AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0240540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0240540 MtrunA17_Chr2g0292051 97.494 439 10 1 1 438 1 439 0.0 862
Msa0240540 MtrunA17_Chr1g0199801 46.358 453 188 12 20 418 11 462 3.15e-132 389
Msa0240540 MtrunA17_Chr1g0185551 36.697 436 191 10 23 432 1 377 2.30e-77 245
Msa0240540 MtrunA17_Chr7g0259871 38.875 391 190 11 23 395 1 360 8.52e-75 238
Msa0240540 MtrunA17_Chr5g0402451 30.548 347 187 15 68 366 10 350 1.38e-27 113
Msa0240540 MtrunA17_Chr5g0402441 30.857 350 179 17 68 366 16 353 8.55e-27 111
Msa0240540 MtrunA17_Chr1g0153781 26.603 421 238 16 53 421 6 407 8.65e-24 102
Msa0240540 MtrunA17_Chr8g0335591 27.913 369 226 17 68 401 32 395 6.46e-23 100
Msa0240540 MtrunA17_Chr3g0133691 28.065 367 210 17 85 402 36 397 1.18e-22 99.4
Msa0240540 MtrunA17_Chr8g0335581 25.455 385 245 13 68 416 21 399 1.70e-22 99.0
Msa0240540 MtrunA17_Chr8g0335611 28.649 370 224 15 68 401 32 397 2.11e-21 95.9
Msa0240540 MtrunA17_Chr3g0133681 26.829 369 212 17 85 402 36 397 3.75e-21 95.1
Msa0240540 MtrunA17_Chr8g0335621 28.378 370 225 15 68 401 63 428 7.85e-21 94.4
Msa0240540 MtrunA17_Chr8g0335631 27.507 349 212 13 88 401 51 393 3.35e-20 92.4
Msa0240540 MtrunA17_Chr8g0335651 28.070 342 208 14 88 401 52 383 1.19e-19 90.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0240540 AT3G54950.1 48.519 439 197 7 2 413 31 467 2.24e-135 398
Msa0240540 AT2G39220.1 47.511 442 183 7 20 413 40 480 1.92e-130 386
Msa0240540 AT4G29800.1 42.333 463 201 8 16 413 43 504 1.08e-112 341
Msa0240540 AT4G29800.2 42.241 464 201 9 16 413 43 505 7.98e-111 337
Msa0240540 AT3G63200.1 41.872 406 178 11 23 408 3 370 9.50e-87 270
Msa0240540 AT4G37060.1 30.130 385 217 18 68 404 19 399 1.49e-28 116
Msa0240540 AT2G26560.1 29.551 379 219 15 68 401 19 394 1.38e-25 108
Msa0240540 AT4G37070.2 28.385 384 220 17 68 402 19 396 2.99e-24 104
Msa0240540 AT4G37060.2 27.952 415 218 19 68 404 19 430 1.28e-23 103
Msa0240540 AT4G37070.3 28.649 370 209 17 68 388 19 382 3.73e-23 100
Msa0240540 AT4G37070.1 28.649 370 209 17 68 388 19 382 3.73e-23 100
Msa0240540 AT4G37050.1 28.032 371 209 16 88 403 54 421 4.29e-23 101
Msa0240540 AT5G43590.1 27.778 288 168 10 88 337 33 318 1.36e-20 93.6
Msa0240540 AT5G43590.2 27.778 288 168 10 88 337 100 385 2.76e-20 93.2
Msa0240540 AT4G37070.4 27.297 370 203 17 68 388 19 371 2.96e-19 89.4

Find 116 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACGAAATCTTCTCCATTT+TGG 0.129885 2_2:+15793358 Msa0240540:CDS
AACTTAATGTCTTGTGGTTT+TGG 0.200873 2_2:+15795028 Msa0240540:three_prime_UTR
GTGTATTGAAACATTGATTA+TGG 0.206328 2_2:+15795312 Msa0240540:three_prime_UTR
GTTGAGTCAGTCTTATTTAA+AGG 0.208877 2_2:+15794707 Msa0240540:CDS
ATCGGATTTGGTGGCGGTTT+CGG 0.267788 2_2:+15794661 Msa0240540:CDS
TTGGAAAACAAATTCTTATT+CGG 0.286942 2_2:+15793377 Msa0240540:CDS
GGTAGGTTGTAGTAATATTA+AGG 0.321641 2_2:-15795108 None:intergenic
TTAGACAAATTGAAATTGTT+TGG 0.328034 2_2:+15794755 Msa0240540:CDS
