Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0775700 | A0A396HT34 | 90.312 | 320 | 22 | 5 | 25 | 338 | 27 | 343 | 1.54e-180 | 512 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0110970 | Msa0775700 | 0.813633 | 2.318477e-51 | -8.615850e-47 |
| Msa0641360 | Msa0775700 | 0.801221 | 9.972822e-49 | -8.615850e-47 |
| Msa0775700 | Msa0819680 | 0.806050 | 9.929866e-50 | -8.615850e-47 |
| Msa0775700 | Msa0826130 | 0.800086 | 1.699819e-48 | -8.615850e-47 |
| Msa0775700 | Msa0896540 | 0.814415 | 1.558438e-51 | -8.615850e-47 |
| Msa0775700 | Msa0936410 | 0.809481 | 1.852373e-50 | -8.615850e-47 |
| Msa0775700 | Msa0961690 | 0.806923 | 6.498512e-50 | -8.615850e-47 |
| Msa0775700 | Msa0973250 | 0.824527 | 7.689800e-54 | -8.615850e-47 |
| Msa0775700 | Msa0999300 | 0.801342 | 9.418986e-49 | -8.615850e-47 |
| Msa0775700 | Msa1037910 | 0.821101 | 4.827961e-53 | -8.615850e-47 |
| Msa0775700 | Msa1139810 | 0.803302 | 3.719782e-49 | -8.615850e-47 |
| Msa0775700 | Msa1169990 | 0.803860 | 2.849224e-49 | -8.615850e-47 |
| Msa0775700 | Msa1374550 | 0.819957 | 8.837924e-53 | -8.615850e-47 |
| Msa0775700 | Msa1421550 | 0.814569 | 1.441131e-51 | -8.615850e-47 |
| Msa0775700 | Msa1430240 | 0.807211 | 5.647461e-50 | -8.615850e-47 |
| Msa0197930 | Msa0775700 | 0.816422 | 5.576262e-52 | -8.615850e-47 |
| Msa0392420 | Msa0775700 | 0.808728 | 2.685969e-50 | -8.615850e-47 |
| Msa0392460 | Msa0775700 | 0.801839 | 7.451559e-49 | -8.615850e-47 |
| Msa0392490 | Msa0775700 | 0.806510 | 7.943862e-50 | -8.615850e-47 |
| Msa0239570 | Msa0775700 | 0.805646 | 1.207029e-49 | -8.615850e-47 |
| Msa0287650 | Msa0775700 | 0.804853 | 1.769662e-49 | -8.615850e-47 |
| Msa0487570 | Msa0775700 | 0.805776 | 1.133959e-49 | -8.615850e-47 |
| Msa0487630 | Msa0775700 | 0.811571 | 6.548666e-51 | -8.615850e-47 |
| Msa0527550 | Msa0775700 | 0.803238 | 3.833996e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0775700 | MtrunA17_Chr5g0430231 | 90.312 | 320 | 22 | 5 | 25 | 338 | 27 | 343 | 0.0 | 512 |
| Msa0775700 | MtrunA17_Chr3g0105161 | 35.294 | 391 | 163 | 12 | 26 | 335 | 27 | 408 | 2.30e-47 | 164 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 32 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAATGAGTGTGTAGATATT+TGG | 0.183054 | 5_2:-52825267 | Msa0775700:CDS |
| TGGTGTAGTTGCAAGGTTAA+TGG | 0.255423 | 5_2:-52826261 | Msa0775700:CDS |
| AAGAGTTTGTTTAAGGAAGT+TGG | 0.287665 | 5_2:-52825984 | Msa0775700:CDS |
| GGTGTAGTTGCAAGGTTAAT+GGG | 0.347018 | 5_2:-52826260 | Msa0775700:CDS |
| TGAAGAAGAGAGAAAAGTTA+AGG | 0.378603 | 5_2:-52825338 | Msa0775700:CDS |
| TCAAAATCAAAGACAGAAAC+AGG | 0.397845 | 5_2:+52825870 | None:intergenic |
