AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0248970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0248970 MtrunA17_Chr2g0304251 96.899 516 16 0 44 559 22 537 0.0 1036
Msa0248970 MtrunA17_Chr4g0064851 67.126 508 153 3 53 558 33 528 0.0 699
Msa0248970 MtrunA17_Chr3g0086241 46.139 531 268 5 47 559 13 543 9.01e-173 500
Msa0248970 MtrunA17_Chr4g0061271 47.238 525 255 6 54 558 20 542 1.20e-172 499
Msa0248970 MtrunA17_Chr3g0086271 48.141 511 245 4 54 559 20 515 2.22e-172 498
Msa0248970 MtrunA17_Chr3g0086291 47.758 513 246 6 54 559 20 517 1.02e-170 494
Msa0248970 MtrunA17_Chr5g0418671 48.800 500 230 4 63 558 26 503 7.21e-168 486
Msa0248970 MtrunA17_Chr3g0086251 47.554 511 247 5 54 559 130 624 6.41e-167 488
Msa0248970 MtrunA17_Chr4g0064821 62.555 227 72 2 188 414 3 216 4.27e-95 289
Msa0248970 MtrunA17_Chr4g0064811 48.673 113 45 2 447 559 1 100 1.83e-26 103
Msa0248970 MtrunA17_Chr8g0383141 47.222 108 32 2 428 530 13 100 4.84e-22 91.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0248970 AT5G34940.2 62.402 508 186 3 57 559 29 536 0.0 684
Msa0248970 AT5G34940.1 62.344 401 146 3 164 559 1 401 0.0 526
Msa0248970 AT5G61250.3 47.399 519 261 3 52 558 20 538 0.0 521
Msa0248970 AT5G61250.1 47.399 519 261 3 52 558 20 538 0.0 521
Msa0248970 AT5G61250.2 47.399 519 261 3 52 558 20 538 0.0 521
Msa0248970 AT5G07830.1 47.036 523 264 5 49 558 20 542 1.12e-175 508
Msa0248970 AT5G34940.3 63.456 353 128 1 57 408 29 381 6.08e-175 499
Msa0248970 AT5G34940.4 62.252 302 102 2 266 559 2 299 3.05e-136 398

Find 143 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGATTGAATGCTCTTTA+TGG 0.131939 2_2:-33893843 Msa0248970:CDS
TTCATAATGCATTCAATTAA+TGG 0.134123 2_2:+33891198 None:intergenic
CCGTCTAAGCCCGCTTAAAA+TGG 0.182176 2_2:-33896367 Msa0248970:CDS
TCTTGCTTCTCTTCTCAATT+TGG 0.188079 2_2:-33895086 Msa0248970:intron
ATGCATTTGTGTATAGTTTC+TGG 0.217121 2_2:-33892942 Msa0248970:intron
TTGTATCATTAACAGGTATT+TGG 0.223146 2_2:-33892695 Msa0248970:intron
GATGGAGTGTGGTGAGATTT+TGG 0.235299 2_2:+33896309 None:intergenic
GAGAAAGGAGCAATCCTTAT+TGG 0.269954 2_2:+33891425 None:intergenic
TTGCAAGATGAACTGGTATA+TGG 0.282033 2_2:-33894148 Msa0248970:CDS
ATATTTGCAGTGCTCTTCTT+TGG 0.283909 2_2:-33891904 Msa0248970:intron
TACCTATAGTAGTCTGGATT+TGG 0.289717 2_2:+33892574 None:intergenic
GTCTGGATTTGGAAGGAAAT+TGG 0.313849 2_2:+33892585 None:intergenic
CCTCCTCAGAAATGTGATTA+TGG 0.333661 2_2:-33895124 Msa0248970:CDS
AAAGGGAATGTTATTATTGA+TGG 0.339245 2_2:-33895205 Msa0248970:CDS
AAGCCATGCCGGATCAAATT+AGG 0.342162 2_2:-33896341 Msa0248970:CDS
TATTGCAGACAGAGTTTGAT+AGG 0.355616 2_2:-33892634 Msa0248970:CDS
CGGGACGTCCTGCGCCGTTT+AGG 0.365130 2_2:-33896396 Msa0248970:CDS
CACTAGGTGAAACCGAAAAT+TGG 0.368660 2_2:-33891345 Msa0248970:three_prime_UTR
AGAAACACATCTGCAATGTT+TGG 0.370641 2_2:-33894088 Msa0248970:CDS
CTCGTTTGTCTGCCATTAGA+TGG 0.378616 2_2:+33896291 None:intergenic
TAAGCTCATCAAAGCCAATA+AGG 0.386395 2_2:-33891439 Msa0248970:CDS
TATACCTGATGCTGTTGTTC+CGG 0.386694 2_2:-33891387 Msa0248970:CDS
ACAGCATGGGTTGGTGAGTC+AGG 0.398551 2_2:-33893000 Msa0248970:CDS
TTTGATGAGCTTACATATAG+AGG 0.399936 2_2:+33891449 None:intergenic
GCAGATGTGTTTCTAACAAA+AGG 0.408452 2_2:+33894097 None:intergenic
CCTCCAGGCGCAATGACTAA+TGG 0.413718 2_2:+33893474 None:intergenic
GTCCAGGTTGATCAATAGTA+TGG 0.413963 2_2:+33891697 None:intergenic
TCTTCTTTGGCACCGACTCA+TGG 0.418252 2_2:-33891891 Msa0248970:CDS
TTCCACCCTGCGGAGTTAGA+TGG 0.425938 2_2:+33891549 None:intergenic
AGTTTGATAGGAGGAAACTA+TGG 0.431640 2_2:-33892622 Msa0248970:CDS
TCACCATTGAAACTGAGATT+AGG 0.436550 2_2:-33894178 Msa0248970:CDS
GACATTCATGGATGGGAACT+TGG 0.436646 2_2:-33893732 Msa0248970:intron
GTTCATCCCATCTTGGCATT+GGG 0.436669 2_2:+33894047 None:intergenic
AGTTCATCCCATCTTGGCAT+TGG 0.449368 2_2:+33894046 None:intergenic
TTAGACGGGACGGGCCTAAA+CGG 0.450146 2_2:+33896382 None:intergenic
ACACACCACATTTATAGCCT+TGG 0.452398 2_2:-33893387 Msa0248970:CDS
CGACAGTTGTGCTGTTGTCC+AGG 0.453988 2_2:+33891681 None:intergenic
GTGATTATGGTACATGTAGT+TGG 0.454586 2_2:-33895111 Msa0248970:CDS
TTCCAAATCCAGACTACTAT+AGG 0.457974 2_2:-33892576 Msa0248970:intron
TCTCAGTTTCAATGGTGAAA+AGG 0.460420 2_2:+33894183 None:intergenic
ATTGATGGTAGTTCTGTGAT+TGG 0.461680 2_2:-33895190 Msa0248970:CDS
TTTGTGCAACTTTGGATTGG+TGG 0.462446 2_2:-33895147 Msa0248970:CDS
TGGCAGTTTGCAAGATGAAC+TGG 0.463605 2_2:-33894155 Msa0248970:CDS
TCTCACCACACTCCATCTAA+TGG 0.464265 2_2:-33896303 Msa0248970:CDS
TGCAAGATGAACTGGTATAT+GGG 0.470523 2_2:-33894147 Msa0248970:CDS
TGATTAAGTTCATCCCATCT+TGG 0.471533 2_2:+33894040 None:intergenic
CATTAATACCTATAGTAGTC+TGG 0.471916 2_2:+33892568 None:intergenic
TTATTTGTGCAACTTTGGAT+TGG 0.472089 2_2:-33895150 Msa0248970:CDS
CGTCTAAGCCCGCTTAAAAT+GGG 0.476229 2_2:-33896366 Msa0248970:CDS
TGATTATGGTACATGTAGTT+GGG 0.480870 2_2:-33895110 Msa0248970:CDS
GGTGTAGTTCCAAGGTCCTT+CGG 0.481619 2_2:+33893797 None:intergenic
GTACTATCAACTACCTTCTC+AGG 0.482836 2_2:-33891860 Msa0248970:CDS
CAAGCCGGAACAACAGCATC+AGG 0.484868 2_2:+33891383 None:intergenic
ATCTAATAAATCTGTGGATG+TGG 0.485447 2_2:-33893412 Msa0248970:CDS
CCACCTAATCTCAGTTTCAA+TGG 0.488877 2_2:+33894175 None:intergenic
TTAAGAAAATCTTGTTGTTG+AGG 0.489628 2_2:+33894339 None:intergenic
AACCGAAAATTGGTGTTACT+TGG 0.489973 2_2:-33891335 Msa0248970:three_prime_UTR