GTGATAGTGATTTGTTCATA+TGG 0.342580 2_2:+15795197 Msa0240540:three_prime_UTR
GTTTGGTGGAGAGTTGATTA+AGG 0.342805 2_2:+15794772 Msa0240540:CDS
AATATGAGAGTTATTGTTAC+CGG 0.360900 2_2:-15793567 None:intergenic
GCAGAGAATTCTGACTTTCC+CGG 0.367032 2_2:-15793465 None:intergenic
GTCCTAGGAGATGAAGTTCT+AGG 0.368900 2_2:-15794857 None:intergenic
TCAGGTTTCGTGAGAATTGC+CGG 0.370289 2_2:+15794172 Msa0240540:CDS
AAGAAAAGAGGAAGATTAGT+AGG 0.373541 2_2:+15794942 Msa0240540:three_prime_UTR
TGTGTGTTGGTTGTTGAAAA+TGG 0.373674 2_2:-15793178 None:intergenic
AACAGAATTTCGCGACGATC+GGG 0.376308 2_2:+15793722 Msa0240540:CDS
GGGGAAAACCACATCGGATT+TGG 0.391408 2_2:+15794649 Msa0240540:CDS
GAGGATGCCGTCGGTGTAAC+CGG 0.403495 2_2:-15793498 None:intergenic
CCAACTGTTGTGTTGAAGAA+TGG 0.412565 2_2:+15794824 Msa0240540:CDS
TTCGACGCCGTCGCCGGCTC+CGG 0.421417 2_2:+15793599 Msa0240540:CDS
TAACGGTGTTTCTGATTTGT+TGG 0.422061 2_2:+15794099 Msa0240540:CDS
CGCGACGATCGGGGATTCTC+CGG 0.426841 2_2:+15793732 Msa0240540:CDS
GATTTGTTGGTGCTTTCTCT+TGG 0.427963 2_2:+15794112 Msa0240540:CDS
CAAGCTGTATCAATGGCATT+TGG 0.428031 2_2:+15794554 Msa0240540:CDS
TATGTGCGGATTCAATCAAA+TGG 0.437366 2_2:+15794596 Msa0240540:CDS
CGGTGAAGGAGCTTCCGATA+TGG 0.438606 2_2:+15794192 Msa0240540:CDS
TTCATATGGGTATTGTCAAA+AGG 0.445205 2_2:+15795211 Msa0240540:three_prime_UTR
ACGAAGATCTTAGCCGTTGA+TGG 0.448292 2_2:+15794001 Msa0240540:CDS
GAAACCTGAGGGAGACTTAA+CGG 0.454179 2_2:-15794158 None:intergenic
AACACCACCGACACCGGAGC+CGG 0.455808 2_2:-15793612 None:intergenic
TGATAGTGATTTGTTCATAT+GGG 0.456559 2_2:+15795198 Msa0240540:three_prime_UTR
TACGTCTGAGGCAGGATTCA+AGG 0.458683 2_2:-15793541 None:intergenic
TCGTAGCAGGGAATTAAAAT+CGG 0.459582 2_2:-15793836 None:intergenic
GTCAGAATTCTCTGCATTGA+CGG 0.462797 2_2:+15793473 Msa0240540:CDS
GCGCGTGACGAGATCGTAGC+AGG 0.470309 2_2:-15793849 None:intergenic
ACCGGATTTACGTCTGAGGC+AGG 0.472586 2_2:-15793549 None:intergenic
GCCGTCGCCGGCTCCGGTGT+CGG 0.475467 2_2:+15793605 Msa0240540:CDS
TCCTAGGAGATGAAGTTCTA+GGG 0.478439 2_2:-15794856 None:intergenic
TCCTGCCTCAGACGTAAATC+CGG 0.478939 2_2:+15793548 Msa0240540:CDS
AAGGTAAACAAAGGGAAGAC+GGG 0.479023 2_2:+15794629 Msa0240540:CDS
GGCGGTTTCGGAGGAGATGT+TGG 0.485077 2_2:+15794673 Msa0240540:CDS
GACAAATTGAAATTGTTTGG+TGG 0.485720 2_2:+15794758 Msa0240540:CDS
TCGATGGACTTCAATTCAAT+AGG 0.487410 2_2:-15793971 None:intergenic
ATGTGCGGATTCAATCAAAT+GGG 0.488399 2_2:+15794597 Msa0240540:CDS
TTCAATTCAATAGGAGCCGC+TGG 0.490050 2_2:-15793962 None:intergenic
GGATTCAACACTGCACAGCT+TGG 0.491021 2_2:-15795083 None:intergenic
TAACAGAATTTCGCGACGAT+CGG 0.492357 2_2:+15793721 Msa0240540:CDS
AAATGAAATAATTATAATGT+AGG 0.494177 2_2:-15795129 None:intergenic
TTCTCTTGGTAACGGAGAGT+TGG 0.496512 2_2:+15794126 Msa0240540:CDS
GAAAGAGAGAATTTGTGTGT+TGG 0.497803 2_2:-15793191 None:intergenic
GAAATAATTATAATGTAGGT+AGG 0.499493 2_2:-15795125 None:intergenic
GGTTGTAGTAATATTAAGGA+TGG 0.505680 2_2:-15795104 None:intergenic
