AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0197930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0197930 MtrunA17_Chr2g0290471 97.436 78 1 1 4 81 3 79 9.27e-41 134
Msa0197930 MtrunA17_Chr8g0386231 66.667 48 16 0 34 81 50 97 9.19e-15 67.0
Msa0197930 MtrunA17_Chr4g0001151 69.767 43 13 0 36 78 169 211 4.41e-13 62.4
Msa0197930 MtrunA17_Chr3g0132061 65.217 46 16 0 36 81 35 80 5.32e-13 62.0
Msa0197930 MtrunA17_Chr3g0132051 63.043 46 17 0 36 81 35 80 9.08e-13 61.2
Msa0197930 MtrunA17_Chr7g0264601 43.860 57 31 1 24 80 3 58 5.30e-12 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0197930 AT5G50740.2 68.889 45 14 0 37 81 29 73 2.56e-15 66.6
Msa0197930 AT5G50740.4 68.889 45 14 0 37 81 36 80 4.95e-15 65.9
Msa0197930 AT5G50740.5 68.889 45 14 0 37 81 29 73 6.45e-15 67.4
Msa0197930 AT5G50740.1 68.889 45 14 0 37 81 29 73 6.45e-15 67.4
Msa0197930 AT5G50740.3 68.889 45 14 0 37 81 36 80 9.05e-15 67.0
Msa0197930 AT5G63530.2 69.565 46 14 0 36 81 59 104 2.13e-14 66.2
Msa0197930 AT5G63530.1 50.704 71 24 1 22 81 49 119 1.72e-12 61.2
Msa0197930 AT3G02960.1 41.333 75 44 0 5 79 6 80 5.58e-12 59.3
Msa0197930 AT2G36950.1 55.814 43 19 0 37 79 52 94 2.21e-11 58.2

Find 17 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAAGGAAGAAGAGAAAA+AGG 0.176799 2_1:+16278071 Msa0197930:CDS
TCAACCTTGAGTACTATTTC+TGG 0.234887 2_1:-16278120 None:intergenic
AAAGAAAGAAGAAACCAAAA+AGG 0.312807 2_1:+16278047 Msa0197930:CDS
GGAGGTGACCGCAGATAGTA+AGG 0.417983 2_1:+16279024 Msa0197930:CDS
AAAGCATTGAAAGGATTTGA+AGG 0.510804 2_1:+16278177 Msa0197930:CDS
TGAAAGGAGAACAAGGAAGA+AGG 0.511133 2_1:+16278024 Msa0197930:intron
AAAGTTGCAAAAGCATTGAA+AGG 0.535218 2_1:+16278168 Msa0197930:CDS
ACCTCCAGAAATAGTACTCA+AGG 0.560038 2_1:+16278116 Msa0197930:CDS
GTGTGTGAAAGGAGTGGAGG+AGG 0.602247 2_1:+16279006 Msa0197930:intron
GGCAGCAAAGTGGTAGTGAA+AGG 0.606418 2_1:+16279046 Msa0197930:CDS
ACCTTGAGTACTATTTCTGG+AGG 0.614898 2_1:-16278117 None:intergenic
AGATAGTAAGGGCAGCAAAG+TGG 0.627174 2_1:+16279036 Msa0197930:CDS
TTTGCTGCCCTTACTATCTG+CGG 0.627410 2_1:-16279032 None:intergenic
TGCATTGTGAAGCTTGTGCA+AGG 0.638724 2_1:+16278145 Msa0197930:CDS
GAGGTGACCGCAGATAGTAA+GGG 0.644356 2_1:+16279025 Msa0197930:CDS
CAAAGTGGTAGTGAAAGGAA+AGG 0.648004 2_1:+16279051 Msa0197930:CDS
GTTGTGTGTGAAAGGAGTGG+AGG 0.667974 2_1:+16279003 Msa0197930:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTATAATTATTTAAT+AGG - chr2_1:16277574-16277593 None:intergenic 0.0%
!! TATTTATTTATAAGGATAAA+GGG - chr2_1:16276613-16276632 None:intergenic 10.0%