TGGACTAGGGATGGCCAAGC+GGG 0.490107 2_2:-33896415 None:intergenic
GGAAAGAACTACGACATTCA+TGG 0.497772 2_2:-33893744 Msa0248970:CDS
CTCGATCGCCTAATTTGATC+CGG 0.498936 2_2:+33896333 None:intergenic
ATTCAATTAATGGTAACCAT+AGG 0.502878 2_2:+33891208 None:intergenic
AGCCAAGTCATGTTACTGAA+TGG 0.504434 2_2:-33891518 Msa0248970:CDS
CTTCTTTGGCACCGACTCAT+GGG 0.507966 2_2:-33891890 Msa0248970:CDS
AACAGGTATTTGGATCAACT+TGG 0.508810 2_2:-33892685 Msa0248970:intron
CATGGGTTGGTGAGTCAGGA+GGG 0.509443 2_2:-33892996 Msa0248970:CDS
CTTACATATAGAGGCTTCAA+AGG 0.510130 2_2:+33891458 None:intergenic
TTCAATTAATGGTAACCATA+GGG 0.512874 2_2:+33891209 None:intergenic
ATGATGAAGATGTGAAGAAA+GGG 0.517391 2_2:-33895222 Msa0248970:CDS
TTGAATAAACGATTCAGCAT+TGG 0.517898 2_2:+33893776 None:intergenic
GGTGCCTCCCAATGCCAAGA+TGG 0.519720 2_2:-33894054 Msa0248970:CDS
AGAGACAAAACTACATTCAA+AGG 0.521273 2_2:-33893060 Msa0248970:CDS
TTCCATTCAGTAACATGACT+TGG 0.524741 2_2:+33891516 None:intergenic
TATGGAAAGTCGGTACATCA+TGG 0.524959 2_2:-33893825 Msa0248970:CDS
TGAGAAAATACAATGGAGAA+AGG 0.526211 2_2:+33891410 None:intergenic
TATCTTGTTTGTTCCTGAGA+AGG 0.526469 2_2:+33891847 None:intergenic
AAGCCATTAGTCATTGCGCC+TGG 0.532443 2_2:-33893477 Msa0248970:CDS
TTTCTAACAAAAGGAGTGCA+TGG 0.533788 2_2:+33894106 None:intergenic
ATAAGGCATCTTTCTATGCA+AGG 0.539067 2_2:+33891631 None:intergenic
AGAGTACCATCTAACTCCGC+AGG 0.539740 2_2:-33891555 Msa0248970:CDS
ACGGCGCAGGACGTCCCGCT+TGG 0.543490 2_2:+33896401 None:intergenic
TAAGCGGGCTTAGACGGGAC+GGG 0.545648 2_2:+33896373 None:intergenic
GTTGCATCAAAGAAACCTCC+AGG 0.545777 2_2:+33893459 None:intergenic
GCGGCTAGCGATGTTGCACT+AGG 0.545780 2_2:-33891361 Msa0248970:exon
CATCCCATCTTGGCATTGGG+AGG 0.547394 2_2:+33894050 None:intergenic
TGCCAGGCAATGAATTGAGT+GGG 0.549744 2_2:-33893596 Msa0248970:intron
CAACATCGCTAGCCGCAAGC+CGG 0.551023 2_2:+33891368 None:intergenic
GGCGCAATGACTAATGGCTT+AGG 0.552752 2_2:+33893480 None:intergenic
TATGATGAAGATGTGAAGAA+AGG 0.552887 2_2:-33895223 Msa0248970:CDS
GTGCCTCCCAATGCCAAGAT+GGG 0.557147 2_2:-33894053 Msa0248970:CDS
TTGTCTCTATCAAGATAGGA+AGG 0.557907 2_2:+33893075 None:intergenic
TGGCACCGACTCATGGGAAG+AGG 0.564366 2_2:-33891884 Msa0248970:CDS
TCGCCTAATTTGATCCGGCA+TGG 0.565578 2_2:+33896338 None:intergenic
CACATTTATAGCCTTGGACC+AGG 0.565926 2_2:-33893381 Msa0248970:intron
ATGGTTATACCGAAGGACCT+TGG 0.569089 2_2:-33893806 Msa0248970:CDS
GCATGGGTTGGTGAGTCAGG+AGG 0.569855 2_2:-33892997 Msa0248970:CDS
TAAAATGGGACAAGCCATGC+CGG 0.570297 2_2:-33896352 Msa0248970:CDS
GGGACGGGCCTAAACGGCGC+AGG 0.571582 2_2:+33896388 None:intergenic
TCGTTTATTCAATACACCGT+TGG 0.574205 2_2:-33893765 Msa0248970:CDS
ATGGGTTGGTGAGTCAGGAG+GGG 0.574317 2_2:-33892995 Msa0248970:CDS
GAATGCTCTTTATGGAAAGT+CGG 0.575537 2_2:-33893835 Msa0248970:CDS
TACCATACTATTGATCAACC+TGG 0.578422 2_2:-33891699 Msa0248970:CDS
TCAGCATTGGTGTAGTTCCA+AGG 0.579128 2_2:+33893789 None:intergenic
ACCAACCCATGCTGTTGCTG+AGG 0.580019 2_2:+33893008 None:intergenic
GAACTACGACATTCATGGAT+GGG 0.580115 2_2:-33893739 Msa0248970:CDS
CAGGAACCTCAGCAACAGCA+TGG 0.580368 2_2:-33893014 Msa0248970:CDS
ACCTCAGCAACAGCATGGGT+TGG 0.582674 2_2:-33893009 Msa0248970:CDS
CCATTGAAACTGAGATTAGG+TGG 0.583219 2_2:-33894175 Msa0248970:CDS
ATGCATCGGATACAAGATGA+TGG 0.592109 2_2:+33892959 None:intergenic
AGAACTACGACATTCATGGA+TGG 0.592767 2_2:-33893740 Msa0248970:CDS
GGCAAAAGGTACCTGGTCCA+AGG 0.595211 2_2:+33893370 None:intergenic
GATGCTGTTGTTCCGGCTTG+CGG 0.598210 2_2:-33891380 Msa0248970:CDS
GCAATGTTTGGATTCACACA+AGG 0.602737 2_2:-33894076 Msa0248970:CDS
TTAAGCGGGCTTAGACGGGA+CGG 0.603165 2_2:+33896372 None:intergenic
CTGCCAGGCAATGAATTGAG+TGG 0.607955 2_2:-33893597 Msa0248970:intron
GTCTGCCATTAGATGGAGTG+TGG 0.608347 2_2:+33896298 None:intergenic
TGGATTTGGAAGGAAATTGG+TGG 0.609819 2_2:+33892588 None:intergenic
TATAGTAGTCTGGATTTGGA+AGG 0.610207 2_2:+33892578 None:intergenic
AAGCAAATCTAATAAATCTG+TGG 0.613723 2_2:-33893418 Msa0248970:CDS
GAAACTATACACAAATGCAT+CGG 0.619169 2_2:+33892945 None:intergenic
TGCAGACAGAGTTTGATAGG+AGG 0.621831 2_2:-33892631 Msa0248970:CDS
AGGAGTTGATACGCACCTTG+TGG 0.627565 2_2:-33893112 Msa0248970:CDS
CCATTAGTCATTGCGCCTGG+AGG 0.629727 2_2:-33893474 Msa0248970:CDS
AGGAACCTCAGCAACAGCAT+GGG 0.631168 2_2:-33893013 Msa0248970:CDS
CTGGTCCAAGGCTATAAATG+TGG 0.631236 2_2:+33893382 None:intergenic
GTACACCTCTTCCCATGAGT+CGG 0.633975 2_2:+33891879 None:intergenic
CCATAATCACATTTCTGAGG+AGG 0.634288 2_2:+33895124 None:intergenic
AATGTCGTAGTTCTTTCCAA+CGG 0.638412 2_2:+33893749 None:intergenic
GGACAACAGCACAACTGTCG+AGG 0.638996 2_2:-33891678 Msa0248970:CDS
ACATATAGAGGCTTCAAAGG+AGG 0.639329 2_2:+33891461 None:intergenic
CAATGTTTGGATTCACACAA+GGG 0.641441 2_2:-33894075 Msa0248970:CDS
GTACATCATGGTTATACCGA+AGG 0.643559 2_2:-33893813 Msa0248970:CDS
GAGTACCATCTAACTCCGCA+GGG 0.652255 2_2:-33891554 Msa0248970:CDS
GATTATGGTACATGTAGTTG+GGG 0.660234 2_2:-33895109 Msa0248970:CDS
GAGGTTTCTTTGATGCAACG+TGG 0.664358 2_2:-33893455 Msa0248970:CDS
GTACCATAATCACATTTCTG+AGG 0.667698 2_2:+33895121 None:intergenic
CTATGTATATTTCCACCCTG+CGG 0.668963 2_2:+33891539 None:intergenic
TCAGGAGGGGCTTATAACAG+TGG 0.681174 2_2:-33892982 Msa0248970:CDS
AGGTATATGAGAAAATACAA+TGG 0.684429 2_2:+33891403 None:intergenic
GCCAGGCAATGAATTGAGTG+GGG 0.692114 2_2:-33893595 Msa0248970:intron
