Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827370 | XP_024641885.1 | 99.379 | 322 | 0 | 1 | 1 | 322 | 1 | 320 | 0.0 | 647 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827370 | sp|Q9SZ96|URGT5_ARATH | 83.438 | 320 | 53 | 0 | 1 | 320 | 1 | 320 | 0.0 | 570 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827370 | G7IBV3 | 99.379 | 322 | 0 | 1 | 1 | 322 | 1 | 320 | 0.0 | 647 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0630440 | Msa0827370 | 0.855049 | 8.186275e-62 | -8.615850e-47 |
| Msa0689830 | Msa0827370 | 0.843755 | 1.152657e-58 | -8.615850e-47 |
| Msa0719270 | Msa0827370 | 0.829755 | 4.310386e-55 | -8.615850e-47 |
| Msa0799450 | Msa0827370 | 0.837148 | 6.165830e-57 | -8.615850e-47 |
| Msa0827370 | Msa0837710 | 0.820002 | 8.633749e-53 | -8.615850e-47 |
| Msa0827370 | Msa0840520 | 0.830418 | 2.970398e-55 | -8.615850e-47 |
| Msa0827370 | Msa0930770 | 0.812792 | 3.547574e-51 | -8.615850e-47 |
| Msa0827370 | Msa1124210 | 0.838306 | 3.109514e-57 | -8.615850e-47 |
| Msa0827370 | Msa1155100 | 0.813197 | 2.890858e-51 | -8.615850e-47 |
| Msa0827370 | Msa1339200 | 0.810330 | 1.216473e-50 | -8.615850e-47 |
| Msa0827370 | Msa1406090 | 0.982762 | 6.206079e-156 | -8.615850e-47 |
| Msa0827370 | Msa1436620 | 0.824368 | 8.383289e-54 | -8.615850e-47 |
| Msa0195230 | Msa0827370 | 0.816213 | 6.209983e-52 | -8.615850e-47 |
| Msa0195260 | Msa0827370 | 0.808433 | 3.105028e-50 | -8.615850e-47 |
| Msa0368640 | Msa0827370 | 0.801369 | 9.303874e-49 | -8.615850e-47 |
| Msa0413170 | Msa0827370 | 0.807231 | 5.592072e-50 | -8.615850e-47 |
| Msa0427420 | Msa0827370 | 0.812262 | 4.632807e-51 | -8.615850e-47 |
| Msa0427480 | Msa0827370 | 0.810738 | 9.930048e-51 | -8.615850e-47 |
| Msa0240540 | Msa0827370 | 0.801314 | 9.544931e-49 | -8.615850e-47 |
| Msa0276850 | Msa0827370 | 0.803360 | 3.618616e-49 | -8.615850e-47 |
| Msa0276860 | Msa0827370 | 0.809455 | 1.875872e-50 | -8.615850e-47 |
| Msa0279000 | Msa0827370 | 0.810540 | 1.095748e-50 | -8.615850e-47 |
| Msa0521530 | Msa0827370 | 0.802626 | 5.131490e-49 | -8.615850e-47 |
| Msa0567610 | Msa0827370 | 0.801903 | 7.227760e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827370 | MtrunA17_Chr1g0201531 | 99.379 | 322 | 0 | 1 | 1 | 322 | 1 | 320 | 0.0 | 647 |
| Msa0827370 | MtrunA17_Chr3g0129401 | 78.816 | 321 | 68 | 0 | 1 | 321 | 1 | 321 | 0.0 | 535 |
| Msa0827370 | MtrunA17_Chr8g0383381 | 73.765 | 324 | 82 | 1 | 1 | 321 | 1 | 324 | 0.0 | 503 |
| Msa0827370 | MtrunA17_Chr1g0157501 | 53.571 | 308 | 132 | 4 | 17 | 319 | 15 | 316 | 2.90e-94 | 283 |
| Msa0827370 | MtrunA17_Chr5g0393381 | 50.313 | 320 | 153 | 5 | 8 | 322 | 7 | 325 | 2.21e-92 | 279 |
| Msa0827370 | MtrunA17_Chr6g0467391 | 37.582 | 306 | 190 | 1 | 16 | 321 | 13 | 317 | 3.73e-61 | 197 |
| Msa0827370 | MtrunA17_Chr6g0467371 | 37.582 | 306 | 190 | 1 | 16 | 321 | 13 | 317 | 3.73e-61 | 197 |
| Msa0827370 | MtrunA17_Chr2g0326791 | 38.095 | 294 | 181 | 1 | 16 | 309 | 13 | 305 | 1.12e-60 | 197 |
| Msa0827370 | MtrunA17_Chr4g0028931 | 36.860 | 293 | 184 | 1 | 16 | 308 | 13 | 304 | 4.61e-57 | 188 |
| Msa0827370 | MtrunA17_Chr3g0128951 | 37.218 | 266 | 166 | 1 | 32 | 297 | 29 | 293 | 2.20e-52 | 176 |
| Msa0827370 | MtrunA17_Chr3g0128961 | 33.651 | 315 | 183 | 3 | 32 | 321 | 29 | 342 | 1.17e-49 | 169 |
| Msa0827370 | MtrunA17_Chr2g0298931 | 27.329 | 322 | 222 | 4 | 4 | 318 | 45 | 361 | 4.93e-26 | 106 |
| Msa0827370 | MtrunA17_Chr5g0446851 | 27.576 | 330 | 216 | 6 | 4 | 320 | 46 | 365 | 5.18e-25 | 103 |
| Msa0827370 | MtrunA17_Chr3g0114581 | 28.037 | 321 | 199 | 9 | 18 | 321 | 23 | 328 | 1.24e-16 | 79.3 |
| Msa0827370 | MtrunA17_Chr1g0160071 | 27.692 | 325 | 196 | 11 | 18 | 320 | 22 | 329 | 3.55e-16 | 78.2 |
| Msa0827370 | MtrunA17_Chr3g0139091 | 25.784 | 287 | 197 | 8 | 23 | 300 | 24 | 303 | 5.46e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827370 | AT4G09810.1 | 83.438 | 320 | 53 | 0 | 1 | 320 | 1 | 320 | 0.0 | 570 |
| Msa0827370 | AT1G34020.2 | 84.688 | 320 | 49 | 0 | 1 | 320 | 1 | 320 | 0.0 | 548 |
| Msa0827370 | AT1G34020.1 | 84.688 | 320 | 49 | 0 | 1 | 320 | 1 | 320 | 0.0 | 548 |
| Msa0827370 | AT1G34020.3 | 84.688 | 320 | 49 | 0 | 1 | 320 | 1 | 320 | 0.0 | 548 |
| Msa0827370 | AT4G39390.1 | 78.056 | 319 | 70 | 0 | 2 | 320 | 7 | 325 | 0.0 | 505 |
| Msa0827370 | AT4G39390.2 | 78.056 | 319 | 70 | 0 | 2 | 320 | 7 | 325 | 0.0 | 505 |
| Msa0827370 | AT4G39390.3 | 78.056 | 319 | 70 | 0 | 2 | 320 | 3 | 321 | 0.0 | 504 |
| Msa0827370 | AT4G09810.2 | 83.333 | 264 | 44 | 0 | 58 | 321 | 1 | 264 | 5.03e-170 | 473 |
| Msa0827370 | AT4G09810.3 | 84.889 | 225 | 34 | 0 | 1 | 225 | 1 | 225 | 1.03e-143 | 405 |
| Msa0827370 | AT5G42420.1 | 51.342 | 298 | 142 | 2 | 2 | 297 | 3 | 299 | 8.11e-98 | 293 |
| Msa0827370 | AT1G21070.1 | 50.779 | 321 | 152 | 4 | 1 | 318 | 1 | 318 | 6.34e-97 | 290 |
| Msa0827370 | AT1G76670.2 | 51.746 | 315 | 139 | 4 | 6 | 308 | 5 | 318 | 1.25e-95 | 287 |
| Msa0827370 | AT1G76670.1 | 51.746 | 315 | 139 | 4 | 6 | 308 | 5 | 318 | 1.25e-95 | 287 |
| Msa0827370 | AT1G06890.2 | 37.415 | 294 | 179 | 3 | 32 | 322 | 29 | 320 | 1.05e-56 | 187 |
| Msa0827370 | AT1G06890.1 | 37.415 | 294 | 179 | 3 | 32 | 322 | 29 | 320 | 1.05e-56 | 187 |
