Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0783320 | XP_003616826.1 | 94.638 | 373 | 20 | 0 | 1 | 373 | 25 | 397 | 0.0 | 729 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0783320 | sp|Q8L8M9|IQD33_ARATH | 38.422 | 393 | 162 | 10 | 2 | 333 | 27 | 400 | 5.99e-66 | 218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0783320 | G7K7F4 | 94.638 | 373 | 20 | 0 | 1 | 373 | 25 | 397 | 0.0 | 729 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0081520 | Msa0783320 | 0.815462 | 9.132551e-52 | -8.615850e-47 |
| Msa0626450 | Msa0783320 | 0.807751 | 4.338452e-50 | -8.615850e-47 |
| Msa0626490 | Msa0783320 | 0.808821 | 2.564813e-50 | -8.615850e-47 |
| Msa0664600 | Msa0783320 | 0.805196 | 1.500429e-49 | -8.615850e-47 |
| Msa0765240 | Msa0783320 | 0.807457 | 5.009009e-50 | -8.615850e-47 |
| Msa0783320 | Msa0824960 | 0.835151 | 1.982895e-56 | -8.615850e-47 |
| Msa0783320 | Msa0966400 | 0.804338 | 2.266403e-49 | -8.615850e-47 |
| Msa0783320 | Msa1152990 | 0.800303 | 1.535150e-48 | -8.615850e-47 |
| Msa0783320 | Msa1411020 | 0.800921 | 1.148656e-48 | -8.615850e-47 |
| Msa0211150 | Msa0783320 | 0.806393 | 8.406466e-50 | -8.615850e-47 |
| Msa0223080 | Msa0783320 | 0.805217 | 1.484926e-49 | -8.615850e-47 |
| Msa0411160 | Msa0783320 | 0.801851 | 7.407477e-49 | -8.615850e-47 |
| Msa0411190 | Msa0783320 | 0.810248 | 1.266524e-50 | -8.615850e-47 |
| Msa0248970 | Msa0783320 | 0.811130 | 8.167552e-51 | -8.615850e-47 |
| Msa0302160 | Msa0783320 | 0.801836 | 7.460934e-49 | -8.615850e-47 |
| Msa0339490 | Msa0783320 | 0.800699 | 1.274867e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0783320 | MtrunA17_Chr5g0438571 | 94.638 | 373 | 20 | 0 | 1 | 373 | 25 | 397 | 0.0 | 729 |
| Msa0783320 | MtrunA17_Chr6g0462191 | 30.055 | 183 | 108 | 5 | 67 | 234 | 94 | 271 | 8.19e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0783320 | AT5G35670.1 | 38.422 | 393 | 162 | 10 | 2 | 333 | 27 | 400 | 6.09e-67 | 218 |
| Msa0783320 | AT3G52290.1 | 32.948 | 173 | 101 | 4 | 80 | 241 | 107 | 275 | 3.99e-13 | 70.9 |
| Msa0783320 | AT2G26410.2 | 34.078 | 179 | 97 | 6 | 80 | 242 | 147 | 320 | 1.51e-12 | 69.3 |
| Msa0783320 | AT2G26410.1 | 34.078 | 179 | 97 | 6 | 80 | 242 | 147 | 320 | 1.51e-12 | 69.3 |
| Msa0783320 | AT3G09710.1 | 27.969 | 261 | 160 | 8 | 35 | 282 | 66 | 311 | 2.39e-12 | 68.6 |
Find 53 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAATTAGTTCACTTTATT+TGG | 0.091875 | 5_2:-67248148 | None:intergenic |
| ACTTCCAATGAGTGACTTCT+TGG | 0.238206 | 5_2:+67248109 | Msa0783320:exon |
| AATGATTTGGAGTTTGAATT+TGG | 0.239655 | 5_2:-67245073 | None:intergenic |
| TTCTTCTTCATTCAATGATT+TGG | 0.248388 | 5_2:-67245086 | None:intergenic |
| GAAGATTTGTTGAGTGATAA+AGG | 0.252466 | 5_2:+67245004 | Msa0783320:CDS |
| CTCAACAGTTTCTTCACTCT+TGG | 0.300918 | 5_2:-67245032 | None:intergenic |