| GAGCATGATGTTTCTGGAAC+AGG | 0.399353 | 5_2:-52825849 | Msa0775700:intron |
| AGTTGCAAGGTTAATGGGAT+TGG | 0.401363 | 5_2:-52826255 | Msa0775700:CDS |
| CAAGCTAGTTGATGATGAAT+TGG | 0.402114 | 5_2:-52825233 | Msa0775700:CDS |
| CAAAGGAAGAAGAAAAGAAA+AGG | 0.402477 | 5_2:-52826075 | Msa0775700:CDS |
| GAAATTATAGTTCTAGTAGT+AGG | 0.402687 | 5_2:+52826296 | None:intergenic |
| GTTAATGGGATTGGATTCAA+TGG | 0.432909 | 5_2:-52826246 | Msa0775700:CDS |
| ATTGAGAACAATTTGAATGA+AGG | 0.441642 | 5_2:-52825313 | Msa0775700:CDS |
| CTTCTTCTGGTGTAGTTGCA+AGG | 0.448678 | 5_2:-52826268 | Msa0775700:CDS |
| TTGTTTAAGGAAGTTGGAAA+TGG | 0.464241 | 5_2:-52825978 | Msa0775700:CDS |
| ATTATAGTTCTAGTAGTAGG+AGG | 0.474477 | 5_2:+52826299 | None:intergenic |
| TTTGTGATGTTGATATGAGT+TGG | 0.497412 | 5_2:-52825432 | Msa0775700:CDS |
| GTGAATTGCATGAAGTAAAG+AGG | 0.512937 | 5_2:-52825201 | Msa0775700:CDS |
| TTGCAATGTGTAAGTGAACT+TGG | 0.522297 | 5_2:+52826197 | None:intergenic |
| GGATTGGATTCAATGGAAGA+AGG | 0.529487 | 5_2:-52826239 | Msa0775700:CDS |
| CTAGTTGATGATGAATTGGT+TGG | 0.537429 | 5_2:-52825229 | Msa0775700:CDS |
| CAGAATGTTGAATAAAGAGC+TGG | 0.546875 | 5_2:+52825377 | None:intergenic |
| AGTAGAAAATTCAAGTCCAA+AGG | 0.548034 | 5_2:-52826092 | Msa0775700:CDS |
| AAAGGAAGAAGAAAAGAAAA+GGG | 0.548330 | 5_2:-52826074 | Msa0775700:CDS |
| GATTGGATTCAATGGAAGAA+GGG | 0.549935 | 5_2:-52826238 | Msa0775700:CDS |
| TTGGTGTTTAGCTTTGAAAG+TGG | 0.552499 | 5_2:-52826122 | Msa0775700:CDS |
| TTATAGTTCTAGTAGTAGGA+GGG | 0.559285 | 5_2:+52826300 | None:intergenic |
| TCAAGCAAATGAAAAGCTTG+TGG | 0.565993 | 5_2:+52826158 | None:intergenic |
| AACATGTTGTGTTGAAGAGA+AGG | 0.571785 | 5_2:-52825925 | Msa0775700:CDS |
| CTAAAGTTTGATGAAGATGA+TGG | 0.588538 | 5_2:+52826449 | None:intergenic |
| AGAGAAAAGGTGAATGATGA+TGG | 0.597704 | 5_2:-52826023 | Msa0775700:CDS |
| GTGTTTAGCTTTGAAAGTGG+AGG | 0.617135 | 5_2:-52826119 | Msa0775700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTATTTCCAAAAAATAAAA+AGG | + | chr5_2:52825958-52825977 | None:intergenic | 15.0% |
| !! | ACTATTTCCAAAAAATAAAA+AGG | + | chr5_2:52825958-52825977 | None:intergenic | 15.0% |
| !!! | ATTATTTCAACAAGCTTTTA+AGG | - | chr5_2:52825878-52825897 | Msa0775700:CDS | 20.0% |
| !!! | GATCTTACCTTTTTATTTTT+TGG | - | chr5_2:52825948-52825967 | Msa0775700:CDS | 20.0% |
| !! | CAAATTTAATACATGGAAAA+CGG | + | chr5_2:52826092-52826111 | None:intergenic | 20.0% |
| !! | TAGTTAGCAAATTTAATACA+TGG | + | chr5_2:52826099-52826118 | None:intergenic | 20.0% |
| !!! | ATTATTTCAACAAGCTTTTA+AGG | - | chr5_2:52825878-52825897 | Msa0775700:CDS | 20.0% |