TTGGTGCTTTCTCTTGGTAA+CGG 0.511918 2_2:+15794118 Msa0240540:CDS
AACCACATCGGATTTGGTGG+CGG 0.512460 2_2:+15794655 Msa0240540:CDS
GAAAACCACATCGGATTTGG+TGG 0.517533 2_2:+15794652 Msa0240540:CDS
GTAGTAGCTGATGAAGTCCT+AGG 0.521279 2_2:-15794872 None:intergenic
GGTTGATCAAGCTGTATCAA+TGG 0.525148 2_2:+15794547 Msa0240540:intron
CCCCTAGAACTTCATCTCCT+AGG 0.526050 2_2:+15794855 Msa0240540:CDS
AGTTGATTAAGGAAGAAGAG+AGG 0.528571 2_2:+15794783 Msa0240540:CDS
TTCGTGAGAATTGCCGGTGA+AGG 0.529684 2_2:+15794178 Msa0240540:CDS
GAGTTTATCAACTTCGAAGT+TGG 0.530248 2_2:-15793333 None:intergenic
ATCAAATGGGGTGATGGCTA+AGG 0.530306 2_2:+15794610 Msa0240540:CDS
AACGCCGTTAAGTCTCCCTC+AGG 0.530840 2_2:+15794154 Msa0240540:CDS
AGTCAGTCTTATTTAAAGGA+AGG 0.532895 2_2:+15794711 Msa0240540:CDS
CCATTCTTCAACACAACAGT+TGG 0.536757 2_2:-15794824 None:intergenic
CATATCGGAAGCTCCTTCAC+CGG 0.540361 2_2:-15794191 None:intergenic
ATTCTCTGCATTGACGGCGC+CGG 0.540611 2_2:+15793479 Msa0240540:CDS
GATCTTCGTCTTCCCATCGA+TGG 0.541076 2_2:-15793987 None:intergenic
TAAGGTAAACAAAGGGAAGA+CGG 0.544495 2_2:+15794628 Msa0240540:CDS
TCAGAAACACCGTTACAAAA+CGG 0.547389 2_2:-15794091 None:intergenic
AGCGAGAACACCACCGACAC+CGG 0.553617 2_2:-15793618 None:intergenic
ACCGACACCGGAGCCGGCGA+CGG 0.555732 2_2:-15793606 None:intergenic
TTCAAGTTGTTGTTGAACAT+TGG 0.561464 2_2:-15793293 None:intergenic
GGAGATGAAGTTCTAGGGGA+GGG 0.565558 2_2:-15794851 None:intergenic
CAAAATGGAGAAGATTTCGT+AGG 0.566027 2_2:-15793357 None:intergenic
AAGGTGAGATAGTGATTTCG+CGG 0.567024 2_2:-15793522 None:intergenic
GATTTCGAGAGCGTCGGCGC+GGG 0.567460 2_2:-15793888 None:intergenic
TGAGTAACAGCAGTAGCCGT+TGG 0.567616 2_2:-15794043 None:intergenic
GATTCAATCAAATGGGGTGA+TGG 0.569656 2_2:+15794604 Msa0240540:CDS
CAGAAACTTCAAAGCTTCAT+CGG 0.575680 2_2:-15793687 None:intergenic
ATTGAATTGAAGTCCATCGA+TGG 0.577788 2_2:+15793974 Msa0240540:CDS
AGCCGCTGGATCAGCTGACG+TGG 0.581310 2_2:-15793948 None:intergenic
GACGGCGCCGGTTACACCGA+CGG 0.582223 2_2:+15793491 Msa0240540:CDS
GGATTTGGTGGCGGTTTCGG+AGG 0.583638 2_2:+15794664 Msa0240540:CDS
CATCGCAACACCTCCATCAA+CGG 0.587463 2_2:-15794014 None:intergenic
AGGAGATGAAGTTCTAGGGG+AGG 0.591108 2_2:-15794852 None:intergenic
TTGAATTGAAGTCCATCGAT+GGG 0.595371 2_2:+15793975 Msa0240540:CDS
ACAGAATTTCGCGACGATCG+GGG 0.599858 2_2:+15793723 Msa0240540:CDS
ATCGTCGCGAAATTCTGTTA+CGG 0.601025 2_2:-15793718 None:intergenic
GTCGCCGGCTCCGGTGTCGG+TGG 0.603825 2_2:+15793608 Msa0240540:CDS
CTTTCTTAATCGATCTCAAG+CGG 0.603928 2_2:-15795059 None:intergenic
CCTAGGAGATGAAGTTCTAG+GGG 0.628375 2_2:-15794855 None:intergenic
TGCCACGTCAGCTGATCCAG+CGG 0.628488 2_2:+15793946 Msa0240540:CDS
CGCGTGACGAGATCGTAGCA+GGG 0.629024 2_2:-15793848 None:intergenic
AAGATCTTAGCCGTTGATGG+AGG 0.638110 2_2:+15794004 Msa0240540:CDS
TTTCGCGGCGAGGATGCCGT+CGG 0.641184 2_2:-15793507 None:intergenic
GCAATTCTCACGAAACCTGA+GGG 0.641382 2_2:-15794169 None:intergenic