| TTGAAATTGGTAAGCTTTGA+TGG | 0.305728 | 5_2:+67244485 | Msa0783320:five_prime_UTR |
| GTCTTGCTTATATCTTGCTT+TGG | 0.338818 | 5_2:-67248052 | None:intergenic |
| TAAGATGTAATTATAATAGT+TGG | 0.345609 | 5_2:+67248300 | Msa0783320:three_prime_UTR |
| GGCTTATGCTTTCTCACAAC+AGG | 0.367408 | 5_2:+67246685 | Msa0783320:CDS |
| ACTAGCAAAACATAACAATA+TGG | 0.381272 | 5_2:+67246913 | Msa0783320:CDS |
| CTTTGATGGGTTTCACTGTT+GGG | 0.384078 | 5_2:+67244499 | Msa0783320:five_prime_UTR |
| GAGATCATAAGCTCAGAAAA+TGG | 0.385879 | 5_2:+67245931 | Msa0783320:CDS |
| AAGTCCAGATAGAAAATCTA+TGG | 0.396813 | 5_2:+67245981 | Msa0783320:CDS |
| ACTCAACAAATCTTCTTGTA+TGG | 0.397260 | 5_2:-67244996 | None:intergenic |
| TCACTCATTACTAAAAGCTC+TGG | 0.403807 | 5_2:-67248223 | None:intergenic |
| TTAAAATTAGTCTTTGTTGT+TGG | 0.415218 | 5_2:-67247190 | None:intergenic |
| AAGTTATACAAATAGAATAA+TGG | 0.416833 | 5_2:-67248344 | None:intergenic |
| GCTTTGATGGGTTTCACTGT+TGG | 0.430356 | 5_2:+67244498 | Msa0783320:five_prime_UTR |
| ACATCAGTTGAAGTACAAAC+AGG | 0.432498 | 5_2:+67246006 | Msa0783320:CDS |
| TCATCATGAAATTGATAACT+TGG | 0.439924 | 5_2:-67247247 | None:intergenic |
| ATCAGCATATAGAAGTTTCA+AGG | 0.448132 | 5_2:+67245126 | Msa0783320:CDS |
| AACTAGAGCAATAAAGCAAA+AGG | 0.480169 | 5_2:+67246101 | Msa0783320:CDS |
| GATGGGTTTCACTGTTGGGT+TGG | 0.505076 | 5_2:+67244503 | Msa0783320:five_prime_UTR |
| AGAGCCAAGAAGTCACTCAT+TGG | 0.510026 | 5_2:-67248113 | None:intergenic |
| ATTCATCCGAAAATAGAAGA+TGG | 0.516203 | 5_2:+67244873 | Msa0783320:CDS |
| GTAGCAATGTTTCGAAAATG+AGG | 0.518133 | 5_2:+67246618 | Msa0783320:CDS |
| TGAAATTGGTAAGCTTTGAT+GGG | 0.519966 | 5_2:+67244486 | Msa0783320:five_prime_UTR |
| AATGAGGATGCAAGACAGAA+TGG | 0.526107 | 5_2:+67246634 | Msa0783320:CDS |
| CACTCATTACTAAAAGCTCT+GGG | 0.530155 | 5_2:-67248222 | None:intergenic |
| TTGAAAGATGGATGGCAACT+CGG | 0.537214 | 5_2:+67246960 | Msa0783320:CDS |
| AGTACATAATATCAAGTGCT+TGG | 0.538965 | 5_2:+67248373 | Msa0783320:three_prime_UTR |
| TTTCATACTGCTTCATCGCA+TGG | 0.540116 | 5_2:-67247009 | None:intergenic |
| GCTGGAGTTGGCTTGAAAGA+TGG | 0.544895 | 5_2:+67246948 | Msa0783320:CDS |
| ATATGGAACAAAATATGAGC+TGG | 0.547311 | 5_2:+67246930 | Msa0783320:CDS |
| TTTAAATGAGAAAACTTCAG+TGG | 0.556481 | 5_2:-67246034 | None:intergenic |
| AAGCTAGAAGAACTGTGTCT+AGG | 0.559319 | 5_2:+67247212 | Msa0783320:CDS |
| AACAAAATATGAGCTGGAGT+TGG | 0.563437 | 5_2:+67246936 | Msa0783320:CDS |
| ATTTCATGATGAACATCCAA+AGG | 0.567837 | 5_2:+67247258 | Msa0783320:CDS |
| ACAGAATGGAAGCAGCTACA+AGG | 0.585908 | 5_2:+67246648 | Msa0783320:CDS |
| CTAGAAGAACTGTGTCTAGG+AGG | 0.595815 | 5_2:+67247215 | Msa0783320:CDS |
| AAGCTGAATCTTCTTCTGCA+AGG | 0.601371 | 5_2:-67244940 | None:intergenic |