| !!! | GATCTTACCTTTTTATTTTT+TGG | - | chr5_2:52825948-52825967 | Msa0775700:CDS | 20.0% |
| !! | CAAATTTAATACATGGAAAA+CGG | + | chr5_2:52826092-52826111 | None:intergenic | 20.0% |
| !! | TAGTTAGCAAATTTAATACA+TGG | + | chr5_2:52826099-52826118 | None:intergenic | 20.0% |
| ! | TTCTCTAATCCTATGAAAAA+TGG | + | chr5_2:52825214-52825233 | None:intergenic | 25.0% |
| !!! | GAAATTATAGTTCTAGTAGT+AGG | + | chr5_2:52825291-52825310 | None:intergenic | 25.0% |
| ! | ATAATTTCTTCTTCTTCTTC+TGG | - | chr5_2:52825303-52825322 | Msa0775700:CDS | 25.0% |
| ! | AAAGGAAGAAGAAAAGAAAA+GGG | - | chr5_2:52825510-52825529 | Msa0775700:intron | 25.0% |
| !!! | TTTTGAGAAGAGTTTGTTTA+AGG | - | chr5_2:52825593-52825612 | Msa0775700:intron | 25.0% |
| ! | AATTTAATGCATGTTTGGAT+TGG | - | chr5_2:52825806-52825825 | Msa0775700:intron | 25.0% |
| ! | ATAAACAATTAGGTCATGTT+TGG | + | chr5_2:52826019-52826038 | None:intergenic | 25.0% |
| ! | TTGTGTTTGCATAAACAATT+AGG | + | chr5_2:52826029-52826048 | None:intergenic | 25.0% |
| ! | CACTATGTATCTAAATTCTA+AGG | + | chr5_2:52826056-52826075 | None:intergenic | 25.0% |
| ! | ATTGAGAACAATTTGAATGA+AGG | - | chr5_2:52826271-52826290 | Msa0775700:CDS | 25.0% |
| ! | TTCTCTAATCCTATGAAAAA+TGG | + | chr5_2:52825214-52825233 | None:intergenic | 25.0% |
| !!! | GAAATTATAGTTCTAGTAGT+AGG | + | chr5_2:52825291-52825310 | None:intergenic | 25.0% |
| ! | ATAATTTCTTCTTCTTCTTC+TGG | - | chr5_2:52825303-52825322 | Msa0775700:CDS | 25.0% |
| ! | AAAGGAAGAAGAAAAGAAAA+GGG | - | chr5_2:52825510-52825529 | Msa0775700:intron | 25.0% |
| !!! | TTTTGAGAAGAGTTTGTTTA+AGG | - | chr5_2:52825593-52825612 | Msa0775700:intron | 25.0% |
| ! | AATTTAATGCATGTTTGGAT+TGG | - | chr5_2:52825806-52825825 | Msa0775700:intron | 25.0% |
| ! | ATAAACAATTAGGTCATGTT+TGG | + | chr5_2:52826019-52826038 | None:intergenic | 25.0% |
| ! | TTGTGTTTGCATAAACAATT+AGG | + | chr5_2:52826029-52826048 | None:intergenic | 25.0% |
| ! | CACTATGTATCTAAATTCTA+AGG | + | chr5_2:52826056-52826075 | None:intergenic | 25.0% |
| ! | ATTGAGAACAATTTGAATGA+AGG | - | chr5_2:52826271-52826290 | Msa0775700:CDS | 25.0% |
| CTAAAGTTTGATGAAGATGA+TGG | + | chr5_2:52825138-52825157 | None:intergenic | 30.0% | |
| !! | GTTTCACAACCATTTTTCAT+AGG | - | chr5_2:52825202-52825221 | Msa0775700:CDS | 30.0% |
| !! | TTATAGTTCTAGTAGTAGGA+GGG | + | chr5_2:52825287-52825306 | None:intergenic | 30.0% |
| !! | ATTATAGTTCTAGTAGTAGG+AGG | + | chr5_2:52825288-52825307 | None:intergenic | 30.0% |
| ! | GCTTGAAAATGAGAACTTTT+TGG | - | chr5_2:52825443-52825462 | Msa0775700:CDS | 30.0% |
| AGTAGAAAATTCAAGTCCAA+AGG | - | chr5_2:52825492-52825511 | Msa0775700:intron | 30.0% | |