| Msa0827370 | AT1G06890.3 | 37.415 | 294 | 179 | 3 | 32 | 322 | 29 | 320 | 1.36e-56 | 187 |
| Msa0827370 | AT1G06890.4 | 37.415 | 294 | 179 | 3 | 32 | 322 | 29 | 320 | 1.58e-56 | 187 |
| Msa0827370 | AT2G30460.1 | 39.474 | 266 | 160 | 1 | 32 | 297 | 29 | 293 | 6.32e-56 | 185 |
| Msa0827370 | AT2G30460.2 | 39.474 | 266 | 160 | 1 | 32 | 297 | 29 | 293 | 6.32e-56 | 185 |
| Msa0827370 | AT2G28315.1 | 35.220 | 318 | 193 | 3 | 17 | 322 | 14 | 330 | 7.80e-55 | 182 |
| Msa0827370 | AT2G28315.2 | 35.932 | 295 | 188 | 1 | 17 | 311 | 14 | 307 | 1.71e-54 | 181 |
| Msa0827370 | AT2G30460.3 | 38.583 | 254 | 155 | 1 | 44 | 297 | 20 | 272 | 1.56e-50 | 171 |
| Msa0827370 | AT2G30460.6 | 38.583 | 254 | 155 | 1 | 44 | 297 | 20 | 272 | 1.56e-50 | 171 |
| Msa0827370 | AT2G30460.5 | 38.583 | 254 | 155 | 1 | 44 | 297 | 20 | 272 | 1.56e-50 | 171 |
| Msa0827370 | AT5G42420.2 | 51.240 | 121 | 58 | 1 | 177 | 297 | 113 | 232 | 4.73e-35 | 129 |
| Msa0827370 | AT5G42420.2 | 48.598 | 107 | 53 | 1 | 2 | 106 | 3 | 109 | 1.87e-24 | 100 |
| Msa0827370 | AT2G30460.4 | 39.583 | 192 | 116 | 0 | 32 | 223 | 29 | 220 | 5.72e-34 | 127 |
| Msa0827370 | AT5G55950.4 | 31.206 | 282 | 185 | 4 | 20 | 297 | 3 | 279 | 1.03e-27 | 110 |
| Msa0827370 | AT5G55950.1 | 31.206 | 282 | 185 | 4 | 20 | 297 | 63 | 339 | 1.80e-27 | 111 |
| Msa0827370 | AT5G55950.3 | 29.520 | 271 | 172 | 4 | 36 | 297 | 1 | 261 | 7.89e-22 | 94.4 |
| Msa0827370 | AT5G55950.2 | 31.651 | 218 | 141 | 3 | 20 | 233 | 63 | 276 | 4.42e-21 | 92.0 |
| Msa0827370 | AT5G57100.1 | 24.834 | 302 | 214 | 5 | 3 | 297 | 51 | 346 | 4.48e-19 | 87.4 |
| Msa0827370 | AT5G57100.2 | 28.866 | 194 | 132 | 2 | 20 | 208 | 70 | 262 | 8.38e-16 | 77.0 |
| Msa0827370 | AT1G77610.1 | 26.935 | 323 | 199 | 10 | 18 | 320 | 17 | 322 | 4.79e-14 | 72.4 |
| Msa0827370 | AT5G57100.3 | 30.120 | 166 | 108 | 3 | 3 | 161 | 51 | 215 | 3.06e-13 | 69.3 |
| Msa0827370 | AT1G21870.1 | 28.173 | 323 | 195 | 14 | 18 | 320 | 23 | 328 | 3.11e-13 | 70.1 |
Find 104 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAATCTTCATGTAGTTAT+AGG | 0.189055 | 5_3:+68536994 | Msa0827370:CDS |
| GAGCATAGGTATTGTTCTTT+TGG | 0.204855 | 5_3:+68534895 | Msa0827370:CDS |
| ACTAAGTTCTTTCAACCTTT+TGG | 0.208492 | 5_3:+68536155 | Msa0827370:CDS |
| GGCTGGATCACTATTGTTAT+TGG | 0.217609 | 5_3:+68536197 | Msa0827370:CDS |
| TTAAATTTGATTTCTTGTTT+TGG | 0.254326 | 5_3:+68537278 | Msa0827370:three_prime_UTR |
| TTTGCTAACTTCTCTATTGT+TGG | 0.273526 | 5_3:+68534664 | Msa0827370:CDS |
| TATTTGAAATTAAACCTTAC+TGG | 0.279006 | 5_3:+68537224 | Msa0827370:three_prime_UTR |
| ATCTGCCAATGCAGATAAAT+TGG | 0.283951 | 5_3:-68536885 | None:intergenic |
| TTCTTCTCAGCTTTGCTTGA+AGG | 0.285443 | 5_3:-68534286 | None:intergenic |
| TGGGCCCTCTTCTAGACTAT+TGG | 0.285839 | 5_3:+68536217 | Msa0827370:CDS |
| GGTGGTTATGGCTTCAGTTT+TGG | 0.294456 | 5_3:+68534388 | Msa0827370:CDS |
| CATTGTAAACAAAGCTTTGA+TGG | 0.302927 | 5_3:+68534366 | Msa0827370:CDS |
| ACTAGCTGATATCTCCTTAT+AGG | 0.304873 | 5_3:+68537303 | Msa0827370:three_prime_UTR |
| TACAGGGATCATACTCAATT+TGG | 0.310691 | 5_3:-68534816 | None:intergenic |
| CTGCTTGTTGGAAGTTTGTT+TGG | 0.312293 | 5_3:+68534841 | Msa0827370:CDS |
| TTCCAGGGAGCATACCTATA+AGG | 0.348467 | 5_3:-68537317 | None:intergenic |
| CTATCATGACGCTCGTACTA+CGG | 0.348850 | 5_3:+68534581 | Msa0827370:CDS |
| AAAGCTTTGATGGGTGGTTA+TGG | 0.350738 | 5_3:+68534376 | Msa0827370:CDS |
| TGTACTCCACACTGCTATAA+AGG | 0.354411 | 5_3:-68534975 | None:intergenic |
| TTAATCTTCATGTAGTTATA+GGG | 0.355141 | 5_3:+68536995 | Msa0827370:CDS |
| TCTTCATATGTCCAAGTACT+TGG | 0.370729 | 5_3:-68536924 | None:intergenic |
| ACAGCAGGATAGTTGATTCT+AGG | 0.379481 | 5_3:+68537187 | Msa0827370:three_prime_UTR |
| GCTGGATCACTATTGTTATT+GGG | 0.390290 | 5_3:+68536198 | Msa0827370:CDS |
| AGATTGTTGTTAATTGTGTT+TGG | 0.399409 | 5_3:+68533288 | Msa0827370:five_prime_UTR |
| GAGATCCGTGTGAAGTTTGA+AGG | 0.406091 | 5_3:+68534245 | Msa0827370:five_prime_UTR |
| ACTTCCAACAAGCAGGATAC+AGG | 0.412593 | 5_3:-68534833 | None:intergenic |
| TGAAAGTGGAGGGAATGTTA+TGG | 0.419562 | 5_3:+68534209 | Msa0827370:five_prime_UTR |
| AAAGAAAGGTGGGGTGTGTT+GGG | 0.420540 | 5_3:-68533400 | None:intergenic |
| TAAAATAATTAAAACCAGTA+AGG | 0.425675 | 5_3:-68537238 | None:intergenic |
| AAAAGAAAGGTGGGGTGTGT+TGG | 0.426524 | 5_3:-68533401 | None:intergenic |
| GCTGTATCTTTCCAAGTACT+TGG | 0.427096 | 5_3:+68536913 | Msa0827370:CDS |
| GCCTGCAGCTACAACGTTAA+CGG | 0.427426 | 5_3:+68534537 | Msa0827370:intron |
| GATCCCTGTATCCTGCTTGT+TGG | 0.429832 | 5_3:+68534829 | Msa0827370:CDS |
| GACGCTCGTACTACGGGTGC+TGG | 0.431582 | 5_3:+68534588 | Msa0827370:CDS |
| CTCAGCCAATTTATCTGCAT+TGG | 0.439399 | 5_3:+68536880 | Msa0827370:CDS |
| GATTGTTGTTAATTGTGTTT+GGG | 0.443324 | 5_3:+68533289 | Msa0827370:five_prime_UTR |
| TTCAATGTTGTCACATCTGT+TGG | 0.444323 | 5_3:+68534337 | Msa0827370:CDS |
| TGAGGTTGAAAGGAGTTGTA+TGG | 0.444590 | 5_3:-68533367 | None:intergenic |
| CATCCATGCCGCAGCATCTA+CGG | 0.452040 | 5_3:-68534314 | None:intergenic |
| ACAGTATTCACTCATTATGA+TGG | 0.453531 | 5_3:+68537136 | Msa0827370:three_prime_UTR |
| TTGCTTATTTGCTTTGCAGC+AGG | 0.454252 | 5_3:-68533330 | None:intergenic |