TACCATCTAACTCCGCAGGG+TGG 0.692178 2_2:-33891551 Msa0248970:CDS
AACACAGTGAGTGATGAAAG+TGG 0.692880 2_2:-33895247 Msa0248970:intron
TTGGACTAGGGATGGCCAAG+CGG 0.701637 2_2:-33896416 None:intergenic
CCAGGCAATGAATTGAGTGG+GGG 0.705025 2_2:-33893594 Msa0248970:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTAATTAATTAACTTCT+TGG - chr2_2:33892891-33892910 Msa0248970:intron 10.0%
!! CTATTAATCAATAAATTAAA+TGG + chr2_2:33893122-33893141 None:intergenic 10.0%
!!! CTGATAATAATTTTAAAAAA+TGG + chr2_2:33894799-33894818 None:intergenic 10.0%
!!! TTCATTATTTTTGAATTATA+AGG + chr2_2:33895957-33895976 None:intergenic 10.0%
!!! TTATCATTTTGGATTTATTT+TGG + chr2_2:33891565-33891584 None:intergenic 15.0%
!!! TTAGACTAATTTTATCATTT+TGG + chr2_2:33891576-33891595 None:intergenic 15.0%
!!! GATAAAATTAGTCTAAAAAA+AGG - chr2_2:33891580-33891599 Msa0248970:CDS 15.0%
!!! TATATTTTTTTTAAGGAGAT+AGG + chr2_2:33891789-33891808 None:intergenic 15.0%
!! ATGAAATGAATATAAGAAAA+GGG + chr2_2:33891938-33891957 None:intergenic 15.0%
!!! ATATTTGTTCTTATTTGTTT+TGG - chr2_2:33892533-33892552 Msa0248970:intron 15.0%
!!! TATTGTTATTGTGATAAAAA+TGG - chr2_2:33893288-33893307 Msa0248970:intron 15.0%
!!! ATTGTTAAACTGTTTATTTT+AGG - chr2_2:33893690-33893709 Msa0248970:intron 15.0%
!!! TTGTTAAACTGTTTATTTTA+GGG - chr2_2:33893691-33893710 Msa0248970:intron 15.0%
!!! AGAAATAATTGATGATTTAA+AGG + chr2_2:33894412-33894431 None:intergenic 15.0%
!! ATATGCATAGAATAAATTTG+TGG - chr2_2:33891429-33891448 Msa0248970:CDS 20.0%
!! TGATAATTAACAGCAAAATA+AGG - chr2_2:33891489-33891508 Msa0248970:CDS 20.0%
!! GATGAAATGAATATAAGAAA+AGG + chr2_2:33891939-33891958 None:intergenic 20.0%
!! TTATTTAAGAAAGAGTTCTA+CGG + chr2_2:33892026-33892045 None:intergenic 20.0%
!! GATTATGTCTATATACTATT+TGG - chr2_2:33892275-33892294 Msa0248970:intron 20.0%
!!! TTTTTATTTGCAGATTAACT+TGG + chr2_2:33892689-33892708 None:intergenic 20.0%
!! AAGAATGAGAAACATTATTA+TGG - chr2_2:33895129-33895148 Msa0248970:CDS 20.0%
!!! TTTTTTGTTTGTTGAGAAAT+AGG - chr2_2:33896312-33896331 Msa0248970:CDS 20.0%
!! TTCATAATGCATTCAATTAA+TGG + chr2_2:33896373-33896392 None:intergenic 20.0%
!!! AAACAAAGTTTTTTGTTCGT+CGG + chr2_2:33891316-33891335 None:intergenic 25.0%
! AATAAATTTGTGGTAGAAAC+AGG - chr2_2:33891439-33891458 Msa0248970:CDS 25.0%
! AACAGCAAAATAAGGAAAAT+CGG - chr2_2:33891497-33891516 Msa0248970:CDS 25.0%
!!! TTTGGATTTATTTTGGTTGT+TGG + chr2_2:33891558-33891577 None:intergenic 25.0%
! ATATATGATAAATGTCTAGC+TGG + chr2_2:33892070-33892089 None:intergenic 25.0%
! AAAGGGAATGTTATTATTGA+TGG - chr2_2:33892363-33892382 Msa0248970:intron 25.0%
!!! TGATTTTATTTGTGCAACTT+TGG - chr2_2:33892413-33892432 Msa0248970:intron 25.0%
!!! TATTTGTTTTGGAATCTTCA+AGG - chr2_2:33892544-33892563 Msa0248970:intron 25.0%
!!! TGAATTTTAGAATGTTTGCT+TGG - chr2_2:33892567-33892586 Msa0248970:intron 25.0%
!!! CAAAACATTGTTGCTTTTTA+TGG + chr2_2:33892715-33892734 None:intergenic 25.0%
!!! TCTTGTTTTCTACAAACAAT+GGG + chr2_2:33892766-33892785 None:intergenic 25.0%
!!! ATCTTGTTTTCTACAAACAA+TGG + chr2_2:33892767-33892786 None:intergenic 25.0%
!!! AAATCTTGTGCATTTTTTCA+AGG - chr2_2:33893164-33893183 Msa0248970:intron 25.0%
!!! TTAAGAAAATCTTGTTGTTG+AGG + chr2_2:33893232-33893251 None:intergenic 25.0%
!! ATTTTCTTAAATGCAGTGAA+AGG - chr2_2:33893242-33893261 Msa0248970:intron 25.0%
! TATCACAATAACAATAGAGA+TGG + chr2_2:33893284-33893303 None:intergenic 25.0%
!!! TTTAGGGCTAAGATTATTTT+TGG - chr2_2:33893707-33893726 Msa0248970:intron 25.0%
! AATAAAATTCTTCTTGCCTA+AGG - chr2_2:33893916-33893935 Msa0248970:intron 25.0%
! AAGCAAATCTAATAAATCTG+TGG - chr2_2:33894150-33894169 Msa0248970:CDS 25.0%
!! TACTTTCAAGAACATTTTTC+AGG + chr2_2:33894534-33894553 None:intergenic 25.0%
!! AAAAATGTTCTTGAAAGTAC+AGG - chr2_2:33894535-33894554 Msa0248970:intron 25.0%
!!! ATTATTATCAGTGTTGTTTC+CGG - chr2_2:33894808-33894827 Msa0248970:intron 25.0%
! AATGTCATTGTATCATTAAC+AGG - chr2_2:33894866-33894885 Msa0248970:intron 25.0%
! TTGTATCATTAACAGGTATT+TGG - chr2_2:33894873-33894892 Msa0248970:intron 25.0%
!! TTCAATGTGTTAGTTCATTT+TGG - chr2_2:33895185-33895204 Msa0248970:CDS 25.0%
!! TCAATGTGTTAGTTCATTTT+GGG - chr2_2:33895186-33895205 Msa0248970:CDS 25.0%
! CTTAATATATGTGTCATGTT+TGG - chr2_2:33895528-33895547 Msa0248970:intron 25.0%
! ATGTTACCATGAAAATACTA+TGG + chr2_2:33895619-33895638 None:intergenic 25.0%
!! TTTTCATGGTAACATTTTTG+TGG - chr2_2:33895624-33895643 Msa0248970:intron 25.0%
! TCATTCACTTGATATTCATA+GGG + chr2_2:33895796-33895815 None:intergenic 25.0%
! ATCATTCACTTGATATTCAT+AGG + chr2_2:33895797-33895816 None:intergenic 25.0%
! GAATGATGTATAATAACCTT+AGG - chr2_2:33895810-33895829 Msa0248970:intron 25.0%
!!! TTTTCAATTGAACTTTGAAG+TGG + chr2_2:33895984-33896003 None:intergenic 25.0%
! AGGTATATGAGAAAATACAA+TGG + chr2_2:33896168-33896187 None:intergenic 25.0%
! TTCAATTAATGGTAACCATA+GGG + chr2_2:33896362-33896381 None:intergenic 25.0%
! ATTCAATTAATGGTAACCAT+AGG + chr2_2:33896363-33896382 None:intergenic 25.0%
!!! AACAAAGTTTTTTGTTCGTC+GGG + chr2_2:33891315-33891334 None:intergenic 30.0%
!!! GTTGCAGATTTGTTTTATGT+TGG + chr2_2:33891523-33891542 None:intergenic 30.0%
AAAAAAGGAAACGACTTAAG+CGG - chr2_2:33891595-33891614 Msa0248970:CDS 30.0%
GCTTAACTCATTGAAAAAAC+GGG + chr2_2:33891636-33891655 None:intergenic 30.0%
CGCTTAACTCATTGAAAAAA+CGG + chr2_2:33891637-33891656 None:intergenic 30.0%
