AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0765240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0765240 MtrunA17_Chr5g0416161 87.003 754 60 4 1 752 1 718 0.0 1194
Msa0765240 MtrunA17_Chr4g0060381 32.696 523 285 18 4 497 2 486 1.13e-47 178
Msa0765240 MtrunA17_Chr4g0060381 46.667 120 60 2 636 753 461 578 2.58e-18 89.4
Msa0765240 MtrunA17_Chr1g0156121 38.060 134 82 1 121 253 126 259 4.00e-17 86.3
Msa0765240 MtrunA17_Chr6g0472551 32.680 153 74 4 120 260 118 253 6.98e-14 74.7
Msa0765240 MtrunA17_Chr1g0203711 33.103 145 81 4 116 253 110 245 5.84e-13 72.0
Msa0765240 MtrunA17_Chr8g0389781 42.857 63 36 0 121 183 128 190 1.83e-11 67.0
Msa0765240 MtrunA17_Chr1g0204901 44.118 68 38 0 121 188 138 205 1.87e-11 67.0
Msa0765240 MtrunA17_Chr8g0346021 43.056 72 32 1 113 175 112 183 8.76e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0765240 AT1G14380.6 31.702 429 225 11 4 405 2 389 7.42e-41 159
Msa0765240 AT1G14380.6 30.548 347 197 13 432 751 265 594 4.37e-18 89.4
Msa0765240 AT1G14380.5 31.702 429 225 11 4 405 2 389 7.42e-41 159
Msa0765240 AT1G14380.5 30.548 347 197 13 432 751 265 594 4.37e-18 89.4
Msa0765240 AT1G14380.2 31.702 429 225 11 4 405 2 389 7.42e-41 159
Msa0765240 AT1G14380.2 30.548 347 197 13 432 751 265 594 4.37e-18 89.4
Msa0765240 AT1G14380.7 33.618 351 185 9 4 344 2 314 1.30e-40 158
Msa0765240 AT1G14380.7 48.148 108 51 3 647 751 461 566 6.47e-18 88.6
Msa0765240 AT1G14380.1 33.618 351 185 9 4 344 2 314 1.39e-40 159
Msa0765240 AT1G14380.1 44.538 119 56 4 647 762 551 662 4.45e-18 89.4
Msa0765240 AT1G14380.3 33.618 351 185 9 4 344 2 314 1.39e-40 159
Msa0765240 AT1G14380.3 44.538 119 56 4 647 762 551 662 4.45e-18 89.4
Msa0765240 AT1G14380.4 33.618 351 185 9 4 344 2 314 1.39e-40 159
Msa0765240 AT1G14380.4 44.538 119 56 4 647 762 551 662 4.45e-18 89.4
Msa0765240 AT1G18840.1 40.086 232 112 6 121 329 111 338 1.26e-38 152
Msa0765240 AT1G18840.3 40.086 232 112 6 121 329 111 338 1.26e-38 152
Msa0765240 AT1G18840.2 40.086 232 112 6 121 329 111 338 1.26e-38 152
Msa0765240 AT2G02790.2 33.777 376 192 9 1 359 1 336 7.16e-37 147
Msa0765240 AT2G02790.2 51.485 101 48 1 648 747 485 585 2.39e-21 99.8
Msa0765240 AT2G02790.3 33.777 376 192 9 1 359 1 336 7.16e-37 147
Msa0765240 AT2G02790.3 51.485 101 48 1 648 747 485 585 2.39e-21 99.8
Msa0765240 AT1G74690.1 34.085 355 196 11 1 336 1 336 1.01e-36 147
Msa0765240 AT2G02790.1 33.777 376 192 9 1 359 1 336 2.07e-36 146
Msa0765240 AT2G02790.1 48.333 120 56 4 648 762 485 603 1.21e-22 103
Msa0765240 AT1G19870.2 36.232 138 77 3 117 253 29 156 9.38e-18 88.2
Msa0765240 AT1G19870.1 36.232 138 77 3 117 253 212 339 1.21e-17 88.2
Msa0765240 AT4G14750.1 31.053 190 103 7 1 183 1 169 4.97e-13 72.0
Msa0765240 AT4G14750.2 31.053 190 103 7 1 183 60 228 1.22e-12 71.2
Msa0765240 AT4G14750.3 31.053 190 103 7 1 183 60 228 1.38e-12 71.2
Msa0765240 AT5G07240.1 49.153 59 30 0 121 179 108 166 3.41e-11 66.6
Msa0765240 AT4G10640.1 39.326 89 45 1 95 174 67 155 4.09e-11 66.2
Msa0765240 AT5G07240.2 49.153 59 30 0 121 179 154 212 4.41e-11 66.2

Find 176 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAGTTTCTTCTTCAATTT+TGG 0.131596 5_2:-25815106 None:intergenic
GTTAAGAGATTGTTGGATTA+AGG 0.158523 5_2:-25812115 None:intergenic
GTTGGACAAGGTCAAGATTT+TGG 0.163311 5_2:+25815074 Msa0765240:CDS
GTAACAATGCCGATAGATTT+TGG 0.176558 5_2:-25814252 None:intergenic
TCCAAGACCTTTCTCTTCTT+TGG 0.182427 5_2:-25815794 None:intergenic
CTTTCACGGCAGGTGATTTC+CGG 0.192974 5_2:-25815168 None:intergenic
TCTGAGACCTTTCTCTTCTT+TGG 0.196588 5_2:-25816100 None:intergenic
CTGCCATTCAAGCTCTTCTT+TGG 0.209892 5_2:-25816075 None:intergenic
TGTCAATAGACCGTGTAATT+TGG 0.224655 5_2:+25816872 Msa0765240:CDS
TCCAAGACTGTTCTCTTCTT+TGG 0.245150 5_2:-25815641 None:intergenic
CCACCATTTGAGCTCTTCTT+TGG 0.254127 5_2:-25815538 None:intergenic
GGCTTATCGTTGTTCTCTTC+TGG 0.254394 5_2:-25815673 None:intergenic
AAAGAATCCACAGTTGAAAT+TGG 0.265796 5_2:-25813036 None:intergenic
CCACCATTTAAGCTCTTCTT+TGG 0.273624 5_2:-25815847 None:intergenic
CTGCCATTTAAGCTCTTCTT+TGG 0.277905 5_2:-25815616 None:intergenic
TCCAAGACCTTTCTCTGCTT+TGG 0.279284 5_2:-25816022 None:intergenic
CCGCCACTTACGCTCTTCTT+TGG 0.286225 5_2:-25815769 None:intergenic
CAAATATCCGCACCAATATC+TGG 0.291168 5_2:+25813060 Msa0765240:CDS
TTAAGAGATTGTTGGATTAA+GGG 0.307062 5_2:-25812114 None:intergenic
CCGCCATTTAAGCTCTTCTT+TGG 0.309644 5_2:-25815694 None:intergenic
CCGCCATTTAAGCTCTTCTT+TGG 0.309644 5_2:-25815922 None:intergenic
CCGCCACTTAAGCTCTTCTT+TGG 0.309857 5_2:-25815997 None:intergenic
AAGCCAAAGAAGAGCTTAAA+TGG 0.320805 5_2:+25815613 Msa0765240:CDS
AAGCCAAAGAAGAGCTTAAA+TGG 0.320805 5_2:+25815691 Msa0765240:CDS
AAGCCAAAGAAGAGCTTAAA+TGG 0.320805 5_2:+25815919 Msa0765240:CDS
AAGCCAAAGAAGAGCTTAAA+TGG 0.322191 5_2:+25815844 Msa0765240:CDS
GCAACATTAGCTCCAGATAT+TGG 0.324752 5_2:-25813072 None:intergenic
CTGAAAAGGCACAAGTTAAA+AGG 0.331400 5_2:+25815140 Msa0765240:CDS
GTCTGCTTGCAGAGGCTATC+AGG 0.334525 5_2:+25813257 Msa0765240:CDS
AATGTTAGACGTTCTGATAC+TGG 0.344668 5_2:+25813957 Msa0765240:CDS
CAGGCAGTGAAGCTCTTCTT+TGG 0.344810 5_2:-25816257 None:intergenic
GCTGATGAGGGCTCAAGTTC+TGG 0.345997 5_2:+25815190 Msa0765240:CDS
GCCATATAACTCGGCACTCT+TGG 0.374824 5_2:-25816324 None:intergenic