| TTCAAGCAAAGCTGAGAAGA+AGG | 0.460573 | 5_3:+68534288 | Msa0827370:CDS |
| TATCATGACGCTCGTACTAC+GGG | 0.465542 | 5_3:+68534582 | Msa0827370:CDS |
| AGTTTAATGTGGAACTCAGT+TGG | 0.467237 | 5_3:+68534697 | Msa0827370:CDS |
| TTGCAAAAGTTGAGTACAGC+AGG | 0.496842 | 5_3:+68537172 | Msa0827370:three_prime_UTR |
| CCTGCAGCTACAACGTTAAC+GGG | 0.498929 | 5_3:+68534538 | Msa0827370:intron |
| GGGATGATAATAGCTGTTGT+TGG | 0.500626 | 5_3:+68537015 | Msa0827370:CDS |
| CTCCAACGTTCCTTTCCACC+CGG | 0.506064 | 5_3:-68537069 | None:intergenic |
| TTCTTACGATGCAGCCTCCT+CGG | 0.506728 | 5_3:+68536266 | Msa0827370:CDS |
| CAACTGCAATAGTGCATGAC+AGG | 0.512316 | 5_3:-68536849 | None:intergenic |
| CTCATCAAAGCCGGGTGGAA+AGG | 0.518918 | 5_3:+68537059 | Msa0827370:CDS |
| GTCAACCAATAGTCTAGAAG+AGG | 0.519084 | 5_3:-68536222 | None:intergenic |
| TGGTAATGCCTCATCAAAGC+CGG | 0.520386 | 5_3:+68537050 | Msa0827370:CDS |
| CATACAGCACCCGCACAGGC+TGG | 0.523624 | 5_3:+68536180 | Msa0827370:CDS |
| ACTCCTGCATTATTTGAAAG+TGG | 0.523920 | 5_3:+68534195 | Msa0827370:five_prime_UTR |
| CCTCCACTTTCAAATAATGC+AGG | 0.524868 | 5_3:-68534198 | None:intergenic |
| TATTTGCTTTGCAGCAGGAG+TGG | 0.527662 | 5_3:-68533325 | None:intergenic |
| CTTTCCACCCGGCTTTGATG+AGG | 0.529809 | 5_3:-68537058 | None:intergenic |
| AAGAATGATCTGAGGTTGAA+AGG | 0.535238 | 5_3:-68533377 | None:intergenic |
| ATTGTAAACAAAGCTTTGAT+GGG | 0.537492 | 5_3:+68534367 | Msa0827370:CDS |
| CTGTCATGCACTATTGCAGT+TGG | 0.539337 | 5_3:+68536850 | Msa0827370:CDS |
| CTCCTTATAGGTATGCTCCC+TGG | 0.542778 | 5_3:+68537315 | Msa0827370:three_prime_UTR |
| CAGCCGTAGATGCTGCGGCA+TGG | 0.544538 | 5_3:+68534311 | Msa0827370:CDS |
| AAAAGGAAGCTAACCGTGGA+TGG | 0.545489 | 5_3:-68533436 | None:intergenic |
| CTGCATTATTTGAAAGTGGA+GGG | 0.545733 | 5_3:+68534199 | Msa0827370:five_prime_UTR |
| AATTTAAAGAATTACAAATG+AGG | 0.546496 | 5_3:-68537262 | None:intergenic |
| AATAGTGATCCAGCCTGTGC+GGG | 0.549143 | 5_3:-68536189 | None:intergenic |
| TGTCATGCACTATTGCAGTT+GGG | 0.557390 | 5_3:+68536851 | Msa0827370:CDS |
| CGTGAAAGAATCCGAAAACA+TGG | 0.562020 | 5_3:+68533118 | Msa0827370:five_prime_UTR |
| GCAGATAAATTGGCTGAGGT+TGG | 0.563030 | 5_3:-68536875 | None:intergenic |
| TGTGAATAGAAAAGAAAGGT+GGG | 0.563376 | 5_3:-68533410 | None:intergenic |
| GACGTAAGTGTAAACATGAA+AGG | 0.563776 | 5_3:+68534941 | Msa0827370:CDS |
| TCTATTCACACCTCCATCCA+CGG | 0.564926 | 5_3:+68533423 | Msa0827370:five_prime_UTR |
| GTAAACAAAGCTTTGATGGG+TGG | 0.567414 | 5_3:+68534370 | Msa0827370:CDS |
| CGGGTGCTGTATGTCCCAAA+AGG | 0.569410 | 5_3:-68536170 | None:intergenic |
| AGTATGTTCATTATCTTCAA+CGG | 0.576478 | 5_3:+68536124 | Msa0827370:intron |
| GGTAATGCCTCATCAAAGCC+GGG | 0.576676 | 5_3:+68537051 | Msa0827370:CDS |
| TCGGACAATGGAAGATGAGA+TGG | 0.578480 | 5_3:-68534622 | None:intergenic |
| CCTGCATTATTTGAAAGTGG+AGG | 0.582054 | 5_3:+68534198 | Msa0827370:five_prime_UTR |
| CTTCCAACAAGCAGGATACA+GGG | 0.585722 | 5_3:-68534832 | None:intergenic |
| TTAATCCTTCAAACTTCACA+CGG | 0.586224 | 5_3:-68534250 | None:intergenic |
| GGGACATACAGCACCCGCAC+AGG | 0.586372 | 5_3:+68536176 | Msa0827370:CDS |
| GAATGAATGTCAGTTTAATG+TGG | 0.588693 | 5_3:+68534686 | Msa0827370:CDS |
| ACAATGGAAGATGAGATGGC+TGG | 0.591393 | 5_3:-68534618 | None:intergenic |
| CAAACAAACTTCCAACAAGC+AGG | 0.593504 | 5_3:-68534840 | None:intergenic |
| GTGTGAATAGAAAAGAAAGG+TGG | 0.595894 | 5_3:-68533411 | None:intergenic |
| ACGCTCGTACTACGGGTGCT+GGG | 0.598648 | 5_3:+68534589 | Msa0827370:CDS |
| CAATAGTGATCCAGCCTGTG+CGG | 0.599047 | 5_3:-68536190 | None:intergenic |
| AAGTGGAGGGAATGTTATGG+AGG | 0.604217 | 5_3:+68534212 | Msa0827370:five_prime_UTR |
| GTTGTTGGAATGATGTGGTA+TGG | 0.618331 | 5_3:+68537030 | Msa0827370:CDS |
| AGAGACACAAAACTGAGCAT+AGG | 0.624573 | 5_3:+68534881 | Msa0827370:CDS |
| GAAGGCAGCCGTAGATGCTG+CGG | 0.628788 | 5_3:+68534306 | Msa0827370:CDS |
| GAGGTGTGAATAGAAAAGAA+AGG | 0.629980 | 5_3:-68533414 | None:intergenic |
| AGCCGGGTGGAAAGGAACGT+TGG | 0.631506 | 5_3:+68537067 | Msa0827370:CDS |
| TCAACCAATAGTCTAGAAGA+GGG | 0.636120 | 5_3:-68536221 | None:intergenic |
| CAATGCAGATAAATTGGCTG+AGG | 0.640425 | 5_3:-68536879 | None:intergenic |
| CTACCAGCAAAACAGAAAGT+CGG | 0.648557 | 5_3:+68537103 | Msa0827370:CDS |
| AGGAAGCTAACCGTGGATGG+AGG | 0.649164 | 5_3:-68533433 | None:intergenic |
| TTGCTGCCTTTATAGCAGTG+TGG | 0.662093 | 5_3:+68534969 | Msa0827370:CDS |
| TTATCCAGAACTTACCGAGG+AGG | 0.697126 | 5_3:-68536280 | None:intergenic |
| GTGTTGGGAAGAATGATCTG+AGG | 0.705801 | 5_3:-68533385 | None:intergenic |
| GTGAATAGAAAAGAAAGGTG+GGG | 0.716134 | 5_3:-68533409 | None:intergenic |
| AATGCCTCATCAAAGCCGGG+TGG | 0.721446 | 5_3:+68537054 | Msa0827370:CDS |
| TAGCTGTTGTTGGAATGATG+TGG | 0.725934 | 5_3:+68537025 | Msa0827370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATTTGAATTTTTGAAT+TGG | + | chr5_3:68533784-68533803 | Msa0827370:intron | 10.0% |
| !! | AAAAGTAAATAAACAATTTA+AGG | - | chr5_3:68535456-68535475 | None:intergenic | 10.0% |
| !! | AATATAAATTTGATATAACA+AGG | - | chr5_3:68536423-68536442 | None:intergenic | 10.0% |
| !!! | TTTTATTATATTTTGAACAT+TGG | + | chr5_3:68536584-68536603 | Msa0827370:intron | 10.0% |
