AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1152990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1152990 MtrunA17_Chr7g0243261 98.235 170 3 0 1 170 1 170 4.18e-122 341
Msa1152990 MtrunA17_Chr4g0005561 84.118 170 27 0 1 170 1 170 1.43e-104 296
Msa1152990 MtrunA17_Chr5g0418311 50.000 180 80 2 1 170 1 180 8.94e-60 184
Msa1152990 MtrunA17_Chr4g0061181 48.276 174 86 2 1 170 1 174 3.63e-54 169
Msa1152990 MtrunA17_Chr7g0269431 41.772 79 44 2 56 133 33 110 6.83e-15 67.8
Msa1152990 MtrunA17_Chr1g0195361 28.421 95 66 2 56 149 35 128 1.80e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1152990 AT3G08890.1 79.412 170 35 0 1 170 1 170 1.32e-103 295
Msa1152990 AT3G08890.2 79.412 170 35 0 1 170 1 170 1.32e-103 295
Msa1152990 AT5G37070.1 78.235 170 37 0 1 170 1 170 5.14e-100 285
Msa1152990 AT5G01610.2 72.941 170 46 0 1 170 1 170 7.89e-96 275
Msa1152990 AT5G01610.1 72.941 170 46 0 1 170 1 170 7.89e-96 275
Msa1152990 AT2G03350.1 50.000 168 80 2 7 170 12 179 7.77e-53 166
Msa1152990 AT1G02816.1 28.696 115 79 2 57 168 35 149 1.56e-14 67.8
Msa1152990 AT4G02360.1 32.110 109 71 3 51 157 25 132 1.09e-13 65.5
Msa1152990 AT4G02370.1 30.526 95 65 1 56 149 34 128 5.87e-13 63.5

Find 54 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTCAGCAACTCTGTTAA+TGG 0.165577 7_4:+39070330 None:intergenic
CGCTTCACAACTACTGTTTC+TGG 0.191177 7_4:-39070180 Msa1152990:CDS
AGAAGAGTGGTTGGTGAATC+TGG 0.237015 7_4:-39073117 Msa1152990:five_prime_UTR
TGGCTGGTCAACAAATTAAA+AGG 0.248718 7_4:-39070894 Msa1152990:intron
TTTGAATGTTTATGATAATA+TGG 0.285580 7_4:-39069864 Msa1152990:three_prime_UTR
TGAACAAGGTTGGATCTTAC+TGG 0.286424 7_4:-39073077 Msa1152990:CDS
CATAAACATTCAAATCTAAA+AGG 0.302665 7_4:+39069873 None:intergenic
AACTACTGTTTCTGGTTACT+TGG 0.322844 7_4:-39070172 Msa1152990:CDS
AGGAAAGCTAGCTGATATAG+AGG 0.335487 7_4:-39070145 Msa1152990:CDS
CTCATAGTTTGTTGCGTCGC+GGG 0.350732 7_4:+39070281 None:intergenic
TAATTTGTTGACCAGCCATT+TGG 0.376968 7_4:+39070899 None:intergenic
GACAGAGTTGAGTTCCTTGT+TGG 0.400423 7_4:+39073041 None:intergenic
CCAGCAGTGAAGTGCAGCTT+TGG 0.409039 7_4:+39070066 None:intergenic
AAGGAAAAGGGAAGCTTATG+AGG 0.434792 7_4:-39070031 Msa1152990:CDS
CTTTGGTCCCTCGGATGTAA+TGG 0.437677 7_4:+39070083 None:intergenic
AAGGAATATGATCTACCAAT+AGG 0.438849 7_4:-39070312 Msa1152990:CDS
GTTTCTGGTTACTTGGAGAA+AGG 0.453263 7_4:-39070165 Msa1152990:CDS
GCATGAAGAAAACAAGGAAA+AGG 0.453741 7_4:-39070044 Msa1152990:CDS
AATCTAAAAGGATAACATAA+TGG 0.459053 7_4:+39069885 None:intergenic
CCAAAGCTGCACTTCACTGC+TGG 0.476094 7_4:-39070066 Msa1152990:CDS
GTAGAGAGAAGAAGAGTGGT+TGG 0.485096 7_4:-39073126 Msa1152990:five_prime_UTR
TAAAGTAATGTCTGTTCTTG+TGG 0.486882 7_4:-39069909 Msa1152990:three_prime_UTR
TCGCGGGGAAAGATTCCTAT+TGG 0.487217 7_4:+39070297 None:intergenic