| ! | CTTTTCTTTTCTTCTTCCTT+TGG | + | chr5_2:52825511-52825530 | None:intergenic | 30.0% |
| CAAAGGAAGAAGAAAAGAAA+AGG | - | chr5_2:52825509-52825528 | Msa0775700:intron | 30.0% | |
| GAAGAAAAACAAGAGAGAAA+AGG | - | chr5_2:52825548-52825567 | Msa0775700:intron | 30.0% | |
| ! | AAGAGTTTGTTTAAGGAAGT+TGG | - | chr5_2:52825600-52825619 | Msa0775700:intron | 30.0% |
| TTGTTTAAGGAAGTTGGAAA+TGG | - | chr5_2:52825606-52825625 | Msa0775700:intron | 30.0% | |
| TCAAAATCAAAGACAGAAAC+AGG | + | chr5_2:52825717-52825736 | None:intergenic | 30.0% | |
| CCAAACATGCATTAAATTTG+AGG | + | chr5_2:52825804-52825823 | None:intergenic | 30.0% | |
| CCTCAAATTTAATGCATGTT+TGG | - | chr5_2:52825801-52825820 | Msa0775700:intron | 30.0% | |
| CTATTGAAATGCTCATAAGT+TGG | - | chr5_2:52825849-52825868 | Msa0775700:intron | 30.0% | |
| TTAAGGATAGCTTACGAAAA+CGG | - | chr5_2:52825895-52825914 | Msa0775700:CDS | 30.0% | |
| CATATATAAACATGTTGCAG+AGG | - | chr5_2:52826123-52826142 | Msa0775700:CDS | 30.0% | |
| TTTGTGATGTTGATATGAGT+TGG | - | chr5_2:52826152-52826171 | Msa0775700:CDS | 30.0% | |
| TGAAGAAGAGAGAAAAGTTA+AGG | - | chr5_2:52826246-52826265 | Msa0775700:CDS | 30.0% | |
| AAGGATCAAAGAAAAAAGAG+AGG | - | chr5_2:52826290-52826309 | Msa0775700:CDS | 30.0% | |
| ACAATGAGTGTGTAGATATT+TGG | - | chr5_2:52826317-52826336 | Msa0775700:CDS | 30.0% | |
| CTAAAGTTTGATGAAGATGA+TGG | + | chr5_2:52825138-52825157 | None:intergenic | 30.0% | |
| !! | GTTTCACAACCATTTTTCAT+AGG | - | chr5_2:52825202-52825221 | Msa0775700:CDS | 30.0% |
| !! | TTATAGTTCTAGTAGTAGGA+GGG | + | chr5_2:52825287-52825306 | None:intergenic | 30.0% |
| !! | ATTATAGTTCTAGTAGTAGG+AGG | + | chr5_2:52825288-52825307 | None:intergenic | 30.0% |
| ! | GCTTGAAAATGAGAACTTTT+TGG | - | chr5_2:52825443-52825462 | Msa0775700:CDS | 30.0% |
| AGTAGAAAATTCAAGTCCAA+AGG | - | chr5_2:52825492-52825511 | Msa0775700:intron | 30.0% | |
| ! | CTTTTCTTTTCTTCTTCCTT+TGG | + | chr5_2:52825511-52825530 | None:intergenic | 30.0% |
| CAAAGGAAGAAGAAAAGAAA+AGG | - | chr5_2:52825509-52825528 | Msa0775700:intron | 30.0% | |
| GAAGAAAAACAAGAGAGAAA+AGG | - | chr5_2:52825548-52825567 | Msa0775700:intron | 30.0% | |
| ! | AAGAGTTTGTTTAAGGAAGT+TGG | - | chr5_2:52825600-52825619 | Msa0775700:intron | 30.0% |
| TTGTTTAAGGAAGTTGGAAA+TGG | - | chr5_2:52825606-52825625 | Msa0775700:intron | 30.0% | |
| TCAAAATCAAAGACAGAAAC+AGG | + | chr5_2:52825717-52825736 | None:intergenic | 30.0% | |
| CCAAACATGCATTAAATTTG+AGG | + | chr5_2:52825804-52825823 | None:intergenic | 30.0% | |
| CCTCAAATTTAATGCATGTT+TGG | - | chr5_2:52825801-52825820 | Msa0775700:intron | 30.0% | |