| TACAAGGAGAGAAAGAGCAT+TGG | 0.605289 | 5_2:+67246664 | Msa0783320:CDS |
| GAATAGTTATCAAAATGAAG+TGG | 0.607953 | 5_2:-67247127 | None:intergenic |
| TTGCAGGCATGCATGAAAGA+TGG | 0.613038 | 5_2:+67247995 | Msa0783320:intron |
| TGGCTCAATCAATGTTAACA+AGG | 0.617216 | 5_2:+67248015 | Msa0783320:CDS |
| TCGGCTTCAAGACACTTCAT+CGG | 0.622746 | 5_2:+67246979 | Msa0783320:CDS |
| TCAGTTAAATCATACTTGTG+TGG | 0.635037 | 5_2:+67244899 | Msa0783320:CDS |
| CATCAGTTGAAGTACAAACA+GGG | 0.652318 | 5_2:+67246007 | Msa0783320:CDS |
| GAGTTGGCTTGAAAGATGGA+TGG | 0.658655 | 5_2:+67246952 | Msa0783320:CDS |
| TGTGTCTACTAGTATTGAGT+GGG | 0.660229 | 5_2:+67248171 | Msa0783320:three_prime_UTR |
| ATCAAGTGCTTGGTATGAGA+TGG | 0.661163 | 5_2:+67248383 | Msa0783320:three_prime_UTR |
| GTGTGTCTACTAGTATTGAG+TGG | 0.680075 | 5_2:+67248170 | Msa0783320:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATCATTTATATGACTTTTA+TGG | + | chr5_2:67245348-67245367 | Msa0783320:intron | 15.0% |
| !!! | AAATATTTTTAAAGATCCAA+CGG | + | chr5_2:67245388-67245407 | Msa0783320:intron | 15.0% |
| !!! | CATAATTTTTTGTAATATCA+CGG | + | chr5_2:67245571-67245590 | Msa0783320:intron | 15.0% |
| !! | TTAATATTGAAAAAGATTGA+AGG | - | chr5_2:67245739-67245758 | None:intergenic | 15.0% |
| !! | TTATATATTAAATATGAGAG+TGG | + | chr5_2:67246294-67246313 | Msa0783320:intron | 15.0% |
| !!! | TAATAACATTGAAATTTTTC+AGG | + | chr5_2:67246571-67246590 | Msa0783320:intron | 15.0% |
| !! | TAATACATTATTTATGTTTG+TGG | + | chr5_2:67247331-67247350 | Msa0783320:intron | 15.0% |
| !! | TAAGATGTAATTATAATAGT+TGG | + | chr5_2:67248300-67248319 | Msa0783320:three_prime_UTR | 15.0% |
| !! | AAGTTATACAAATAGAATAA+TGG | - | chr5_2:67248347-67248366 | None:intergenic | 15.0% |
| !! | CATTAATTGATTACTTCAAT+TGG | + | chr5_2:67245162-67245181 | Msa0783320:intron | 20.0% |
| !!! | AATCTATTTTTGAAACCTTT+TGG | - | chr5_2:67245274-67245293 | None:intergenic | 20.0% |
| !!! | TGACAATGTAAAATGTTTTA+AGG | - | chr5_2:67245312-67245331 | None:intergenic | 20.0% |
| !!! | TAAATGATAGTAATTTGTGA+TGG | - | chr5_2:67245337-67245356 | None:intergenic | 20.0% |
| !! | CGTGATATTACAAAAAATTA+TGG | - | chr5_2:67245573-67245592 | None:intergenic | 20.0% |
| !! | ATGGAAATGGAAAAAATAAA+GGG | - | chr5_2:67245716-67245735 | None:intergenic | 20.0% |
| !!! | AGATACTAATTTTTTATGCA+TGG | - | chr5_2:67245849-67245868 | None:intergenic | 20.0% |
| !! | GTATAATTAATTGAGAAAAG+TGG | - | chr5_2:67246445-67246464 | None:intergenic | 20.0% |
| !!! | TTAAAATTAGTCTTTGTTGT+TGG | - | chr5_2:67247193-67247212 | None:intergenic | 20.0% |
| !! | GATCTATTTAAAAGTAATTG+AGG | - | chr5_2:67247372-67247391 | None:intergenic | 20.0% |
| !! | TTTCACACATTAAATGTTAT+AGG | + | chr5_2:67247758-67247777 | Msa0783320:intron | 20.0% |
| !! | TGATATTTATAATATGGTAG+TGG | - | chr5_2:67247964-67247983 | None:intergenic | 20.0% |