ATTCCTCAAGTGTGTGAAGT+AGG 0.513172 7_4:-39070225 Msa1152990:CDS
GGTTGGTGAATCTGGGTGAA+TGG 0.514189 7_4:-39073109 Msa1152990:exon
GCTTATGAGGTTTCTAGAGA+TGG 0.516860 7_4:-39070018 Msa1152990:CDS
GAAGTGCAGCTTTGGTCCCT+CGG 0.517935 7_4:+39070074 None:intergenic
GAAGAGTGGTTGGTGAATCT+GGG 0.518190 7_4:-39073116 Msa1152990:five_prime_UTR
CATGAAGAAAACAAGGAAAA+GGG 0.522722 7_4:-39070043 Msa1152990:CDS
TTTCACCCACACCAACACTT+TGG 0.523358 7_4:+39070113 None:intergenic
GATCAGGTATTGAACAAGGT+TGG 0.526839 7_4:-39073087 Msa1152990:CDS
TGAATCTGGGTGAATGGATC+AGG 0.543188 7_4:-39073103 Msa1152990:exon
TCATAGTTTGTTGCGTCGCG+GGG 0.545453 7_4:+39070282 None:intergenic
CTGCTGGCATGAAGAAAACA+AGG 0.556882 7_4:-39070050 Msa1152990:CDS
CGAAGGAGGAACCAAATGGC+TGG 0.561493 7_4:-39070910 Msa1152990:CDS
GCATCGAAGGAGGAACCAAA+TGG 0.573017 7_4:-39070914 Msa1152990:CDS
TTTCGTAGAGAGAAGAAGAG+TGG 0.588907 7_4:-39073130 Msa1152990:five_prime_UTR
AAACTACTAGTATTAACAGC+AGG 0.592486 7_4:+39069941 None:intergenic
ACTCATAGTTTGTTGCGTCG+CGG 0.599993 7_4:+39070280 None:intergenic
TCTCTGTCAAGCAGCATCGA+AGG 0.601189 7_4:-39070927 Msa1152990:CDS
ACTCTTCTTCTCTCTACGAA+AGG 0.603991 7_4:+39073132 None:intergenic
AATAATTAAGAATAAGCCCA+TGG 0.608034 7_4:-39073241 None:intergenic
GGAAAGCTAGCTGATATAGA+GGG 0.613066 7_4:-39070144 Msa1152990:CDS
GCCATTAACAGAGTTGCTGA+AGG 0.616637 7_4:-39070331 Msa1152990:CDS
AACAAGGAACTCAACTCTGT+CGG 0.617344 7_4:-39073039 Msa1152990:CDS
TGAAGACCAAAGTGTTGGTG+TGG 0.617459 7_4:-39070119 Msa1152990:CDS
GTTCAGCAAGAAAGCCAACA+AGG 0.625594 7_4:-39073055 Msa1152990:CDS
TAGCCTACTTCACACACTTG+AGG 0.632117 7_4:+39070222 None:intergenic
GGGTATGAAGACCAAAGTGT+TGG 0.639465 7_4:-39070124 Msa1152990:CDS
CTGTCAAGCAGCATCGAAGG+AGG 0.642845 7_4:-39070924 Msa1152990:CDS
AGTTACCGCCATTACATCCG+AGG 0.662266 7_4:-39070091 Msa1152990:CDS
AATGGATCAGGTATTGAACA+AGG 0.667362 7_4:-39073091 Msa1152990:CDS
GTTACCGCCATTACATCCGA+GGG 0.676710 7_4:-39070090 Msa1152990:CDS
GAAGACCAAAGTGTTGGTGT+GGG 0.684806 7_4:-39070118 Msa1152990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATAAAAAAGAGTAAAA+GGG + chr7_4:39070120-39070139 None:intergenic 10.0%
!! AAATAATAAAAAAGAGTAAA+AGG + chr7_4:39070121-39070140 None:intergenic 10.0%
!! TAGATTATTTAATGATTATT+TGG - chr7_4:39070458-39070477 Msa1152990:intron 10.0%
!!! ATAAATAAATAAAAGTTTTG+GGG - chr7_4:39070645-39070664 Msa1152990:intron 10.0%
!! ATAATAAAAAAGAGTAAAAG+GGG + chr7_4:39070119-39070138 None:intergenic 15.0%
!!! TAAATAAATAAAAGTTTTGG+GGG - chr7_4:39070646-39070665 Msa1152990:intron 15.0%
!! ATATATTTAACATCAATCTT+GGG - chr7_4:39071292-39071311 Msa1152990:intron 15.0%
!! TAAGTATTATACTTTGATTA+AGG - chr7_4:39072298-39072317 Msa1152990:intron 15.0%
!! TTTGAATGTTTATGATAATA+TGG - chr7_4:39073221-39073240 Msa1152990:five_prime_UTR 15.0%