!!! TTTTATAATTATTTAATAGG+TGG - chr2_1:16277571-16277590 None:intergenic 10.0%
!!! AGTTTTATATTAACTAATAC+AGG + chr2_1:16275955-16275974 Msa0197930:intron 15.0%
!!! ATACTTATATCAAAATTTTC+TGG - chr2_1:16276089-16276108 None:intergenic 15.0%
!!! AACATTTTTCATATTTTAAG+TGG + chr2_1:16276497-16276516 Msa0197930:intron 15.0%
!! GTATTTATTTATAAGGATAA+AGG - chr2_1:16276614-16276633 None:intergenic 15.0%
!!! TCATTTTGAAACAATTTTTT+TGG - chr2_1:16276669-16276688 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG - chr2_1:16277369-16277388 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG + chr2_1:16277368-16277387 Msa0197930:intron 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG + chr2_1:16277392-16277411 Msa0197930:intron 15.0%
!!! TTTTTTTTTTTTTGTGTGAA+AGG + chr2_1:16278008-16278027 Msa0197930:intron 15.0%
!!! ATATGTACATTATTTTTTTG+AGG - chr2_1:16278506-16278525 None:intergenic 15.0%
!!! TATAAAATTCTAACTTTTAC+AGG + chr2_1:16278672-16278691 Msa0197930:intron 15.0%
!!! GCATTTTTCATAAAAAATAA+AGG + chr2_1:16278917-16278936 Msa0197930:intron 15.0%
!!! GATATAAGTATTCTGAAAAT+TGG + chr2_1:16276098-16276117 Msa0197930:intron 20.0%
!!! AAAATTGGAGTATTAAATCT+CGG + chr2_1:16276113-16276132 Msa0197930:intron 20.0%
!! AAATGATAAATGGGTAAAAT+TGG + chr2_1:16276175-16276194 Msa0197930:intron 20.0%
!! AGGGGTAAAATATTAAATAT+AGG + chr2_1:16276215-16276234 Msa0197930:intron 20.0%
!! GGGGTAAAATATTAAATATA+GGG + chr2_1:16276216-16276235 Msa0197930:intron 20.0%
!! GGGTAAAATATTAAATATAG+GGG + chr2_1:16276217-16276236 Msa0197930:intron 20.0%
!! ATTAAACCCAACATAATAAT+GGG - chr2_1:16276308-16276327 None:intergenic 20.0%
!! AATTAAACCCAACATAATAA+TGG - chr2_1:16276309-16276328 None:intergenic 20.0%
!!! GGGTTTAATTCTTTATTTTT+TGG + chr2_1:16276319-16276338 Msa0197930:intron 20.0%
!! GAAAATAATTAAAGTTGCAT+TGG - chr2_1:16276708-16276727 None:intergenic 20.0%
!!! TGTCTTTTTCTTATAAAGTA+AGG + chr2_1:16276787-16276806 Msa0197930:intron 20.0%
!!! GTCTTTTTCTTATAAAGTAA+GGG + chr2_1:16276788-16276807 Msa0197930:intron 20.0%
!!! AATTTTTTCTCTTCATCTAA+CGG - chr2_1:16277178-16277197 None:intergenic 20.0%
!! AATGATTAAAAGAAAGAGAA+TGG + chr2_1:16277335-16277354 Msa0197930:intron 20.0%
!! AAACTAACCAATAGTTAATA+AGG - chr2_1:16277378-16277397 None:intergenic 20.0%
!! AGTGTGAGATTAAATTAATA+TGG - chr2_1:16277775-16277794 None:intergenic 20.0%
!! ACTATATGTACTAATAGTTA+TGG - chr2_1:16277807-16277826 None:intergenic 20.0%
!!! TTATACTTGAGAAATTTTGA+TGG - chr2_1:16277855-16277874 None:intergenic 20.0%
