDS 65.0%
GCTGCTCTCTCCCCCAGAGT+AGG - chr5_2:22245706-22245725 None:intergenic 65.0%
CACGGGAAGAGGCTGGGACT+TGG - chr5_2:22245810-22245829 None:intergenic 65.0%
! TTTGGAGCCACCGGGTCCGG+CGG - chr5_2:22244317-22244336 None:intergenic 70.0%
GCTCTTGGCTCCGCCGGACC+CGG + chr5_2:22244304-22244323 Msa0763260:CDS 75.0%
! CTTGGCTCCGCCGGACCCGG+TGG + chr5_2:22244307-22244326 Msa0763260:CDS 80.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 22243136 22249474 22243136 ID=Msa0763260;Name=Msa0763260
chr5_2 mRNA 22243136 22249474 22243136 ID=Msa0763260-mRNA-1;Parent=Msa0763260;Name=Msa0763260-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0|0|0.27|1|1|11|0|729
chr5_2 exon 22243136 22243180 22243136 ID=Msa0763260-mRNA-1:exon:9170;Parent=Msa0763260-mRNA-1
chr5_2 exon 22243918 22244010 22243918 ID=Msa0763260-mRNA-1:exon:9171;Parent=Msa0763260-mRNA-1
chr5_2 exon 22244287 22244460 22244287 ID=Msa0763260-mRNA-1:exon:9172;Parent=Msa0763260-mRNA-1
chr5_2 exon 22244587 22245009 22244587 ID=Msa0763260-mRNA-1:exon:9173;Parent=Msa0763260-mRNA-1
chr5_2 exon 22245150 22245444 22245150 ID=Msa0763260-mRNA-1:exon:9174;Parent=Msa0763260-mRNA-1
chr5_2 exon 22246081 22246148 22246081 ID=Msa0763260-mRNA-1:exon:9175;Parent=Msa0763260-mRNA-1
chr5_2 exon 22246232 22246476 22246232 ID=Msa0763260-mRNA-1:exon:9176;Parent=Msa0763260-mRNA-1
chr5_2 exon 22246672 22246928 22246672 ID=Msa0763260-mRNA-1:exon:9177;Parent=Msa0763260-mRNA-1
chr5_2 exon 22248362 22248445 22248362 ID=Msa0763260-mRNA-1:exon:9178;Parent=Msa0763260-mRNA-1
chr5_2 exon 22248891 22249177 22248891 ID=Msa0763260-mRNA-1:exon:9179;Parent=Msa0763260-mRNA-1
chr5_2 exon 22249256 22249474 22249256 ID=Msa0763260-mRNA-1:exon:9180;Parent=Msa0763260-mRNA-1
chr5_2 CDS 22243136 22243180 22243136 ID=Msa0763260-mRNA-1:cds;Parent=Msa0763260-mRNA-1
chr5_2 CDS 22243918 22244010 22243918 ID=Msa0763260-mRNA-1:cds;Parent=Msa0763260-mRNA-1
chr5_2 CDS 22244287 22244460 22244287 ID=Msa0763260-mRNA-1:cds;Parent=Msa0763260-mRNA-1
chr5_2 CDS 22244587 22245009 22244587 ID=Msa0763260-mRNA-1:cds;Parent=Msa0763260-mRNA-1
chr5_2 CDS 22245150 22245444 22245150 ID=Msa0763260-mRNA-1:cds;Parent=Msa0763260-mRNA-1
chr5_2 CDS 22246081 22246148 22246081 ID=Msa0763260-mRNA-1:cds;Parent=Msa0763260-mRNA-1
chr5_2 CDS 22246232 22246476 22246232 ID=Msa0763260-mRNA-1:cds;Parent=Msa0763260-mRNA-1
chr5_2 CDS 22246672 22246928 22246672 ID=Msa0763260-mRNA-1:cds;Parent=Msa0763260-mRNA-1
chr5_2 CDS 22248362 22248445 22248362 ID=Msa0763260-mRNA-1:cds;Parent=Msa0763260-mRNA-1
chr5_2 CDS 22248891 22249177 22248891 ID=Msa0763260-mRNA-1:cds;Parent=Msa0763260-mRNA-1
chr5_2 CDS 22249256 22249474 22249256 ID=Msa0763260-mRNA-1:cds;Parent=Msa0763260-mRNA-1
Gene Sequence