!! TAATAAAAAAGAGTAAAAGG+GGG + chr7_4:39070118-39070137 None:intergenic 20.0%
!! GTATTCAACTAAAAAAAAAG+AGG + chr7_4:39070166-39070185 None:intergenic 20.0%
!!! TATTTGTCGAATTTTAAATC+TGG - chr7_4:39070372-39070391 Msa1152990:intron 20.0%
!!! ATAACGATGTAAAAGTATTA+AGG - chr7_4:39071034-39071053 Msa1152990:intron 20.0%
!! ATCACTTATCTCATATATAA+AGG - chr7_4:39071074-39071093 Msa1152990:intron 20.0%
!! GATATATTTAACATCAATCT+TGG - chr7_4:39071291-39071310 Msa1152990:intron 20.0%
!!! AATTTTTCATGCTTAATATG+TGG - chr7_4:39071584-39071603 Msa1152990:intron 20.0%
!! ATTTCTTTGTACAATCTATA+CGG + chr7_4:39071721-39071740 None:intergenic 20.0%
!!! AACAACTTATTTTTGATCTA+AGG - chr7_4:39072357-39072376 Msa1152990:intron 20.0%
!!! ACAACTTATTTTTGATCTAA+GGG - chr7_4:39072358-39072377 Msa1152990:intron 20.0%
!!! ACTTATTTGAACTTATTTTC+TGG + chr7_4:39072609-39072628 None:intergenic 20.0%
!! AATCTAAAAGGATAACATAA+TGG + chr7_4:39073203-39073222 None:intergenic 20.0%
!! CATAAACATTCAAATCTAAA+AGG + chr7_4:39073215-39073234 None:intergenic 20.0%
! AATAAAAAAGAGTAAAAGGG+GGG + chr7_4:39070117-39070136 None:intergenic 25.0%
!!! TGATAATGACAATGACATTT+TGG - chr7_4:39070718-39070737 Msa1152990:intron 25.0%
! ACTCATAAAAAGATTGATCA+AGG + chr7_4:39071011-39071030 None:intergenic 25.0%
!! TTCTTTATTTAATAAGCCAG+AGG - chr7_4:39071212-39071231 Msa1152990:intron 25.0%
! ATTAAACTATGAAATACCTC+TGG + chr7_4:39071231-39071250 None:intergenic 25.0%
!!! GGTTTTAGTGAATAGAAATT+AGG - chr7_4:39071605-39071624 Msa1152990:intron 25.0%
!!! CAGATTGATTTTTTAATGCT+GGG + chr7_4:39071685-39071704 None:intergenic 25.0%
!!! TCAGATTGATTTTTTAATGC+TGG + chr7_4:39071686-39071705 None:intergenic 25.0%
! ATTTGTCCATTTATCTATAC+TGG - chr7_4:39071862-39071881 Msa1152990:intron 25.0%
! AAATGTCCAGTATAGATAAA+TGG + chr7_4:39071871-39071890 None:intergenic 25.0%
!! TTGAAACTTTTCACTTTGTA+TGG - chr7_4:39071889-39071908 Msa1152990:intron 25.0%
!! TGAAACTTTTCACTTTGTAT+GGG - chr7_4:39071890-39071909 Msa1152990:intron 25.0%
! AAAAAAGAACTAGAAAACCA+AGG + chr7_4:39071950-39071969 None:intergenic 25.0%
!!! TTGGTTTTCTAGTTCTTTTT+TGG - chr7_4:39071949-39071968 Msa1152990:intron 25.0%
! ATTTCTTTGATCTGAATATG+AGG - chr7_4:39071986-39072005 Msa1152990:intron 25.0%
! TTTCTTTGATCTGAATATGA+GGG - chr7_4:39071987-39072006 Msa1152990:intron 25.0%
! TTTATCCCATTTACTGATAA+TGG - chr7_4:39072032-39072051 Msa1152990:intron 25.0%
! GATTTCCATTATCAGTAAAT+GGG + chr7_4:39072040-39072059 None:intergenic 25.0%
! TGATTTCCATTATCAGTAAA+TGG + chr7_4:39072041-39072060 None:intergenic 25.0%
! ATGTTTATATTAACGCTCTT+TGG - chr7_4:39072126-39072145 Msa1152990:intron 25.0%
! TTAAACAGTTTATCCAAACA+GGG + chr7_4:39072324-39072343 None:intergenic 25.0%
! ATTAAACAGTTTATCCAAAC+AGG + chr7_4:39072325-39072344 None:intergenic 25.0%
