AlfalfaGEDB | Msa0239570

M. sativa cultivar zhongmu-4 / Msa0239570

KEGG: -
GO: -
PFAM: PF00403.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0239570	XP_013462942.1	98.155	271	4	1	1	271	1	270	1.57e-177	499

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0239570	sp\|Q9M8T7\|HIP8_ARATH	36.567	268	143	4	4	271	6	246	9.52e-49	164

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0239570	I3STQ6	98.155	271	4	1	1	271	1	270	7.50e-178	499

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002930	Msa0239570	0.800284	1.548946e-48	-8.615850e-47
Msa0003700	Msa0239570	0.806212	9.179088e-50	-8.615850e-47
Msa0016670	Msa0239570	0.817310	3.523024e-52	-8.615850e-47
Msa0017510	Msa0239570	0.856548	2.986245e-62	-8.615850e-47
Msa0026130	Msa0239570	0.806641	7.451698e-50	-8.615850e-47
Msa0027230	Msa0239570	0.806586	7.653879e-50	-8.615850e-47
Msa0028420	Msa0239570	0.826872	2.137164e-54	-8.615850e-47
Msa0028640	Msa0239570	0.810266	1.255595e-50	-8.615850e-47
Msa0031340	Msa0239570	0.814729	1.328438e-51	-8.615850e-47
Msa0034270	Msa0239570	0.821130	4.754449e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0239570	MtrunA17_Chr2g0290471	97.786	271	4	2	1	271	1	269	9.71e-179	492
Msa0239570	MtrunA17_Chr8g0386231	46.691	272	112	4	33	271	50	321	7.10e-62	197
Msa0239570	MtrunA17_Chr3g0132061	50.000	270	100	4	35	271	35	302	2.13e-55	180
Msa0239570	MtrunA17_Chr3g0132051	52.083	240	104	5	35	271	35	266	4.12e-53	173
Msa0239570	MtrunA17_Chr3g0128091	39.161	286	141	6	6	270	10	283	2.83e-38	135
Msa0239570	MtrunA17_Chr3g0094841	36.709	237	122	5	36	271	28	237	3.41e-38	134
Msa0239570	MtrunA17_Chr8g0337951	38.431	255	138	5	25	270	20	264	6.96e-35	126
Msa0239570	MtrunA17_Chr4g0001151	58.333	132	50	2	35	166	169	295	1.19e-33	124
Msa0239570	MtrunA17_Chr4g0028461	34.231	260	142	5	37	271	69	324	3.33e-31	118
Msa0239570	MtrunA17_Chr5g0429111	36.646	161	92	3	37	197	56	206	8.16e-27	106

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0239570	AT5G50740.5	46.094	256	117	5	36	271	29	283	3.19e-61	195
Msa0239570	AT5G50740.1	46.094	256	117	5	36	271	29	283	3.19e-61	195
Msa0239570	AT5G50740.3	46.094	256	117	5	36	271	36	290	5.18e-61	195
Msa0239570	AT3G02960.1	36.567	268	143	4	4	271	6	246	9.68e-50	164
Msa0239570	AT5G63530.2	45.423	284	106	4	35	271	59	340	2.17e-49	166
Msa0239570	AT5G63530.1	45.423	284	106	4	35	271	74	355	3.29e-49	166
Msa0239570	AT5G50740.2	56.911	123	52	1	36	158	29	150	6.50e-39	134
Msa0239570	AT5G50740.4	56.911	123	52	1	36	158	36	157	2.66e-38	132
Msa0239570	AT5G24580.4	29.259	270	147	5	36	270	58	318	6.28e-31	117
Msa0239570	AT5G24580.1	29.259	270	147	5	36	270	58	318	6.28e-31	117