CAATGTCAGGCCAGACTGTT+CGG 0.383092 5_2:-25816906 None:intergenic
CCTCTCAAATGGAGAGGAAA+AGG 0.383865 5_2:+25813152 Msa0765240:CDS
TCCAAGAGTGCCGAGTTATA+TGG 0.386156 5_2:+25816323 Msa0765240:CDS
ATGGCTCTAAATTGCTGCTT+TGG 0.386366 5_2:-25816850 None:intergenic
AAGGTAGGAGATGAAGAAAT+AGG 0.392384 5_2:+25816186 Msa0765240:CDS
TGACTCGGTGTCGGCTGAAA+AGG 0.392618 5_2:+25815126 Msa0765240:CDS
ATGATATCAGTAGCAAATCT+TGG 0.399401 5_2:-25816390 None:intergenic
TGATCTTGGAGAACCTTACT+TGG 0.410168 5_2:+25815033 Msa0765240:CDS
AACTTCATTGAAGGCTCGTC+AGG 0.411117 5_2:+25813803 Msa0765240:intron
GTCAAAGAAGAGAAAGATCT+TGG 0.414222 5_2:+25815946 Msa0765240:CDS
TGAGCCCTCATCAGCTTTCA+CGG 0.420821 5_2:-25815182 None:intergenic
TCTTCACTTAACAGCAAGTC+AGG 0.421600 5_2:+25816450 Msa0765240:CDS
TGATATCAGTAGCAAATCTT+GGG 0.424517 5_2:-25816389 None:intergenic
GTCAAAGAAGAGAAAGGTCT+TGG 0.427941 5_2:+25815562 Msa0765240:CDS
GAAAACAGTGATTTCAGAAA+AGG 0.429652 5_2:+25813095 Msa0765240:CDS
ATAAATCTCTGTCATCTTCA+AGG 0.431656 5_2:+25816535 Msa0765240:CDS
CTATCGCTAAATAGTGATCT+TGG 0.432037 5_2:+25815019 Msa0765240:CDS
TTCTGTCCAAGACCTTTCTC+AGG 0.432297 5_2:-25815490 None:intergenic
GTCAAGGAAGAGAAAGATCT+TGG 0.435270 5_2:+25815718 Msa0765240:CDS
GCCAAAGAAGAGAAAGGTCT+TGG 0.435662 5_2:+25815793 Msa0765240:CDS
TCTTGCCCTGAGAAAGGTCT+TGG 0.436010 5_2:+25815484 Msa0765240:CDS
GATGTTTCAGAGCAGGGGCC+AGG 0.436095 5_2:+25815412 Msa0765240:CDS
AAGGAAGAAGTCCTGGGAAA+TGG 0.438773 5_2:+25812731 Msa0765240:CDS
GCCAAAGCAGAGAAAGGTCT+TGG 0.440912 5_2:+25816021 Msa0765240:CDS
CTTCGAAGTGGCTTGACCGT+TGG 0.453863 5_2:+25815056 Msa0765240:CDS
AGAAAAGAAAACACAGCTCT+AGG 0.454796 5_2:+25815365 Msa0765240:CDS
TTCAAAGAAGAGAAAGATGT+TGG 0.458543 5_2:+25815871 Msa0765240:CDS
GAGAGGGATATCCTCTCAAA+TGG 0.462294 5_2:+25813141 Msa0765240:CDS
AAGCCAAAGAAGAGCTCAAA+TGG 0.466804 5_2:+25815535 Msa0765240:CDS
CAGACAGAAAGCACTAGAAC+AGG 0.470431 5_2:+25816119 Msa0765240:CDS
TTGTCTATTCCCGAACAGTC+TGG 0.471756 5_2:+25816896 Msa0765240:CDS
CTGATAACTTTGAGCGGAAG+AGG 0.471793 5_2:+25816498 Msa0765240:CDS
AAAGGATTCAAATCACTCAT+TGG 0.473168 5_2:+25815240 Msa0765240:CDS
TTTCACGGCAGGTGATTTCC+GGG 0.473542 5_2:-25815167 None:intergenic
CTCTGTCATCTTCAAGGGAC+GGG 0.476009 5_2:+25816541 Msa0765240:CDS
ATCGAGTAACAAGGATGCAC+TGG 0.476424 5_2:+25812987 Msa0765240:CDS
ATGGGGAAAGGAAGAAGTCC+TGG 0.479376 5_2:+25812724 Msa0765240:CDS
AGCTCTTATTCGTGGTCACT+TGG 0.479958 5_2:+25813860 Msa0765240:CDS
AAAGCGCAAGAAGAGAATAA+TGG 0.480554 5_2:+25815820 Msa0765240:CDS
AAAGCGCAAGAAGAGAATAA+TGG 0.480554 5_2:+25816048 Msa0765240:CDS
CCCTCATCAGCTTTCACGGC+AGG 0.480653 5_2:-25815178 None:intergenic
AAGCCAAAGAAGAGCTTGAA+TGG 0.481386 5_2:+25816072 Msa0765240:CDS
TCTTGATCATTAAAATTAGC+AGG 0.485135 5_2:-25816276 None:intergenic
AGATCACTATTTAGCGATAG+AGG 0.485199 5_2:-25815016 None:intergenic
TCACTCATTGGTGTCAGCTC+AGG 0.487455 5_2:+25815252 Msa0765240:CDS
GGGCAAGACTCTTCTGACTT+TGG 0.487465 5_2:-25815469 None:intergenic
AGCCACTTCGAAGCCAAGTA+AGG 0.490411 5_2:-25815046 None:intergenic
GAAGTCCTGGGAAATGGATC+AGG 0.490967 5_2:+25812737 Msa0765240:CDS
TGTTACTGATGTTTCAGAGC+AGG 0.494693 5_2:+25815405 Msa0765240:CDS
AATGTCAGGCCAGACTGTTC+GGG 0.495236 5_2:-25816905 None:intergenic
AATCAGCAAAAGCTAGGCTA+AGG 0.506190 5_2:+25816355 Msa0765240:CDS
GCTGCTTTAGAGCCAATGTC+AGG 0.506628 5_2:-25816919 None:intergenic
TGGATCAGGAGCTTACTCTC+AGG 0.507002 5_2:+25812751 Msa0765240:CDS
CGAACAGTCTGGCCTGACAT+TGG 0.507026 5_2:+25816907 Msa0765240:CDS
AAATGGAGAGGAAAAGGGTC+AGG 0.512791 5_2:+25813158 Msa0765240:CDS
ACCAAAGAAGAGAACAGTCT+TGG 0.521726 5_2:+25815640 Msa0765240:CDS
GAAGAGTCTTGCCCTGAGAA+AGG 0.521918 5_2:+25815478 Msa0765240:CDS
AAGCCAAAGAAGAGCTTAAG+TGG 0.524060 5_2:+25815994 Msa0765240:CDS
CTCTCAAATGGAGAGGAAAA+GGG 0.525376 5_2:+25813153 Msa0765240:CDS
TCTTGAGACACTCAGGCTTA+CGG 0.526578 5_2:+25813215 Msa0765240:CDS
ATGTTAGACGTTCTGATACT+GGG 0.528849 5_2:+25813958 Msa0765240:CDS
CTTACAGACTAGTGTGAAGA+AGG 0.530864 5_2:+25816167 Msa0765240:CDS
GTTACTGATGTTTCAGAGCA+GGG 0.534754 5_2:+25815406 Msa0765240:CDS
CAGCTGCAAGCTCTTATTCG+TGG 0.539642 5_2:+25813852 Msa0765240:CDS
CAGACTAGTGTGAAGAAGGT+AGG 0.543608 5_2:+25816171 Msa0765240:CDS
TAACTCGGCACTCTTGGACT+TGG 0.545077 5_2:-25816318 None:intergenic
ATTGTTGACGTGATGGGGAA+AGG 0.545375 5_2:+25812712 Msa0765240:exon
TTCTGCTTTATATTGTGTGA+AGG 0.546023 5_2:+25813899 Msa0765240:CDS
ACTCAATGTCCAAAATCTAT+CGG 0.549474 5_2:+25814243 Msa0765240:CDS
GAAAAGAAAACACAGCTCTA+GGG 0.549824 5_2:+25815366 Msa0765240:CDS
GAGCTTAAATGGCGGTGTCA+AGG 0.550330 5_2:+25815702 Msa0765240:CDS
AGAAAATGCCTTTGTTCACC+AGG 0.551079 5_2:+25814299 Msa0765240:CDS
GGCGGTGCCAAAGCAGAGAA+AGG 0.554921 5_2:+25816015 Msa0765240:CDS
GATGCAGCATTAGCAACGGC+TGG 0.555169 5_2:-25813183 None:intergenic
GCAGCGATTGTTGACGTGAT+GGG 0.556489 5_2:+25812706 Msa0765240:exon
CGACTGAATCAGCAAAAGCT+AGG 0.556769 5_2:+25816349 Msa0765240:CDS
AATTGTTAAAGTGCAAGCAT+TGG 0.557493 5_2:+25813923 Msa0765240:CDS
TCATCTTCAAGGGACGGGAC+TGG 0.557763 5_2:+25816546 Msa0765240:CDS
ACGTTCTGATACTGGGCTTG+AGG 0.558336 5_2:+25813965 Msa0765240:CDS
AAGCCAAAGAAGAGCGTAAG+TGG 0.558887 5_2:+25815766 Msa0765240:CDS
TAATAAGTCATCACATGAGA+GGG 0.560618 5_2:+25813125 Msa0765240:CDS
GTCTAATCCAATTTCAACTG+TGG 0.561495 5_2:+25813029 Msa0765240:CDS
TCTGCTTTATATTGTGTGAA+GGG 0.562073 5_2:+25813900 Msa0765240:CDS