!!! CGTTTTTTCAATGAGTTAAG+CGG - chr2_2:33891635-33891654 Msa0248970:CDS 30.0%
!!! TTTAACCTGCTATTTTTTGC+GGG + chr2_2:33891685-33891704 None:intergenic 30.0%
!!! GTTTAACCTGCTATTTTTTG+CGG + chr2_2:33891686-33891705 None:intergenic 30.0%
GCAAAAAATAGCAGGTTAAA+CGG - chr2_2:33891685-33891704 Msa0248970:CDS 30.0%
CAAAAAATAGCAGGTTAAAC+GGG - chr2_2:33891686-33891705 Msa0248970:CDS 30.0%
ATGTCTCTAACAAGATAGTT+AGG + chr2_2:33891753-33891772 None:intergenic 30.0%
! TGTTATTAATGCGCTTTTGT+GGG + chr2_2:33891861-33891880 None:intergenic 30.0%
!! TTGTTATTAATGCGCTTTTG+TGG + chr2_2:33891862-33891881 None:intergenic 30.0%
ATCAACAACATGTTTGATGT+TGG + chr2_2:33892191-33892210 None:intergenic 30.0%
AAAGACAAAGATCTTGAGTT+TGG - chr2_2:33892223-33892242 Msa0248970:intron 30.0%
TGTCTATATACTATTTGGCA+TGG - chr2_2:33892280-33892299 Msa0248970:intron 30.0%
TATGATGAAGATGTGAAGAA+AGG - chr2_2:33892345-33892364 Msa0248970:intron 30.0%
ATGATGAAGATGTGAAGAAA+GGG - chr2_2:33892346-33892365 Msa0248970:intron 30.0%
TTATTTGTGCAACTTTGGAT+TGG - chr2_2:33892418-33892437 Msa0248970:intron 30.0%
TGATTATGGTACATGTAGTT+GGG - chr2_2:33892458-33892477 Msa0248970:intron 30.0%
!! TGTTTTCGAAATGTTGTTTG+AGG - chr2_2:33892642-33892661 Msa0248970:CDS 30.0%
! ATAATAATCCTGTTTTCTGC+AGG - chr2_2:33892853-33892872 Msa0248970:intron 30.0%
! TAATAATCCTGTTTTCTGCA+GGG - chr2_2:33892854-33892873 Msa0248970:intron 30.0%
!! TAATTTTGATCTATGAAGCG+CGG - chr2_2:33892923-33892942 Msa0248970:intron 30.0%
TTCAGTGTAATTACAAGTGT+CGG - chr2_2:33893001-33893020 Msa0248970:CDS 30.0%
AATCATTTCTTCCAAAAAGC+AGG - chr2_2:33893546-33893565 Msa0248970:CDS 30.0%
ATCATTTCTTCCAAAAAGCA+GGG - chr2_2:33893547-33893566 Msa0248970:CDS 30.0%
!! CTAAATTTTACCCTGCTTTT+TGG + chr2_2:33893560-33893579 None:intergenic 30.0%
TTTGGATTGAATGCTCTTTA+TGG - chr2_2:33893725-33893744 Msa0248970:intron 30.0%
TTGAATAAACGATTCAGCAT+TGG + chr2_2:33893795-33893814 None:intergenic 30.0%
ATCTAATAAATCTGTGGATG+TGG - chr2_2:33894156-33894175 Msa0248970:CDS 30.0%
!!! AAGTTCTTTATTTTGCCACA+TGG + chr2_2:33894344-33894363 None:intergenic 30.0%
! ACATAATTTGTCTTCTACAC+AGG - chr2_2:33894436-33894455 Msa0248970:intron 30.0%
!!! GATTCAGAATTTTTTCCACA+AGG + chr2_2:33894474-33894493 None:intergenic 30.0%
!! AGTTTTGTCTCTATCAAGAT+AGG + chr2_2:33894500-33894519 None:intergenic 30.0%
AGAGACAAAACTACATTCAA+AGG - chr2_2:33894508-33894527 Msa0248970:intron 30.0%
GAAACTATACACAAATGCAT+CGG + chr2_2:33894626-33894645 None:intergenic 30.0%
ATGCATTTGTGTATAGTTTC+TGG - chr2_2:33894626-33894645 Msa0248970:intron 30.0%
TCCTTGATTTAGACTCATTT+AGG - chr2_2:33894669-33894688 Msa0248970:intron 30.0%
CCTTGATTTAGACTCATTTA+GGG - chr2_2:33894670-33894689 Msa0248970:intron 30.0%
CTTGATTTAGACTCATTTAG+GGG - chr2_2:33894671-33894690 Msa0248970:intron 30.0%
!! TAGTTCTAAGATATGTAGCA+CGG + chr2_2:33894837-33894856 None:intergenic 30.0%
CATTAATACCTATAGTAGTC+TGG + chr2_2:33895003-33895022 None:intergenic 30.0%
ATGTTTCTCATTCTTTAGCA+AGG + chr2_2:33895124-33895143 None:intergenic 30.0%
GAACTAACACATTGAAAAAG+TGG + chr2_2:33895181-33895200 None:intergenic 30.0%
GATATGAGAATCAATGCTAA+GGG + chr2_2:33895291-33895310 None:intergenic 30.0%
TGATATGAGAATCAATGCTA+AGG + chr2_2:33895292-33895311 None:intergenic 30.0%
!! TAGCATTGATTCTCATATCA+CGG - chr2_2:33895292-33895311 Msa0248970:intron 30.0%
ACATACAACTTTGTCTACTT+TGG - chr2_2:33895566-33895585 Msa0248970:intron 30.0%
! ATCCATCCATAGTATTTTCA+TGG - chr2_2:33895610-33895629 Msa0248970:intron 30.0%
TACCATGAAAATACTATGGA+TGG + chr2_2:33895615-33895634 None:intergenic 30.0%
! GCATATTAGTTTAGATCCTA+AGG + chr2_2:33895829-33895848 None:intergenic 30.0%
ATATGCTTGATCTTACAGAA+AGG - chr2_2:33895843-33895862 Msa0248970:intron 30.0%
!! GTTTTAAGTGTAAACTCAGA+TGG - chr2_2:33896077-33896096 Msa0248970:intron 30.0%
TTTGATGAGCTTACATATAG+AGG + chr2_2:33896122-33896141 None:intergenic 30.0%
TGAGAAAATACAATGGAGAA+AGG + chr2_2:33896161-33896180 None:intergenic 30.0%
! GTTGAGAAATAGGATTTTGA+TGG - chr2_2:33896322-33896341 Msa0248970:CDS 30.0%
!!! GTTTTTTTTTTGCTTCCCTA+TGG - chr2_2:33896344-33896363 Msa0248970:CDS 30.0%
TAACTCATTGAAAAAACGGG+CGG + chr2_2:33891633-33891652 None:intergenic 35.0%
TCTCTAACAAGATAGTTAGG+TGG + chr2_2:33891750-33891769 None:intergenic 35.0%
AAATATTCTCTCACCAACGT+CGG - chr2_2:33891910-33891929 Msa0248970:intron 35.0%
TGATAAATGTCTAGCTGGTT+GGG + chr2_2:33892065-33892084 None:intergenic 35.0%
ATGATAAATGTCTAGCTGGT+TGG + chr2_2:33892066-33892085 None:intergenic 35.0%
! GTAGTAAAGGTTTTACTGCT+GGG + chr2_2:33892162-33892181 None:intergenic 35.0%
! ACATGTTTGATGTTGGTGAA+GGG + chr2_2:33892184-33892203 None:intergenic 35.0%
! AACATGTTTGATGTTGGTGA+AGG + chr2_2:33892185-33892204 None:intergenic 35.0%
! ATCTTGAGTTTGGTTGATTC+TGG - chr2_2:33892233-33892252 Msa0248970:intron 35.0%
! AGTTTGGTTGATTCTGGAAA+TGG - chr2_2:33892239-33892258 Msa0248970:intron 35.0%
! GTTTGGTTGATTCTGGAAAT+GGG - chr2_2:33892240-33892259 Msa0248970:intron 35.0%
! ATTGATGGTAGTTCTGTGAT+TGG - chr2_2:33892378-33892397 Msa0248970:intron 35.0%
GTACCATAATCACATTTCTG+AGG + chr2_2:33892450-33892469 None:intergenic 35.0%
GTGATTATGGTACATGTAGT+TGG - chr2_2:33892457-33892476 Msa0248970:intron 35.0%
GATTATGGTACATGTAGTTG+GGG - chr2_2:33892459-33892478 Msa0248970:intron 35.0%
TCTTGCTTCTCTTCTCAATT+TGG - chr2_2:33892482-33892501 Msa0248970:intron 35.0%