GTAGATTGAACAATTATGTG+CGG 0.642262 2_2:+15794582 Msa0240540:CDS
GGCAATTCTCACGAAACCTG+AGG 0.645971 2_2:-15794170 None:intergenic
ACCGTCGATTTCGAGAGCGT+CGG 0.652715 2_2:-15793894 None:intergenic
GTGATGGCTAAGGTAAACAA+AGG 0.654646 2_2:+15794620 Msa0240540:CDS
CGATTTCGAGAGCGTCGGCG+CGG 0.655501 2_2:-15793889 None:intergenic
TGATGGCTAAGGTAAACAAA+GGG 0.662128 2_2:+15794621 Msa0240540:CDS
ATTTAAAGGAAGGAAGATCG+TGG 0.667169 2_2:+15794721 Msa0240540:CDS
TCGGCGCGGGAGAAAACGAA+CGG 0.671166 2_2:-15793875 None:intergenic
GCCGACGCTCTCGAAATCGA+CGG 0.676469 2_2:+15793893 Msa0240540:CDS
TGTTACCGGATTTACGTCTG+AGG 0.679992 2_2:-15793553 None:intergenic
GAGATAGTGATTTCGCGGCG+AGG 0.680146 2_2:-15793517 None:intergenic
GCTTCATCGGCAGTGAACAG+AGG 0.690278 2_2:-15793674 None:intergenic
AACCGCCACCAAATCCGATG+TGG 0.694040 2_2:-15794657 None:intergenic
TGTTGCGATGAACAATCCAA+CGG 0.695987 2_2:+15794027 Msa0240540:CDS
AGGTAAACAAAGGGAAGACG+GGG 0.704588 2_2:+15794630 Msa0240540:CDS
TGTGCGGATTCAATCAAATG+GGG 0.705308 2_2:+15794598 Msa0240540:CDS
GAGAATTCTGACTTTCCCGG+CGG 0.726321 2_2:-15793462 None:intergenic
GAAGACGGGGAAAACCACAT+CGG 0.743605 2_2:+15794643 Msa0240540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGAAATAATTATAATGT+AGG - chr2_2:15795132-15795151 None:intergenic 10.0%
!! AAATGAAATAATTATAATGT+AGG - chr2_2:15795132-15795151 None:intergenic 10.0%
!! AAAATAATTCGAAATTGAAT+CGG + chr2_2:15794340-15794359 Msa0240540:intron 15.0%
!! ATGAATGAATATTATAATGT+AGG + chr2_2:15794526-15794545 Msa0240540:intron 15.0%
!!! TAAAAATTAGATTTTGTTGT+GGG + chr2_2:15794974-15794993 Msa0240540:three_prime_UTR 15.0%
!!! TTTTTATCTTTGTTTAGTTT+TGG + chr2_2:15795154-15795173 Msa0240540:three_prime_UTR 15.0%
!! AAAATAATTCGAAATTGAAT+CGG + chr2_2:15794340-15794359 Msa0240540:intron 15.0%
!! ATGAATGAATATTATAATGT+AGG + chr2_2:15794526-15794545 Msa0240540:intron 15.0%
!!! TAAAAATTAGATTTTGTTGT+GGG + chr2_2:15794974-15794993 Msa0240540:three_prime_UTR 15.0%
!!! TTTTTATCTTTGTTTAGTTT+TGG + chr2_2:15795154-15795173 Msa0240540:three_prime_UTR 15.0%
!!! TAAGAATTTGTTTTCCAAAA+TGG - chr2_2:15793375-15793394 None:intergenic 20.0%
!! TTGGAAAACAAATTCTTATT+CGG + chr2_2:15793377-15793396 Msa0240540:CDS 20.0%
!!! GAATTTTTTTCTTACCATAT+CGG - chr2_2:15794209-15794228 None:intergenic 20.0%
!! TTAGACAAATTGAAATTGTT+TGG + chr2_2:15794755-15794774 Msa0240540:CDS 20.0%
!!! CTAAAAATTAGATTTTGTTG+TGG + chr2_2:15794973-15794992 Msa0240540:three_prime_UTR 20.0%
!! GAAATAATTATAATGTAGGT+AGG - chr2_2:15795128-15795147 None:intergenic 20.0%
!!! TAAGAATTTGTTTTCCAAAA+TGG - chr2_2:15793375-15793394 None:intergenic 20.0%
!! TTGGAAAACAAATTCTTATT+CGG + chr2_2:15793377-15793396 Msa0240540:CDS 20.0%
!!! GAATTTTTTTCTTACCATAT+CGG - chr2_2:15794209-15794228 None:intergenic 20.0%
!! TTAGACAAATTGAAATTGTT+TGG + chr2_2:15794755-15794774 Msa0240540:CDS 20.0%
!!! CTAAAAATTAGATTTTGTTG+TGG + chr2_2:15794973-15794992 Msa0240540:three_prime_UTR 20.0%
!! GAAATAATTATAATGTAGGT+AGG - chr2_2:15795128-15795147 None:intergenic 20.0%