! TATGTTTATGTGAGAATGAA+AGG + chr7_4:39072396-39072415 None:intergenic 25.0%
!!! ATGTCATAAGCTATTTTTGT+AGG - chr7_4:39072553-39072572 Msa1152990:intron 25.0%
!!! TGTCATAAGCTATTTTTGTA+GGG - chr7_4:39072554-39072573 Msa1152990:intron 25.0%
! CAAGTTAGAGTGTAAAATTA+GGG + chr7_4:39072645-39072664 None:intergenic 25.0%
! ACAAGTTAGAGTGTAAAATT+AGG + chr7_4:39072646-39072665 None:intergenic 25.0%
!!! TTTTACACTCTAACTTGTTA+AGG - chr7_4:39072648-39072667 Msa1152990:intron 25.0%
! CATGTTAGAGTGTAAAATTA+GGG + chr7_4:39072702-39072721 None:intergenic 25.0%
! ACATGTTAGAGTGTAAAATT+AGG + chr7_4:39072703-39072722 None:intergenic 25.0%
!! TTTTACACTCTAACATGTTA+AGG - chr7_4:39072705-39072724 Msa1152990:intron 25.0%
!!! ACTAATCTTTTTCAGACCAT+GGG + chr7_4:39069863-39069882 None:intergenic 30.0%
ATAAAAAAGAGTAAAAGGGG+GGG + chr7_4:39070116-39070135 None:intergenic 30.0%
TAAGAATCATAAGCAAGACA+TGG + chr7_4:39070207-39070226 None:intergenic 30.0%
!! CTCAGCTATCTGATTTTAAT+TGG - chr7_4:39070328-39070347 Msa1152990:CDS 30.0%
!!! AGCTATCTGATTTTAATTGG+TGG - chr7_4:39070331-39070350 Msa1152990:CDS 30.0%
!!! AATGACATTTTGGTTGTGAT+CGG - chr7_4:39070728-39070747 Msa1152990:intron 30.0%
CTGGCACATAAACATTAATT+GGG + chr7_4:39070831-39070850 None:intergenic 30.0%
!!! GCATGAATTCTAGAATGTTT+TGG - chr7_4:39070939-39070958 Msa1152990:intron 30.0%
!! ATGTAAAAGTATTAAGGTGC+TGG - chr7_4:39071040-39071059 Msa1152990:intron 30.0%
TATCAAAAAACAGGAGAACA+AGG + chr7_4:39071266-39071285 None:intergenic 30.0%
ATTTAACATCAATCTTGGGA+AGG - chr7_4:39071296-39071315 Msa1152990:intron 30.0%
! AAATATTTTGCCTCTGTTGT+AGG - chr7_4:39071489-39071508 Msa1152990:intron 30.0%
AATAGAAATTAGGAAGCCTA+AGG - chr7_4:39071615-39071634 Msa1152990:intron 30.0%
AAAGTCTCGTATTTATCCTT+AGG + chr7_4:39071634-39071653 None:intergenic 30.0%
TAAGGATAAATACGAGACTT+TGG - chr7_4:39071633-39071652 Msa1152990:intron 30.0%
TAAATGGACAAATACTTGTC+AGG + chr7_4:39071855-39071874 None:intergenic 30.0%
!! AAAATACGTTGGCTTGTTAA+TGG - chr7_4:39071913-39071932 Msa1152990:intron 30.0%
AAATCATTTGTGAGTCTTGA+GGG - chr7_4:39072055-39072074 Msa1152990:intron 30.0%
CATATCATTCTCACTTGATA+TGG - chr7_4:39072412-39072431 Msa1152990:intron 30.0%
GATAAGCAGTTATATGATAG+TGG + chr7_4:39072438-39072457 None:intergenic 30.0%
!! ATGTTAAGGTATCATTTTGC+AGG - chr7_4:39072719-39072738 Msa1152990:intron 30.0%
AAGGAATATGATCTACCAAT+AGG - chr7_4:39072773-39072792 Msa1152990:intron 30.0%
CATGAAGAAAACAAGGAAAA+GGG - chr7_4:39073042-39073061 Msa1152990:CDS 30.0%
AAACTACTAGTATTAACAGC+AGG + chr7_4:39073147-39073166 None:intergenic 30.0%
TAAAGTAATGTCTGTTCTTG+TGG - chr7_4:39073176-39073195 Msa1152990:five_prime_UTR 30.0%
!!! GACTAATCTTTTTCAGACCA+TGG + chr7_4:39069864-39069883 None:intergenic 35.0%
!! AATGGATCAGGTATTGAACA+AGG - chr7_4:39069994-39070013 Msa1152990:exon 35.0%