! TTTGAGGTTTGAATGCATGT+TGG - chr2_2:33892658-33892677 Msa0248970:CDS 35.0%
TTGAGGTTTGAATGCATGTT+GGG - chr2_2:33892659-33892678 Msa0248970:CDS 35.0%
TCTGTTCTGTCATTGTTATG+TGG + chr2_2:33892803-33892822 None:intergenic 35.0%
AGATCAAAACCTATGAAGCA+CGG + chr2_2:33893090-33893109 None:intergenic 35.0%
!!! TTTTTTTTTTCATCTCGCGC+AGG - chr2_2:33893205-33893224 Msa0248970:intron 35.0%
TCTCAGTTTCAATGGTGAAA+AGG + chr2_2:33893388-33893407 None:intergenic 35.0%
TCACCATTGAAACTGAGATT+AGG - chr2_2:33893390-33893409 Msa0248970:CDS 35.0%
TTGCAAGATGAACTGGTATA+TGG - chr2_2:33893420-33893439 Msa0248970:CDS 35.0%
TGCAAGATGAACTGGTATAT+GGG - chr2_2:33893421-33893440 Msa0248970:CDS 35.0%
! TTTCTAACAAAAGGAGTGCA+TGG + chr2_2:33893465-33893484 None:intergenic 35.0%
! GCAGATGTGTTTCTAACAAA+AGG + chr2_2:33893474-33893493 None:intergenic 35.0%
AGAAACACATCTGCAATGTT+TGG - chr2_2:33893480-33893499 Msa0248970:CDS 35.0%
CAATGTTTGGATTCACACAA+GGG - chr2_2:33893493-33893512 Msa0248970:CDS 35.0%
TGATTAAGTTCATCCCATCT+TGG + chr2_2:33893531-33893550 None:intergenic 35.0%
GAATGCTCTTTATGGAAAGT+CGG - chr2_2:33893733-33893752 Msa0248970:CDS 35.0%
TCGTTTATTCAATACACCGT+TGG - chr2_2:33893803-33893822 Msa0248970:CDS 35.0%
AATGTCGTAGTTCTTTCCAA+CGG + chr2_2:33893822-33893841 None:intergenic 35.0%
GTAATGAATATCAGCCAACT+CGG + chr2_2:33894222-33894241 None:intergenic 35.0%
! TTTTGCCACATGGAAAATAG+AGG + chr2_2:33894334-33894353 None:intergenic 35.0%
TTGTCTCTATCAAGATAGGA+AGG + chr2_2:33894496-33894515 None:intergenic 35.0%
CCCTAAATGAGTCTAAATCA+AGG + chr2_2:33894673-33894692 None:intergenic 35.0%
! ATGCCTTCAATCTAAAGTGT+CGG + chr2_2:33894716-33894735 None:intergenic 35.0%
! ACTTTAGATTGAAGGCATGT+CGG - chr2_2:33894718-33894737 Msa0248970:intron 35.0%
TTGAATGTAACCACTTGTGT+CGG + chr2_2:33894770-33894789 None:intergenic 35.0%
AACAGGTATTTGGATCAACT+TGG - chr2_2:33894883-33894902 Msa0248970:intron 35.0%
TATTGCAGACAGAGTTTGAT+AGG - chr2_2:33894934-33894953 Msa0248970:intron 35.0%
AGTTTGATAGGAGGAAACTA+TGG - chr2_2:33894946-33894965 Msa0248970:intron 35.0%
TATAGTAGTCTGGATTTGGA+AGG + chr2_2:33894993-33895012 None:intergenic 35.0%
TTCCAAATCCAGACTACTAT+AGG - chr2_2:33894992-33895011 Msa0248970:intron 35.0%
TACCTATAGTAGTCTGGATT+TGG + chr2_2:33894997-33895016 None:intergenic 35.0%
! AAAGCAATGTAGAGTATTCG+AGG - chr2_2:33895443-33895462 Msa0248970:intron 35.0%
ATATTTGCAGTGCTCTTCTT+TGG - chr2_2:33895664-33895683 Msa0248970:intron 35.0%
! TATCTTGTTTGTTCCTGAGA+AGG + chr2_2:33895724-33895743 None:intergenic 35.0%
TACCATACTATTGATCAACC+TGG - chr2_2:33895869-33895888 Msa0248970:intron 35.0%
! ATAAGGCATCTTTCTATGCA+AGG + chr2_2:33895940-33895959 None:intergenic 35.0%
TTCCATTCAGTAACATGACT+TGG + chr2_2:33896055-33896074 None:intergenic 35.0%
CTTACATATAGAGGCTTCAA+AGG + chr2_2:33896113-33896132 None:intergenic 35.0%
TAAGCTCATCAAAGCCAATA+AGG - chr2_2:33896129-33896148 Msa0248970:intron 35.0%
!! AACCGAAAATTGGTGTTACT+TGG - chr2_2:33896233-33896252 Msa0248970:intron 35.0%
! CACCAAGTAACACCAATTTT+CGG + chr2_2:33896238-33896257 None:intergenic 35.0%
!! ATGGCTTGTCCCATTTTAAG+CGG + chr2_2:33891214-33891233 None:intergenic 40.0%
AACTCATTGAAAAAACGGGC+GGG + chr2_2:33891632-33891651 None:intergenic 40.0%
TTCAACCCGCAAAAAATAGC+AGG - chr2_2:33891677-33891696 Msa0248970:CDS 40.0%
! GGTAGTAAAGGTTTTACTGC+TGG + chr2_2:33892163-33892182 None:intergenic 40.0%
! ATGTTGGTGAAGGGTAGTAA+AGG + chr2_2:33892175-33892194 None:intergenic 40.0%
! TGATTCTGGAAATGGGTTCT+TGG - chr2_2:33892247-33892266 Msa0248970:intron 40.0%
AACACAGTGAGTGATGAAAG+TGG - chr2_2:33892321-33892340 Msa0248970:intron 40.0%
! TTTGTGCAACTTTGGATTGG+TGG - chr2_2:33892421-33892440 Msa0248970:intron 40.0%
! CCATAATCACATTTCTGAGG+AGG + chr2_2:33892447-33892466 None:intergenic 40.0%
CCTCCTCAGAAATGTGATTA+TGG - chr2_2:33892444-33892463 Msa0248970:intron 40.0%
CAATAAACCCTGCAGAAAAC+AGG + chr2_2:33892864-33892883 None:intergenic 40.0%
GTCGACACTGCTAATAATCT+GGG - chr2_2:33892962-33892981 Msa0248970:CDS 40.0%
TCGACACTGCTAATAATCTG+GGG - chr2_2:33892963-33892982 Msa0248970:CDS 40.0%
CCACCTAATCTCAGTTTCAA+TGG + chr2_2:33893396-33893415 None:intergenic 40.0%
CCATTGAAACTGAGATTAGG+TGG - chr2_2:33893393-33893412 Msa0248970:CDS 40.0%
GCAATGTTTGGATTCACACA+AGG - chr2_2:33893492-33893511 Msa0248970:CDS 40.0%
! CGTGAGTGTTTTGTGAGTAA+TGG - chr2_2:33893624-33893643 Msa0248970:intron 40.0%
!! TGAGTAATGGATTCACCTTC+TGG - chr2_2:33893637-33893656 Msa0248970:intron 40.0%
GCATAGTTTACAACTCCAGA+AGG + chr2_2:33893655-33893674 None:intergenic 40.0%
TATGGAAAGTCGGTACATCA+TGG - chr2_2:33893743-33893762 Msa0248970:CDS 40.0%
GTACATCATGGTTATACCGA+AGG - chr2_2:33893755-33893774 Msa0248970:CDS 40.0%
GGAAAGAACTACGACATTCA+TGG - chr2_2:33893824-33893843 Msa0248970:CDS 40.0%
AGAACTACGACATTCATGGA+TGG - chr2_2:33893828-33893847 Msa0248970:CDS 40.0%
GAACTACGACATTCATGGAT+GGG - chr2_2:33893829-33893848 Msa0248970:CDS 40.0%
ACTCAATGTACTCAAGCCTT+AGG + chr2_2:33893935-33893954 None:intergenic 40.0%
ACACACCACATTTATAGCCT+TGG - chr2_2:33894181-33894200 Msa0248970:CDS 40.0%
GGAAAATAGAGGACTCGTAT+TGG + chr2_2:33894323-33894342 None:intergenic 40.0%
ATGCATCGGATACAAGATGA+TGG + chr2_2:33894612-33894631 None:intergenic 40.0%
TGAGTCTAAATCAAGGATCG+AGG + chr2_2:33894666-33894685 None:intergenic 40.0%
ACACCGACACTTTAGATTGA+AGG - chr2_2:33894710-33894729 Msa0248970:intron 40.0%