| !! | CATAATTAGTTCACTTTATT+TGG | - | chr5_2:67248151-67248170 | None:intergenic | 20.0% |
| ! | TGATGTTATAGCTAAAATTG+CGG | + | chr5_2:67244733-67244752 | Msa0783320:intron | 25.0% |
| ! | ACAAAGAATGAGAACATAAT+TGG | - | chr5_2:67244784-67244803 | None:intergenic | 25.0% |
| !! | TGATATCCATCTTCTATTTT+CGG | - | chr5_2:67244882-67244901 | None:intergenic | 25.0% |
| !! | AATGATTTGGAGTTTGAATT+TGG | - | chr5_2:67245076-67245095 | None:intergenic | 25.0% |
| ! | TTCTTCTTCATTCAATGATT+TGG | - | chr5_2:67245089-67245108 | None:intergenic | 25.0% |
| !!! | AATTTGAACCAACTTTTTCT+TGG | - | chr5_2:67245217-67245236 | None:intergenic | 25.0% |
| !! | AAACTTTAAAGGTAAACTCA+TGG | - | chr5_2:67245241-67245260 | None:intergenic | 25.0% |
| ! | CAAAAAATTATGGTCAAACA+CGG | - | chr5_2:67245563-67245582 | None:intergenic | 25.0% |
| !!! | CATAAAAAGGTTTTAAACTG+TGG | - | chr5_2:67245602-67245621 | None:intergenic | 25.0% |
| !!! | CACAGTTTAAAACCTTTTTA+TGG | + | chr5_2:67245600-67245619 | Msa0783320:intron | 25.0% |
| ! | TGGAAATGGAAAAAATAAAG+GGG | - | chr5_2:67245715-67245734 | None:intergenic | 25.0% |
| ! | GATGGAAATGGAAAAAATAA+AGG | - | chr5_2:67245717-67245736 | None:intergenic | 25.0% |
| ! | TATTGAAAAAGATTGAAGGA+TGG | - | chr5_2:67245735-67245754 | None:intergenic | 25.0% |
| ! | TTTAAATGAGAAAACTTCAG+TGG | - | chr5_2:67246037-67246056 | None:intergenic | 25.0% |
| !! | ACTGAAGTTTTCTCATTTAA+AGG | + | chr5_2:67246036-67246055 | Msa0783320:CDS | 25.0% |
| ! | TCAGAAAGAATTATCAGTTA+AGG | + | chr5_2:67246246-67246265 | Msa0783320:intron | 25.0% |
| !! | ATAAAGTTTAAAGCATGTTC+TGG | - | chr5_2:67246278-67246297 | None:intergenic | 25.0% |
| ! | ATCAGAAAATAATAGAAGAG+TGG | + | chr5_2:67246327-67246346 | Msa0783320:intron | 25.0% |
| ! | AAATATGTAAAGAAGATGCT+TGG | + | chr5_2:67246354-67246373 | Msa0783320:intron | 25.0% |
| !!! | TTGAAATTTTTCAGGAAGAT+TGG | + | chr5_2:67246579-67246598 | Msa0783320:intron | 25.0% |
| !!! | TGAAATTTTTCAGGAAGATT+GGG | + | chr5_2:67246580-67246599 | Msa0783320:intron | 25.0% |
| ! | TTTGACATATAGTAAATTCG+AGG | + | chr5_2:67246804-67246823 | Msa0783320:intron | 25.0% |
| ! | TTGACATATAGTAAATTCGA+GGG | + | chr5_2:67246805-67246824 | Msa0783320:intron | 25.0% |
| ! | ACTAGCAAAACATAACAATA+TGG | + | chr5_2:67246913-67246932 | Msa0783320:CDS | 25.0% |
| ! | GAATAGTTATCAAAATGAAG+TGG | - | chr5_2:67247130-67247149 | None:intergenic | 25.0% |
| !! | TCATCATGAAATTGATAACT+TGG | - | chr5_2:67247250-67247269 | None:intergenic | 25.0% |
| ! | AATGAAGAAATTCTAACCTT+TGG | - | chr5_2:67247277-67247296 | None:intergenic | 25.0% |
| ! | TGTAATGTAACTATATGTGT+TGG | - | chr5_2:67247512-67247531 | None:intergenic | 25.0% |
| ! | ACATCAATATCATTTGATTG+TGG | - | chr5_2:67247651-67247670 | None:intergenic | 25.0% |