TAAAAAAGAGTAAAAGGGGG+GGG + chr7_4:39070115-39070134 None:intergenic 35.0%
ACACATACATGCATGTACTT+TGG - chr7_4:39070283-39070302 Msa1152990:CDS 35.0%
CACATACATGCATGTACTTT+GGG - chr7_4:39070284-39070303 Msa1152990:CDS 35.0%
ATTCTCTTCACAAAGGAAGT+CGG + chr7_4:39070399-39070418 None:intergenic 35.0%
TTGAGATCGTACAACCAAAT+TGG + chr7_4:39070428-39070447 None:intergenic 35.0%
! TGAGTCGAGATATGTTCTTT+TGG - chr7_4:39070565-39070584 Msa1152990:intron 35.0%
! GAGTCGAGATATGTTCTTTT+GGG - chr7_4:39070566-39070585 Msa1152990:intron 35.0%
CCAAGTAAGTTTCATATCCA+GGG + chr7_4:39070597-39070616 None:intergenic 35.0%
TCCAAGTAAGTTTCATATCC+AGG + chr7_4:39070598-39070617 None:intergenic 35.0%
!!! ATGACATTTTGGTTGTGATC+GGG - chr7_4:39070729-39070748 Msa1152990:intron 35.0%
TAAAGTCACATGATGCACAA+AGG + chr7_4:39070791-39070810 None:intergenic 35.0%
CCTGGCACATAAACATTAAT+TGG + chr7_4:39070832-39070851 None:intergenic 35.0%
CCAATTAATGTTTATGTGCC+AGG - chr7_4:39070829-39070848 Msa1152990:intron 35.0%
GATTGGTAGGCTTAAAAACT+TGG + chr7_4:39070858-39070877 None:intergenic 35.0%
! TTTTAAGCCTACCAATCTAG+CGG - chr7_4:39070861-39070880 Msa1152990:intron 35.0%
!! CATGTGAAGCATTGGTTTAT+CGG - chr7_4:39070890-39070909 Msa1152990:intron 35.0%
! TGGTTTGTGTATCAGTAAAG+AGG - chr7_4:39070959-39070978 Msa1152990:intron 35.0%
GGTTTGTGTATCAGTAAAGA+GGG - chr7_4:39070960-39070979 Msa1152990:intron 35.0%
GTTTGTGTATCAGTAAAGAG+GGG - chr7_4:39070961-39070980 Msa1152990:intron 35.0%
TGACATACGAGTTTACCAAT+AGG - chr7_4:39071156-39071175 Msa1152990:intron 35.0%
GGAAATCAACAAAGACCTAT+TGG + chr7_4:39071174-39071193 None:intergenic 35.0%
!!! TTCTCCTGTTTTTTGATACG+AGG - chr7_4:39071268-39071287 Msa1152990:intron 35.0%
!!! TCTCCTGTTTTTTGATACGA+GGG - chr7_4:39071269-39071288 Msa1152990:intron 35.0%
TATCCCTCGTATCAAAAAAC+AGG + chr7_4:39071275-39071294 None:intergenic 35.0%
!! AGTGGATTGATTAAATTGCG+AGG + chr7_4:39071347-39071366 None:intergenic 35.0%
CTTTGTATGGGAAAATACGT+TGG - chr7_4:39071902-39071921 Msa1152990:intron 35.0%
TAATGGCTTAACAATTGCCT+TGG - chr7_4:39071930-39071949 Msa1152990:intron 35.0%
TTTGATCTGAATATGAGGGA+AGG - chr7_4:39071991-39072010 Msa1152990:intron 35.0%
GAAATCATTTGTGAGTCTTG+AGG - chr7_4:39072054-39072073 Msa1152990:intron 35.0%
!! TAATTTGTTGACCAGCCATT+TGG + chr7_4:39072189-39072208 None:intergenic 35.0%
! TGGCTGGTCAACAAATTAAA+AGG - chr7_4:39072191-39072210 Msa1152990:intron 35.0%
! TTTTTCTGTGTTTCTCAGTC+AGG - chr7_4:39072236-39072255 Msa1152990:intron 35.0%
!! AACTACTGTTTCTGGTTACT+TGG - chr7_4:39072913-39072932 Msa1152990:intron 35.0%
GCATGAAGAAAACAAGGAAA+AGG - chr7_4:39073041-39073060 Msa1152990:CDS 35.0%
ACTCTTCTTCTCTCTACGAA+AGG + chr7_4:39069956-39069975 None:intergenic 40.0%
TTTCGTAGAGAGAAGAAGAG+TGG - chr7_4:39069955-39069974 Msa1152990:three_prime_UTR 40.0%