! AATATGAGAGTTATTGTTAC+CGG - chr2_2:15793570-15793589 None:intergenic 25.0%
!!! AGAATGTGTTTGTTTTTGTT+AGG - chr2_2:15794402-15794421 None:intergenic 25.0%
! ATTTGTAGTGAATAATGAGT+AGG + chr2_2:15794450-15794469 Msa0240540:intron 25.0%
! TAATGAGTAGGTCTAATTAT+TGG + chr2_2:15794462-15794481 Msa0240540:intron 25.0%
! AAGAAGACAAAAAAGAAAAG+AGG + chr2_2:15794930-15794949 Msa0240540:three_prime_UTR 25.0%
!!! TTTTGAAACTTAATGTCTTG+TGG + chr2_2:15795022-15795041 Msa0240540:three_prime_UTR 25.0%
!!! TGATAGTGATTTGTTCATAT+GGG + chr2_2:15795198-15795217 Msa0240540:three_prime_UTR 25.0%
!! GTGTATTGAAACATTGATTA+TGG + chr2_2:15795312-15795331 Msa0240540:three_prime_UTR 25.0%
! AATATGAGAGTTATTGTTAC+CGG - chr2_2:15793570-15793589 None:intergenic 25.0%
!!! AGAATGTGTTTGTTTTTGTT+AGG - chr2_2:15794402-15794421 None:intergenic 25.0%
! ATTTGTAGTGAATAATGAGT+AGG + chr2_2:15794450-15794469 Msa0240540:intron 25.0%
! TAATGAGTAGGTCTAATTAT+TGG + chr2_2:15794462-15794481 Msa0240540:intron 25.0%
! AAGAAGACAAAAAAGAAAAG+AGG + chr2_2:15794930-15794949 Msa0240540:three_prime_UTR 25.0%
!!! TTTTGAAACTTAATGTCTTG+TGG + chr2_2:15795022-15795041 Msa0240540:three_prime_UTR 25.0%
!!! TGATAGTGATTTGTTCATAT+GGG + chr2_2:15795198-15795217 Msa0240540:three_prime_UTR 25.0%
!! GTGTATTGAAACATTGATTA+TGG + chr2_2:15795312-15795331 Msa0240540:three_prime_UTR 25.0%
CAACTCAAATTGCAGAAAAA+TGG + chr2_2:15793253-15793272 Msa0240540:exon 30.0%
!! TTCAAGTTGTTGTTGAACAT+TGG - chr2_2:15793296-15793315 None:intergenic 30.0%
! TTTTTCACCGGAAACAAAAT+CGG + chr2_2:15793760-15793779 Msa0240540:CDS 30.0%
! AAGCTTTTCCGAAAAACATT+CGG + chr2_2:15793785-15793804 Msa0240540:CDS 30.0%
ATAATTCGAAATTGAATCGG+TGG + chr2_2:15794343-15794362 Msa0240540:intron 30.0%
GTAGATTGAACAATTATGTG+CGG + chr2_2:15794582-15794601 Msa0240540:CDS 30.0%
!! GTTGAGTCAGTCTTATTTAA+AGG + chr2_2:15794707-15794726 Msa0240540:CDS 30.0%
!! AGTCAGTCTTATTTAAAGGA+AGG + chr2_2:15794711-15794730 Msa0240540:CDS 30.0%
GACAAATTGAAATTGTTTGG+TGG + chr2_2:15794758-15794777 Msa0240540:CDS 30.0%
AAGAAAAGAGGAAGATTAGT+AGG + chr2_2:15794942-15794961 Msa0240540:three_prime_UTR 30.0%
! AACTTAATGTCTTGTGGTTT+TGG + chr2_2:15795028-15795047 Msa0240540:three_prime_UTR 30.0%
! ACTTAATGTCTTGTGGTTTT+GGG + chr2_2:15795029-15795048 Msa0240540:three_prime_UTR 30.0%
GGTTGTAGTAATATTAAGGA+TGG - chr2_2:15795107-15795126 None:intergenic 30.0%
GGTAGGTTGTAGTAATATTA+AGG - chr2_2:15795111-15795130 None:intergenic 30.0%
!! GTGATAGTGATTTGTTCATA+TGG + chr2_2:15795197-15795216 Msa0240540:three_prime_UTR 30.0%
! TTCATATGGGTATTGTCAAA+AGG + chr2_2:15795211-15795230 Msa0240540:three_prime_UTR 30.0%
! CAAAAGGTGAATTTTGTACA+AGG + chr2_2:15795227-15795246 Msa0240540:three_prime_UTR 30.0%
CAACTCAAATTGCAGAAAAA+TGG + chr2_2:15793253-15793272 Msa0240540:exon 30.0%
!! TTCAAGTTGTTGTTGAACAT+TGG - chr2_2:15793296-15793315 None:intergenic 30.0%
! TTTTTCACCGGAAACAAAAT+CGG + chr2_2:15793760-15793779 Msa0240540:CDS 30.0%