!!! TATAGTTGATATTTTCTACT+TGG + chr2_1:16277975-16277994 Msa0197930:intron 20.0%
!! GATTTATTAGATTATTGTCT+TGG - chr2_1:16278281-16278300 None:intergenic 20.0%
!! AAGTAATATGTACTACATTA+TGG - chr2_1:16278482-16278501 None:intergenic 20.0%
!! TTCATAAAAAATAAAGGTCT+AGG + chr2_1:16278923-16278942 Msa0197930:intron 20.0%
!!! GAATTCTTTCTTTTTCATCA+AGG - chr2_1:16276020-16276039 None:intergenic 25.0%
! ATTGAGTAAGGAATTATCAT+CGG - chr2_1:16276042-16276061 None:intergenic 25.0%
! TAAACTAGAACAATTGAGTA+AGG - chr2_1:16276054-16276073 None:intergenic 25.0%
! GATGAAGTGAAATGATAAAT+GGG + chr2_1:16276166-16276185 Msa0197930:intron 25.0%
!!! ATATTAAATATAGGGGTATC+AGG + chr2_1:16276224-16276243 Msa0197930:intron 25.0%
!! TAATGATCTTTTACTAGTGT+TGG + chr2_1:16276451-16276470 Msa0197930:intron 25.0%
! AGAGTATATGTATAGTTTGA+GGG - chr2_1:16276566-16276585 None:intergenic 25.0%
! TATAAGGATAAAGGGTAATT+AGG - chr2_1:16276605-16276624 None:intergenic 25.0%
!!! AGAGGGAGTATTTATTTATA+AGG - chr2_1:16276621-16276640 None:intergenic 25.0%
! GAATGGAATCAAATAATCAT+TGG - chr2_1:16276836-16276855 None:intergenic 25.0%
! TCTTAATACTTAGTAGTAGA+TGG + chr2_1:16277000-16277019 Msa0197930:intron 25.0%
! TTATTTAATAGGTGGTATTG+TGG - chr2_1:16277563-16277582 None:intergenic 25.0%
!!! ATGGAGATTTTGAAAATATG+AGG - chr2_1:16277756-16277775 None:intergenic 25.0%
! ATTAATTTAATCTCACACTG+AGG + chr2_1:16277776-16277795 Msa0197930:intron 25.0%
! CATTGTTCTATCATAGAAAT+GGG + chr2_1:16277877-16277896 Msa0197930:intron 25.0%
! ATTGTTCTATCATAGAAATG+GGG + chr2_1:16277878-16277897 Msa0197930:intron 25.0%
! AAAGAAAGAAGAAACCAAAA+AGG + chr2_1:16278047-16278066 Msa0197930:CDS 25.0%
! AATATGTACTACATTATGGT+TGG - chr2_1:16278478-16278497 None:intergenic 25.0%
!! AGGTAAATTTTATACACGAT+AGG + chr2_1:16278692-16278711 Msa0197930:intron 25.0%
! ATAAAAAATAAAGGTCTAGG+TGG + chr2_1:16278926-16278945 Msa0197930:intron 25.0%
! TAAAAAATAAAGGTCTAGGT+GGG + chr2_1:16278927-16278946 Msa0197930:intron 25.0%
! CTTCATCCCACATAAAATTT+TGG - chr2_1:16276153-16276172 None:intergenic 30.0%
GGATGAAGTGAAATGATAAA+TGG + chr2_1:16276165-16276184 Msa0197930:intron 30.0%
! TGGCATTTTCAACAATTTGT+AGG + chr2_1:16276195-16276214 Msa0197930:intron 30.0%
! GGCATTTTCAACAATTTGTA+GGG + chr2_1:16276196-16276215 Msa0197930:intron 30.0%
! GCATTTTCAACAATTTGTAG+GGG + chr2_1:16276197-16276216 Msa0197930:intron 30.0%
!! GGCTTTAAACATCATAAACT+TGG + chr2_1:16276282-16276301 Msa0197930:intron 30.0%
! TTTTGCCTACTTCAAATCTT+TGG - chr2_1:16276523-16276542 None:intergenic 30.0%