!! GATCAGGTATTGAACAAGGT+TGG - chr7_4:39069998-39070017 Msa1152990:CDS 40.0%
TGAACAAGGTTGGATCTTAC+TGG - chr7_4:39070008-39070027 Msa1152990:CDS 40.0%
AACAAGGAACTCAACTCTGT+CGG - chr7_4:39070046-39070065 Msa1152990:CDS 40.0%
TTCCTTTGTGAAGAGAATCC+AGG - chr7_4:39070401-39070420 Msa1152990:intron 40.0%
AAGAGAATCCAGGACCAATT+TGG - chr7_4:39070411-39070430 Msa1152990:intron 40.0%
! GTCGATTGATTTCGAATCGA+TGG - chr7_4:39070498-39070517 Msa1152990:intron 40.0%
CCCTGGATATGAAACTTACT+TGG - chr7_4:39070594-39070613 Msa1152990:intron 40.0%
TGGGGGAGAACTGTAAAATT+CGG - chr7_4:39070663-39070682 Msa1152990:intron 40.0%
TGTGCATCATGTGACTTTAG+AGG - chr7_4:39070792-39070811 Msa1152990:intron 40.0%
GGCTTAAAAACTTGGATTCC+TGG + chr7_4:39070850-39070869 None:intergenic 40.0%
ACATGTTTATGCCGCTAGAT+TGG + chr7_4:39070875-39070894 None:intergenic 40.0%
GGCATAAACATGTGAAGCAT+TGG - chr7_4:39070882-39070901 Msa1152990:intron 40.0%
GATTTCCCTTGTCGAATACT+TGG - chr7_4:39071187-39071206 Msa1152990:intron 40.0%
GAACACCAAGTATTCGACAA+GGG + chr7_4:39071195-39071214 None:intergenic 40.0%
AGAACACCAAGTATTCGACA+AGG + chr7_4:39071196-39071215 None:intergenic 40.0%
TAACATCAATCTTGGGAAGG+TGG - chr7_4:39071299-39071318 Msa1152990:intron 40.0%
GGATTGATTAAATTGCGAGG+AGG + chr7_4:39071344-39071363 None:intergenic 40.0%
TTAATCAATCCACTGCCATC+AGG - chr7_4:39071353-39071372 Msa1152990:intron 40.0%
ATGCACTACATTTAGCCTGA+TGG + chr7_4:39071371-39071390 None:intergenic 40.0%
TTGCCTCTGTTGTAGGATAT+TGG - chr7_4:39071496-39071515 Msa1152990:intron 40.0%
ACTCCAATATCCTACAACAG+AGG + chr7_4:39071502-39071521 None:intergenic 40.0%
TAAATACGAGACTTTGGCGT+TGG - chr7_4:39071639-39071658 Msa1152990:intron 40.0%
AAATACGAGACTTTGGCGTT+GGG - chr7_4:39071640-39071659 Msa1152990:intron 40.0%
ACTTTGATTAAGGCCCTGTT+TGG - chr7_4:39072308-39072327 Msa1152990:intron 40.0%
TCCTTCAGCAACTCTGTTAA+TGG + chr7_4:39072758-39072777 None:intergenic 40.0%
ATTCCTCAAGTGTGTGAAGT+AGG - chr7_4:39072860-39072879 Msa1152990:intron 40.0%
!! GTTTCTGGTTACTTGGAGAA+AGG - chr7_4:39072920-39072939 Msa1152990:intron 40.0%
AGGAAAGCTAGCTGATATAG+AGG - chr7_4:39072940-39072959 Msa1152990:intron 40.0%
GGAAAGCTAGCTGATATAGA+GGG - chr7_4:39072941-39072960 Msa1152990:intron 40.0%
AAGGAAAAGGGAAGCTTATG+AGG - chr7_4:39073054-39073073 Msa1152990:CDS 40.0%
! GCTTATGAGGTTTCTAGAGA+TGG - chr7_4:39073067-39073086 Msa1152990:CDS 40.0%
GTAGAGAGAAGAAGAGTGGT+TGG - chr7_4:39069959-39069978 Msa1152990:three_prime_UTR 45.0%
!! AGAAGAGTGGTTGGTGAATC+TGG - chr7_4:39069968-39069987 Msa1152990:three_prime_UTR 45.0%
!! GAAGAGTGGTTGGTGAATCT+GGG - chr7_4:39069969-39069988 Msa1152990:three_prime_UTR 45.0%
TGAATCTGGGTGAATGGATC+AGG - chr7_4:39069982-39070001 Msa1152990:exon 45.0%