! AAGCTTTTCCGAAAAACATT+CGG + chr2_2:15793785-15793804 Msa0240540:CDS 30.0%
ATAATTCGAAATTGAATCGG+TGG + chr2_2:15794343-15794362 Msa0240540:intron 30.0%
GTAGATTGAACAATTATGTG+CGG + chr2_2:15794582-15794601 Msa0240540:CDS 30.0%
!! GTTGAGTCAGTCTTATTTAA+AGG + chr2_2:15794707-15794726 Msa0240540:CDS 30.0%
!! AGTCAGTCTTATTTAAAGGA+AGG + chr2_2:15794711-15794730 Msa0240540:CDS 30.0%
GACAAATTGAAATTGTTTGG+TGG + chr2_2:15794758-15794777 Msa0240540:CDS 30.0%
AAGAAAAGAGGAAGATTAGT+AGG + chr2_2:15794942-15794961 Msa0240540:three_prime_UTR 30.0%
! AACTTAATGTCTTGTGGTTT+TGG + chr2_2:15795028-15795047 Msa0240540:three_prime_UTR 30.0%
! ACTTAATGTCTTGTGGTTTT+GGG + chr2_2:15795029-15795048 Msa0240540:three_prime_UTR 30.0%
GGTTGTAGTAATATTAAGGA+TGG - chr2_2:15795107-15795126 None:intergenic 30.0%
GGTAGGTTGTAGTAATATTA+AGG - chr2_2:15795111-15795130 None:intergenic 30.0%
!! GTGATAGTGATTTGTTCATA+TGG + chr2_2:15795197-15795216 Msa0240540:three_prime_UTR 30.0%
! TTCATATGGGTATTGTCAAA+AGG + chr2_2:15795211-15795230 Msa0240540:three_prime_UTR 30.0%
! CAAAAGGTGAATTTTGTACA+AGG + chr2_2:15795227-15795246 Msa0240540:three_prime_UTR 30.0%
!! TGTGTGTTGGTTGTTGAAAA+TGG - chr2_2:15793181-15793200 None:intergenic 35.0%
GAAAGAGAGAATTTGTGTGT+TGG - chr2_2:15793194-15793213 None:intergenic 35.0%
CTCAAATTGCAGAAAAATGG+CGG + chr2_2:15793256-15793275 Msa0240540:exon 35.0%
GAGTTTATCAACTTCGAAGT+TGG - chr2_2:15793336-15793355 None:intergenic 35.0%
CAAAATGGAGAAGATTTCGT+AGG - chr2_2:15793360-15793379 None:intergenic 35.0%
! CTACGAAATCTTCTCCATTT+TGG + chr2_2:15793358-15793377 Msa0240540:CDS 35.0%
! AAGCGAATTCTTCGCATTTT+CGG - chr2_2:15793414-15793433 None:intergenic 35.0%
CAGAAACTTCAAAGCTTCAT+CGG - chr2_2:15793690-15793709 None:intergenic 35.0%
! TGCATTCTCCGAATGTTTTT+CGG - chr2_2:15793796-15793815 None:intergenic 35.0%
TCGTAGCAGGGAATTAAAAT+CGG - chr2_2:15793839-15793858 None:intergenic 35.0%
! TCGATGGACTTCAATTCAAT+AGG - chr2_2:15793974-15793993 None:intergenic 35.0%
ATTGAATTGAAGTCCATCGA+TGG + chr2_2:15793974-15793993 Msa0240540:CDS 35.0%
TTGAATTGAAGTCCATCGAT+GGG + chr2_2:15793975-15793994 Msa0240540:CDS 35.0%
! CATGAGTTTCCGTTTTGTAA+CGG + chr2_2:15794082-15794101 Msa0240540:CDS 35.0%
TCAGAAACACCGTTACAAAA+CGG - chr2_2:15794094-15794113 None:intergenic 35.0%
! TAACGGTGTTTCTGATTTGT+TGG + chr2_2:15794099-15794118 Msa0240540:CDS 35.0%
TATGTGCGGATTCAATCAAA+TGG + chr2_2:15794596-15794615 Msa0240540:CDS 35.0%
ATGTGCGGATTCAATCAAAT+GGG + chr2_2:15794597-15794616 Msa0240540:CDS 35.0%
TGATGGCTAAGGTAAACAAA+GGG + chr2_2:15794621-15794640 Msa0240540:CDS 35.0%
TAAGGTAAACAAAGGGAAGA+CGG + chr2_2:15794628-15794647 Msa0240540:CDS 35.0%
ATTTAAAGGAAGGAAGATCG+TGG + chr2_2:15794721-15794740 Msa0240540:CDS 35.0%
AGTTGATTAAGGAAGAAGAG+AGG + chr2_2:15794783-15794802 Msa0240540:CDS 35.0%
CTTTCTTAATCGATCTCAAG+CGG - chr2_2:15795062-15795081 None:intergenic 35.0%
!! TGTGTGTTGGTTGTTGAAAA+TGG - chr2_2:15793181-15793200 None:intergenic 35.0%