GAGTATATGTATAGTTTGAG+GGG - chr2_1:16276565-16276584 None:intergenic 30.0%
! GAGAGTATATGTATAGTTTG+AGG - chr2_1:16276567-16276586 None:intergenic 30.0%
AAATTGTGTGAGAGAAAAGT+TGG - chr2_1:16276748-16276767 None:intergenic 30.0%
ATTGCACACATATTAAGGAA+TGG - chr2_1:16276853-16276872 None:intergenic 30.0%
TTCCTTAATATGTGTGCAAT+TGG + chr2_1:16276853-16276872 Msa0197930:intron 30.0%
!! AAACGACACTCATTTTGAAA+CGG + chr2_1:16276879-16276898 Msa0197930:intron 30.0%
! GAGAGTAATATTTTGTGTAC+CGG + chr2_1:16276903-16276922 Msa0197930:intron 30.0%
!!! AAGTGAAATTTTGACTTTGC+CGG - chr2_1:16276925-16276944 None:intergenic 30.0%
TGTTACATCTTAAAGCAGAT+CGG + chr2_1:16277227-16277246 Msa0197930:intron 30.0%
!! AAACGACACTCATTTTGAAA+CGG - chr2_1:16276879-16276898 None:intergenic 30.0%
!!! TCAAAATGAGTGTCGTTTTA+AGG + chr2_1:16277288-16277307 Msa0197930:intron 30.0%
!!! CAAAATGAGTGTCGTTTTAA+GGG + chr2_1:16277289-16277308 Msa0197930:intron 30.0%
!! AAACGACACTCATTTTGAAA+CGG + chr2_1:16276879-16276898 Msa0197930:intron 30.0%
! AAAGCATGACCTCTAATTTT+GGG - chr2_1:16277678-16277697 None:intergenic 30.0%
CATTTATGCAGAATAGACAT+AGG - chr2_1:16277728-16277747 None:intergenic 30.0%
CTATGTCTATTCTGCATAAA+TGG + chr2_1:16277726-16277745 Msa0197930:intron 30.0%
!! GAGATTTTGAAAATATGAGG+TGG - chr2_1:16277753-16277772 None:intergenic 30.0%
AACAGATGAGTGCAAAATAT+TGG - chr2_1:16277831-16277850 None:intergenic 30.0%
CCATTTCTATGATAGAACAA+TGG - chr2_1:16277879-16277898 None:intergenic 30.0%
CCATTGTTCTATCATAGAAA+TGG + chr2_1:16277876-16277895 Msa0197930:intron 30.0%
!! AAAGTTGCAAAAGCATTGAA+AGG + chr2_1:16278168-16278187 Msa0197930:CDS 30.0%
!! AAAGCATTGAAAGGATTTGA+AGG + chr2_1:16278177-16278196 Msa0197930:CDS 30.0%
TGACAATGGATCATACAAAT+TGG - chr2_1:16278534-16278553 None:intergenic 30.0%
GTGAAATTCAAAAGCAATCA+TGG - chr2_1:16278620-16278639 None:intergenic 30.0%
AAAAAATAAAGGTCTAGGTG+GGG + chr2_1:16278928-16278947 Msa0197930:intron 30.0%
TTGAAAATGTTGTGTGTGAA+AGG + chr2_1:16278995-16279014 Msa0197930:intron 30.0%
! AAATCTCGGAAATGTTTTCC+TGG + chr2_1:16276127-16276146 Msa0197930:intron 35.0%
! TTCCTGGCCAAAATTTTATG+TGG + chr2_1:16276143-16276162 Msa0197930:intron 35.0%
! TCCTGGCCAAAATTTTATGT+GGG + chr2_1:16276144-16276163 Msa0197930:intron 35.0%
AACTTCCAAGCCTAAAAACT+AGG + chr2_1:16276250-16276269 Msa0197930:intron 35.0%
! TGATGTTTAAAGCCTGCATT+AGG - chr2_1:16276276-16276295 None:intergenic 35.0%
AACTTGGCCCATTATTATGT+TGG + chr2_1:16276298-16276317 Msa0197930:intron 35.0%