| !!! | TTAGTTAACTACTTTATTTT+CGG | + | chr5_3:68533141-68533160 | Msa0827370:five_prime_UTR | 15.0% |
| !! | TAAAAGAAAATCATACTTAA+AGG | - | chr5_3:68534515-68534534 | None:intergenic | 15.0% |
| !!! | TTTTAGACTTTCAAATTTAT+CGG | + | chr5_3:68535476-68535495 | Msa0827370:intron | 15.0% |
| !! | AAATTAAACATATAGATACT+TGG | + | chr5_3:68536324-68536343 | Msa0827370:intron | 15.0% |
| !!! | ACAATACTTGTTTTAATAAT+GGG | + | chr5_3:68536946-68536965 | Msa0827370:CDS | 15.0% |
| !! | TAAAATAATTAAAACCAGTA+AGG | - | chr5_3:68537241-68537260 | None:intergenic | 15.0% |
| !! | AATTTAAAGAATTACAAATG+AGG | - | chr5_3:68537265-68537284 | None:intergenic | 15.0% |
| !!! | TTAAATTTGATTTCTTGTTT+TGG | + | chr5_3:68537278-68537297 | Msa0827370:three_prime_UTR | 15.0% |
| !!! | AAATAAATTCATTTTGATCA+TGG | - | chr5_3:68537357-68537376 | None:intergenic | 15.0% |
| !! | TAAGAAAAATGAAAGAGAAA+AGG | - | chr5_3:68533456-68533475 | None:intergenic | 20.0% |
| !! | ATCAATCCAAAAAATGAAAA+AGG | - | chr5_3:68533519-68533538 | None:intergenic | 20.0% |
| !!! | TTGAATTTTTGAATTGGTTT+AGG | + | chr5_3:68533790-68533809 | Msa0827370:intron | 20.0% |
| !! | AAAAACTATTGTATTCAGAT+AGG | - | chr5_3:68534048-68534067 | None:intergenic | 20.0% |
| !! | CAGAAATATCATTAAGAAAT+TGG | - | chr5_3:68534426-68534445 | None:intergenic | 20.0% |
| !!! | AGTTTTATGATATATCAACT+GGG | - | chr5_3:68534471-68534490 | None:intergenic | 20.0% |
| !!! | AAGTTTTATGATATATCAAC+TGG | - | chr5_3:68534472-68534491 | None:intergenic | 20.0% |
| !!! | GAAAACAAATTTTAGAAGTT+CGG | - | chr5_3:68534644-68534663 | None:intergenic | 20.0% |
| !!! | AAAGAAACAAATTTAACTTC+TGG | - | chr5_3:68534777-68534796 | None:intergenic | 20.0% |
| !!! | TGTATTTGTTTCTTAGAATT+TGG | + | chr5_3:68535051-68535070 | Msa0827370:intron | 20.0% |
| !!! | GTATTTGTTTCTTAGAATTT+GGG | + | chr5_3:68535052-68535071 | Msa0827370:intron | 20.0% |
| !! | TTTAGACTTTCAAATTTATC+GGG | + | chr5_3:68535477-68535496 | Msa0827370:intron | 20.0% |
| !!! | TATATAAATTTAAAGCAAGC+AGG | - | chr5_3:68536521-68536540 | None:intergenic | 20.0% |
| !!! | ATTATATTTTGAACATTGGT+AGG | + | chr5_3:68536588-68536607 | Msa0827370:intron | 20.0% |
| !! | TATAGAACATAATTGAGAAT+TGG | + | chr5_3:68536740-68536759 | Msa0827370:intron | 20.0% |
| !!! | GACAATACTTGTTTTAATAA+TGG | + | chr5_3:68536945-68536964 | Msa0827370:CDS | 20.0% |
| !! | TTAATCTTCATGTAGTTATA+GGG | + | chr5_3:68536995-68537014 | Msa0827370:CDS | 20.0% |
| !!! | TATTTGAAATTAAACCTTAC+TGG | + | chr5_3:68537224-68537243 | Msa0827370:three_prime_UTR | 20.0% |
| !! | TAGTTAACTAACCATGTTTT+CGG | - | chr5_3:68533132-68533151 | None:intergenic | 25.0% |
| !! | AGATTGTTGTTAATTGTGTT+TGG | + | chr5_3:68533288-68533307 | Msa0827370:five_prime_UTR | 25.0% |
| !! | GATTGTTGTTAATTGTGTTT+GGG | + | chr5_3:68533289-68533308 | Msa0827370:five_prime_UTR | 25.0% |
| !!! | ACTTCTCCTTTTTCATTTTT+TGG | + | chr5_3:68533510-68533529 | Msa0827370:intron | 25.0% |
| !! | TGTTTTTCTCTTCTTGAAAT+GGG | - | chr5_3:68533561-68533580 | None:intergenic | 25.0% |
| !!! | TTGTTTTTCTCTTCTTGAAA+TGG | - | chr5_3:68533562-68533581 | None:intergenic | 25.0% |
| ! | CAAGAAGAGAAAAACAAAAA+TGG | + | chr5_3:68533565-68533584 | Msa0827370:intron | 25.0% |
| ! | TTGAAGGATTAAAAAGAACA+TGG | + | chr5_3:68534261-68534280 | Msa0827370:exon | 25.0% |
| !! | ATTGTAAACAAAGCTTTGAT+GGG | + | chr5_3:68534367-68534386 | Msa0827370:CDS | 25.0% |
| ! | AAGAAAATCATACTTAAAGG+AGG | - | chr5_3:68534512-68534531 | None:intergenic | 25.0% |
| !!! | TTTGTTTCTTTTTTGACCAT+TGG | + | chr5_3:68534786-68534805 | Msa0827370:intron | 25.0% |
| !! | AAAATGAAGGGTATACTAAA+TGG | - | chr5_3:68535171-68535190 | None:intergenic | 25.0% |
| !! | ACGTGATTCAATTTTTAATG+CGG | - | chr5_3:68535246-68535265 | None:intergenic | 25.0% |
| ! | GGATTAAAAATTAGATGCTT+AGG | - | chr5_3:68535576-68535595 | None:intergenic | 25.0% |
| !! | AAGCATCTAATTTTTAATCC+AGG | + | chr5_3:68535576-68535595 | Msa0827370:intron | 25.0% |
| ! | ATGGCAGTTAAAATTCTAAA+TGG | - | chr5_3:68535602-68535621 | None:intergenic | 25.0% |
| ! | AGAAATCTATAGATGGAATT+GGG | + | chr5_3:68535627-68535646 | Msa0827370:intron | 25.0% |
| ! | TGATACTATCTTAGAATTTG+AGG | + | chr5_3:68535786-68535805 | Msa0827370:intron | 25.0% |
| ! | GATACTATCTTAGAATTTGA+GGG | + | chr5_3:68535787-68535806 | Msa0827370:intron | 25.0% |
| ! | AGTATGTTCATTATCTTCAA+CGG | + | chr5_3:68536124-68536143 | Msa0827370:intron | 25.0% |
| ! | AATTATCTACACATATTGGA+AGG | - | chr5_3:68536453-68536472 | None:intergenic | 25.0% |
| ! | ATGCAATTATCTACACATAT+TGG | - | chr5_3:68536457-68536476 | None:intergenic | 25.0% |
| ! | AATCTACTTATCAACATACA+TGG | + | chr5_3:68536540-68536559 | Msa0827370:intron | 25.0% |
| ! | GCATATAATGAGATTATGAA+CGG | - | chr5_3:68536648-68536667 | None:intergenic | 25.0% |
| ! | CATAATCTCATTATATGCTT+AGG | + | chr5_3:68536650-68536669 | Msa0827370:intron | 25.0% |
| ! | CATCATTGAAATGTCAAATT+CGG | - | chr5_3:68536706-68536725 | None:intergenic | 25.0% |
| ! | ACATTTCAATGATGATCAAA+TGG | + | chr5_3:68536712-68536731 | Msa0827370:intron | 25.0% |
| !!! | ATAATGGGATTCTTTTTCTT+TGG | + | chr5_3:68536961-68536980 | Msa0827370:CDS | 25.0% |
| !! | TAATGGGATTCTTTTTCTTT+GGG | + | chr5_3:68536962-68536981 | Msa0827370:CDS | 25.0% |