ACCTGCCGTGAAAGCTGATG+AGG 0.565649 5_2:+25815177 Msa0765240:CDS
GGTGGTGTCAAAGAAGAGAA+AGG 0.565727 5_2:+25815556 Msa0765240:CDS
ATCAGCAAAAGCTAGGCTAA+GGG 0.567639 5_2:+25816356 Msa0765240:CDS
AAAGCTAGGCTAAGGGGACA+AGG 0.569700 5_2:+25816363 Msa0765240:CDS
GAAGAAGAATCCAATGGTGA+AGG 0.571660 5_2:-25812187 None:intergenic
TAAATCTCTGTCATCTTCAA+GGG 0.577185 5_2:+25816536 Msa0765240:CDS
GGCAGTGCCAAAGAAGAGAA+AGG 0.578082 5_2:+25816093 Msa0765240:CDS
AAGATGATCTTGAGACACTC+AGG 0.580261 5_2:+25813208 Msa0765240:CDS
CTAGTCTGTAAGACAGCAGT+AGG 0.581177 5_2:-25816156 None:intergenic
CAGCGATTGTTGACGTGATG+GGG 0.586351 5_2:+25812707 Msa0765240:exon
GGATCAGGAGCTTACTCTCA+GGG 0.586360 5_2:+25812752 Msa0765240:CDS
GAAGAAACTTGACTCGGTGT+CGG 0.588481 5_2:+25815117 Msa0765240:CDS
TCTGTCCAAGACCTTTCTCA+GGG 0.589944 5_2:-25815489 None:intergenic
AAGCTCCTGATCCATTTCCC+AGG 0.592908 5_2:-25812742 None:intergenic
CCTGCCGTGAAAGCTGATGA+GGG 0.596782 5_2:+25815178 Msa0765240:CDS
AACCTTACTTGGCTTCGAAG+TGG 0.602005 5_2:+25815044 Msa0765240:CDS
CACAAGTTAAAAGGACTACC+CGG 0.602610 5_2:+25815149 Msa0765240:CDS
AAAATCTTGACCTTGTCCAA+CGG 0.603009 5_2:-25815072 None:intergenic
GGCGGTGCCAAAGAAGAGAA+AGG 0.603794 5_2:+25815787 Msa0765240:CDS
AGATGAAAGTGAATGCCTCC+TGG 0.603995 5_2:-25816430 None:intergenic
TTAATAAGTCATCACATGAG+AGG 0.605684 5_2:+25813124 Msa0765240:CDS
AAACTTCAGTCTGCTTGCAG+AGG 0.606146 5_2:+25813249 Msa0765240:CDS
AGCAGCGATTGTTGACGTGA+TGG 0.609674 5_2:+25812705 Msa0765240:exon
TCTCTGTCATCTTCAAGGGA+CGG 0.611971 5_2:+25816540 Msa0765240:CDS
AGTGGCTTGACCGTTGGACA+AGG 0.615551 5_2:+25815062 Msa0765240:CDS
TCGAGTAACAAGGATGCACT+GGG 0.620971 5_2:+25812988 Msa0765240:CDS
TTACTGATGTTTCAGAGCAG+GGG 0.623308 5_2:+25815407 Msa0765240:CDS
TGAGGTCCTGAAAGTTCGCA+AGG 0.629107 5_2:+25813983 Msa0765240:CDS
TTAGCGATAGAGGAAACGCA+TGG 0.630241 5_2:-25815006 None:intergenic
ATCAGGAGCTTACTCTCAGG+GGG 0.630920 5_2:+25812754 Msa0765240:CDS
GGAGTTAGCGAAGACTTGCA+TGG 0.635339 5_2:+25816207 Msa0765240:CDS
TTGAGATGCAGCATTAGCAA+CGG 0.635874 5_2:-25813187 None:intergenic
TGAGCGGAAGAGGAGTTGCA+AGG 0.636898 5_2:+25816508 Msa0765240:CDS
GGATATCCTCTCAAATGGAG+AGG 0.637059 5_2:+25813146 Msa0765240:CDS
GAAGAGGAAGAAGAATCCAA+TGG 0.637357 5_2:-25812193 None:intergenic
AAAGTGCAAGCATTGGCTCG+TGG 0.637631 5_2:+25813930 Msa0765240:CDS
TCAGCAAAAGCTAGGCTAAG+GGG 0.647323 5_2:+25816357 Msa0765240:CDS
AGTTCCTACCTGGTGAACAA+AGG 0.648285 5_2:-25814307 None:intergenic
AATTACACGGTCTATTGACA+TGG 0.648568 5_2:-25816869 None:intergenic
GAAAAGCTGATAACTTTGAG+CGG 0.650199 5_2:+25816492 Msa0765240:CDS
TGGGGAAAGGAAGAAGTCCT+GGG 0.653494 5_2:+25812725 Msa0765240:CDS
CGGCATTGTTACATCTACAC+CGG 0.653591 5_2:+25814263 Msa0765240:CDS
CCAAAGAAGAGCTTAAATGG+TGG 0.659702 5_2:+25815847 Msa0765240:CDS
GTAGAAATCATCGAGTAACA+AGG 0.661255 5_2:+25812978 Msa0765240:intron
TCAGTCGGAGCCATATAACT+CGG 0.661998 5_2:-25816333 None:intergenic
CCAAAGAAGAGCTCAAATGG+TGG 0.663791 5_2:+25815538 Msa0765240:CDS
GATATCAGTAGCAAATCTTG+GGG 0.666334 5_2:-25816388 None:intergenic
CAGAAAGCACTAGAACAGGA+AGG 0.674738 5_2:+25816123 Msa0765240:CDS
TAGCGATAGAGGAAACGCAT+GGG 0.677774 5_2:-25815005 None:intergenic
AATAGACAATCCAAATTACA+CGG 0.679397 5_2:-25816882 None:intergenic
TGAGAAAATGAAAGAAACGA+CGG 0.688170 5_2:+25815444 Msa0765240:CDS
ATTGAAGAAGAAACTTGACT+CGG 0.691260 5_2:+25815111 Msa0765240:CDS
CCAAAGAAGAGCGTAAGTGG+CGG 0.702919 5_2:+25815769 Msa0765240:CDS
GATCAGGAGCTTACTCTCAG+GGG 0.703576 5_2:+25812753 Msa0765240:CDS
CCAAAGAAGAGCTTAAGTGG+CGG 0.710668 5_2:+25815997 Msa0765240:CDS
ATTAGCTCCAGATATTGGTG+CGG 0.724836 5_2:-25813067 None:intergenic
CCAAAGAAGAGCTTAAATGG+CGG 0.731508 5_2:+25815694 Msa0765240:CDS
CCAAAGAAGAGCTTAAATGG+CGG 0.731508 5_2:+25815922 Msa0765240:CDS
GTTAGCGAAGACTTGCATGG+CGG 0.762968 5_2:+25816210 Msa0765240:CDS
TCAGGAGCTTACTCTCAGGG+GGG 0.780339 5_2:+25812755 Msa0765240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAATTTGAATTTTGAAAT+AGG + chr5_2:25812924-25812943 Msa0765240:intron 10.0%
!!! TATTGTTTAATTTAGTAATG+AGG + chr5_2:25812407-25812426 Msa0765240:intron 15.0%
!! AAATGGGTATATATAATATT+AGG + chr5_2:25812538-25812557 Msa0765240:intron 15.0%
!!! TGTTATGTAAATTTTATAGT+TGG + chr5_2:25812589-25812608 Msa0765240:intron 15.0%
!! AATAAATGGTATATAATTGA+TGG + chr5_2:25812629-25812648 Msa0765240:intron 15.0%
!! TAATTATTTGAAAAATGTCA+TGG + chr5_2:25813494-25813513 Msa0765240:intron 15.0%
!! TATTTAAACTAAATTTGCAT+AGG + chr5_2:25813588-25813607 Msa0765240:intron 15.0%
!!! TTTTGTTTATGCAATTTTAT+TGG + chr5_2:25813643-25813662 Msa0765240:intron 15.0%
!! ATTTAGTGTTATGATATATT+TGG + chr5_2:25813671-25813690 Msa0765240:intron 15.0%
!! TCATTATTTATCATCTATAT+CGG - chr5_2:25814352-25814371 None:intergenic 15.0%
!!! AAATAATGATAGATTGTTTT+AGG + chr5_2:25814363-25814382 Msa0765240:intron 15.0%
!! AGTATTAATTGAATTAAAGA+AGG + chr5_2:25814513-25814532 Msa0765240:intron 15.0%
!!! AATTTTATATTCGATATGAA+TGG + chr5_2:25814829-25814848 Msa0765240:intron 15.0%
!!! TGAATTTTTCAATTTCTTCA+TGG + chr5_2:25812438-25812457 Msa0765240:intron 20.0%
!!! TTATTAGTCTTACATGAAAA+TGG + chr5_2:25812495-25812514 Msa0765240:intron 20.0%
!!! TATTAGTCTTACATGAAAAT+GGG + chr5_2:25812496-25812515 Msa0765240:intron 20.0%
!!! ATTTTCTACTTGTTTGAAAA+TGG + chr5_2:25812521-25812540 Msa0765240:intron 20.0%