ACTTGGCCCATTATTATGTT+GGG + chr2_1:16276299-16276318 Msa0197930:intron 35.0%
ATCGACGGTTAACTTATGTT+GGG - chr2_1:16276424-16276443 None:intergenic 35.0%
GATCATTATATCTCCATCGA+CGG - chr2_1:16276439-16276458 None:intergenic 35.0%
! TACTAGTGTTGGAGAACAAT+TGG + chr2_1:16276462-16276481 Msa0197930:intron 35.0%
! ACTAGTGTTGGAGAACAATT+GGG + chr2_1:16276463-16276482 Msa0197930:intron 35.0%
ATATGTATAGTTTGAGGGGT+GGG - chr2_1:16276561-16276580 None:intergenic 35.0%
TATATGTATAGTTTGAGGGG+TGG - chr2_1:16276562-16276581 None:intergenic 35.0%
GGGTAATTAGGAACTTCAAA+TGG - chr2_1:16276593-16276612 None:intergenic 35.0%
!!! GACACTCATTTTGAAACAGA+GGG - chr2_1:16276638-16276657 None:intergenic 35.0%
!!! TGACACTCATTTTGAAACAG+AGG - chr2_1:16276639-16276658 None:intergenic 35.0%
AGCCAATTGCACACATATTA+AGG - chr2_1:16276858-16276877 None:intergenic 35.0%
ACCAGAACACAAATGTGTAT+CGG - chr2_1:16276950-16276969 None:intergenic 35.0%
!!! AACGACACTCATTTTGAAAC+GGG - chr2_1:16276880-16276899 None:intergenic 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG + chr2_1:16277417-16277436 Msa0197930:intron 35.0%
! TGTGCAGAGTATTAATTGGA+GGG + chr2_1:16277421-16277440 Msa0197930:intron 35.0%
CATGTTGTACCAAGAATAGA+CGG - chr2_1:16277615-16277634 None:intergenic 35.0%
CTATTCTTGGTACAACATGA+TGG + chr2_1:16277616-16277635 Msa0197930:intron 35.0%
GAGTACTAGTGTCTTTACTA+CGG + chr2_1:16277652-16277671 Msa0197930:intron 35.0%
! CAAAGCATGACCTCTAATTT+TGG - chr2_1:16277679-16277698 None:intergenic 35.0%
CAAAATTAGAGGTCATGCTT+TGG + chr2_1:16277677-16277696 Msa0197930:intron 35.0%
TATGCAGAATAGACATAGGA+AGG - chr2_1:16277724-16277743 None:intergenic 35.0%
! TTTTGTGTGAAAGGAGAACA+AGG + chr2_1:16278017-16278036 Msa0197930:intron 35.0%
AGAAACCAAAAAGGAGAAGA+AGG + chr2_1:16278056-16278075 Msa0197930:CDS 35.0%
! TTCTTCCTTCTTCTCCTTTT+TGG - chr2_1:16278064-16278083 None:intergenic 35.0%
GAAGAAGGAAGAAGAGAAAA+AGG + chr2_1:16278071-16278090 Msa0197930:CDS 35.0%
TCAACCTTGAGTACTATTTC+TGG - chr2_1:16278123-16278142 None:intergenic 35.0%
CTATTCAAAACATTTGCAGC+AGG - chr2_1:16278314-16278333 None:intergenic 35.0%
!! ACAAAAGTACTAGCTGACAA+TGG - chr2_1:16278548-16278567 None:intergenic 35.0%
CTCTAACAAGGAAAAAAGGA+GGG - chr2_1:16278584-16278603 None:intergenic 35.0%
!!! CTCCTTTTTTCCTTGTTAGA+GGG + chr2_1:16278583-16278602 Msa0197930:intron 35.0%
ATCCCTCTAACAAGGAAAAA+AGG - chr2_1:16278588-16278607 None:intergenic 35.0%
GTTTGCGAGACAATGAAAGA+GGG - chr2_1:16275998-16276017 None:intergenic 40.0%
!! TCCCACATAAAATTTTGGCC+AGG - chr2_1:16276148-16276167 None:intergenic 40.0%