GAAAGAGAGAATTTGTGTGT+TGG - chr2_2:15793194-15793213 None:intergenic 35.0%
CTCAAATTGCAGAAAAATGG+CGG + chr2_2:15793256-15793275 Msa0240540:exon 35.0%
GAGTTTATCAACTTCGAAGT+TGG - chr2_2:15793336-15793355 None:intergenic 35.0%
CAAAATGGAGAAGATTTCGT+AGG - chr2_2:15793360-15793379 None:intergenic 35.0%
! CTACGAAATCTTCTCCATTT+TGG + chr2_2:15793358-15793377 Msa0240540:CDS 35.0%
! AAGCGAATTCTTCGCATTTT+CGG - chr2_2:15793414-15793433 None:intergenic 35.0%
CAGAAACTTCAAAGCTTCAT+CGG - chr2_2:15793690-15793709 None:intergenic 35.0%
! TGCATTCTCCGAATGTTTTT+CGG - chr2_2:15793796-15793815 None:intergenic 35.0%
TCGTAGCAGGGAATTAAAAT+CGG - chr2_2:15793839-15793858 None:intergenic 35.0%
! TCGATGGACTTCAATTCAAT+AGG - chr2_2:15793974-15793993 None:intergenic 35.0%
ATTGAATTGAAGTCCATCGA+TGG + chr2_2:15793974-15793993 Msa0240540:CDS 35.0%
TTGAATTGAAGTCCATCGAT+GGG + chr2_2:15793975-15793994 Msa0240540:CDS 35.0%
! CATGAGTTTCCGTTTTGTAA+CGG + chr2_2:15794082-15794101 Msa0240540:CDS 35.0%
TCAGAAACACCGTTACAAAA+CGG - chr2_2:15794094-15794113 None:intergenic 35.0%
! TAACGGTGTTTCTGATTTGT+TGG + chr2_2:15794099-15794118 Msa0240540:CDS 35.0%
TATGTGCGGATTCAATCAAA+TGG + chr2_2:15794596-15794615 Msa0240540:CDS 35.0%
ATGTGCGGATTCAATCAAAT+GGG + chr2_2:15794597-15794616 Msa0240540:CDS 35.0%
TGATGGCTAAGGTAAACAAA+GGG + chr2_2:15794621-15794640 Msa0240540:CDS 35.0%
TAAGGTAAACAAAGGGAAGA+CGG + chr2_2:15794628-15794647 Msa0240540:CDS 35.0%
ATTTAAAGGAAGGAAGATCG+TGG + chr2_2:15794721-15794740 Msa0240540:CDS 35.0%
AGTTGATTAAGGAAGAAGAG+AGG + chr2_2:15794783-15794802 Msa0240540:CDS 35.0%
CTTTCTTAATCGATCTCAAG+CGG - chr2_2:15795062-15795081 None:intergenic 35.0%
!! ATTCTTCGCATTTTCGGTGT+CGG - chr2_2:15793408-15793427 None:intergenic 40.0%
GTCAGAATTCTCTGCATTGA+CGG + chr2_2:15793473-15793492 Msa0240540:CDS 40.0%
AAGGTGAGATAGTGATTTCG+CGG - chr2_2:15793525-15793544 None:intergenic 40.0%
ATCGTCGCGAAATTCTGTTA+CGG - chr2_2:15793721-15793740 None:intergenic 40.0%
TAACAGAATTTCGCGACGAT+CGG + chr2_2:15793721-15793740 Msa0240540:CDS 40.0%
!! AGCTTCTCCGATTTTGTTTC+CGG - chr2_2:15793770-15793789 None:intergenic 40.0%
TGTTGCGATGAACAATCCAA+CGG + chr2_2:15794027-15794046 Msa0240540:CDS 40.0%
!! GATTTGTTGGTGCTTTCTCT+TGG + chr2_2:15794112-15794131 Msa0240540:CDS 40.0%
! TTGGTGCTTTCTCTTGGTAA+CGG + chr2_2:15794118-15794137 Msa0240540:CDS 40.0%
TGAATCGGTGGTTACTAGTT+AGG + chr2_2:15794355-15794374 Msa0240540:intron 40.0%
GGTTGATCAAGCTGTATCAA+TGG + chr2_2:15794547-15794566 Msa0240540:intron 40.0%
CAAGCTGTATCAATGGCATT+TGG + chr2_2:15794554-15794573 Msa0240540:CDS 40.0%
TGTGCGGATTCAATCAAATG+GGG + chr2_2:15794598-15794617 Msa0240540:CDS 40.0%
GATTCAATCAAATGGGGTGA+TGG + chr2_2:15794604-15794623 Msa0240540:CDS 40.0%
GTGATGGCTAAGGTAAACAA+AGG + chr2_2:15794620-15794639 Msa0240540:CDS 40.0%
AAGGTAAACAAAGGGAAGAC+GGG + chr2_2:15794629-15794648 Msa0240540:CDS 40.0%
! GTTTGGTGGAGAGTTGATTA+AGG + chr2_2:15794772-15794791 Msa0240540:CDS 40.0%