| !!! | CTCAACTATTGATTTGAAAT+CGG | + | chr5_2:67247840-67247859 | Msa0783320:intron | 25.0% |
| ! | AGAAATAAAGTAAAAGGACA+TGG | - | chr5_2:67247916-67247935 | None:intergenic | 25.0% |
| ! | AGCAAGAGAAATAAAGTAAA+AGG | - | chr5_2:67247922-67247941 | None:intergenic | 25.0% |
| !!! | TATCATTTTTATGTTGTTGC+AGG | + | chr5_2:67247979-67247998 | Msa0783320:intron | 25.0% |
| ! | TTGAAATTGGTAAGCTTTGA+TGG | + | chr5_2:67244485-67244504 | Msa0783320:five_prime_UTR | 30.0% |
| ! | TGAAATTGGTAAGCTTTGAT+GGG | + | chr5_2:67244486-67244505 | Msa0783320:five_prime_UTR | 30.0% |
| GTCTTCTCAAAAAATCATGT+TGG | + | chr5_2:67244534-67244553 | Msa0783320:five_prime_UTR | 30.0% | |
| ATTCATCCGAAAATAGAAGA+TGG | + | chr5_2:67244873-67244892 | Msa0783320:CDS | 30.0% | |
| TCAGTTAAATCATACTTGTG+TGG | + | chr5_2:67244899-67244918 | Msa0783320:CDS | 30.0% | |
| ACTCAACAAATCTTCTTGTA+TGG | - | chr5_2:67244999-67245018 | None:intergenic | 30.0% | |
| !! | GAAGATTTGTTGAGTGATAA+AGG | + | chr5_2:67245004-67245023 | Msa0783320:CDS | 30.0% |
| ATCAGCATATAGAAGTTTCA+AGG | + | chr5_2:67245126-67245145 | Msa0783320:CDS | 30.0% | |
| !!! | GTAAAATGTTTTAAGGTGCA+TGG | - | chr5_2:67245305-67245324 | None:intergenic | 30.0% |
| ACACATTGATCTCCATAAAA+AGG | - | chr5_2:67245615-67245634 | None:intergenic | 30.0% | |
| AAAAGATTGAAGGATGGAAA+TGG | - | chr5_2:67245729-67245748 | None:intergenic | 30.0% | |
| CATGCTAAATATTTCAGTTG+AGG | + | chr5_2:67245896-67245915 | Msa0783320:intron | 30.0% | |
| AAGTCCAGATAGAAAATCTA+TGG | + | chr5_2:67245981-67246000 | Msa0783320:CDS | 30.0% | |
| AACTAGAGCAATAAAGCAAA+AGG | + | chr5_2:67246101-67246120 | Msa0783320:CDS | 30.0% | |
| TTCAAGTGTGATGATTATGT+TGG | + | chr5_2:67246399-67246418 | Msa0783320:intron | 30.0% | |
| AGACGACATATACTATACAA+CGG | + | chr5_2:67246518-67246537 | Msa0783320:intron | 30.0% | |
| ! | AACCGATTTAGTCTCTAAAA+CGG | + | chr5_2:67246752-67246771 | Msa0783320:intron | 30.0% |
| !!! | AACCGTTTTAGAGACTAAAT+CGG | - | chr5_2:67246757-67246776 | None:intergenic | 30.0% |
| AATTCATATTCCCTCAACAA+CGG | + | chr5_2:67246838-67246857 | Msa0783320:intron | 30.0% | |
| ! | TATTTTACAACCGTTGTTGA+GGG | - | chr5_2:67246851-67246870 | None:intergenic | 30.0% |
| ATATGGAACAAAATATGAGC+TGG | + | chr5_2:67246930-67246949 | Msa0783320:CDS | 30.0% | |
| !! | ACAAGATTTTTAGATGCTTC+TGG | + | chr5_2:67247067-67247086 | Msa0783320:CDS | 30.0% |
| ATTTCATGATGAACATCCAA+AGG | + | chr5_2:67247258-67247277 | Msa0783320:CDS | 30.0% | |
| TGTTTAAACCTTGACTTAGA+TGG | - | chr5_2:67247311-67247330 | None:intergenic | 30.0% | |
| AATGTAACTATATGTGTTGG+TGG | - | chr5_2:67247509-67247528 | None:intergenic | 30.0% | |
| TTCAGAGTGTATCATAAACA+AGG | + | chr5_2:67247576-67247595 | Msa0783320:intron | 30.0% | |
| AAATCTTGATGTAATGAACC+CGG | + | chr5_2:67247708-67247727 | Msa0783320:intron | 30.0% | |