!! TTAGGCCTAGTTTTTAGGCT+TGG - chr2_1:16276258-16276277 None:intergenic 40.0%
!! CTGCATTAGGCCTAGTTTTT+AGG - chr2_1:16276263-16276282 None:intergenic 40.0%
CTAAAAACTAGGCCTAATGC+AGG + chr2_1:16276261-16276280 Msa0197930:intron 40.0%
CATCGACGGTTAACTTATGT+TGG - chr2_1:16276425-16276444 None:intergenic 40.0%
CAACATAAGTTAACCGTCGA+TGG + chr2_1:16276423-16276442 Msa0197930:intron 40.0%
! AGTGGCCAAAGATTTGAAGT+AGG + chr2_1:16276515-16276534 Msa0197930:intron 40.0%
AAAGTTGGAGAGGGTAAAGT+TGG - chr2_1:16276733-16276752 None:intergenic 40.0%
TGTGAGAGAAAAGTTGGAGA+GGG - chr2_1:16276742-16276761 None:intergenic 40.0%
ACCGATACACATTTGTGTTC+TGG + chr2_1:16276946-16276965 Msa0197930:intron 40.0%
ACGGTTTATAGTCAGTTGCA+TGG - chr2_1:16277159-16277178 None:intergenic 40.0%
!!! ACGACACTCATTTTGAAACG+GGG - chr2_1:16276881-16276900 None:intergenic 40.0%
! GTGTGCAGAGTATTAATTGG+AGG + chr2_1:16277420-16277439 Msa0197930:intron 40.0%
GACGGTGGTGACATATATTT+AGG - chr2_1:16277597-16277616 None:intergenic 40.0%
GGTACAACATGATGGCAATT+AGG + chr2_1:16277624-16277643 Msa0197930:intron 40.0%
TTACTACGGCCCAAAATTAG+AGG + chr2_1:16277666-16277685 Msa0197930:intron 40.0%
AATAGACATAGGAAGGACCA+TGG - chr2_1:16277717-16277736 None:intergenic 40.0%
TGAAAGGAGAACAAGGAAGA+AGG + chr2_1:16278024-16278043 Msa0197930:intron 40.0%
GAAGGAAGAAGAGAAAAAGG+AGG + chr2_1:16278074-16278093 Msa0197930:CDS 40.0%
ACCTCCAGAAATAGTACTCA+AGG + chr2_1:16278116-16278135 Msa0197930:CDS 40.0%
!! ACCTTGAGTACTATTTCTGG+AGG - chr2_1:16278120-16278139 None:intergenic 40.0%
CCTCTAACAAGGAAAAAAGG+AGG - chr2_1:16278585-16278604 None:intergenic 40.0%
!!! CCTCCTTTTTTCCTTGTTAG+AGG + chr2_1:16278582-16278601 Msa0197930:intron 40.0%
TTGTGTAGATCCCTCTAACA+AGG - chr2_1:16278596-16278615 None:intergenic 40.0%
AATGTTGTGTGTGAAAGGAG+TGG + chr2_1:16279000-16279019 Msa0197930:intron 40.0%
! CAAAGTGGTAGTGAAAGGAA+AGG + chr2_1:16279051-16279070 Msa0197930:CDS 40.0%
GGTTTGCGAGACAATGAAAG+AGG - chr2_1:16275999-16276018 None:intergenic 45.0%
GTGTGAGAGAAAAGTTGGAG+AGG - chr2_1:16276743-16276762 None:intergenic 45.0%
AGTCAGTTGCATGGTCAAGT+CGG - chr2_1:16277150-16277169 None:intergenic 45.0%
!!! GACACTCATTTTGAAACGGG+GGG - chr2_1:16277282-16277301 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+GGG - chr2_1:16276882-16276901 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr2_1:16276882-16276901 Msa0197930:intron 45.0%
ATGTCACCACCGTCTATTCT+TGG + chr2_1:16277603-16277622 Msa0197930:intron 45.0%
GTTGTACCAAGAATAGACGG+TGG - chr2_1:16277612-16277631 None:intergenic 45.0%