!!! TTTTCTACTTGTTTGAAAAT+GGG + chr5_2:25812522-25812541 Msa0765240:intron 20.0%
!! TCTGATTTACTTTGAATAAA+TGG + chr5_2:25812615-25812634 Msa0765240:intron 20.0%
!! TGTTATAAGGAAACTATTAA+AGG + chr5_2:25812890-25812909 Msa0765240:intron 20.0%
!! AACATAAATGTAAAATTCCA+GGG - chr5_2:25813291-25813310 None:intergenic 20.0%
!!! AATTTTACATTTATGTTGTG+CGG + chr5_2:25813294-25813313 Msa0765240:intron 20.0%
!! AAATAAAAGTGAAATAGATG+TGG - chr5_2:25813573-25813592 None:intergenic 20.0%
!! TGTTCTTTATGTATGATTAA+TGG + chr5_2:25813775-25813794 Msa0765240:intron 20.0%
!! TTAGTCATATTTCAGATATT+AGG - chr5_2:25814393-25814412 None:intergenic 20.0%
!!! GTTGATAATTTTATTGTTCA+TGG + chr5_2:25814449-25814468 Msa0765240:intron 20.0%
!!! ATAATTTTATTGTTCATGGA+AGG + chr5_2:25814453-25814472 Msa0765240:intron 20.0%
!! TATATAACAAAGACAAATTC+AGG - chr5_2:25814576-25814595 None:intergenic 20.0%
!! GAAATTATATGAAGAAACTT+CGG - chr5_2:25814698-25814717 None:intergenic 20.0%
!! TCTTCATATAATTTCAGTTA+AGG + chr5_2:25814703-25814722 Msa0765240:intron 20.0%
!!! GTTTTGAAATTAAATTGTCT+TGG + chr5_2:25814918-25814937 Msa0765240:intron 20.0%
!!! TTTTCTCAATTTCTTTCTTT+GGG - chr5_2:25815288-25815307 None:intergenic 20.0%
!! CAATCACTAAGTAAATTAAA+AGG - chr5_2:25816604-25816623 None:intergenic 20.0%
!!! CTTTTAATTTACTTAGTGAT+TGG + chr5_2:25816602-25816621 Msa0765240:intron 20.0%
!! ATATATGATCAAGTGTATTA+CGG + chr5_2:25816674-25816693 Msa0765240:intron 20.0%
! TTAAGAGATTGTTGGATTAA+GGG - chr5_2:25812117-25812136 None:intergenic 25.0%
! AGAAAAAGTTAAGAGATTGT+TGG - chr5_2:25812125-25812144 None:intergenic 25.0%
!!! TACTAGATTTTTTCACATCT+AGG + chr5_2:25812227-25812246 Msa0765240:intron 25.0%
!!! ACTAGATTTTTTCACATCTA+GGG + chr5_2:25812228-25812247 Msa0765240:intron 25.0%
! AACATGTAACATTTCTACAT+AGG - chr5_2:25812471-25812490 None:intergenic 25.0%
!!! TATTTTTGTAAGTGTTTTCG+TGG + chr5_2:25812819-25812838 Msa0765240:intron 25.0%
! TAATAGTTTCCTTATAACAG+AGG - chr5_2:25812889-25812908 None:intergenic 25.0%
! ACATAAATGTAAAATTCCAG+GGG - chr5_2:25813290-25813309 None:intergenic 25.0%
! CAACATAAATGTAAAATTCC+AGG - chr5_2:25813292-25813311 None:intergenic 25.0%
!! ATTTTACATTTATGTTGTGC+GGG + chr5_2:25813295-25813314 Msa0765240:intron 25.0%
! AACTAAATTTGCATAGGAAA+AGG + chr5_2:25813594-25813613 Msa0765240:intron 25.0%
!!! TCTTAGTATTGGTACTTTAT+TGG + chr5_2:25813750-25813769 Msa0765240:intron 25.0%
! ATGGTTAATAACTTCATTGA+AGG + chr5_2:25813794-25813813 Msa0765240:intron 25.0%
! GAATTTCTTAGTGAAAATGT+TGG + chr5_2:25814060-25814079 Msa0765240:intron 25.0%
!! GTATATTCTTTTTGTATGAC+AGG - chr5_2:25814117-25814136 None:intergenic 25.0%
!! ATCAACTGATAACATTTTCA+TGG - chr5_2:25814435-25814454 None:intergenic 25.0%
! TTAATACTAGTAGTGTTTAC+CGG - chr5_2:25814501-25814520 None:intergenic 25.0%
!! TGTTAAGTGAAAAGTTGTTT+TGG + chr5_2:25814736-25814755 Msa0765240:intron 25.0%
! CAACTTAAAATCATAACATG+AGG - chr5_2:25814778-25814797 None:intergenic 25.0%
! ATGAATGGTATAACAAAGTT+TGG + chr5_2:25814844-25814863 Msa0765240:intron 25.0%
!! TCAAGTTTCTTCTTCAATTT+TGG - chr5_2:25815109-25815128 None:intergenic 25.0%
!! CTTTTCTCAATTTCTTTCTT+TGG - chr5_2:25815289-25815308 None:intergenic 25.0%
! TCTTGATCATTAAAATTAGC+AGG - chr5_2:25816279-25816298 None:intergenic 25.0%
!!! TTCTTTGAGATGTGTTTTTA+TGG + chr5_2:25816629-25816648 Msa0765240:intron 25.0%
! TATATGATCAAGTGTATTAC+GGG + chr5_2:25816675-25816694 Msa0765240:intron 25.0%
! CTAAAAAACTCATGTTTGTA+AGG + chr5_2:25816755-25816774 Msa0765240:intron 25.0%
! AATAGACAATCCAAATTACA+CGG - chr5_2:25816885-25816904 None:intergenic 25.0%
GTTAAGAGATTGTTGGATTA+AGG - chr5_2:25812118-25812137 None:intergenic 30.0%
!!! TTCTTCCTCTTCATTTTTTC+AGG + chr5_2:25812204-25812223 Msa0765240:five_prime_UTR 30.0%
TAGTACCTGAAAAAATGAAG+AGG - chr5_2:25812212-25812231 None:intergenic 30.0%
AAAGAATCCACAGTTGAAAT+TGG - chr5_2:25813039-25813058 None:intergenic 30.0%
GAAAACAGTGATTTCAGAAA+AGG + chr5_2:25813095-25813114 Msa0765240:CDS 30.0%
TTAATAAGTCATCACATGAG+AGG + chr5_2:25813124-25813143 Msa0765240:CDS 30.0%
TAATAAGTCATCACATGAGA+GGG + chr5_2:25813125-25813144 Msa0765240:CDS 30.0%
CATGCAATTTGTCTTAGTAT+TGG + chr5_2:25813739-25813758 Msa0765240:intron 30.0%
TTCTGCTTTATATTGTGTGA+AGG + chr5_2:25813899-25813918 Msa0765240:CDS 30.0%
TCTGCTTTATATTGTGTGAA+GGG + chr5_2:25813900-25813919 Msa0765240:CDS 30.0%
AATTGTTAAAGTGCAAGCAT+TGG + chr5_2:25813923-25813942 Msa0765240:CDS 30.0%
TTGTATGACAGGAAATCTAT+TGG - chr5_2:25814106-25814125 None:intergenic 30.0%
TAGTTAGTGAAGCAATACAA+GGG - chr5_2:25814200-25814219 None:intergenic 30.0%
!! TACTTCAATCTACTTTTCTC+AGG + chr5_2:25814218-25814237 Msa0765240:intron 30.0%
ACTCAATGTCCAAAATCTAT+CGG + chr5_2:25814243-25814262 Msa0765240:CDS 30.0%
ATTAATTAGAAGTTCCTACC+TGG - chr5_2:25814320-25814339 None:intergenic 30.0%
TTTACCGGGAGAAAAAAAAA+GGG - chr5_2:25814486-25814505 None:intergenic 30.0%
TAATACTAGTAGTGTTTACC+GGG - chr5_2:25814500-25814519 None:intergenic 30.0%
AATCATAACATGAGGTTGAA+TGG - chr5_2:25814770-25814789 None:intergenic 30.0%
!!! GATTTTTTTTTCTTTCCCTC+TGG + chr5_2:25814874-25814893 Msa0765240:intron 30.0%
!! TTCTTCTTCAATTTTGGAAG+AGG - chr5_2:25815103-25815122 None:intergenic 30.0%
ATTGAAGAAGAAACTTGACT+CGG + chr5_2:25815111-25815130 Msa0765240:CDS 30.0%