GTTCAGCAAGAAAGCCAACA+AGG - chr7_4:39070030-39070049 Msa1152990:CDS 45.0%
GACAGAGTTGAGTTCCTTGT+TGG + chr7_4:39070047-39070066 None:intergenic 45.0%
GTCCTGGATTCTCTTCACAA+AGG + chr7_4:39070406-39070425 None:intergenic 45.0%
TCGTACAACCAAATTGGTCC+TGG + chr7_4:39070422-39070441 None:intergenic 45.0%
!!! TGTTCTTTTGGGATTCTCCC+TGG - chr7_4:39070577-39070596 Msa1152990:intron 45.0%
!!! ACATTTTGGTTGTGATCGGG+AGG - chr7_4:39070732-39070751 Msa1152990:intron 45.0%
!!! CATTTTGGTTGTGATCGGGA+GGG - chr7_4:39070733-39070752 Msa1152990:intron 45.0%
!!! ATTTTGGTTGTGATCGGGAG+GGG - chr7_4:39070734-39070753 Msa1152990:intron 45.0%
GGCGGTGTAACTAGTAAACT+AGG - chr7_4:39070757-39070776 Msa1152990:intron 45.0%
GTTTATGCCGCTAGATTGGT+AGG + chr7_4:39070871-39070890 None:intergenic 45.0%
GGTGACAGCTTGATTCCAAA+GGG + chr7_4:39070990-39071009 None:intergenic 45.0%
AGGTGACAGCTTGATTCCAA+AGG + chr7_4:39070991-39071010 None:intergenic 45.0%
TACATTTAGCCTGATGGCAG+TGG + chr7_4:39071365-39071384 None:intergenic 45.0%
GCCATTAACAGAGTTGCTGA+AGG - chr7_4:39072754-39072773 Msa1152990:intron 45.0%
!! ACTCATAGTTTGTTGCGTCG+CGG + chr7_4:39072808-39072827 None:intergenic 45.0%
TAGCCTACTTCACACACTTG+AGG + chr7_4:39072866-39072885 None:intergenic 45.0%
CGCTTCACAACTACTGTTTC+TGG - chr7_4:39072905-39072924 Msa1152990:intron 45.0%
GGGTATGAAGACCAAAGTGT+TGG - chr7_4:39072961-39072980 Msa1152990:intron 45.0%
!! TGAAGACCAAAGTGTTGGTG+TGG - chr7_4:39072966-39072985 Msa1152990:intron 45.0%
!! GAAGACCAAAGTGTTGGTGT+GGG - chr7_4:39072967-39072986 Msa1152990:intron 45.0%
TTTCACCCACACCAACACTT+TGG + chr7_4:39072975-39072994 None:intergenic 45.0%
CTGCTGGCATGAAGAAAACA+AGG - chr7_4:39073035-39073054 Msa1152990:CDS 45.0%
!! TATTTATTTATAAAAAAACA+CGG + chr7_4:39070636-39070655 None:intergenic 5.0%
!!! TTATAAATAAATAAAAGTTT+TGG - chr7_4:39070643-39070662 Msa1152990:intron 5.0%
!!! TATAAATAAATAAAAGTTTT+GGG - chr7_4:39070644-39070663 Msa1152990:intron 5.0%
!! GGTTGGTGAATCTGGGTGAA+TGG - chr7_4:39069976-39069995 Msa1152990:three_prime_UTR 50.0%
!! TTTTGGTTGTGATCGGGAGG+GGG - chr7_4:39070735-39070754 Msa1152990:intron 50.0%
AGTAAAGAGGGGCTACCCTT+TGG - chr7_4:39070972-39070991 Msa1152990:intron 50.0%
! TCTCTGTCAAGCAGCATCGA+AGG - chr7_4:39072158-39072177 Msa1152990:intron 50.0%
GCATCGAAGGAGGAACCAAA+TGG - chr7_4:39072171-39072190 Msa1152990:intron 50.0%
TCGCGGGGAAAGATTCCTAT+TGG + chr7_4:39072791-39072810 None:intergenic 50.0%
!! TCATAGTTTGTTGCGTCGCG+GGG + chr7_4:39072806-39072825 None:intergenic 50.0%
!! CTCATAGTTTGTTGCGTCGC+GGG + chr7_4:39072807-39072826 None:intergenic 50.0%
AGTTACCGCCATTACATCCG+AGG - chr7_4:39072994-39073013 Msa1152990:intron 50.0%
GTTACCGCCATTACATCCGA+GGG - chr7_4:39072995-39073014 Msa1152990:intron 50.0%
CTTTGGTCCCTCGGATGTAA+TGG + chr7_4:39073005-39073024 None:intergenic 50.0%