TGGATTTGGAAGGAAATTGG+TGG + chr2_2:33894983-33895002 None:intergenic 40.0%
GTCTGGATTTGGAAGGAAAT+TGG + chr2_2:33894986-33895005 None:intergenic 40.0%
!! CGGTTTTGTCCGTAGTTAAT+AGG - chr2_2:33895226-33895245 Msa0248970:CDS 40.0%
TTTAGCCCCTTATTGACAGT+GGG + chr2_2:33895326-33895345 None:intergenic 40.0%
ATTCACACATGCTAGCTGAA+AGG + chr2_2:33895352-33895371 None:intergenic 40.0%
AGACATTTGATTCCCACAGA+CGG - chr2_2:33895373-33895392 Msa0248970:intron 40.0%
! CAATGTAGAGTATTCGAGGT+CGG - chr2_2:33895447-33895466 Msa0248970:intron 40.0%
GGATGGATGCAGTTGAAATA+GGG + chr2_2:33895598-33895617 None:intergenic 40.0%
TGGATGGATGCAGTTGAAAT+AGG + chr2_2:33895599-33895618 None:intergenic 40.0%
GTACTATCAACTACCTTCTC+AGG - chr2_2:33895708-33895727 Msa0248970:intron 40.0%
!! GTCCAGGTTGATCAATAGTA+TGG + chr2_2:33895874-33895893 None:intergenic 40.0%
CTATGTATATTTCCACCCTG+CGG + chr2_2:33896032-33896051 None:intergenic 40.0%
AGCCAAGTCATGTTACTGAA+TGG - chr2_2:33896050-33896069 Msa0248970:intron 40.0%
ACATATAGAGGCTTCAAAGG+AGG + chr2_2:33896110-33896129 None:intergenic 40.0%
GAGAAAGGAGCAATCCTTAT+TGG + chr2_2:33896146-33896165 None:intergenic 40.0%
TATACCTGATGCTGTTGTTC+CGG - chr2_2:33896181-33896200 Msa0248970:intron 40.0%
CACTAGGTGAAACCGAAAAT+TGG - chr2_2:33896223-33896242 Msa0248970:intron 40.0%
!! CATTTTAAGCGGGCTTAGAC+GGG + chr2_2:33891203-33891222 None:intergenic 45.0%
!! CCATTTTAAGCGGGCTTAGA+CGG + chr2_2:33891204-33891223 None:intergenic 45.0%
CGTCTAAGCCCGCTTAAAAT+GGG - chr2_2:33891202-33891221 Msa0248970:three_prime_UTR 45.0%
!! TGGCTTGTCCCATTTTAAGC+GGG + chr2_2:33891213-33891232 None:intergenic 45.0%
TAAAATGGGACAAGCCATGC+CGG - chr2_2:33891216-33891235 Msa0248970:three_prime_UTR 45.0%
AAGCCATGCCGGATCAAATT+AGG - chr2_2:33891227-33891246 Msa0248970:three_prime_UTR 45.0%
CTCGATCGCCTAATTTGATC+CGG + chr2_2:33891238-33891257 None:intergenic 45.0%
! GATGGAGTGTGGTGAGATTT+TGG + chr2_2:33891262-33891281 None:intergenic 45.0%
TCTCACCACACTCCATCTAA+TGG - chr2_2:33891265-33891284 Msa0248970:three_prime_UTR 45.0%
CTCGTTTGTCTGCCATTAGA+TGG + chr2_2:33891280-33891299 None:intergenic 45.0%
ATTGAAAAAACGGGCGGGTA+CGG + chr2_2:33891627-33891646 None:intergenic 45.0%
CGTCGACACTGCTAATAATC+TGG - chr2_2:33892961-33892980 Msa0248970:CDS 45.0%
TGGCAGTTTGCAAGATGAAC+TGG - chr2_2:33893413-33893432 Msa0248970:CDS 45.0%
GTTCATCCCATCTTGGCATT+GGG + chr2_2:33893524-33893543 None:intergenic 45.0%
AGTTCATCCCATCTTGGCAT+TGG + chr2_2:33893525-33893544 None:intergenic 45.0%
ATGGTTATACCGAAGGACCT+TGG - chr2_2:33893762-33893781 Msa0248970:CDS 45.0%
!! TCAGCATTGGTGTAGTTCCA+AGG + chr2_2:33893782-33893801 None:intergenic 45.0%
GACATTCATGGATGGGAACT+TGG - chr2_2:33893836-33893855 Msa0248970:CDS 45.0%
ATTCATTGCCTGGCAGTGAA+AGG + chr2_2:33893967-33893986 None:intergenic 45.0%
TGCCAGGCAATGAATTGAGT+GGG - chr2_2:33893972-33893991 Msa0248970:intron 45.0%
GTTGCATCAAAGAAACCTCC+AGG + chr2_2:33894112-33894131 None:intergenic 45.0%
GAGGTTTCTTTGATGCAACG+TGG - chr2_2:33894113-33894132 Msa0248970:CDS 45.0%
CTGGTCCAAGGCTATAAATG+TGG + chr2_2:33894189-33894208 None:intergenic 45.0%
! CACATTTATAGCCTTGGACC+AGG - chr2_2:33894187-33894206 Msa0248970:intron 45.0%
ATATCAGCCAACTCGGCAAA+AGG + chr2_2:33894215-33894234 None:intergenic 45.0%
! CGAGTCCTCTATTTTCCATG+TGG - chr2_2:33894326-33894345 Msa0248970:intron 45.0%
AAGATATGTAGCACGGACAC+CGG + chr2_2:33894830-33894849 None:intergenic 45.0%
TGCAGACAGAGTTTGATAGG+AGG - chr2_2:33894937-33894956 Msa0248970:intron 45.0%
TCCGTAGTTAATAGGCACCT+CGG - chr2_2:33895234-33895253 Msa0248970:CDS 45.0%
! TCCGAGGTGCCTATTAACTA+CGG + chr2_2:33895238-33895257 None:intergenic 45.0%
TAGTTAATAGGCACCTCGGA+GGG - chr2_2:33895238-33895257 Msa0248970:CDS 45.0%
ACAGTAGCCCACTGTCAATA+AGG - chr2_2:33895316-33895335 Msa0248970:intron 45.0%
CAGTAGCCCACTGTCAATAA+GGG - chr2_2:33895317-33895336 Msa0248970:intron 45.0%
AGTAGCCCACTGTCAATAAG+GGG - chr2_2:33895318-33895337 Msa0248970:intron 45.0%
CTTTAGCCCCTTATTGACAG+TGG + chr2_2:33895327-33895346 None:intergenic 45.0%
CACTGTCAATAAGGGGCTAA+AGG - chr2_2:33895325-33895344 Msa0248970:intron 45.0%
GCTAATGTTCCATGTGTGAG+AGG - chr2_2:33895397-33895416 Msa0248970:intron 45.0%
ATGTTCCATGTGTGAGAGGA+AGG - chr2_2:33895401-33895420 Msa0248970:intron 45.0%
!!! TGATATATATATTTTTTTTA+AGG + chr2_2:33891796-33891815 None:intergenic 5.0%
CCGTCTAAGCCCGCTTAAAA+TGG - chr2_2:33891201-33891220 Msa0248970:three_prime_UTR 50.0%
TCGCCTAATTTGATCCGGCA+TGG + chr2_2:33891233-33891252 None:intergenic 50.0%
GTCTGCCATTAGATGGAGTG+TGG + chr2_2:33891273-33891292 None:intergenic 50.0%
TTGAAAAAACGGGCGGGTAC+GGG + chr2_2:33891626-33891645 None:intergenic 50.0%
ATAGTTAGGTGGTCCAAGCG+TGG + chr2_2:33891739-33891758 None:intergenic 50.0%
!! TAAGAAAAGGGTGCCGACGT+TGG + chr2_2:33891926-33891945 None:intergenic 50.0%
TGATCTATGAAGCGCGGACA+CGG - chr2_2:33892929-33892948 Msa0248970:intron 50.0%
!! TGTCGGTGTCATGTCGATGT+CGG - chr2_2:33893018-33893037 Msa0248970:CDS 50.0%
TATGAAGCACGGACACTCCT+CGG + chr2_2:33893079-33893098 None:intergenic 50.0%
GGTGTAGTTCCAAGGTCCTT+CGG + chr2_2:33893774-33893793 None:intergenic 50.0%
CTGCCAGGCAATGAATTGAG+TGG - chr2_2:33893971-33893990 Msa0248970:intron 50.0%
GCCAGGCAATGAATTGAGTG+GGG - chr2_2:33893973-33893992 Msa0248970:intron 50.0%
CCAGGCAATGAATTGAGTGG+GGG - chr2_2:33893974-33893993 Msa0248970:intron 50.0%