ACAAAAACAACGTCCAAAAA+AGG + chr5_2:25815222-25815241 Msa0765240:CDS 30.0%
!!! GAGTGATTTGAATCCTTTTT+TGG - chr5_2:25815238-25815257 None:intergenic 30.0%
AAAGGATTCAAATCACTCAT+TGG + chr5_2:25815240-25815259 Msa0765240:CDS 30.0%
! TTCTTTCATTTTCTCAGAAG+AGG - chr5_2:25815440-25815459 None:intergenic 30.0%
TGAGAAAATGAAAGAAACGA+CGG + chr5_2:25815444-25815463 Msa0765240:CDS 30.0%
TTCAAAGAAGAGAAAGATGT+TGG + chr5_2:25815871-25815890 Msa0765240:CDS 30.0%
TGATATCAGTAGCAAATCTT+GGG - chr5_2:25816392-25816411 None:intergenic 30.0%
ATGATATCAGTAGCAAATCT+TGG - chr5_2:25816393-25816412 None:intergenic 30.0%
TAGACAAAAACAGTTTAACC+AGG + chr5_2:25816412-25816431 Msa0765240:CDS 30.0%
! TTATCAGCTTTTCTACTCTT+GGG - chr5_2:25816485-25816504 None:intergenic 30.0%
ATAAATCTCTGTCATCTTCA+AGG + chr5_2:25816535-25816554 Msa0765240:CDS 30.0%
TAAATCTCTGTCATCTTCAA+GGG + chr5_2:25816536-25816555 Msa0765240:CDS 30.0%
!! TGAGATGTGTTTTTATGGTA+AGG + chr5_2:25816634-25816653 Msa0765240:intron 30.0%
ATATGATCAAGTGTATTACG+GGG + chr5_2:25816676-25816695 Msa0765240:intron 30.0%
AGTTTCTTCTCCACAAAAAT+TGG + chr5_2:25816812-25816831 Msa0765240:CDS 30.0%
! ATTTGCAGAACCAATTTTTG+TGG - chr5_2:25816825-25816844 None:intergenic 30.0%
!! ACAAAAATTGGTTCTGCAAA+TGG + chr5_2:25816824-25816843 Msa0765240:CDS 30.0%
!! CAAAAATTGGTTCTGCAAAT+GGG + chr5_2:25816825-25816844 Msa0765240:CDS 30.0%
! TCTTTTCATTCCTTCACCAT+TGG + chr5_2:25812177-25812196 Msa0765240:five_prime_UTR 35.0%
! GAAACTATGTAGTTGACTCT+TGG + chr5_2:25812324-25812343 Msa0765240:intron 35.0%
TAATTGCTGCCTCTGTTATA+AGG + chr5_2:25812877-25812896 Msa0765240:intron 35.0%
GTAGAAATCATCGAGTAACA+AGG + chr5_2:25812978-25812997 Msa0765240:intron 35.0%
GTCTAATCCAATTTCAACTG+TGG + chr5_2:25813029-25813048 Msa0765240:CDS 35.0%
TTGTCAAATAGCAGCTATAG+CGG - chr5_2:25813384-25813403 None:intergenic 35.0%
TGAAATAGATGTGGTTGCAT+TGG - chr5_2:25813564-25813583 None:intergenic 35.0%
!! GTACTCACTGATTCTCTATT+TGG + chr5_2:25813706-25813725 Msa0765240:intron 35.0%
CTAAGACAAATTGCATGTGA+TGG - chr5_2:25813736-25813755 None:intergenic 35.0%
AATGTTAGACGTTCTGATAC+TGG + chr5_2:25813957-25813976 Msa0765240:CDS 35.0%
ATGTTAGACGTTCTGATACT+GGG + chr5_2:25813958-25813977 Msa0765240:CDS 35.0%
TTCGCAAGGTAAAAGTTCTT+TGG + chr5_2:25813997-25814016 Msa0765240:intron 35.0%
GTAGTTAGTGAAGCAATACA+AGG - chr5_2:25814201-25814220 None:intergenic 35.0%
! GTAACAATGCCGATAGATTT+TGG - chr5_2:25814255-25814274 None:intergenic 35.0%
TTACCGGGAGAAAAAAAAAG+GGG - chr5_2:25814485-25814504 None:intergenic 35.0%
GTTTACCGGGAGAAAAAAAA+AGG - chr5_2:25814487-25814506 None:intergenic 35.0%
AACTAAACCAAACAACCAGA+GGG - chr5_2:25814892-25814911 None:intergenic 35.0%
AAACTAAACCAAACAACCAG+AGG - chr5_2:25814893-25814912 None:intergenic 35.0%
CAGCTGAAATGGATATCATA+TGG - chr5_2:25814972-25814991 None:intergenic 35.0%
AGATCACTATTTAGCGATAG+AGG - chr5_2:25815019-25815038 None:intergenic 35.0%
CTATCGCTAAATAGTGATCT+TGG + chr5_2:25815019-25815038 Msa0765240:CDS 35.0%
AAAATCTTGACCTTGTCCAA+CGG - chr5_2:25815075-25815094 None:intergenic 35.0%
! TTGGACAAGGTCAAGATTTT+GGG + chr5_2:25815075-25815094 Msa0765240:CDS 35.0%
! CTGAAAAGGCACAAGTTAAA+AGG + chr5_2:25815140-25815159 Msa0765240:CDS 35.0%
AGAAAAGAAAACACAGCTCT+AGG + chr5_2:25815365-25815384 Msa0765240:CDS 35.0%
GAAAAGAAAACACAGCTCTA+GGG + chr5_2:25815366-25815385 Msa0765240:CDS 35.0%
AAGCCAAAGAAGAGCTTAAA+TGG + chr5_2:25815613-25815632 Msa0765240:CDS 35.0%
! TTGTTCTCTTCTGGTGTTTT+CGG - chr5_2:25815667-25815686 None:intergenic 35.0%
AAGCCAAAGAAGAGCTTAAA+TGG + chr5_2:25815613-25815632 Msa0765240:CDS 35.0%
AAAGCGCAAGAAGAGAATAA+TGG + chr5_2:25815820-25815839 Msa0765240:CDS 35.0%
AAGCCAAAGAAGAGCTTAAA+TGG + chr5_2:25815613-25815632 Msa0765240:CDS 35.0%
AAGCCAAAGAAGAGCTTAAA+TGG + chr5_2:25815613-25815632 Msa0765240:CDS 35.0%
GTCAAAGAAGAGAAAGATCT+TGG + chr5_2:25815946-25815965 Msa0765240:CDS 35.0%
AAAGCGCAAGAAGAGAATAA+TGG + chr5_2:25815820-25815839 Msa0765240:CDS 35.0%
AAGGTAGGAGATGAAGAAAT+AGG + chr5_2:25816186-25816205 Msa0765240:CDS 35.0%
GATATCAGTAGCAAATCTTG+GGG - chr5_2:25816391-25816410 None:intergenic 35.0%
ACAAAAACAGTTTAACCAGG+AGG + chr5_2:25816415-25816434 Msa0765240:CDS 35.0%
! TATCAGCTTTTCTACTCTTG+GGG - chr5_2:25816484-25816503 None:intergenic 35.0%
! GTTATCAGCTTTTCTACTCT+TGG - chr5_2:25816486-25816505 None:intergenic 35.0%
GAAAAGCTGATAACTTTGAG+CGG + chr5_2:25816492-25816511 Msa0765240:CDS 35.0%
AATTACACGGTCTATTGACA+TGG - chr5_2:25816872-25816891 None:intergenic 35.0%
TGTCAATAGACCGTGTAATT+TGG + chr5_2:25816872-25816891 Msa0765240:CDS 35.0%
GAAGAAGAATCCAATGGTGA+AGG - chr5_2:25812190-25812209 None:intergenic 40.0%
GAAGAGGAAGAAGAATCCAA+TGG - chr5_2:25812196-25812215 None:intergenic 40.0%
CAAATATCCGCACCAATATC+TGG + chr5_2:25813060-25813079 Msa0765240:CDS 40.0%
ATTAGCTCCAGATATTGGTG+CGG - chr5_2:25813070-25813089 None:intergenic 40.0%
GCAACATTAGCTCCAGATAT+TGG - chr5_2:25813075-25813094 None:intergenic 40.0%
CTCTCAAATGGAGAGGAAAA+GGG + chr5_2:25813153-25813172 Msa0765240:CDS 40.0%
TTGAGATGCAGCATTAGCAA+CGG - chr5_2:25813190-25813209 None:intergenic 40.0%
AAGATGATCTTGAGACACTC+AGG + chr5_2:25813208-25813227 Msa0765240:CDS 40.0%
TTCCACTTAACAGCGTATCA+CGG + chr5_2:25813408-25813427 Msa0765240:intron 40.0%
TAAACAGCGCAATAGCATAG+AGG - chr5_2:25813457-25813476 None:intergenic 40.0%