TTTGGTTGTGATCGGGAGGG+GGG - chr7_4:39070736-39070755 Msa1152990:intron 55.0%
! TTGGCGTTGGGCACAGGATT+AGG - chr7_4:39071652-39071671 Msa1152990:intron 55.0%
! TGGCGTTGGGCACAGGATTA+GGG - chr7_4:39071653-39071672 Msa1152990:intron 55.0%
! CTGTCAAGCAGCATCGAAGG+AGG - chr7_4:39072161-39072180 Msa1152990:intron 55.0%
CGAAGGAGGAACCAAATGGC+TGG - chr7_4:39072175-39072194 Msa1152990:intron 55.0%
TGGTCCCTCGGATGTAATGG+CGG + chr7_4:39073002-39073021 None:intergenic 55.0%
! GAAGTGCAGCTTTGGTCCCT+CGG + chr7_4:39073014-39073033 None:intergenic 55.0%
CCAGCAGTGAAGTGCAGCTT+TGG + chr7_4:39073022-39073041 None:intergenic 55.0%
CCAAAGCTGCACTTCACTGC+TGG - chr7_4:39073019-39073038 Msa1152990:intron 55.0%
! AAGGGGGGGGTGTAGCAGTA+GGG + chr7_4:39070102-39070121 None:intergenic 60.0%
! AAAGGGGGGGGTGTAGCAGT+AGG + chr7_4:39070103-39070122 None:intergenic 60.0%
! GAGACTTTGGCGTTGGGCAC+AGG - chr7_4:39071646-39071665 Msa1152990:intron 60.0%
GGTTGTGATCGGGAGGGGGG+CGG - chr7_4:39070739-39070758 Msa1152990:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 39069849 39073258 39069849 ID=Msa1152990;Name=Msa1152990
chr7_4 mRNA 39069849 39073258 39069849 ID=Msa1152990-mRNA-1;Parent=Msa1152990;Name=Msa1152990-mRNA-1;_AED=0.02;_eAED=0.02;_QI=146|1|1|1|1|1|3|147|170
chr7_4 exon 39069849 39070366 39069849 ID=Msa1152990-mRNA-1:exon:9465;Parent=Msa1152990-mRNA-1
chr7_4 exon 39070895 39070949 39070895 ID=Msa1152990-mRNA-1:exon:9464;Parent=Msa1152990-mRNA-1
chr7_4 exon 39073026 39073258 39073026 ID=Msa1152990-mRNA-1:exon:9463;Parent=Msa1152990-mRNA-1
chr7_4 five_prime_UTR 39073113 39073258 39073113 ID=Msa1152990-mRNA-1:five_prime_utr;Parent=Msa1152990-mRNA-1
chr7_4 CDS 39073026 39073112 39073026 ID=Msa1152990-mRNA-1:cds;Parent=Msa1152990-mRNA-1
chr7_4 CDS 39070895 39070949 39070895 ID=Msa1152990-mRNA-1:cds;Parent=Msa1152990-mRNA-1
chr7_4 CDS 39069996 39070366 39069996 ID=Msa1152990-mRNA-1:cds;Parent=Msa1152990-mRNA-1
chr7_4 three_prime_UTR 39069849 39069995 39069849 ID=Msa1152990-mRNA-1:three_prime_utr;Parent=Msa1152990-mRNA-1
Gene Sequence

>Msa1152990

ATGGATCAGGTATTGAACAAGGTTGGATCTTACTGGTTCAGCAAGAAAGCCAACAAGGAACTCAACTCTGTCGGTGATGATTTCAACTCTCTGTCAAGCAGCATCGAAGGAGGAACCAAATGGCTGGTCAACAAATTAAAAGGAAAGATGCAAAAGCCATTAACAGAGTTGCTGAAGGAATATGATCTACCAATAGGAATCTTTCCCCGCGACGCAACAAACTATGAGTTCAATGAAGAAACAAGAAAGCTTGTTGTTTACATTCCTCAAGTGTGTGAAGTAGGCTACAGAGATTCATCAGTCTTGCGCTTCACAACTACTGTTTCTGGTTACTTGGAGAAAGGAAAGCTAGCTGATATAGAGGGTATGAAGACCAAAGTGTTGGTGTGGGTGAAAGTTACCGCCATTACATCCGAGGGACCAAAGCTGCACTTCACTGCTGGCATGAAGAAAACAAGGAAAAGGGAAGCTTATGAGGTTTCTAGAGATGGTGTAATTATAGATAAATTCTAA

Protein sequence

>Msa1152990

MDQVLNKVGSYWFSKKANKELNSVGDDFNSLSSSIEGGTKWLVNKLKGKMQKPLTELLKEYDLPIGIFPRDATNYEFNEETRKLVVYIPQVCEVGYRDSSVLRFTTTVSGYLEKGKLADIEGMKTKVLVWVKVTAITSEGPKLHFTAGMKKTRKREAYEVSRDGVIIDKF*