| ! | CTTAATCTTCATGTAGTTAT+AGG | + | chr5_3:68536994-68537013 | Msa0827370:CDS | 25.0% |
| !! | GAAAAGATGAAAATTTTCCA+GGG | - | chr5_3:68537335-68537354 | None:intergenic | 25.0% |
| TGTGAATAGAAAAGAAAGGT+GGG | - | chr5_3:68533413-68533432 | None:intergenic | 30.0% | |
| TGATACACTCAATTTGGATT+TGG | - | chr5_3:68533878-68533897 | None:intergenic | 30.0% | |
| CTAAAGTGATACACTCAATT+TGG | - | chr5_3:68533884-68533903 | None:intergenic | 30.0% | |
| ATTGAGTGTATCACTTTAGA+TGG | + | chr5_3:68533885-68533904 | Msa0827370:intron | 30.0% | |
| GACAAATAAAAAGACTTGAC+TGG | - | chr5_3:68534014-68534033 | None:intergenic | 30.0% | |
| TTAATCCTTCAAACTTCACA+CGG | - | chr5_3:68534253-68534272 | None:intergenic | 30.0% | |
| ! | CATTGTAAACAAAGCTTTGA+TGG | + | chr5_3:68534366-68534385 | Msa0827370:CDS | 30.0% |
| !! | AATTTTAGAAGTTCGGACAA+TGG | - | chr5_3:68534637-68534656 | None:intergenic | 30.0% |
| TTTGCTAACTTCTCTATTGT+TGG | + | chr5_3:68534664-68534683 | Msa0827370:CDS | 30.0% | |
| GAATGAATGTCAGTTTAATG+TGG | + | chr5_3:68534686-68534705 | Msa0827370:CDS | 30.0% | |
| TGGATTCTATCAAGTAAGTT+CGG | + | chr5_3:68534717-68534736 | Msa0827370:intron | 30.0% | |
| ! | GAAACAAATTTAACTTCTGG+AGG | - | chr5_3:68534774-68534793 | None:intergenic | 30.0% |
| !! | AGCATAGGTATTGTTCTTTT+GGG | + | chr5_3:68534896-68534915 | Msa0827370:CDS | 30.0% |
| ! | TGTTTCTTAGAATTTGGGTT+TGG | + | chr5_3:68535057-68535076 | Msa0827370:intron | 30.0% |
| ! | GTTTCTTAGAATTTGGGTTT+GGG | + | chr5_3:68535058-68535077 | Msa0827370:intron | 30.0% |
| ! | TTTCTTAGAATTTGGGTTTG+GGG | + | chr5_3:68535059-68535078 | Msa0827370:intron | 30.0% |
| ! | CGTGATTCAATTTTTAATGC+GGG | - | chr5_3:68535245-68535264 | None:intergenic | 30.0% |
| TGTGTAGACAAGAAAAAACA+AGG | + | chr5_3:68535366-68535385 | Msa0827370:intron | 30.0% | |
| AGTTAAAATTCTAAATGGCC+TGG | - | chr5_3:68535597-68535616 | None:intergenic | 30.0% | |
| ATCTATAGATTTCTGACACA+TGG | - | chr5_3:68535621-68535640 | None:intergenic | 30.0% | |
| ATGTGTCAGAAATCTATAGA+TGG | + | chr5_3:68535620-68535639 | Msa0827370:intron | 30.0% | |
| CAGAAATCTATAGATGGAAT+TGG | + | chr5_3:68535626-68535645 | Msa0827370:intron | 30.0% | |
| ! | AAGAATGGACATTTGAAATG+TGG | + | chr5_3:68535716-68535735 | Msa0827370:intron | 30.0% |
| ! | AGAATGGACATTTGAAATGT+GGG | + | chr5_3:68535717-68535736 | Msa0827370:intron | 30.0% |
| TATCTTAGAATTTGAGGGTA+GGG | + | chr5_3:68535792-68535811 | Msa0827370:intron | 30.0% | |
| ACCTAAGTCATATCTTTGTT+CGG | + | chr5_3:68535880-68535899 | Msa0827370:intron | 30.0% | |
| ATCAGAAACGAATACTAATG+CGG | + | chr5_3:68535944-68535963 | Msa0827370:intron | 30.0% | |
| ! | CTATGAACACTCCTTTTAAT+TGG | + | chr5_3:68536021-68536040 | Msa0827370:intron | 30.0% |
| !! | CACTCCTTTTAATTGGTATA+TGG | + | chr5_3:68536028-68536047 | Msa0827370:intron | 30.0% |
| GACACCATATACCAATTAAA+AGG | - | chr5_3:68536035-68536054 | None:intergenic | 30.0% | |
| TCCGTAGCATTCAATATTAA+TGG | + | chr5_3:68536080-68536099 | Msa0827370:intron | 30.0% | |
| CCCATTAATATTGAATGCTA+CGG | - | chr5_3:68536084-68536103 | None:intergenic | 30.0% | |
| CCGTAGCATTCAATATTAAT+GGG | + | chr5_3:68536081-68536100 | Msa0827370:intron | 30.0% | |
| ! | ACTAAGTTCTTTCAACCTTT+TGG | + | chr5_3:68536155-68536174 | Msa0827370:CDS | 30.0% |
| ! | CTAAGTTCTTTCAACCTTTT+GGG | + | chr5_3:68536156-68536175 | Msa0827370:CDS | 30.0% |
| TTATACTAAGCTTCTGTGTT+TGG | + | chr5_3:68536806-68536825 | Msa0827370:intron | 30.0% | |
| ACAGTATTCACTCATTATGA+TGG | + | chr5_3:68537136-68537155 | Msa0827370:three_prime_UTR | 30.0% | |
| ! | GGAAAAGATGAAAATTTTCC+AGG | - | chr5_3:68537336-68537355 | None:intergenic | 30.0% |
| ! | AAGAATGATCTGAGGTTGAA+AGG | - | chr5_3:68533380-68533399 | None:intergenic | 35.0% |
| GTGAATAGAAAAGAAAGGTG+GGG | - | chr5_3:68533412-68533431 | None:intergenic | 35.0% | |
| GTGTGAATAGAAAAGAAAGG+TGG | - | chr5_3:68533414-68533433 | None:intergenic | 35.0% | |
| GAGGTGTGAATAGAAAAGAA+AGG | - | chr5_3:68533417-68533436 | None:intergenic | 35.0% | |
| GATGTGATAGATTGAGAATG+TGG | - | chr5_3:68533479-68533498 | None:intergenic | 35.0% | |
| !!! | TTTTTTGAATGCCACCCTTA+TGG | + | chr5_3:68533633-68533652 | Msa0827370:intron | 35.0% |
| ATGCATACAGATCCAAGAAA+GGG | - | chr5_3:68533668-68533687 | None:intergenic | 35.0% | |
| AATGCATACAGATCCAAGAA+AGG | - | chr5_3:68533669-68533688 | None:intergenic | 35.0% | |
| TTTCTTGGATCTGTATGCAT+TGG | + | chr5_3:68533668-68533687 | Msa0827370:intron | 35.0% | |
| TACACTCAATTTGGATTTGG+TGG | - | chr5_3:68533875-68533894 | None:intergenic | 35.0% | |
| CGATAGTGTGAATTCAAAAG+TGG | - | chr5_3:68533986-68534005 | None:intergenic | 35.0% | |
| TTTACACAAACAAAGAAGCC+TGG | - | chr5_3:68534168-68534187 | None:intergenic | 35.0% | |
| ACTCCTGCATTATTTGAAAG+TGG | + | chr5_3:68534195-68534214 | Msa0827370:five_prime_UTR | 35.0% | |
| CTGCATTATTTGAAAGTGGA+GGG | + | chr5_3:68534199-68534218 | Msa0827370:five_prime_UTR | 35.0% | |
| TTCAATGTTGTCACATCTGT+TGG | + | chr5_3:68534337-68534356 | Msa0827370:CDS | 35.0% | |
| AGTTTAATGTGGAACTCAGT+TGG | + | chr5_3:68534697-68534716 | Msa0827370:CDS | 35.0% | |
| !! | GGCTGACTTTTTCTCTATTT+TGG | + | chr5_3:68534738-68534757 | Msa0827370:intron | 35.0% |