GGCGCAATGACTAATGGCTT+AGG + chr2_2:33894091-33894110 None:intergenic 50.0%
AAGCCATTAGTCATTGCGCC+TGG - chr2_2:33894091-33894110 Msa0248970:CDS 50.0%
AGAGGACTCGTATTGGACGT+CGG + chr2_2:33894316-33894335 None:intergenic 50.0%
!! AGGAGTTGATACGCACCTTG+TGG - chr2_2:33894456-33894475 Msa0248970:intron 50.0%
AGGAACCTCAGCAACAGCAT+GGG - chr2_2:33894555-33894574 Msa0248970:intron 50.0%
TCAGGAGGGGCTTATAACAG+TGG - chr2_2:33894586-33894605 Msa0248970:intron 50.0%
! TGTCGGTGTTCGACACTTGT+TGG - chr2_2:33894735-33894754 Msa0248970:intron 50.0%
! GGGTCTTGTGTAAGCTGTCA+CGG - chr2_2:33895206-33895225 Msa0248970:CDS 50.0%
GTAGTTAATAGGCACCTCGG+AGG - chr2_2:33895237-33895256 Msa0248970:CDS 50.0%
TTGGACCTTCCTCTCACACA+TGG + chr2_2:33895409-33895428 None:intergenic 50.0%
GAAGGTCCAACTGTCTGTGT+CGG - chr2_2:33895419-33895438 Msa0248970:intron 50.0%
! GCTTTTCCGACACAGACAGT+TGG + chr2_2:33895428-33895447 None:intergenic 50.0%
GAGTATTCGAGGTCGGAACA+TGG - chr2_2:33895454-33895473 Msa0248970:intron 50.0%
! GGTCGGAACATGGACTATCT+TGG - chr2_2:33895464-33895483 Msa0248970:intron 50.0%
!! TCTTCTTTGGCACCGACTCA+TGG - chr2_2:33895677-33895696 Msa0248970:intron 50.0%
!! CTTCTTTGGCACCGACTCAT+GGG - chr2_2:33895678-33895697 Msa0248970:intron 50.0%
GTACACCTCTTCCCATGAGT+CGG + chr2_2:33895692-33895711 None:intergenic 50.0%
! AGAGTACCATCTAACTCCGC+AGG - chr2_2:33896013-33896032 Msa0248970:intron 50.0%
GAGTACCATCTAACTCCGCA+GGG - chr2_2:33896014-33896033 Msa0248970:intron 50.0%
TTAGACGGGACGGGCCTAAA+CGG + chr2_2:33891189-33891208 None:intergenic 55.0%
! TTAAGCGGGCTTAGACGGGA+CGG + chr2_2:33891199-33891218 None:intergenic 55.0%
TGGTCCAAGCGTGGCAAAAC+GGG + chr2_2:33891730-33891749 None:intergenic 55.0%
GTGGTCCAAGCGTGGCAAAA+CGG + chr2_2:33891731-33891750 None:intergenic 55.0%
ATGAAGCACGGACACTCCTC+GGG + chr2_2:33893078-33893097 None:intergenic 55.0%
!! GAGGAGTGTCCGTGCTTCAT+AGG - chr2_2:33893078-33893097 Msa0248970:CDS 55.0%
GTGCCTCCCAATGCCAAGAT+GGG - chr2_2:33893515-33893534 Msa0248970:CDS 55.0%
! CATCCCATCTTGGCATTGGG+AGG + chr2_2:33893521-33893540 None:intergenic 55.0%
AGCTAGCTCCTTTCACTGCC+AGG - chr2_2:33893956-33893975 Msa0248970:intron 55.0%
CCCCCACTCAATTCATTGCC+TGG + chr2_2:33893977-33893996 None:intergenic 55.0%
GGCAATGAATTGAGTGGGGG+TGG - chr2_2:33893977-33893996 Msa0248970:intron 55.0%
GAATTGAGTGGGGGTGGAGT+TGG - chr2_2:33893983-33894002 Msa0248970:intron 55.0%
CCTCCAGGCGCAATGACTAA+TGG + chr2_2:33894097-33894116 None:intergenic 55.0%
CCATTAGTCATTGCGCCTGG+AGG - chr2_2:33894094-33894113 Msa0248970:CDS 55.0%
!! GGCAAAAGGTACCTGGTCCA+AGG + chr2_2:33894201-33894220 None:intergenic 55.0%
!! CCAACTCGGCAAAAGGTACC+TGG + chr2_2:33894208-33894227 None:intergenic 55.0%
! CCAGGTACCTTTTGCCGAGT+TGG - chr2_2:33894205-33894224 Msa0248970:intron 55.0%
CAGGAACCTCAGCAACAGCA+TGG - chr2_2:33894554-33894573 Msa0248970:intron 55.0%
ACCTCAGCAACAGCATGGGT+TGG - chr2_2:33894559-33894578 Msa0248970:intron 55.0%
ACCAACCCATGCTGTTGCTG+AGG + chr2_2:33894563-33894582 None:intergenic 55.0%
!! ACAGCATGGGTTGGTGAGTC+AGG - chr2_2:33894568-33894587 Msa0248970:intron 55.0%
!! CATGGGTTGGTGAGTCAGGA+GGG - chr2_2:33894572-33894591 Msa0248970:intron 55.0%
!! ATGGGTTGGTGAGTCAGGAG+GGG - chr2_2:33894573-33894592 Msa0248970:intron 55.0%
GTATCTCACGCCGACACAAG+TGG - chr2_2:33894757-33894776 Msa0248970:intron 55.0%
CTCGGAGGGTAGATTAGCGT+GGG - chr2_2:33895252-33895271 Msa0248970:intron 55.0%
GGAACATTAGCGCCGTCTGT+GGG + chr2_2:33895388-33895407 None:intergenic 55.0%
TGGAACATTAGCGCCGTCTG+TGG + chr2_2:33895389-33895408 None:intergenic 55.0%
! CGACAGTTGTGCTGTTGTCC+AGG + chr2_2:33895890-33895909 None:intergenic 55.0%
GGACAACAGCACAACTGTCG+AGG - chr2_2:33895890-33895909 Msa0248970:intron 55.0%
TACCATCTAACTCCGCAGGG+TGG - chr2_2:33896017-33896036 Msa0248970:intron 55.0%
TTCCACCCTGCGGAGTTAGA+TGG + chr2_2:33896022-33896041 None:intergenic 55.0%
CAAGCCGGAACAACAGCATC+AGG + chr2_2:33896188-33896207 None:intergenic 55.0%
! GATGCTGTTGTTCCGGCTTG+CGG - chr2_2:33896188-33896207 Msa0248970:intron 55.0%
! TAAGCGGGCTTAGACGGGAC+GGG + chr2_2:33891198-33891217 None:intergenic 60.0%
AAAAACGGGCGGGTACGGGA+CGG + chr2_2:33891622-33891641 None:intergenic 60.0%
GCAGGTTAAACGGGTCGACC+CGG - chr2_2:33891695-33891714 Msa0248970:CDS 60.0%
GTTAAACGGGTCGACCCGGT+GGG - chr2_2:33891699-33891718 Msa0248970:CDS 60.0%
CAAAACGGGTCCAACCCACC+GGG + chr2_2:33891716-33891735 None:intergenic 60.0%
GCAAAACGGGTCCAACCCAC+CGG + chr2_2:33891717-33891736 None:intergenic 60.0%
! TGGACCCGTTTTGCCACGCT+TGG - chr2_2:33891723-33891742 Msa0248970:intron 60.0%
ACACGACACGTGTCCGACAC+CGG - chr2_2:33893041-33893060 Msa0248970:CDS 60.0%
GGTGCCTCCCAATGCCAAGA+TGG - chr2_2:33893514-33893533 Msa0248970:CDS 60.0%
!! GCATGGGTTGGTGAGTCAGG+AGG - chr2_2:33894571-33894590 Msa0248970:intron 60.0%
CCACGCTAATCTACCCTCCG+AGG + chr2_2:33895254-33895273 None:intergenic 60.0%
CCTCGGAGGGTAGATTAGCG+TGG - chr2_2:33895251-33895270 Msa0248970:intron 60.0%
!! TGGCACCGACTCATGGGAAG+AGG - chr2_2:33895684-33895703 Msa0248970:intron 60.0%
CAACATCGCTAGCCGCAAGC+CGG + chr2_2:33896203-33896222 None:intergenic 60.0%
GCGGCTAGCGATGTTGCACT+AGG - chr2_2:33896207-33896226 Msa0248970:intron 60.0%
GGTTAAACGGGTCGACCCGG+TGG - chr2_2:33891698-33891717 Msa0248970:CDS 65.0%
CACGACACGTGTCCGACACC+GGG - chr2_2:33893042-33893061 Msa0248970:CDS 65.0%