| AGTACATAATATCAAGTGCT+TGG | + | chr5_2:67248373-67248392 | Msa0783320:three_prime_UTR | 30.0% | |
| GAGAGAAGCAATACAAATTG+AGG | - | chr5_2:67244582-67244601 | None:intergenic | 35.0% | |
| ACCTCATTCCAAGAAAAAGT+TGG | + | chr5_2:67245206-67245225 | Msa0783320:intron | 35.0% | |
| !! | ACCAACTTTTTCTTGGAATG+AGG | - | chr5_2:67245210-67245229 | None:intergenic | 35.0% |
| GCATCACAAGCAAACTTTAA+AGG | - | chr5_2:67245252-67245271 | None:intergenic | 35.0% | |
| TGTCAATCAATCATAACCGT+TGG | - | chr5_2:67245407-67245426 | None:intergenic | 35.0% | |
| GAGATCATAAGCTCAGAAAA+TGG | + | chr5_2:67245931-67245950 | Msa0783320:CDS | 35.0% | |
| ! | GTAGCCATAGATTTTCTATC+TGG | - | chr5_2:67245988-67246007 | None:intergenic | 35.0% |
| ACATCAGTTGAAGTACAAAC+AGG | + | chr5_2:67246006-67246025 | Msa0783320:CDS | 35.0% | |
| CATCAGTTGAAGTACAAACA+GGG | + | chr5_2:67246007-67246026 | Msa0783320:CDS | 35.0% | |
| ! | TTTACAACAGTTTTCAGCAC+AGG | + | chr5_2:67246073-67246092 | Msa0783320:CDS | 35.0% |
| TGGAAGTTTAATCTTCCACT+AGG | + | chr5_2:67246419-67246438 | Msa0783320:intron | 35.0% | |
| GACATATACTATACAACGGA+GGG | + | chr5_2:67246522-67246541 | Msa0783320:intron | 35.0% | |
| GTAGCAATGTTTCGAAAATG+AGG | + | chr5_2:67246618-67246637 | Msa0783320:CDS | 35.0% | |
| ! | GTATTTTACAACCGTTGTTG+AGG | - | chr5_2:67246852-67246871 | None:intergenic | 35.0% |
| AACAAAATATGAGCTGGAGT+TGG | + | chr5_2:67246936-67246955 | Msa0783320:CDS | 35.0% | |
| !! | AGATTTTTAGATGCTTCTGG+TGG | + | chr5_2:67247070-67247089 | Msa0783320:CDS | 35.0% |
| CTCATAAACCATCTAAGTCA+AGG | + | chr5_2:67247300-67247319 | Msa0783320:intron | 35.0% | |
| !!! | AAGGTTTTAAATCACGACTG+TGG | + | chr5_2:67247595-67247614 | Msa0783320:intron | 35.0% |
| TATTGATGTGACTGCAATTG+TGG | + | chr5_2:67247662-67247681 | Msa0783320:intron | 35.0% | |
| ! | TTTTCTGAATCGTCTCATCT+TGG | - | chr5_2:67247792-67247811 | None:intergenic | 35.0% |
| TGGCTCAATCAATGTTAACA+AGG | + | chr5_2:67248015-67248034 | Msa0783320:CDS | 35.0% | |
| GTCTTGCTTATATCTTGCTT+TGG | - | chr5_2:67248055-67248074 | None:intergenic | 35.0% | |
| !! | TCACTCATTGGAAGTTTTGA+GGG | - | chr5_2:67248104-67248123 | None:intergenic | 35.0% |
| ! | TGTGTCTACTAGTATTGAGT+GGG | + | chr5_2:67248171-67248190 | Msa0783320:three_prime_UTR | 35.0% |
| CACTCATTACTAAAAGCTCT+GGG | - | chr5_2:67248225-67248244 | None:intergenic | 35.0% | |
| TCACTCATTACTAAAAGCTC+TGG | - | chr5_2:67248226-67248245 | None:intergenic | 35.0% | |
| !! | CTTTGATGGGTTTCACTGTT+GGG | + | chr5_2:67244499-67244518 | Msa0783320:five_prime_UTR | 40.0% |
| AAGCTGAATCTTCTTCTGCA+AGG | - | chr5_2:67244943-67244962 | None:intergenic | 40.0% | |
| CTCAACAGTTTCTTCACTCT+TGG | - | chr5_2:67245035-67245054 | None:intergenic | 40.0% | |
| ! | AGTTTGCTTGTGATGCCAAA+AGG | + | chr5_2:67245256-67245275 | Msa0783320:intron | 40.0% |