| CTATTGAAATGCTCATAAGT+TGG | - | chr5_2:52825849-52825868 | Msa0775700:intron | 30.0% | |
| TTAAGGATAGCTTACGAAAA+CGG | - | chr5_2:52825895-52825914 | Msa0775700:CDS | 30.0% | |
| CATATATAAACATGTTGCAG+AGG | - | chr5_2:52826123-52826142 | Msa0775700:CDS | 30.0% | |
| TTTGTGATGTTGATATGAGT+TGG | - | chr5_2:52826152-52826171 | Msa0775700:CDS | 30.0% | |
| TGAAGAAGAGAGAAAAGTTA+AGG | - | chr5_2:52826246-52826265 | Msa0775700:CDS | 30.0% | |
| AAGGATCAAAGAAAAAAGAG+AGG | - | chr5_2:52826290-52826309 | Msa0775700:CDS | 30.0% | |
| ACAATGAGTGTGTAGATATT+TGG | - | chr5_2:52826317-52826336 | Msa0775700:CDS | 30.0% | |
| GTTAATGGGATTGGATTCAA+TGG | - | chr5_2:52825338-52825357 | Msa0775700:CDS | 35.0% | |
| GATTGGATTCAATGGAAGAA+GGG | - | chr5_2:52825346-52825365 | Msa0775700:CDS | 35.0% | |
| TTGCAATGTGTAAGTGAACT+TGG | + | chr5_2:52825390-52825409 | None:intergenic | 35.0% | |
| TCAAGCAAATGAAAAGCTTG+TGG | + | chr5_2:52825429-52825448 | None:intergenic | 35.0% | |
| !! | TTGGTGTTTAGCTTTGAAAG+TGG | - | chr5_2:52825462-52825481 | Msa0775700:intron | 35.0% |
| AGAGAAAAGGTGAATGATGA+TGG | - | chr5_2:52825561-52825580 | Msa0775700:intron | 35.0% | |
| AACATGTTGTGTTGAAGAGA+AGG | - | chr5_2:52825659-52825678 | Msa0775700:intron | 35.0% | |
| ! | GATTTTGAGCATGATGTTTC+TGG | - | chr5_2:52825729-52825748 | Msa0775700:intron | 35.0% |
| CAGAATGTTGAATAAAGAGC+TGG | + | chr5_2:52826210-52826229 | None:intergenic | 35.0% | |
| !! | CAAGCTAGTTGATGATGAAT+TGG | - | chr5_2:52826351-52826370 | Msa0775700:CDS | 35.0% |
| !! | CTAGTTGATGATGAATTGGT+TGG | - | chr5_2:52826355-52826374 | Msa0775700:CDS | 35.0% |
| GTGAATTGCATGAAGTAAAG+AGG | - | chr5_2:52826383-52826402 | Msa0775700:CDS | 35.0% | |
| GTTAATGGGATTGGATTCAA+TGG | - | chr5_2:52825338-52825357 | Msa0775700:CDS | 35.0% | |
| GATTGGATTCAATGGAAGAA+GGG | - | chr5_2:52825346-52825365 | Msa0775700:CDS | 35.0% | |
| TTGCAATGTGTAAGTGAACT+TGG | + | chr5_2:52825390-52825409 | None:intergenic | 35.0% | |
| TCAAGCAAATGAAAAGCTTG+TGG | + | chr5_2:52825429-52825448 | None:intergenic | 35.0% | |
| !! | TTGGTGTTTAGCTTTGAAAG+TGG | - | chr5_2:52825462-52825481 | Msa0775700:intron | 35.0% |
| AGAGAAAAGGTGAATGATGA+TGG | - | chr5_2:52825561-52825580 | Msa0775700:intron | 35.0% | |
| AACATGTTGTGTTGAAGAGA+AGG | - | chr5_2:52825659-52825678 | Msa0775700:intron | 35.0% | |
| ! | GATTTTGAGCATGATGTTTC+TGG | - | chr5_2:52825729-52825748 | Msa0775700:intron | 35.0% |
| CAGAATGTTGAATAAAGAGC+TGG | + | chr5_2:52826210-52826229 | None:intergenic | 35.0% | |
| !! | CAAGCTAGTTGATGATGAAT+TGG | - | chr5_2:52826351-52826370 | Msa0775700:CDS | 35.0% |
| !! | CTAGTTGATGATGAATTGGT+TGG | - | chr5_2:52826355-52826374 | Msa0775700:CDS | 35.0% |