| TACAGGGATCATACTCAATT+TGG | - | chr5_3:68534819-68534838 | None:intergenic | 35.0% | |
| !! | GAGCATAGGTATTGTTCTTT+TGG | + | chr5_3:68534895-68534914 | Msa0827370:CDS | 35.0% |
| GACGTAAGTGTAAACATGAA+AGG | + | chr5_3:68534941-68534960 | Msa0827370:CDS | 35.0% | |
| !! | CACCTCAAAATTGACTTGTA+AGG | + | chr5_3:68535092-68535111 | Msa0827370:intron | 35.0% |
| ! | CACCTTACAAGTCAATTTTG+AGG | - | chr5_3:68535097-68535116 | None:intergenic | 35.0% |
| GAAGGAATTGGGAAAATGAA+GGG | - | chr5_3:68535183-68535202 | None:intergenic | 35.0% | |
| GGAAATCTATGGAAGGAATT+GGG | - | chr5_3:68535194-68535213 | None:intergenic | 35.0% | |
| GAAATTTAACTGCCATGTGT+CGG | - | chr5_3:68535215-68535234 | None:intergenic | 35.0% | |
| !! | CTCTTCTCCTTGCTTTTATA+TGG | + | chr5_3:68535309-68535328 | Msa0827370:intron | 35.0% |
| AAGCATCTAATGTATCTGTG+CGG | + | chr5_3:68535528-68535547 | Msa0827370:intron | 35.0% | |
| AGATGGAATTGGGTAAATAG+AGG | + | chr5_3:68535637-68535656 | Msa0827370:intron | 35.0% | |
| CTATCTTAGAATTTGAGGGT+AGG | + | chr5_3:68535791-68535810 | Msa0827370:intron | 35.0% | |
| ATCTTAGAATTTGAGGGTAG+GGG | + | chr5_3:68535793-68535812 | Msa0827370:intron | 35.0% | |
| ACTAACTTGATCCCACAAAT+CGG | + | chr5_3:68535816-68535835 | Msa0827370:intron | 35.0% | |
| ! | ACTGTCCAAACCTTATTTGT+AGG | + | chr5_3:68535853-68535872 | Msa0827370:intron | 35.0% |
| TAGTGCCTACAAATAAGGTT+TGG | - | chr5_3:68535861-68535880 | None:intergenic | 35.0% | |
| TTAGGTAGTGCCTACAAATA+AGG | - | chr5_3:68535866-68535885 | None:intergenic | 35.0% | |
| ACCGAACAAAGATATGACTT+AGG | - | chr5_3:68535884-68535903 | None:intergenic | 35.0% | |
| TCAGAAACGAATACTAATGC+GGG | + | chr5_3:68535945-68535964 | Msa0827370:intron | 35.0% | |
| !! | TTAAAAGGAGTGTTCATAGC+AGG | - | chr5_3:68536020-68536039 | None:intergenic | 35.0% |
| ! | GCTGGATCACTATTGTTATT+GGG | + | chr5_3:68536198-68536217 | Msa0827370:CDS | 35.0% |
| TCAACCAATAGTCTAGAAGA+GGG | - | chr5_3:68536224-68536243 | None:intergenic | 35.0% | |
| ACATCCATGTGAATCTACAA+AGG | - | chr5_3:68536379-68536398 | None:intergenic | 35.0% | |
| TTTGTAGATTCACATGGATG+TGG | + | chr5_3:68536378-68536397 | Msa0827370:intron | 35.0% | |
| CATGGATGTGGATATTATAC+TGG | + | chr5_3:68536390-68536409 | Msa0827370:intron | 35.0% | |
| ATCTGCCAATGCAGATAAAT+TGG | - | chr5_3:68536888-68536907 | None:intergenic | 35.0% | |
| TCTTCATATGTCCAAGTACT+TGG | - | chr5_3:68536927-68536946 | None:intergenic | 35.0% | |
| ACTAGCTGATATCTCCTTAT+AGG | + | chr5_3:68537303-68537322 | Msa0827370:three_prime_UTR | 35.0% | |
| CGTGAAAGAATCCGAAAACA+TGG | + | chr5_3:68533118-68533137 | Msa0827370:five_prime_UTR | 40.0% | |
| TTGCTTATTTGCTTTGCAGC+AGG | - | chr5_3:68533333-68533352 | None:intergenic | 40.0% | |
| TGAGGTTGAAAGGAGTTGTA+TGG | - | chr5_3:68533370-68533389 | None:intergenic | 40.0% | |
| TGCATACAGATCCAAGAAAG+GGG | - | chr5_3:68533667-68533686 | None:intergenic | 40.0% | |
| ! | TTATGACCTTCCATTTTGCC+AGG | + | chr5_3:68534147-68534166 | Msa0827370:intron | 40.0% |
| AACAAAGAAGCCTGGCAAAA+TGG | - | chr5_3:68534160-68534179 | None:intergenic | 40.0% | |
| CCTCCACTTTCAAATAATGC+AGG | - | chr5_3:68534201-68534220 | None:intergenic | 40.0% | |
| CCTGCATTATTTGAAAGTGG+AGG | + | chr5_3:68534198-68534217 | Msa0827370:five_prime_UTR | 40.0% | |
| TGAAAGTGGAGGGAATGTTA+TGG | + | chr5_3:68534209-68534228 | Msa0827370:five_prime_UTR | 40.0% | |
| TTCTTCTCAGCTTTGCTTGA+AGG | - | chr5_3:68534289-68534308 | None:intergenic | 40.0% | |
| TTCAAGCAAAGCTGAGAAGA+AGG | + | chr5_3:68534288-68534307 | Msa0827370:CDS | 40.0% | |
| ! | GTAAACAAAGCTTTGATGGG+TGG | + | chr5_3:68534370-68534389 | Msa0827370:CDS | 40.0% |
| ! | AAAGCTTTGATGGGTGGTTA+TGG | + | chr5_3:68534376-68534395 | Msa0827370:CDS | 40.0% |
| !! | TTAACTTCTGGAGGCACTAA+TGG | - | chr5_3:68534765-68534784 | None:intergenic | 40.0% |
| TCAATTTGGCAATCTGCCAA+TGG | - | chr5_3:68534805-68534824 | None:intergenic | 40.0% | |
| CAAACAAACTTCCAACAAGC+AGG | - | chr5_3:68534843-68534862 | None:intergenic | 40.0% | |
| ! | CTGCTTGTTGGAAGTTTGTT+TGG | + | chr5_3:68534841-68534860 | Msa0827370:CDS | 40.0% |
| AGAGACACAAAACTGAGCAT+AGG | + | chr5_3:68534881-68534900 | Msa0827370:CDS | 40.0% | |
| !! | GGTATTGTTCTTTTGGGAGT+TGG | + | chr5_3:68534902-68534921 | Msa0827370:CDS | 40.0% |
| TGTACTCCACACTGCTATAA+AGG | - | chr5_3:68534978-68534997 | None:intergenic | 40.0% | |
| GCTCAAACCTTGTAAGAACT+TGG | + | chr5_3:68535122-68535141 | Msa0827370:intron | 40.0% | |
| GGTAGTACCAAGTTCTTACA+AGG | - | chr5_3:68535132-68535151 | None:intergenic | 40.0% | |
| AATGGAGCAAAGTTGAACTC+AGG | - | chr5_3:68535153-68535172 | None:intergenic | 40.0% | |
| GGAAGGAATTGGGAAAATGA+AGG | - | chr5_3:68535184-68535203 | None:intergenic | 40.0% | |
| CGGAAATCTATGGAAGGAAT+TGG | - | chr5_3:68535195-68535214 | None:intergenic | 40.0% | |
| ATGTGTCGGAAATCTATGGA+AGG | - | chr5_3:68535201-68535220 | None:intergenic | 40.0% | |
| TTCCATAGATTTCCGACACA+TGG | + | chr5_3:68535200-68535219 | Msa0827370:intron | 40.0% | |
| GATAGAATCGAACTCTGTTC+AGG | - | chr5_3:68535287-68535306 | None:intergenic | 40.0% | |
| TTATCGGGTAAACATCTGTG+CGG | + | chr5_3:68535492-68535511 | Msa0827370:intron | 40.0% | |