| AAGATTATAACTGCGACGTC+AGG | + | chr5_2:67245473-67245492 | Msa0783320:intron | 40.0% | |
| AGATTATAACTGCGACGTCA+GGG | + | chr5_2:67245474-67245493 | Msa0783320:intron | 40.0% | |
| TATGGAGATCAATGTGTGTG+TGG | + | chr5_2:67245618-67245637 | Msa0783320:intron | 40.0% | |
| GTAAAGAAGATGCTTGGTTC+TGG | + | chr5_2:67246360-67246379 | Msa0783320:intron | 40.0% | |
| AATTGAGAAAAGTGGCCTAG+TGG | - | chr5_2:67246437-67246456 | None:intergenic | 40.0% | |
| CGACATATACTATACAACGG+AGG | + | chr5_2:67246521-67246540 | Msa0783320:intron | 40.0% | |
| AATGAGGATGCAAGACAGAA+TGG | + | chr5_2:67246634-67246653 | Msa0783320:CDS | 40.0% | |
| ! | TACAAGGAGAGAAAGAGCAT+TGG | + | chr5_2:67246664-67246683 | Msa0783320:CDS | 40.0% |
| !! | AGTCTCTAAAACGGTTCATG+AGG | + | chr5_2:67246761-67246780 | Msa0783320:intron | 40.0% |
| TTGAAAGATGGATGGCAACT+CGG | + | chr5_2:67246960-67246979 | Msa0783320:CDS | 40.0% | |
| TTTCATACTGCTTCATCGCA+TGG | - | chr5_2:67247012-67247031 | None:intergenic | 40.0% | |
| GGTGAAGAAAAAGAGAGTTG+TGG | + | chr5_2:67247091-67247110 | Msa0783320:CDS | 40.0% | |
| AAGCTAGAAGAACTGTGTCT+AGG | + | chr5_2:67247212-67247231 | Msa0783320:CDS | 40.0% | |
| CGTGCAATAACTACGTCATT+AGG | - | chr5_2:67247883-67247902 | None:intergenic | 40.0% | |
| ! | GTCACTCATTGGAAGTTTTG+AGG | - | chr5_2:67248105-67248124 | None:intergenic | 40.0% |
| ACTTCCAATGAGTGACTTCT+TGG | + | chr5_2:67248109-67248128 | Msa0783320:exon | 40.0% | |
| ! | GTGTGTCTACTAGTATTGAG+TGG | + | chr5_2:67248170-67248189 | Msa0783320:three_prime_UTR | 40.0% |
| ATCAAGTGCTTGGTATGAGA+TGG | + | chr5_2:67248383-67248402 | Msa0783320:three_prime_UTR | 40.0% | |
| !! | GCTTTGATGGGTTTCACTGT+TGG | + | chr5_2:67244498-67244517 | Msa0783320:five_prime_UTR | 45.0% |
| ! | ACCTCAAAGCATTAGCGTTG+AGG | + | chr5_2:67244689-67244708 | Msa0783320:intron | 45.0% |
| ACCTCAACGCTAATGCTTTG+AGG | - | chr5_2:67244693-67244712 | None:intergenic | 45.0% | |
| ACACGGTTGACAACTTGACA+TGG | - | chr5_2:67245546-67245565 | None:intergenic | 45.0% | |
| ACAGAATGGAAGCAGCTACA+AGG | + | chr5_2:67246648-67246667 | Msa0783320:CDS | 45.0% | |
| GGCTTATGCTTTCTCACAAC+AGG | + | chr5_2:67246685-67246704 | Msa0783320:CDS | 45.0% | |
| TATTCGTAGCTGCAACAACG+AGG | - | chr5_2:67246879-67246898 | None:intergenic | 45.0% | |
| !! | GAGTTGGCTTGAAAGATGGA+TGG | + | chr5_2:67246952-67246971 | Msa0783320:CDS | 45.0% |
| TCGGCTTCAAGACACTTCAT+CGG | + | chr5_2:67246979-67246998 | Msa0783320:CDS | 45.0% | |
| CTAGAAGAACTGTGTCTAGG+AGG | + | chr5_2:67247215-67247234 | Msa0783320:CDS | 45.0% | |
| CACACACAGTTACATTCACG+TGG | - | chr5_2:67247486-67247505 | None:intergenic | 45.0% | |
| TGTGACTGCAATTGTGGTCA+TGG | + | chr5_2:67247668-67247687 | Msa0783320:intron | 45.0% | |
| TTGCAGGCATGCATGAAAGA+TGG | + | chr5_2:67247995-67248014 | Msa0783320:intron | 45.0% | |