! CTTTTACCTTGCGAACTTTC+AGG - chr5_2:25813992-25814011 None:intergenic 40.0%
GACTCATAGAACATACTCTG+CGG + chr5_2:25814141-25814160 Msa0765240:intron 40.0%
AGTGAAGCAATACAAGGGTA+TGG - chr5_2:25814195-25814214 None:intergenic 40.0%
! TTTTCTGACAGCTTGTCTTC+CGG - chr5_2:25814285-25814304 None:intergenic 40.0%
AGAAAATGCCTTTGTTCACC+AGG + chr5_2:25814299-25814318 Msa0765240:CDS 40.0%
TTTCTTTCCCTCTGGTTGTT+TGG + chr5_2:25814882-25814901 Msa0765240:intron 40.0%
ATGATATCCATTTCAGCTGC+TGG + chr5_2:25814973-25814992 Msa0765240:intron 40.0%
TGATCTTGGAGAACCTTACT+TGG + chr5_2:25815033-25815052 Msa0765240:CDS 40.0%
! GTTGGACAAGGTCAAGATTT+TGG + chr5_2:25815074-25815093 Msa0765240:CDS 40.0%
CACAAGTTAAAAGGACTACC+CGG + chr5_2:25815149-25815168 Msa0765240:CDS 40.0%
TGTTACTGATGTTTCAGAGC+AGG + chr5_2:25815405-25815424 Msa0765240:CDS 40.0%
GTTACTGATGTTTCAGAGCA+GGG + chr5_2:25815406-25815425 Msa0765240:CDS 40.0%
TTACTGATGTTTCAGAGCAG+GGG + chr5_2:25815407-25815426 Msa0765240:CDS 40.0%
! ATTTTCTCAGAAGAGGAACC+TGG - chr5_2:25815433-25815452 None:intergenic 40.0%
AAGCCAAAGAAGAGCTCAAA+TGG + chr5_2:25815535-25815554 Msa0765240:CDS 40.0%
GTCAAAGAAGAGAAAGGTCT+TGG + chr5_2:25815562-25815581 Msa0765240:CDS 40.0%
! CTGCCATTTAAGCTCTTCTT+TGG - chr5_2:25815619-25815638 None:intergenic 40.0%
ACCAAAGAAGAGAACAGTCT+TGG + chr5_2:25815640-25815659 Msa0765240:CDS 40.0%
TCCAAGACTGTTCTCTTCTT+TGG - chr5_2:25815644-25815663 None:intergenic 40.0%
CCAAAGAAGAGCTTAAATGG+CGG + chr5_2:25815616-25815635 Msa0765240:CDS 40.0%
GTCAAGGAAGAGAAAGATCT+TGG + chr5_2:25815718-25815737 Msa0765240:CDS 40.0%
TCCAAGACCTTTCTCTTCTT+TGG - chr5_2:25815566-25815585 None:intergenic 40.0%
CCACCATTTAAGCTCTTCTT+TGG - chr5_2:25815850-25815869 None:intergenic 40.0%
CCAAAGAAGAGCTTAAATGG+TGG + chr5_2:25815616-25815635 Msa0765240:CDS 40.0%
CCAAAGAAGAGCTTAAATGG+CGG + chr5_2:25815616-25815635 Msa0765240:CDS 40.0%
AAGCCAAAGAAGAGCTTAAG+TGG + chr5_2:25815994-25816013 Msa0765240:CDS 40.0%
AAGCCAAAGAAGAGCTTGAA+TGG + chr5_2:25816072-25816091 Msa0765240:CDS 40.0%
! TCTGAGACCTTTCTCTTCTT+TGG - chr5_2:25816103-25816122 None:intergenic 40.0%
CTTACAGACTAGTGTGAAGA+AGG + chr5_2:25816167-25816186 Msa0765240:CDS 40.0%
!!! CTAGCTTTTGCTGATTCAGT+CGG - chr5_2:25816351-25816370 None:intergenic 40.0%
AATCAGCAAAAGCTAGGCTA+AGG + chr5_2:25816355-25816374 Msa0765240:CDS 40.0%
ATCAGCAAAAGCTAGGCTAA+GGG + chr5_2:25816356-25816375 Msa0765240:CDS 40.0%
TCTTCACTTAACAGCAAGTC+AGG + chr5_2:25816450-25816469 Msa0765240:CDS 40.0%
!! ATGGCTCTAAATTGCTGCTT+TGG - chr5_2:25816853-25816872 None:intergenic 40.0%
! ATTGTTGACGTGATGGGGAA+AGG + chr5_2:25812712-25812731 Msa0765240:exon 45.0%
AAGGAAGAAGTCCTGGGAAA+TGG + chr5_2:25812731-25812750 Msa0765240:CDS 45.0%
ATCGAGTAACAAGGATGCAC+TGG + chr5_2:25812987-25813006 Msa0765240:CDS 45.0%
TCGAGTAACAAGGATGCACT+GGG + chr5_2:25812988-25813007 Msa0765240:CDS 45.0%
GAGAGGGATATCCTCTCAAA+TGG + chr5_2:25813141-25813160 Msa0765240:CDS 45.0%
GGATATCCTCTCAAATGGAG+AGG + chr5_2:25813146-25813165 Msa0765240:CDS 45.0%
! CCTTTTCCTCTCCATTTGAG+AGG - chr5_2:25813155-25813174 None:intergenic 45.0%
CCTCTCAAATGGAGAGGAAA+AGG + chr5_2:25813152-25813171 Msa0765240:CDS 45.0%
AAATGGAGAGGAAAAGGGTC+AGG + chr5_2:25813158-25813177 Msa0765240:CDS 45.0%
TCTTGAGACACTCAGGCTTA+CGG + chr5_2:25813215-25813234 Msa0765240:CDS 45.0%
AAACTTCAGTCTGCTTGCAG+AGG + chr5_2:25813249-25813268 Msa0765240:CDS 45.0%
TTCCGTGATACGCTGTTAAG+TGG - chr5_2:25813413-25813432 None:intergenic 45.0%
AACTTCATTGAAGGCTCGTC+AGG + chr5_2:25813803-25813822 Msa0765240:intron 45.0%
AGCTCTTATTCGTGGTCACT+TGG + chr5_2:25813860-25813879 Msa0765240:CDS 45.0%
CGGCATTGTTACATCTACAC+CGG + chr5_2:25814263-25814282 Msa0765240:CDS 45.0%
AATGCCTTTGTTCACCAGGT+AGG + chr5_2:25814303-25814322 Msa0765240:intron 45.0%
AGTTCCTACCTGGTGAACAA+AGG - chr5_2:25814310-25814329 None:intergenic 45.0%
!!! CCTCCCCTTTTTTTTTCTCC+CGG + chr5_2:25814479-25814498 Msa0765240:intron 45.0%
!! TCACTCTCGACTCGACTTTT+AGG + chr5_2:25814548-25814567 Msa0765240:intron 45.0%
!! CACTCTCGACTCGACTTTTA+GGG + chr5_2:25814549-25814568 Msa0765240:intron 45.0%
AGAAACTTCGGACTCAGTTG+AGG - chr5_2:25814686-25814705 None:intergenic 45.0%
TAGCGATAGAGGAAACGCAT+GGG - chr5_2:25815008-25815027 None:intergenic 45.0%
TTAGCGATAGAGGAAACGCA+TGG - chr5_2:25815009-25815028 None:intergenic 45.0%
AACCTTACTTGGCTTCGAAG+TGG + chr5_2:25815044-25815063 Msa0765240:CDS 45.0%
!! GAAGAAACTTGACTCGGTGT+CGG + chr5_2:25815117-25815136 Msa0765240:CDS 45.0%
TCTGTCCAAGACCTTTCTCA+GGG - chr5_2:25815492-25815511 None:intergenic 45.0%
TTCTGTCCAAGACCTTTCTC+AGG - chr5_2:25815493-25815512 None:intergenic 45.0%
CCACCATTTGAGCTCTTCTT+TGG - chr5_2:25815541-25815560 None:intergenic 45.0%
CCAAAGAAGAGCTCAAATGG+TGG + chr5_2:25815538-25815557 Msa0765240:CDS 45.0%
! GGTGGTGTCAAAGAAGAGAA+AGG + chr5_2:25815556-25815575 Msa0765240:CDS 45.0%
GGCTTATCGTTGTTCTCTTC+TGG - chr5_2:25815676-25815695 None:intergenic 45.0%
CCGCCATTTAAGCTCTTCTT+TGG - chr5_2:25815697-25815716 None:intergenic 45.0%
! AAGCCAAAGAAGAGCGTAAG+TGG + chr5_2:25815766-25815785 Msa0765240:CDS 45.0%
GCCAAAGAAGAGAAAGGTCT+TGG + chr5_2:25815793-25815812 Msa0765240:CDS 45.0%
CCGCCATTTAAGCTCTTCTT+TGG - chr5_2:25815697-25815716 None:intergenic 45.0%
CCAAAGAAGAGCTTAAGTGG+CGG + chr5_2:25815997-25816016 Msa0765240:CDS 45.0%