| AGCATCTAATGTATCTGTGC+GGG | + | chr5_3:68535529-68535548 | Msa0827370:intron | 40.0% | |
| GCAAAGTTGAACTCATACCT+AGG | + | chr5_3:68535674-68535693 | Msa0827370:intron | 40.0% | |
| ATCTCTCTCACGCTTAAGAA+TGG | + | chr5_3:68535701-68535720 | Msa0827370:intron | 40.0% | |
| ! | ATGGACATTTGAAATGTGGG+TGG | + | chr5_3:68535720-68535739 | Msa0827370:intron | 40.0% |
| !! | CATCTTACTAGCCGATTTGT+GGG | - | chr5_3:68535830-68535849 | None:intergenic | 40.0% |
| !! | TCATCTTACTAGCCGATTTG+TGG | - | chr5_3:68535831-68535850 | None:intergenic | 40.0% |
| ! | AGTCATATCTTTGTTCGGTG+TGG | + | chr5_3:68535885-68535904 | Msa0827370:intron | 40.0% |
| !! | GTCATATCTTTGTTCGGTGT+GGG | + | chr5_3:68535886-68535905 | Msa0827370:intron | 40.0% |
| TTCTACTCTTGAGTGTGAGA+GGG | - | chr5_3:68535924-68535943 | None:intergenic | 40.0% | |
| TTTCTACTCTTGAGTGTGAG+AGG | - | chr5_3:68535925-68535944 | None:intergenic | 40.0% | |
| GGCTGGATCACTATTGTTAT+TGG | + | chr5_3:68536197-68536216 | Msa0827370:CDS | 40.0% | |
| GTCAACCAATAGTCTAGAAG+AGG | - | chr5_3:68536225-68536244 | None:intergenic | 40.0% | |
| TACGCCTTTGTAGATTCACA+TGG | + | chr5_3:68536372-68536391 | Msa0827370:intron | 40.0% | |
| ! | TAAGCTTCTGTGTTTGGCTT+TGG | + | chr5_3:68536812-68536831 | Msa0827370:intron | 40.0% |
| TGTCATGCACTATTGCAGTT+GGG | + | chr5_3:68536851-68536870 | Msa0827370:CDS | 40.0% | |
| CAATGCAGATAAATTGGCTG+AGG | - | chr5_3:68536882-68536901 | None:intergenic | 40.0% | |
| CTCAGCCAATTTATCTGCAT+TGG | + | chr5_3:68536880-68536899 | Msa0827370:CDS | 40.0% | |
| GCTGTATCTTTCCAAGTACT+TGG | + | chr5_3:68536913-68536932 | Msa0827370:CDS | 40.0% | |
| ! | TGGGATTCTTTTTCTTTGGG+AGG | + | chr5_3:68536965-68536984 | Msa0827370:CDS | 40.0% |
| !! | GGGATTCTTTTTCTTTGGGA+GGG | + | chr5_3:68536966-68536985 | Msa0827370:CDS | 40.0% |
| !! | TTCTTTTTCTTTGGGAGGGA+AGG | + | chr5_3:68536970-68536989 | Msa0827370:CDS | 40.0% |
| GGGATGATAATAGCTGTTGT+TGG | + | chr5_3:68537015-68537034 | Msa0827370:CDS | 40.0% | |
| TAGCTGTTGTTGGAATGATG+TGG | + | chr5_3:68537025-68537044 | Msa0827370:CDS | 40.0% | |
| GTTGTTGGAATGATGTGGTA+TGG | + | chr5_3:68537030-68537049 | Msa0827370:CDS | 40.0% | |
| ! | GACTTTCTGTTTTGCTGGTA+GGG | - | chr5_3:68537104-68537123 | None:intergenic | 40.0% |
| CTACCAGCAAAACAGAAAGT+CGG | + | chr5_3:68537103-68537122 | Msa0827370:CDS | 40.0% | |
| TTGCAAAAGTTGAGTACAGC+AGG | + | chr5_3:68537172-68537191 | Msa0827370:three_prime_UTR | 40.0% | |
| ! | ACAGCAGGATAGTTGATTCT+AGG | + | chr5_3:68537187-68537206 | Msa0827370:three_prime_UTR | 40.0% |
| TATTTGCTTTGCAGCAGGAG+TGG | - | chr5_3:68533328-68533347 | None:intergenic | 45.0% | |
| GTGTTGGGAAGAATGATCTG+AGG | - | chr5_3:68533388-68533407 | None:intergenic | 45.0% | |
| AAAGAAAGGTGGGGTGTGTT+GGG | - | chr5_3:68533403-68533422 | None:intergenic | 45.0% | |
| AAAAGAAAGGTGGGGTGTGT+TGG | - | chr5_3:68533404-68533423 | None:intergenic | 45.0% | |
| TCTATTCACACCTCCATCCA+CGG | + | chr5_3:68533423-68533442 | Msa0827370:five_prime_UTR | 45.0% | |
| AAAAGGAAGCTAACCGTGGA+TGG | - | chr5_3:68533439-68533458 | None:intergenic | 45.0% | |
| AGAGAAAAGGAAGCTAACCG+TGG | - | chr5_3:68533443-68533462 | None:intergenic | 45.0% | |
| AAGGGGTCTCAGATCCATAA+GGG | - | chr5_3:68533650-68533669 | None:intergenic | 45.0% | |
| AAAGGGGTCTCAGATCCATA+AGG | - | chr5_3:68533651-68533670 | None:intergenic | 45.0% | |
| AAGAAGCCTGGCAAAATGGA+AGG | - | chr5_3:68534156-68534175 | None:intergenic | 45.0% | |
| AAGTGGAGGGAATGTTATGG+AGG | + | chr5_3:68534212-68534231 | Msa0827370:five_prime_UTR | 45.0% | |
| GAGATCCGTGTGAAGTTTGA+AGG | + | chr5_3:68534245-68534264 | Msa0827370:five_prime_UTR | 45.0% | |
| ! | GGTGGTTATGGCTTCAGTTT+TGG | + | chr5_3:68534388-68534407 | Msa0827370:CDS | 45.0% |
| CTATCATGACGCTCGTACTA+CGG | + | chr5_3:68534581-68534600 | Msa0827370:CDS | 45.0% | |
| TATCATGACGCTCGTACTAC+GGG | + | chr5_3:68534582-68534601 | Msa0827370:CDS | 45.0% | |
| ACAATGGAAGATGAGATGGC+TGG | - | chr5_3:68534621-68534640 | None:intergenic | 45.0% | |
| TCGGACAATGGAAGATGAGA+TGG | - | chr5_3:68534625-68534644 | None:intergenic | 45.0% | |
| CTTCCAACAAGCAGGATACA+GGG | - | chr5_3:68534835-68534854 | None:intergenic | 45.0% | |
| ACTTCCAACAAGCAGGATAC+AGG | - | chr5_3:68534836-68534855 | None:intergenic | 45.0% | |
| TTGCTGCCTTTATAGCAGTG+TGG | + | chr5_3:68534969-68534988 | Msa0827370:CDS | 45.0% | |
| TGCCATGTGTCGGAAATCTA+TGG | - | chr5_3:68535205-68535224 | None:intergenic | 45.0% | |
| GCGACGTCCATATAAAAGCA+AGG | - | chr5_3:68535319-68535338 | None:intergenic | 45.0% | |
| GCATCTAATGTATCTGTGCG+GGG | + | chr5_3:68535530-68535549 | Msa0827370:intron | 45.0% | |
| CATCTAATGTATCTGTGCGG+GGG | + | chr5_3:68535531-68535550 | Msa0827370:intron | 45.0% | |
| GAAACGAATACTAATGCGGG+TGG | + | chr5_3:68535948-68535967 | Msa0827370:intron | 45.0% | |
| !! | AAAGGAGTGTTCATAGCAGG+CGG | - | chr5_3:68536017-68536036 | None:intergenic | 45.0% |
| TTATCCAGAACTTACCGAGG+AGG | - | chr5_3:68536283-68536302 | None:intergenic | 45.0% | |
| CTGTTATCCAGAACTTACCG+AGG | - | chr5_3:68536286-68536305 | None:intergenic | 45.0% | |
| CAACTGCAATAGTGCATGAC+AGG | - | chr5_3:68536852-68536871 | None:intergenic | 45.0% | |
| CTGTCATGCACTATTGCAGT+TGG | + | chr5_3:68536850-68536869 | Msa0827370:CDS | 45.0% | |