| AGAGCCAAGAAGTCACTCAT+TGG | - | chr5_2:67248116-67248135 | None:intergenic | 45.0% | |
| !! | AATTATTATAAAATAAAACT+TGG | + | chr5_2:67246180-67246199 | Msa0783320:intron | 5.0% |
| !! | TAAAAATGATATTTATAATA+TGG | - | chr5_2:67247970-67247989 | None:intergenic | 5.0% |
| ! | GATGGGTTTCACTGTTGGGT+TGG | + | chr5_2:67244503-67244522 | Msa0783320:five_prime_UTR | 50.0% |
| ! | AACGGAGGGAGTGTGACATA+AGG | + | chr5_2:67246536-67246555 | Msa0783320:intron | 50.0% |
| !! | GCTGGAGTTGGCTTGAAAGA+TGG | + | chr5_2:67246948-67246967 | Msa0783320:CDS | 50.0% |
| CTGCAATTGTGGTCATGGTG+TGG | + | chr5_2:67247673-67247692 | Msa0783320:intron | 50.0% | |
| AGCTCCAAGTCTAGACGATC+CGG | - | chr5_2:67247730-67247749 | None:intergenic | 50.0% | |
| GAACCCGGATCGTCTAGACT+TGG | + | chr5_2:67247723-67247742 | Msa0783320:intron | 55.0% | |
| GCTCCAAGTCTAGACGATCC+GGG | - | chr5_2:67247729-67247748 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 67244473 | 67248410 | 67244473 | ID=Msa0783320;Name=Msa0783320 |
| chr5_2 | mRNA | 67244473 | 67248410 | 67244473 | ID=Msa0783320-mRNA-1;Parent=Msa0783320;Name=Msa0783320-mRNA-1;_AED=0.01;_eAED=0.01;_QI=148|1|1|1|0.8|0.66|6|287|373 |
| chr5_2 | exon | 67244473 | 67244572 | 67244473 | ID=Msa0783320-mRNA-1:exon:20177;Parent=Msa0783320-mRNA-1 |
| chr5_2 | exon | 67244815 | 67245147 | 67244815 | ID=Msa0783320-mRNA-1:exon:20178;Parent=Msa0783320-mRNA-1 |
| chr5_2 | exon | 67245913 | 67246122 | 67245913 | ID=Msa0783320-mRNA-1:exon:20179;Parent=Msa0783320-mRNA-1 |
| chr5_2 | exon | 67246593 | 67246706 | 67246593 | ID=Msa0783320-mRNA-1:exon:20180;Parent=Msa0783320-mRNA-1 |
| chr5_2 | exon | 67246890 | 67247279 | 67246890 | ID=Msa0783320-mRNA-1:exon:20181;Parent=Msa0783320-mRNA-1 |
| chr5_2 | exon | 67248001 | 67248410 | 67248001 | ID=Msa0783320-mRNA-1:exon:20182;Parent=Msa0783320-mRNA-1 |
| chr5_2 | five_prime_UTR | 67244473 | 67244572 | 67244473 | ID=Msa0783320-mRNA-1:five_prime_utr;Parent=Msa0783320-mRNA-1 |
| chr5_2 | five_prime_UTR | 67244815 | 67244862 | 67244815 | ID=Msa0783320-mRNA-1:five_prime_utr;Parent=Msa0783320-mRNA-1 |
| chr5_2 | CDS | 67244863 | 67245147 | 67244863 | ID=Msa0783320-mRNA-1:cds;Parent=Msa0783320-mRNA-1 |
| chr5_2 | CDS | 67245913 | 67246122 | 67245913 | ID=Msa0783320-mRNA-1:cds;Parent=Msa0783320-mRNA-1 |
| chr5_2 | CDS | 67246593 | 67246706 | 67246593 | ID=Msa0783320-mRNA-1:cds;Parent=Msa0783320-mRNA-1 |
| chr5_2 | CDS | 67246890 | 67247279 | 67246890 | ID=Msa0783320-mRNA-1:cds;Parent=Msa0783320-mRNA-1 |
| chr5_2 | CDS | 67248001 | 67248123 | 67248001 | ID=Msa0783320-mRNA-1:cds;Parent=Msa0783320-mRNA-1 |
| chr5_2 | three_prime_UTR | 67248124 | 67248410 | 67248124 | ID=Msa0783320-mRNA-1:three_prime_utr;Parent=Msa0783320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