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Find 62 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACTACAAAAGAAAAG+TGG	0.555223	2_2:+14039622	Msa0239570:CDS
AAACGTATCCGTAAGATTAA+AGG	0.281091	2_2:+14041487	Msa0239570:CDS
AAAGAAAAGTGGTAAGAAAG+TGG	0.444575	2_2:+14039633	Msa0239570:CDS
AAAGAAAGAAGAAACCAAAA+AGG	0.312807	2_2:+14037546	Msa0239570:CDS
AAAGCATTGAAAGGATTTGA+AGG	0.510804	2_2:+14037676	Msa0239570:CDS
AAAGGCAGCAGACCCCATAA+AGG	0.514781	2_2:+14039594	Msa0239570:CDS
AAAGTTGCAAAAGCATTGAA+AGG	0.535218	2_2:+14037667	Msa0239570:CDS
AAATCAAACGTAGTGAATAT+TGG	0.336929	2_2:+14042485	Msa0239570:CDS
AACAGATGAGTGCAAAATAT+TGG	0.371375	2_2:-14037328	None:intergenic
AACGATCAAGCAATAGTAAA+AGG	0.307303	2_2:+14042274	Msa0239570:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATTTATGCAGAATAGACAT+AGG	-	chr2_2:14037228-14037247	None:intergenic	30.0%
CTATGTCTATTCTGCATAAA+TGG	+	chr2_2:14037226-14037245	Msa0239570:five_prime_UTR	30.0%
AACAGATGAGTGCAAAATAT+TGG	-	chr2_2:14037331-14037350	None:intergenic	30.0%
CCATTTCTATGATAGAACAA+TGG	-	chr2_2:14037379-14037398	None:intergenic	30.0%
CCATTGTTCTATCATAGAAA+TGG	+	chr2_2:14037376-14037395	Msa0239570:exon	30.0%
TGACAATGGATCATACAAAT+TGG	-	chr2_2:14038025-14038044	None:intergenic	30.0%
CATAGTCTAACAAGGAAAAA+AGG	-	chr2_2:14038079-14038098	None:intergenic	30.0%
GAAGAAGATAGTGAAAAACT+TGG	-	chr2_2:14038551-14038570	None:intergenic	30.0%
GAATAAGAAATAAAAGGTGG+TGG	+	chr2_2:14038764-14038783	Msa0239570:intron	30.0%
ATAAGAAATAAAAGGTGGTG+GGG	+	chr2_2:14038766-14038785	Msa0239570:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	14037193	14042939	14037193	ID=Msa0239570;Name=Msa0239570
chr2_2	mRNA	14037193	14042939	14037193	ID=Msa0239570-mRNA-1;Parent=Msa0239570;Name=Msa0239570-mRNA-1;_AED=0.03;_eAED=0.03;_QI=202\|1\|1\|1\|1\|1\|5\|351\|271
chr2_2	exon	14037193	14037403	14037193	ID=Msa0239570-mRNA-1:exon:5827;Parent=Msa0239570-mRNA-1
chr2_2	exon	14037529	14037697	14037529	ID=Msa0239570-mRNA-1:exon:5828;Parent=Msa0239570-mRNA-1
chr2_2	exon	14039542	14039744	14039542	ID=Msa0239570-mRNA-1:exon:5829;Parent=Msa0239570-mRNA-1
chr2_2	exon	14041418	14041508	14041418	ID=Msa0239570-mRNA-1:exon:5830;Parent=Msa0239570-mRNA-1
chr2_2	exon	14042245	14042939	14042245	ID=Msa0239570-mRNA-1:exon:5831;Parent=Msa0239570-mRNA-1
chr2_2	five_prime_UTR	14037193	14037394	14037193	ID=Msa0239570-mRNA-1:five_prime_utr;Parent=Msa0239570-mRNA-1
chr2_2	CDS	14037395	14037403	14037395	ID=Msa0239570-mRNA-1:cds;Parent=Msa0239570-mRNA-1
chr2_2	CDS	14037529	14037697	14037529	ID=Msa0239570-mRNA-1:cds;Parent=Msa0239570-mRNA-1
chr2_2	CDS	14039542	14039744	14039542	ID=Msa0239570-mRNA-1:cds;Parent=Msa0239570-mRNA-1
chr2_2	CDS	14041418	14041508	14041418	ID=Msa0239570-mRNA-1:cds;Parent=Msa0239570-mRNA-1
chr2_2	CDS	14042245	14042588	14042245	ID=Msa0239570-mRNA-1:cds;Parent=Msa0239570-mRNA-1
chr2_2	three_prime_UTR	14042589	14042939	14042589	ID=Msa0239570-mRNA-1:three_prime_utr;Parent=Msa0239570-mRNA-1

Gene Sequence

>Msa0239570

ATGGGTGAAGAGAACAAGGAAGAAGGAAAGAAAGAAGAAACCAAAAAGGAGAAGAAGGAAGAAGAGAAAAAGGAGGAAAAGAAAGATGAAGAACAACCTCCAGAAATAGTACTCAAGGTTGATATGCATTGTGAAGCTTGTGCAAGGAAAGTTGCAAAAGCATTGAAAGGATTTGAAGGAGTGGAGGAGGTGACCGCAGATAGTAAGGGCAGCAAAGTGGTAGTGAAAGGAAAGGCAGCAGACCCCATAAAGGTGCTCAAAAGACTACAAAAGAAAAGTGGTAAGAAAGTGGAGTTAATTTCACCTTTGCCAAAACCTCAAGAGGAGAAAAAAGAAGAAGAAATTAAAGAAGAACCAAAGCCAGAGGAGAAAAAGGATGAGCCTCCACCTGTGGTAACAATAGTTCTCAAAATTAGAATGCATTGTGATGCATGTGCTCAAGTTATACAGAAACGTATCCGTAAGATTAAAGGAGTTGAATCAGTGGAAACAAATTTGGGAAACGATCAAGCAATAGTAAAAGGAGTGATTGATCCAACAAAGCTTGTTGATGAAGTGTTCAAGAGGACAAAAAAGCAAGCTTCAATTGTGAAAGAGGAAGAAAAGACGGAAGAAGAGAAGAAAGAAGAAGAGAAAAAGGAAGAGGTCAAAGAAGAAGAGAAAAAAGAAAGTGAAGAAGAAAACAAAGGAGAAGAAGATGATAATAAAACTGAAATCAAACGTAGTGAATATTGGCCATCAAAAGACTATGTTGACTATGCTTATGCACCTGAGATCTTCAGTGATGAGAATCCAAATGCTTGTTCTGTTATGTAG

Protein sequence

>Msa0239570

MGEENKEEGKKEETKKEKKEEEKKEEKKDEEQPPEIVLKVDMHCEACARKVAKALKGFEGVEEVTADSKGSKVVVKGKAADPIKVLKRLQKKSGKKVELISPLPKPQEEKKEEEIKEEPKPEEKKDEPPPVVTIVLKIRMHCDACAQVIQKRIRKIKGVESVETNLGNDQAIVKGVIDPTKLVDEVFKRTKKQASIVKEEEKTEEEKKEEEKKEEVKEEEKKESEEENKGEEDDNKTEIKRSEYWPSKDYVDYAYAPEIFSDENPNACSVM*