| GCAGATAAATTGGCTGAGGT+TGG | - | chr5_3:68536878-68536897 | None:intergenic | 45.0% | |
| ! | TGGTAATGCCTCATCAAAGC+CGG | + | chr5_3:68537050-68537069 | Msa0827370:CDS | 45.0% |
| ! | CGACTTTCTGTTTTGCTGGT+AGG | - | chr5_3:68537105-68537124 | None:intergenic | 45.0% |
| !!! | TCACCGACTTTCTGTTTTGC+TGG | - | chr5_3:68537109-68537128 | None:intergenic | 45.0% |
| ! | TTCCAGGGAGCATACCTATA+AGG | - | chr5_3:68537320-68537339 | None:intergenic | 45.0% |
| ! | TGGATCTGAGACCCCTTTCT+TGG | + | chr5_3:68533653-68533672 | Msa0827370:intron | 50.0% |
| GCCTGCAGCTACAACGTTAA+CGG | + | chr5_3:68534537-68534556 | Msa0827370:intron | 50.0% | |
| CCTGCAGCTACAACGTTAAC+GGG | + | chr5_3:68534538-68534557 | Msa0827370:intron | 50.0% | |
| GATCCCTGTATCCTGCTTGT+TGG | + | chr5_3:68534829-68534848 | Msa0827370:CDS | 50.0% | |
| TCTACACAGCATTGCAGCAG+TGG | - | chr5_3:68535354-68535373 | None:intergenic | 50.0% | |
| GCGTGAGAGAGATATGACCT+AGG | - | chr5_3:68535694-68535713 | None:intergenic | 50.0% | |
| AATAGTGATCCAGCCTGTGC+GGG | - | chr5_3:68536192-68536211 | None:intergenic | 50.0% | |
| CAATAGTGATCCAGCCTGTG+CGG | - | chr5_3:68536193-68536212 | None:intergenic | 50.0% | |
| TGGGCCCTCTTCTAGACTAT+TGG | + | chr5_3:68536217-68536236 | Msa0827370:CDS | 50.0% | |
| TTCTTACGATGCAGCCTCCT+CGG | + | chr5_3:68536266-68536285 | Msa0827370:CDS | 50.0% | |
| GGTAATGCCTCATCAAAGCC+GGG | + | chr5_3:68537051-68537070 | Msa0827370:CDS | 50.0% | |
| CTCCTTATAGGTATGCTCCC+TGG | + | chr5_3:68537315-68537334 | Msa0827370:three_prime_UTR | 50.0% | |
| AGGAAGCTAACCGTGGATGG+AGG | - | chr5_3:68533436-68533455 | None:intergenic | 55.0% | |
| GGGTCTCAGATCCATAAGGG+TGG | - | chr5_3:68533647-68533666 | None:intergenic | 55.0% | |
| CATCCATGCCGCAGCATCTA+CGG | - | chr5_3:68534317-68534336 | None:intergenic | 55.0% | |
| CCCGTTAACGTTGTAGCTGC+AGG | - | chr5_3:68534541-68534560 | None:intergenic | 55.0% | |
| ! | CGGGTGCTGTATGTCCCAAA+AGG | - | chr5_3:68536173-68536192 | None:intergenic | 55.0% |
| AATGCCTCATCAAAGCCGGG+TGG | + | chr5_3:68537054-68537073 | Msa0827370:CDS | 55.0% | |
| ! | CTTTCCACCCGGCTTTGATG+AGG | - | chr5_3:68537061-68537080 | None:intergenic | 55.0% |
| CTCATCAAAGCCGGGTGGAA+AGG | + | chr5_3:68537059-68537078 | Msa0827370:CDS | 55.0% | |
| CTCCAACGTTCCTTTCCACC+CGG | - | chr5_3:68537072-68537091 | None:intergenic | 55.0% | |
| GAAGGCAGCCGTAGATGCTG+CGG | + | chr5_3:68534306-68534325 | Msa0827370:CDS | 60.0% | |
| ACGCTCGTACTACGGGTGCT+GGG | + | chr5_3:68534589-68534608 | Msa0827370:CDS | 60.0% | |
| GCAGCCTCCTCGGTAAGTTC+TGG | + | chr5_3:68536276-68536295 | Msa0827370:intron | 60.0% | |
| AGCCGGGTGGAAAGGAACGT+TGG | + | chr5_3:68537067-68537086 | Msa0827370:CDS | 60.0% | |
| CAGCCGTAGATGCTGCGGCA+TGG | + | chr5_3:68534311-68534330 | Msa0827370:CDS | 65.0% | |
| GACGCTCGTACTACGGGTGC+TGG | + | chr5_3:68534588-68534607 | Msa0827370:CDS | 65.0% | |
| GGGACATACAGCACCCGCAC+AGG | + | chr5_3:68536176-68536195 | Msa0827370:CDS | 65.0% | |
| CATACAGCACCCGCACAGGC+TGG | + | chr5_3:68536180-68536199 | Msa0827370:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 68533099 | 68537414 | 68533099 | ID=Msa0827370;Name=Msa0827370 |
| chr5_3 | mRNA | 68533099 | 68537414 | 68533099 | ID=Msa0827370-mRNA-1;Parent=Msa0827370;Name=Msa0827370-mRNA-1;_AED=0.10;_eAED=0.10;_QI=410|1|1|1|0.66|0.57|7|286|322 |
| chr5_3 | exon | 68533099 | 68533166 | 68533099 | ID=Msa0827370-mRNA-1:exon:21505;Parent=Msa0827370-mRNA-1 |
| chr5_3 | exon | 68533214 | 68533444 | 68533214 | ID=Msa0827370-mRNA-1:exon:21506;Parent=Msa0827370-mRNA-1 |
| chr5_3 | exon | 68534169 | 68534409 | 68534169 | ID=Msa0827370-mRNA-1:exon:21507;Parent=Msa0827370-mRNA-1 |
| chr5_3 | exon | 68534545 | 68534729 | 68534545 | ID=Msa0827370-mRNA-1:exon:21508;Parent=Msa0827370-mRNA-1 |
| chr5_3 | exon | 68534812 | 68535012 | 68534812 | ID=Msa0827370-mRNA-1:exon:21509;Parent=Msa0827370-mRNA-1 |
| chr5_3 | exon | 68536126 | 68536287 | 68536126 | ID=Msa0827370-mRNA-1:exon:21510;Parent=Msa0827370-mRNA-1 |
| chr5_3 | exon | 68536838 | 68537414 | 68536838 | ID=Msa0827370-mRNA-1:exon:21511;Parent=Msa0827370-mRNA-1 |
| chr5_3 | five_prime_UTR | 68533099 | 68533166 | 68533099 | ID=Msa0827370-mRNA-1:five_prime_utr;Parent=Msa0827370-mRNA-1 |
| chr5_3 | five_prime_UTR | 68533214 | 68533444 | 68533214 | ID=Msa0827370-mRNA-1:five_prime_utr;Parent=Msa0827370-mRNA-1 |
| chr5_3 | five_prime_UTR | 68534169 | 68534279 | 68534169 | ID=Msa0827370-mRNA-1:five_prime_utr;Parent=Msa0827370-mRNA-1 |
| chr5_3 | CDS | 68534280 | 68534409 | 68534280 | ID=Msa0827370-mRNA-1:cds;Parent=Msa0827370-mRNA-1 |
| chr5_3 | CDS | 68534545 | 68534729 | 68534545 | ID=Msa0827370-mRNA-1:cds;Parent=Msa0827370-mRNA-1 |
| chr5_3 | CDS | 68534812 | 68535012 | 68534812 | ID=Msa0827370-mRNA-1:cds;Parent=Msa0827370-mRNA-1 |
| chr5_3 | CDS | 68536126 | 68536287 | 68536126 | ID=Msa0827370-mRNA-1:cds;Parent=Msa0827370-mRNA-1 |
| chr5_3 | CDS | 68536838 | 68537128 | 68536838 | ID=Msa0827370-mRNA-1:cds;Parent=Msa0827370-mRNA-1 |
| chr5_3 | three_prime_UTR | 68537129 | 68537414 | 68537129 | ID=Msa0827370-mRNA-1:three_prime_utr;Parent=Msa0827370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