TCCAAGACCTTTCTCTGCTT+TGG - chr5_2:25816025-25816044 None:intergenic 45.0%
CTGCCATTCAAGCTCTTCTT+TGG - chr5_2:25816078-25816097 None:intergenic 45.0%
!! CAGACAGAAAGCACTAGAAC+AGG + chr5_2:25816119-25816138 Msa0765240:CDS 45.0%
!! CAGAAAGCACTAGAACAGGA+AGG + chr5_2:25816123-25816142 Msa0765240:CDS 45.0%
CTAGTCTGTAAGACAGCAGT+AGG - chr5_2:25816159-25816178 None:intergenic 45.0%
CAGACTAGTGTGAAGAAGGT+AGG + chr5_2:25816171-25816190 Msa0765240:CDS 45.0%
!! TCCAAGAGTGCCGAGTTATA+TGG + chr5_2:25816323-25816342 Msa0765240:CDS 45.0%
TCAGTCGGAGCCATATAACT+CGG - chr5_2:25816336-25816355 None:intergenic 45.0%
CGACTGAATCAGCAAAAGCT+AGG + chr5_2:25816349-25816368 Msa0765240:CDS 45.0%
TCAGCAAAAGCTAGGCTAAG+GGG + chr5_2:25816357-25816376 Msa0765240:CDS 45.0%
AGATGAAAGTGAATGCCTCC+TGG - chr5_2:25816433-25816452 None:intergenic 45.0%
CTGATAACTTTGAGCGGAAG+AGG + chr5_2:25816498-25816517 Msa0765240:CDS 45.0%
TCTCTGTCATCTTCAAGGGA+CGG + chr5_2:25816540-25816559 Msa0765240:CDS 45.0%
TGATCAAGTGTATTACGGGG+AGG + chr5_2:25816679-25816698 Msa0765240:intron 45.0%
TTGTCTATTCCCGAACAGTC+TGG + chr5_2:25816896-25816915 Msa0765240:CDS 45.0%
AGCAGCGATTGTTGACGTGA+TGG + chr5_2:25812705-25812724 Msa0765240:exon 50.0%
GCAGCGATTGTTGACGTGAT+GGG + chr5_2:25812706-25812725 Msa0765240:exon 50.0%
CAGCGATTGTTGACGTGATG+GGG + chr5_2:25812707-25812726 Msa0765240:exon 50.0%
ATGGGGAAAGGAAGAAGTCC+TGG + chr5_2:25812724-25812743 Msa0765240:CDS 50.0%
TGGGGAAAGGAAGAAGTCCT+GGG + chr5_2:25812725-25812744 Msa0765240:CDS 50.0%
GAAGTCCTGGGAAATGGATC+AGG + chr5_2:25812737-25812756 Msa0765240:CDS 50.0%
AAGCTCCTGATCCATTTCCC+AGG - chr5_2:25812745-25812764 None:intergenic 50.0%
TGGATCAGGAGCTTACTCTC+AGG + chr5_2:25812751-25812770 Msa0765240:CDS 50.0%
GGATCAGGAGCTTACTCTCA+GGG + chr5_2:25812752-25812771 Msa0765240:CDS 50.0%
GATCAGGAGCTTACTCTCAG+GGG + chr5_2:25812753-25812772 Msa0765240:CDS 50.0%
ATCAGGAGCTTACTCTCAGG+GGG + chr5_2:25812754-25812773 Msa0765240:CDS 50.0%
GCTATCAGGTAATACTCCCC+TGG + chr5_2:25813271-25813290 Msa0765240:intron 50.0%
CAGCTGCAAGCTCTTATTCG+TGG + chr5_2:25813852-25813871 Msa0765240:CDS 50.0%
!! AAAGTGCAAGCATTGGCTCG+TGG + chr5_2:25813930-25813949 Msa0765240:CDS 50.0%
ACGTTCTGATACTGGGCTTG+AGG + chr5_2:25813965-25813984 Msa0765240:CDS 50.0%
TGAGGTCCTGAAAGTTCGCA+AGG + chr5_2:25813983-25814002 Msa0765240:CDS 50.0%
TAGAACATACTCTGCGGCGT+AGG + chr5_2:25814147-25814166 Msa0765240:intron 50.0%
CCGGGAGAAAAAAAAAGGGG+AGG - chr5_2:25814482-25814501 None:intergenic 50.0%
GATGAAGCCAGCAGCTGAAA+TGG - chr5_2:25814983-25815002 None:intergenic 50.0%
AGCCACTTCGAAGCCAAGTA+AGG - chr5_2:25815049-25815068 None:intergenic 50.0%
TTTCACGGCAGGTGATTTCC+GGG - chr5_2:25815170-25815189 None:intergenic 50.0%
CTTTCACGGCAGGTGATTTC+CGG - chr5_2:25815171-25815190 None:intergenic 50.0%
TGAGCCCTCATCAGCTTTCA+CGG - chr5_2:25815185-25815204 None:intergenic 50.0%
!! TCACTCATTGGTGTCAGCTC+AGG + chr5_2:25815252-25815271 Msa0765240:CDS 50.0%
GGGCAAGACTCTTCTGACTT+TGG - chr5_2:25815472-25815491 None:intergenic 50.0%
GAAGAGTCTTGCCCTGAGAA+AGG + chr5_2:25815478-25815497 Msa0765240:CDS 50.0%
TCTTGCCCTGAGAAAGGTCT+TGG + chr5_2:25815484-25815503 Msa0765240:CDS 50.0%
! GAGCTTAAATGGCGGTGTCA+AGG + chr5_2:25815702-25815721 Msa0765240:CDS 50.0%
! CCAAAGAAGAGCGTAAGTGG+CGG + chr5_2:25815769-25815788 Msa0765240:CDS 50.0%
CCGCCACTTAAGCTCTTCTT+TGG - chr5_2:25816000-25816019 None:intergenic 50.0%
GCCAAAGCAGAGAAAGGTCT+TGG + chr5_2:25816021-25816040 Msa0765240:CDS 50.0%
GGCAGTGCCAAAGAAGAGAA+AGG + chr5_2:25816093-25816112 Msa0765240:CDS 50.0%
GGAGTTAGCGAAGACTTGCA+TGG + chr5_2:25816207-25816226 Msa0765240:CDS 50.0%
GTTAGCGAAGACTTGCATGG+CGG + chr5_2:25816210-25816229 Msa0765240:CDS 50.0%
CAGGCAGTGAAGCTCTTCTT+TGG - chr5_2:25816260-25816279 None:intergenic 50.0%
TAACTCGGCACTCTTGGACT+TGG - chr5_2:25816321-25816340 None:intergenic 50.0%
GCCATATAACTCGGCACTCT+TGG - chr5_2:25816327-25816346 None:intergenic 50.0%
AAAGCTAGGCTAAGGGGACA+AGG + chr5_2:25816363-25816382 Msa0765240:CDS 50.0%
CTCTGTCATCTTCAAGGGAC+GGG + chr5_2:25816541-25816560 Msa0765240:CDS 50.0%
AATGTCAGGCCAGACTGTTC+GGG - chr5_2:25816908-25816927 None:intergenic 50.0%
CAATGTCAGGCCAGACTGTT+CGG - chr5_2:25816909-25816928 None:intergenic 50.0%
!! GCTGCTTTAGAGCCAATGTC+AGG - chr5_2:25816922-25816941 None:intergenic 50.0%
TCAGGAGCTTACTCTCAGGG+GGG + chr5_2:25812755-25812774 Msa0765240:CDS 55.0%
GATGCAGCATTAGCAACGGC+TGG - chr5_2:25813186-25813205 None:intergenic 55.0%
GTCTGCTTGCAGAGGCTATC+AGG + chr5_2:25813257-25813276 Msa0765240:CDS 55.0%
CTTCGAAGTGGCTTGACCGT+TGG + chr5_2:25815056-25815075 Msa0765240:CDS 55.0%
AGTGGCTTGACCGTTGGACA+AGG + chr5_2:25815062-25815081 Msa0765240:CDS 55.0%
!! TGACTCGGTGTCGGCTGAAA+AGG + chr5_2:25815126-25815145 Msa0765240:CDS 55.0%
ACCTGCCGTGAAAGCTGATG+AGG + chr5_2:25815177-25815196 Msa0765240:CDS 55.0%
CCTGCCGTGAAAGCTGATGA+GGG + chr5_2:25815178-25815197 Msa0765240:CDS 55.0%
GCTGATGAGGGCTCAAGTTC+TGG + chr5_2:25815190-25815209 Msa0765240:CDS 55.0%
CCGCCACTTACGCTCTTCTT+TGG - chr5_2:25815772-25815791 None:intergenic 55.0%
! GGCGGTGCCAAAGAAGAGAA+AGG + chr5_2:25815787-25815806 Msa0765240:CDS 55.0%
TGAGCGGAAGAGGAGTTGCA+AGG + chr5_2:25816508-25816527 Msa0765240:CDS 55.0%
TCATCTTCAAGGGACGGGAC+TGG + chr5_2:25816546-25816565 Msa0765240:CDS 55.0%