TGCATTGTGAAGCTTGTGCA+AGG + chr2_1:16278145-16278164 Msa0197930:CDS 45.0%
TCTAGGTGGGGAAAAGAGTA+TGG + chr2_1:16278940-16278959 Msa0197930:intron 45.0%
TTTGCTGCCCTTACTATCTG+CGG - chr2_1:16279035-16279054 None:intergenic 45.0%
AGATAGTAAGGGCAGCAAAG+TGG + chr2_1:16279036-16279055 Msa0197930:CDS 45.0%
!!! TTAAAACTTTAATAAAATTT+TGG - chr2_1:16278388-16278407 None:intergenic 5.0%
!!! TTCATAAAATTTTTAATTTA+AGG + chr2_1:16278863-16278882 Msa0197930:intron 5.0%
GTATAGTTTGAGGGGTGGGA+AGG - chr2_1:16276557-16276576 None:intergenic 50.0%
GTTGTGTGTGAAAGGAGTGG+AGG + chr2_1:16279003-16279022 Msa0197930:intron 50.0%
GAGGTGACCGCAGATAGTAA+GGG + chr2_1:16279025-16279044 Msa0197930:CDS 50.0%
! GGCAGCAAAGTGGTAGTGAA+AGG + chr2_1:16279046-16279065 Msa0197930:CDS 50.0%
CAGTTGCATGGTCAAGTCGG+TGG - chr2_1:16277147-16277166 None:intergenic 55.0%
!! TGGACATGCTGACTCAGCCA+TGG + chr2_1:16277697-16277716 Msa0197930:intron 55.0%
GTGTGTGAAAGGAGTGGAGG+AGG + chr2_1:16279006-16279025 Msa0197930:intron 55.0%
GGAGGTGACCGCAGATAGTA+AGG + chr2_1:16279024-16279043 Msa0197930:CDS 55.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 16275925 16279078 16275925 ID=Msa0197930;Name=Msa0197930
chr2_1 mRNA 16275925 16279078 16275925 ID=Msa0197930-mRNA-1;Parent=Msa0197930;Name=Msa0197930-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.33|0|0.5|0.66|0.5|4|0|81
chr2_1 exon 16275925 16275929 16275925 ID=Msa0197930-mRNA-1:exon:6741;Parent=Msa0197930-mRNA-1
chr2_1 exon 16276526 16276532 16276526 ID=Msa0197930-mRNA-1:exon:6742;Parent=Msa0197930-mRNA-1
chr2_1 exon 16278030 16278198 16278030 ID=Msa0197930-mRNA-1:exon:6743;Parent=Msa0197930-mRNA-1
chr2_1 exon 16279017 16279078 16279017 ID=Msa0197930-mRNA-1:exon:6744;Parent=Msa0197930-mRNA-1
chr2_1 CDS 16275925 16275929 16275925 ID=Msa0197930-mRNA-1:cds;Parent=Msa0197930-mRNA-1
chr2_1 CDS 16276526 16276532 16276526 ID=Msa0197930-mRNA-1:cds;Parent=Msa0197930-mRNA-1
chr2_1 CDS 16278030 16278198 16278030 ID=Msa0197930-mRNA-1:cds;Parent=Msa0197930-mRNA-1
chr2_1 CDS 16279017 16279078 16279017 ID=Msa0197930-mRNA-1:cds;Parent=Msa0197930-mRNA-1
Gene Sequence

>Msa0197930

ATGAGATTTGAAGAGAACAAGGAAGAAGGAAAGAAAGAAGAAACCAAAAAGGAGAAGAAGGAAGAAGAGAAAAAGGAGGAAAAGAAAGATGAAGAACAACCTCCAGAAATAGTACTCAAGGTTGATATGCATTGTGAAGCTTGTGCAAGGAAAGTTGCAAAAGCATTGAAAGGATTTGAAGGAGTGGAGGAGGTGACCGCAGATAGTAAGGGCAGCAAAGTGGTAGTGAAAGGAAAGGCAGCA

Protein sequence

>Msa0197930

MRFEENKEEGKKEETKKEKKEEEKKEEKKDEEQPPEIVLKVDMHCEACARKVAKALKGFEGVEEVTADSKGSKVVVKGKAA