GGTTAGGCGTGTCCCGGTGT+CGG + chr2_2:33893057-33893076 None:intergenic 65.0%
! TCCTCGGGTTAGGCGTGTCC+CGG + chr2_2:33893063-33893082 None:intergenic 65.0%
GCACGGACACTCCTCGGGTT+AGG + chr2_2:33893073-33893092 None:intergenic 65.0%
GTATCCACTCACGCGAGCGC+AGG - chr2_2:33893595-33893614 Msa0248970:intron 65.0%
CGGGACGTCCTGCGCCGTTT+AGG - chr2_2:33891172-33891191 Msa0248970:three_prime_UTR 70.0%
AACGGGTCGACCCGGTGGGT+TGG - chr2_2:33891703-33891722 Msa0248970:CDS 70.0%
ACCGGGACACGCCTAACCCG+AGG - chr2_2:33893059-33893078 Msa0248970:CDS 70.0%
CATGCCTGCGCTCGCGTGAG+TGG + chr2_2:33893602-33893621 None:intergenic 70.0%
ACGGCGCAGGACGTCCCGCT+TGG + chr2_2:33891170-33891189 None:intergenic 75.0%
GGGACGGGCCTAAACGGCGC+AGG + chr2_2:33891183-33891202 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 33891163 33896427 33891163 ID=Msa0248970;Name=Msa0248970
chr2_2 mRNA 33891163 33896427 33891163 ID=Msa0248970-mRNA-1;Parent=Msa0248970;Name=Msa0248970-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0.88|0.8|0.9|1|1|10|213|559
chr2_2 exon 33891163 33891729 33891163 ID=Msa0248970-mRNA-1:exon:11366;Parent=Msa0248970-mRNA-1
chr2_2 exon 33891817 33891916 33891817 ID=Msa0248970-mRNA-1:exon:11365;Parent=Msa0248970-mRNA-1
chr2_2 exon 33892577 33892702 33892577 ID=Msa0248970-mRNA-1:exon:11364;Parent=Msa0248970-mRNA-1
chr2_2 exon 33892943 33893132 33892943 ID=Msa0248970-mRNA-1:exon:11363;Parent=Msa0248970-mRNA-1
chr2_2 exon 33893382 33893612 33893382 ID=Msa0248970-mRNA-1:exon:11362;Parent=Msa0248970-mRNA-1
chr2_2 exon 33893733 33893878 33893733 ID=Msa0248970-mRNA-1:exon:11361;Parent=Msa0248970-mRNA-1
chr2_2 exon 33894022 33894205 33894022 ID=Msa0248970-mRNA-1:exon:11360;Parent=Msa0248970-mRNA-1
chr2_2 exon 33894327 33894363 33894327 ID=Msa0248970-mRNA-1:exon:11359;Parent=Msa0248970-mRNA-1
chr2_2 exon 33895087 33895262 33895087 ID=Msa0248970-mRNA-1:exon:11358;Parent=Msa0248970-mRNA-1
chr2_2 exon 33896292 33896427 33896292 ID=Msa0248970-mRNA-1:exon:11357;Parent=Msa0248970-mRNA-1
chr2_2 CDS 33896292 33896427 33896292 ID=Msa0248970-mRNA-1:cds;Parent=Msa0248970-mRNA-1
chr2_2 CDS 33895087 33895262 33895087 ID=Msa0248970-mRNA-1:cds;Parent=Msa0248970-mRNA-1
chr2_2 CDS 33894327 33894363 33894327 ID=Msa0248970-mRNA-1:cds;Parent=Msa0248970-mRNA-1
chr2_2 CDS 33894022 33894205 33894022 ID=Msa0248970-mRNA-1:cds;Parent=Msa0248970-mRNA-1
chr2_2 CDS 33893733 33893878 33893733 ID=Msa0248970-mRNA-1:cds;Parent=Msa0248970-mRNA-1
chr2_2 CDS 33893382 33893612 33893382 ID=Msa0248970-mRNA-1:cds;Parent=Msa0248970-mRNA-1
chr2_2 CDS 33892943 33893132 33892943 ID=Msa0248970-mRNA-1:cds;Parent=Msa0248970-mRNA-1
chr2_2 CDS 33892577 33892702 33892577 ID=Msa0248970-mRNA-1:cds;Parent=Msa0248970-mRNA-1
chr2_2 CDS 33891817 33891916 33891817 ID=Msa0248970-mRNA-1:cds;Parent=Msa0248970-mRNA-1
chr2_2 CDS 33891376 33891729 33891376 ID=Msa0248970-mRNA-1:cds;Parent=Msa0248970-mRNA-1
chr2_2 three_prime_UTR 33891163 33891375 33891163 ID=Msa0248970-mRNA-1:three_prime_utr;Parent=Msa0248970-mRNA-1
Gene Sequence

>Msa0248970

ATGGCCAAGCGGGACGTCCTGCGCCGTTTAGGCCCGTCCCGTCTAAGCCCGCTTAAAATGGGACAAGCCATGCCGGATCAAATTAGGCGATCGAGTCCAAAATCTCACCACACTCCATCTAATGGCAGACAAACGATGAGTGATGAAAGTGGTTATGATGAAGATGTGAAGAAAGGGAATGTTATTATTGATGGTAGTTCTGTGATTGGAAATATTGATGATGATTTTATTTGTGCAACTTTGGATTGGTGGCCTCCTCAGAAATGTGATTATGGTACATGTAGTTGGGGTCTTGCTTCTCTTCTCAATTTGGACCTCAACAACAAGATTTTCTTAAATGCAGTGAAAGCCTTTTCACCATTGAAACTGAGATTAGGTGGCAGTTTGCAAGATGAACTGGTATATGGGACTGATGATTACAACAAACCATGCACTCCTTTTGTTAGAAACACATCTGCAATGTTTGGATTCACACAAGGGTGCCTCCCAATGCCAAGATGGGATGAACTTAATCATTTCTTCCAAAAAGCAGGGGCTAAGATTATTTTTGGATTGAATGCTCTTTATGGAAAGTCGGTACATCATGGTTATACCGAAGGACCTTGGAACTACACCAATGCTGAATCGTTTATTCAATACACCGTTGGAAAGAACTACGACATTCATGGATGGGAACTTGGCAATGAATTGAGTGGGGGTGGAGTTGGAACAAGTGTCTCTGTAGATCAATATGCTTCTGATGTTATTGCTTTAAGAGACGTAGTTCACAATGCATATAAAGACGTTGAACCTAAGCCATTAGTCATTGCGCCTGGAGGTTTCTTTGATGCAACGTGGTTTAAAGATTTTATAAGCAAATCTAATAAATCTGTGGATGTGGTCACACACCACATTTATAGCCTTGGACCAGGAGTTGATACGCACCTTGTGGAAAAAATTCTGAATCCTTCCTATCTTGATAGAGACAAAACTACATTCAAAGGCCTGAAAAATGTTCTTGAAAGTACAGGAACCTCAGCAACAGCATGGGTTGGTGAGTCAGGAGGGGCTTATAACAGTGGCCATCATCTTGTATCCGATGCATTTGTGTATAGTTTCTGGTATTTGGATCAACTTGGTATGTCTGCTTCTTATGACACTAAAACTTATTGCAGACAGAGTTTGATAGGAGGAAACTATGGTTTACTAAATACCACCAATTTCCTTCCAAATCCAGACTACTATAGTGCTCTTCTTTGGCACCGACTCATGGGAAGAGGTGTACTATCAACTACCTTCTCAGGAACAAACAAGATACGAGCTTACGCGCACTGCGCAAAACAATCTAAAGGAATTACCATACTATTGATCAACCTGGACAACAGCACAACTGTCGAGGCGACATTTAGCGATAGTAAGAGTTCCTTGCATAGAAAGATGCCTTATAATTCAAAAATAATGAAACTACCACTTCAAAGTTCAATTGAAAAATCAAGAGAAGAGTACCATCTAACTCCGCAGGGTGGAAATATACATAGCCAAGTCATGTTACTGAATGGAAATGTTTTAAGTGTAAACTCAGATGGTGATATTCCTCCTTTGAAGCCTCTATATGTAAGCTCATCAAAGCCAATAAGGATTGCTCCTTTCTCCATTGTATTTTCTCATATACCTGATGCTGTTGTTCCGGCTTGCGGCTAG

Protein sequence

>Msa0248970

MAKRDVLRRLGPSRLSPLKMGQAMPDQIRRSSPKSHHTPSNGRQTMSDESGYDEDVKKGNVIIDGSSVIGNIDDDFICATLDWWPPQKCDYGTCSWGLASLLNLDLNNKIFLNAVKAFSPLKLRLGGSLQDELVYGTDDYNKPCTPFVRNTSAMFGFTQGCLPMPRWDELNHFFQKAGAKIIFGLNALYGKSVHHGYTEGPWNYTNAESFIQYTVGKNYDIHGWELGNELSGGGVGTSVSVDQYASDVIALRDVVHNAYKDVEPKPLVIAPGGFFDATWFKDFISKSNKSVDVVTHHIYSLGPGVDTHLVEKILNPSYLDRDKTTFKGLKNVLESTGTSATAWVGESGGAYNSGHHLVSDAFVYSFWYLDQLGMSASYDTKTYCRQSLIGGNYGLLNTTNFLPNPDYYSALLWHRLMGRGVLSTTFSGTNKIRAYAHCAKQSKGITILLINLDNSTTVEATFSDSKSSLHRKMPYNSKIMKLPLQSSIEKSREEYHLTPQGGNIHSQVMLLNGNVLSVNSDGDIPPLKPLYVSSSKPIRIAPFSIVFSHIPDAVVPACG*