CGAACAGTCTGGCCTGACAT+TGG + chr5_2:25816907-25816926 Msa0765240:CDS 55.0%
CCCTCATCAGCTTTCACGGC+AGG - chr5_2:25815181-25815200 None:intergenic 60.0%
GATGTTTCAGAGCAGGGGCC+AGG + chr5_2:25815412-25815431 Msa0765240:CDS 60.0%
! GGCGGTGCCAAAGCAGAGAA+AGG + chr5_2:25816015-25816034 Msa0765240:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 25812094 25816948 25812094 ID=Msa0765240;Name=Msa0765240
chr5_2 mRNA 25812094 25816948 25812094 ID=Msa0765240-mRNA-1;Parent=Msa0765240;Name=Msa0765240-mRNA-1;_AED=0.15;_eAED=0.15;_QI=181|0.83|0.71|0.85|0.83|0.71|7|0|795
chr5_2 exon 25812094 25812225 25812094 ID=Msa0765240-mRNA-1:exon:10375;Parent=Msa0765240-mRNA-1
chr5_2 exon 25812675 25812825 25812675 ID=Msa0765240-mRNA-1:exon:10376;Parent=Msa0765240-mRNA-1
chr5_2 exon 25812982 25813278 25812982 ID=Msa0765240-mRNA-1:exon:10377;Parent=Msa0765240-mRNA-1
chr5_2 exon 25813816 25814004 25813816 ID=Msa0765240-mRNA-1:exon:10378;Parent=Msa0765240-mRNA-1
chr5_2 exon 25814240 25814320 25814240 ID=Msa0765240-mRNA-1:exon:10379;Parent=Msa0765240-mRNA-1
chr5_2 exon 25814989 25816567 25814989 ID=Msa0765240-mRNA-1:exon:10380;Parent=Msa0765240-mRNA-1
chr5_2 exon 25816809 25816948 25816809 ID=Msa0765240-mRNA-1:exon:10381;Parent=Msa0765240-mRNA-1
chr5_2 five_prime_UTR 25812094 25812225 25812094 ID=Msa0765240-mRNA-1:five_prime_utr;Parent=Msa0765240-mRNA-1
chr5_2 five_prime_UTR 25812675 25812723 25812675 ID=Msa0765240-mRNA-1:five_prime_utr;Parent=Msa0765240-mRNA-1
chr5_2 CDS 25812724 25812825 25812724 ID=Msa0765240-mRNA-1:cds;Parent=Msa0765240-mRNA-1
chr5_2 CDS 25812982 25813278 25812982 ID=Msa0765240-mRNA-1:cds;Parent=Msa0765240-mRNA-1
chr5_2 CDS 25813816 25814004 25813816 ID=Msa0765240-mRNA-1:cds;Parent=Msa0765240-mRNA-1
chr5_2 CDS 25814240 25814320 25814240 ID=Msa0765240-mRNA-1:cds;Parent=Msa0765240-mRNA-1
chr5_2 CDS 25814989 25816567 25814989 ID=Msa0765240-mRNA-1:cds;Parent=Msa0765240-mRNA-1
chr5_2 CDS 25816809 25816948 25816809 ID=Msa0765240-mRNA-1:cds;Parent=Msa0765240-mRNA-1
Gene Sequence

>Msa0765240

ATGGGGAAAGGAAGAAGTCCTGGGAAATGGATCAGGAGCTTACTCTCAGGGGGGAAGAAATCATCATCGAAGTCAAGTTCGTCGAAGAAGAATGATATTTTTAAATCATCGAGTAACAAGGATGCACTGGGATCTTCTGAGTTAACTGTGTCTAATCCAATTTCAACTGTGGATTCTTTGCAAATATCCGCACCAATATCTGGAGCTAATGTTGCGAAAACAGTGATTTCAGAAAAGGAAGTAGTTAATAAGTCATCACATGAGAGGGATATCCTCTCAAATGGAGAGGAAAAGGGTCAGGCACCAGCCGTTGCTAATGCTGCATCTCAAGATGATCTTGAGACACTCAGGCTTACGGAAGCAGCTATTAAACTTCAGTCTGCTTGCAGAGGCTATCAGGCTCGTCAGGAATTTCAAACTCTCAAAGCTATTACACAGCTGCAAGCTCTTATTCGTGGTCACTTGGTTAGAAGACAAGCTGTTTCTGCTTTATATTGTGTGAAGGGAATTGTTAAAGTGCAAGCATTGGCTCGTGGTTACAATGTTAGACGTTCTGATACTGGGCTTGAGGTCCTGAAAGTTCGCAAGGATACTCAATGTCCAAAATCTATCGGCATTGTTACATCTACACCGGAAGACAAGCTGTCAGAAAATGCCTTTGTTCACCAGCTGCTGGCTTCATCGACCCATGCGTTTCCTCTATCGCTAAATAGTGATCTTGGAGAACCTTACTTGGCTTCGAAGTGGCTTGACCGTTGGACAAGGTCAAGATTTTGGGCACCTCTTCCAAAATTGAAGAAGAAACTTGACTCGGTGTCGGCTGAAAAGGCACAAGTTAAAAGGACTACCCGGAAATCACCTGCCGTGAAAGCTGATGAGGGCTCAAGTTCTGGTTCTAACAAACAAAAACAACGTCCAAAAAAGGATTCAAATCACTCATTGGTGTCAGCTCAGGCACAAGAACACCCAAAGAAAGAAATTGAGAAAAGTAGTCTAAAGAAAACTCGTCTGCAGAATGTTTCAGACAGATCTGAGATTGTTAATGAGAAAAGAAAACACAGCTCTAGGGCAACTTCAGATCAAACTGTTACTGATGTTTCAGAGCAGGGGCCAGGTTCCTCTTCTGAGAAAATGAAAGAAACGACGGTACCAAAGTCAGAAGAGTCTTGCCCTGAGAAAGGTCTTGGACAGAAAGTACTAGAAGAGAATAATGATAAGCCAAAGAAGAGCTCAAATGGTGGTGTCAAAGAAGAGAAAGGTCTTGGAAAGAAAACACTAGAAGAGATAAACGATAAGCCAAAGAAGAGCTTAAATGGCAGTACCAAAGAAGAGAACAGTCTTGGACCGAAAACACCAGAAGAGAACAACGATAAGCCAAAGAAGAGCTTAAATGGCGGTGTCAAGGAAGAGAAAGATCTTGGACAGAAAACACAAGAAAATAATGATAAGCCAAAGAAGAGCGTAAGTGGCGGTGCCAAAGAAGAGAAAGGTCTTGGACAGAAAGCGCAAGAAGAGAATAATGGTAAGCCAAAGAAGAGCTTAAATGGTGGTTTCAAAGAAGAGAAAGATGTTGGACAGAAAGCACAAGAGAATAATGATAAGCCAAAGAAGAGCTTAAATGGCGGTGTCAAAGAAGAGAAAGATCTTGGACAAAAAACACAAGAGAATAATGATAAGCCAAAGAAGAGCTTAAGTGGCGGTGCCAAAGCAGAGAAAGGTCTTGGACAGAAAGCGCAAGAAGAGAATAATGGTAAGCCAAAGAAGAGCTTGAATGGCAGTGCCAAAGAAGAGAAAGGTCTCAGACAGAAAGCACTAGAACAGGAAGGTCATAATGATCCTACTGCTGTCTTACAGACTAGTGTGAAGAAGGTAGGAGATGAAGAAATAGGAGTTAGCGAAGACTTGCATGGCGGTGACAAAGTTATCAGCAACAATTACCAAAGAAGAGCTTCACTGCCTGCTAATTTTAATGATCAAGAAAATGAGATACACAACACTCCAAGTCCAAGAGTGCCGAGTTATATGGCTCCGACTGAATCAGCAAAAGCTAGGCTAAGGGGACAAGGCTCCCCAAGATTTGCTACTGATATCATAGACAAAAACAGTTTAACCAGGAGGCATTCACTTTCATCTTCACTTAACAGCAAGTCAGGTTCATTTTCCCCAAGAGTAGAAAAGCTGATAACTTTGAGCGGAAGAGGAGTTGCAAGGACTGATAAATCTCTGTCATCTTCAAGGGACGGGACTGAAAAGTTTCTTCTCCACAAAAATTGGTTCTGCAAATGGGCTCCAAAGCAGCAATTTAGAGCCATGTCAATAGACCGTGTAATTTGGATTGTCTATTCCCGAACAGTCTGGCCTGACATTGGCTCTAAAGCAGCAATTTAG

Protein sequence

>Msa0765240

MGKGRSPGKWIRSLLSGGKKSSSKSSSSKKNDIFKSSSNKDALGSSELTVSNPISTVDSLQISAPISGANVAKTVISEKEVVNKSSHERDILSNGEEKGQAPAVANAASQDDLETLRLTEAAIKLQSACRGYQARQEFQTLKAITQLQALIRGHLVRRQAVSALYCVKGIVKVQALARGYNVRRSDTGLEVLKVRKDTQCPKSIGIVTSTPEDKLSENAFVHQLLASSTHAFPLSLNSDLGEPYLASKWLDRWTRSRFWAPLPKLKKKLDSVSAEKAQVKRTTRKSPAVKADEGSSSGSNKQKQRPKKDSNHSLVSAQAQEHPKKEIEKSSLKKTRLQNVSDRSEIVNEKRKHSSRATSDQTVTDVSEQGPGSSSEKMKETTVPKSEESCPEKGLGQKVLEENNDKPKKSSNGGVKEEKGLGKKTLEEINDKPKKSLNGSTKEENSLGPKTPEENNDKPKKSLNGGVKEEKDLGQKTQENNDKPKKSVSGGAKEEKGLGQKAQEENNGKPKKSLNGGFKEEKDVGQKAQENNDKPKKSLNGGVKEEKDLGQKTQENNDKPKKSLSGGAKAEKGLGQKAQEENNGKPKKSLNGSAKEEKGLRQKALEQEGHNDPTAVLQTSVKKVGDEEIGVSEDLHGGDKVISNNYQRRASLPANFNDQENEIHNTPSPRVPSYMAPTESAKARLRGQGSPRFATDIIDKNSLTRRHSLSSSLNSKSGSFSPRVEKLITLSGRGVARTDKSLSSSRDGTEKFLLHKNWFCKWAPKQQFRAMSIDRVIWIVYSRTVWPDIGSKAAI*