| GTGAATTGCATGAAGTAAAG+AGG | - | chr5_2:52826383-52826402 | Msa0775700:CDS | 35.0% | |
| TGGTGTAGTTGCAAGGTTAA+TGG | - | chr5_2:52825323-52825342 | Msa0775700:CDS | 40.0% | |
| GGTGTAGTTGCAAGGTTAAT+GGG | - | chr5_2:52825324-52825343 | Msa0775700:CDS | 40.0% | |
| AGTTGCAAGGTTAATGGGAT+TGG | - | chr5_2:52825329-52825348 | Msa0775700:CDS | 40.0% | |
| GGATTGGATTCAATGGAAGA+AGG | - | chr5_2:52825345-52825364 | Msa0775700:CDS | 40.0% | |
| !! | GTGTTTAGCTTTGAAAGTGG+AGG | - | chr5_2:52825465-52825484 | Msa0775700:intron | 40.0% |
| TGGTGTAGTTGCAAGGTTAA+TGG | - | chr5_2:52825323-52825342 | Msa0775700:CDS | 40.0% | |
| GGTGTAGTTGCAAGGTTAAT+GGG | - | chr5_2:52825324-52825343 | Msa0775700:CDS | 40.0% | |
| AGTTGCAAGGTTAATGGGAT+TGG | - | chr5_2:52825329-52825348 | Msa0775700:CDS | 40.0% | |
| GGATTGGATTCAATGGAAGA+AGG | - | chr5_2:52825345-52825364 | Msa0775700:CDS | 40.0% | |
| !! | GTGTTTAGCTTTGAAAGTGG+AGG | - | chr5_2:52825465-52825484 | Msa0775700:intron | 40.0% |
| AGCTCAAAAACTGTTGCTGC+AGG | - | chr5_2:52825177-52825196 | Msa0775700:CDS | 45.0% | |
| GCTCAAAAACTGTTGCTGCA+GGG | - | chr5_2:52825178-52825197 | Msa0775700:CDS | 45.0% | |
| CTTCTTCTGGTGTAGTTGCA+AGG | - | chr5_2:52825316-52825335 | Msa0775700:CDS | 45.0% | |
| !! | GAGCATGATGTTTCTGGAAC+AGG | - | chr5_2:52825735-52825754 | Msa0775700:intron | 45.0% |
| !! | AGCTGGTCATTTTCAAGCAC+TGG | + | chr5_2:52826193-52826212 | None:intergenic | 45.0% |
| AGCTCAAAAACTGTTGCTGC+AGG | - | chr5_2:52825177-52825196 | Msa0775700:CDS | 45.0% | |
| GCTCAAAAACTGTTGCTGCA+GGG | - | chr5_2:52825178-52825197 | Msa0775700:CDS | 45.0% | |
| CTTCTTCTGGTGTAGTTGCA+AGG | - | chr5_2:52825316-52825335 | Msa0775700:CDS | 45.0% | |
| !! | GAGCATGATGTTTCTGGAAC+AGG | - | chr5_2:52825735-52825754 | Msa0775700:intron | 45.0% |
| !! | AGCTGGTCATTTTCAAGCAC+TGG | + | chr5_2:52826193-52826212 | None:intergenic | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 52825102 | 52826504 | 52825102 | ID=Msa0775700;Name=Msa0775700 |
| chr5_2 | mRNA | 52825102 | 52826504 | 52825102 | ID=Msa0775700-mRNA-1;Parent=Msa0775700;Name=Msa0775700-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|1|0|1|1|1|2|0|338 |
| chr5_2 | exon | 52825850 | 52826504 | 52825850 | ID=Msa0775700-mRNA-1:exon:15796;Parent=Msa0775700-mRNA-1 |
| chr5_2 | exon | 52825102 | 52825463 | 52825102 | ID=Msa0775700-mRNA-1:exon:15795;Parent=Msa0775700-mRNA-1 |
| chr5_2 | CDS | 52825850 | 52826504 | 52825850 | ID=Msa0775700-mRNA-1:cds;Parent=Msa0775700-mRNA-1 |
| chr5_2 | CDS | 52825102 | 52825463 | 52825102 | ID=Msa0775700-mRNA-1:cds;Parent=Msa0775700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