>Msa0763260

ATGTCATCAGATGGTTTGAAATGCTTGAAACAGAGCAAGATCAAGCAGTTGAGCACCACTTTTCTCCATATATTCTCCGATCCTAATCGTTCACTATGGCTTCGAAGCTTTTCTGAACGTCGCAGCTCCGAGATCTTTATTATTTGCCCAAGGAAGCTCTTGGCTCCGCCGGACCCGGTGGCTCCAAAAATTGAAGGAAGAACATTTGCTCAAGCTGTTTTATCTACCTGCGACATTCAGCTCAATCAACTACCTCCCAAAGTGCTCATTGGTAACACTGTGAACATCAAGATTACACACGCAGAATACGAAACACTGATTCCACTGGGAATAGGTTTTTACGAGTTCAAGTTTAAATCTATTGAAGATATGAGAAAGGTTTGGGCCTTAGGAGTTCTCCATCTGAAACCAGGAGTGTTGCGATTTTACTGTTGGTCGAAGGATTTCAACCCTCACAACCAAACTCAGATGAACGCACAAGTCTGGGTGAAGCTTATGCACCTGCCCCAGGAATATTGGAGGAAGAAGACGCTTTTTGAAATAGCATCAGGAATAAGTACACCTCTAACATTAGATGAGGCCGCTCAATGTTATCTACTAGAGGAATTACCTAAGAACATTGATGAGCTAATTAACCTGAAGCATCTTGAGATAGATGGATGTTTGGCTATCATTCACATGCCTCGCAAACTATACAAGATGGAAAGTTCTCTACAAACGCTTTCTCTTTTTGTGGTTCTTGCGTTAAGATGGAACCACGAGGATGACTATGACGAGGAGGAAGAGAGGGCAGGCGAAGATACACTTGCTTGTCTTGCGCCTCCCTCTGAACTGAGAGCAATTTCTATTGTTGGGTATGTAGGTAAAACACTTCCGTATTGGTTTCCTTACATGGAATCACTTGTTAAGTTAAGCTTGTATGATTGTACAAGTTGCATATTTCTCCCACACCTTGATGAACTTCCAAACCTCAAATTTCTAGAACTTCTAAGGTTGGAGAAATTGCAATATATTGCTGATGAAAAAGATGCGCAAAATCGTGCTCCGATTTTGCCAGATCGTGCTCCGATTTTCTACGAATGGAAAGTGTCAATTCTGAAAATGCATAAAACCGAAAAAGATTTACCGTTTTTTGCTTGCCTTTCAAAACTTCATGTATATTACTGCCCTGACCTAACTTGCATGCCACTTTTTCCTAGTCTTGATGAAGAGCTGGTTCTCATGGGTTCAAGCATGCAGCCACTACTTGCAACTATACGTCATGGAAGGAGAAAGTGTATTAAGTTTACTAAACTCAAGTCAATGAAAATTGCAAACATCAAGGACAGTCGATCACCACTGGAGGAAAATCCAAAACTGAAGACTCTTCCATTGGGTGTTTACAAAGCAACATCTCTTCAAGATCTTCAGCTTCATAACTGTCCTCAAATGACTTCTTTGTCTGAAACCATAGACAACCTCAAATCACTTGAGAAATTGGTTATTTCTGAATGTGACAAGTTGGCTTCGCTTCCTAAAGCATTGAAAAATGTGGAGGATCTGCATACTTTGATCATTTTGGATTGCACCTTGTTGTTGCCAAGGTGTCAACCAAATACAGAAGCTGTTTTTGTTTCTACTGCAACTCAGAAGCAGAAACGCGTAAGAAACACAGAGTCTGAAGCTGCCTTACATGTTCTCAGTTCACATTGTTGTATGCTGCTCTTAGTTGTTTGTTTGTTGATTGAATATGATTTAGATGCTTGCTTCTGGCTTTCTTCATCAGTAGTTTTGTGGATGCACAATTGTGCTAGTTTTTGGCAGATTGTCTTTACCACTTGGCTCCCTTCCTTTATAAGCTCTACATGGCACTTTCATGCCCTTGGTGTGGTATTTGGTGAGCTTTATAGTTCTGGATCAGTGTTGGATTGTTGGAAGATTCTTGGATATATTACCTTCCCTTGGTTTCTTTTTCCTGGATCGTTGTTTGGAACACATCACATGGCTATGCATCTCTATTGGCTTGCTTTTGGTTTTTCTTGTCTCGGCTCGGCATTGAAGGGCATCACTTTTATCTTTGGAACCTTGGTCTTGTTGCTTCATGGTACCTTTGGTGTGAAGTTTGTTCAACATATGACCTCCTTCCATTGTAGACTATGGCTCTTCCTTACACTTCTTTTCTTCTCTTGTGCTTCTGTTCATGATGGTTAA
Protein sequence

>Msa0763260

MSSDGLKCLKQSKIKQLSTTFLHIFSDPNRSLWLRSFSERRSSEIFIICPRKLLAPPDPVAPKIEGRTFAQAVLSTCDIQLNQLPPKVLIGNTVNIKITHAEYETLIPLGIGFYEFKFKSIEDMRKVWALGVLHLKPGVLRFYCWSKDFNPHNQTQMNAQVWVKLMHLPQEYWRKKTLFEIASGISTPLTLDEAAQCYLLEELPKNIDELINLKHLEIDGCLAIIHMPRKLYKMESSLQTLSLFVVLALRWNHEDDYDEEEERAGEDTLACLAPPSELRAISIVGYVGKTLPYWFPYMESLVKLSLYDCTSCIFLPHLDELPNLKFLELLRLEKLQYIADEKDAQNRAPILPDRAPIFYEWKVSILKMHKTEKDLPFFACLSKLHVYYCPDLTCMPLFPSLDEELVLMGSSMQPLLATIRHGRRKCIKFTKLKSMKIANIKDSRSPLEENPKLKTLPLGVYKATSLQDLQLHNCPQMTSLSETIDNLKSLEKLVISECDKLASLPKALKNVEDLHTLIILDCTLLLPRCQPNTEAVFVSTATQKQKRVRNTESEAALHVLSSHCCMLLLVVCLLIEYDLDACFWLSSSVVLWMHNCASFWQIVFTTWLPSFISSTWHFHALGVVFGELYSSGSVLDCWKILGYITFPWFLFPGSLFGTHHMAMHLYWLAFGFSCLGSALKGITFIFGTLVLLLHGTFGVKFVQHMTSFHCRLWLFLTLLFFSCASVHDG*