CCATTCTTCAACACAACAGT+TGG - chr2_2:15794827-15794846 None:intergenic 40.0%
CCAACTGTTGTGTTGAAGAA+TGG + chr2_2:15794824-15794843 Msa0240540:CDS 40.0%
TCCTAGGAGATGAAGTTCTA+GGG - chr2_2:15794859-15794878 None:intergenic 40.0%
!! ATTCTTCGCATTTTCGGTGT+CGG - chr2_2:15793408-15793427 None:intergenic 40.0%
GTCAGAATTCTCTGCATTGA+CGG + chr2_2:15793473-15793492 Msa0240540:CDS 40.0%
AAGGTGAGATAGTGATTTCG+CGG - chr2_2:15793525-15793544 None:intergenic 40.0%
ATCGTCGCGAAATTCTGTTA+CGG - chr2_2:15793721-15793740 None:intergenic 40.0%
TAACAGAATTTCGCGACGAT+CGG + chr2_2:15793721-15793740 Msa0240540:CDS 40.0%
!! AGCTTCTCCGATTTTGTTTC+CGG - chr2_2:15793770-15793789 None:intergenic 40.0%
TGTTGCGATGAACAATCCAA+CGG + chr2_2:15794027-15794046 Msa0240540:CDS 40.0%
!! GATTTGTTGGTGCTTTCTCT+TGG + chr2_2:15794112-15794131 Msa0240540:CDS 40.0%
! TTGGTGCTTTCTCTTGGTAA+CGG + chr2_2:15794118-15794137 Msa0240540:CDS 40.0%
TGAATCGGTGGTTACTAGTT+AGG + chr2_2:15794355-15794374 Msa0240540:intron 40.0%
GGTTGATCAAGCTGTATCAA+TGG + chr2_2:15794547-15794566 Msa0240540:intron 40.0%
CAAGCTGTATCAATGGCATT+TGG + chr2_2:15794554-15794573 Msa0240540:CDS 40.0%
TGTGCGGATTCAATCAAATG+GGG + chr2_2:15794598-15794617 Msa0240540:CDS 40.0%
GATTCAATCAAATGGGGTGA+TGG + chr2_2:15794604-15794623 Msa0240540:CDS 40.0%
GTGATGGCTAAGGTAAACAA+AGG + chr2_2:15794620-15794639 Msa0240540:CDS 40.0%
AAGGTAAACAAAGGGAAGAC+GGG + chr2_2:15794629-15794648 Msa0240540:CDS 40.0%
! GTTTGGTGGAGAGTTGATTA+AGG + chr2_2:15794772-15794791 Msa0240540:CDS 40.0%
CCATTCTTCAACACAACAGT+TGG - chr2_2:15794827-15794846 None:intergenic 40.0%
CCAACTGTTGTGTTGAAGAA+TGG + chr2_2:15794824-15794843 Msa0240540:CDS 40.0%
TCCTAGGAGATGAAGTTCTA+GGG - chr2_2:15794859-15794878 None:intergenic 40.0%
GCAGAGAATTCTGACTTTCC+CGG - chr2_2:15793468-15793487 None:intergenic 45.0%
TGTTACCGGATTTACGTCTG+AGG - chr2_2:15793556-15793575 None:intergenic 45.0%
! CTTTTCACCCGTGGAAAAGA+CGG + chr2_2:15793647-15793666 Msa0240540:CDS 45.0%
AACAGAATTTCGCGACGATC+GGG + chr2_2:15793722-15793741 Msa0240540:CDS 45.0%
TTTCCGGTGAAAAAACTCGC+CGG - chr2_2:15793754-15793773 None:intergenic 45.0%
TTCAATTCAATAGGAGCCGC+TGG - chr2_2:15793965-15793984 None:intergenic 45.0%
ACGAAGATCTTAGCCGTTGA+TGG + chr2_2:15794001-15794020 Msa0240540:CDS 45.0%
! AAGATCTTAGCCGTTGATGG+AGG + chr2_2:15794004-15794023 Msa0240540:CDS 45.0%
!! TTCTCTTGGTAACGGAGAGT+TGG + chr2_2:15794126-15794145 Msa0240540:CDS 45.0%
GAAACCTGAGGGAGACTTAA+CGG - chr2_2:15794161-15794180 None:intergenic 45.0%
GCAATTCTCACGAAACCTGA+GGG - chr2_2:15794172-15794191 None:intergenic 45.0%
TCAGGTTTCGTGAGAATTGC+CGG + chr2_2:15794172-15794191 Msa0240540:CDS 45.0%
! ATCAAATGGGGTGATGGCTA+AGG + chr2_2:15794610-15794629 Msa0240540:CDS 45.0%
AGGTAAACAAAGGGAAGACG+GGG + chr2_2:15794630-15794649 Msa0240540:CDS 45.0%
GAAAACCACATCGGATTTGG+TGG + chr2_2:15794652-15794671 Msa0240540:CDS 45.0%
! CCTAGGAGATGAAGTTCTAG+GGG - chr2_2:15794858-15794877 None:intergenic 45.0%
GTCCTAGGAGATGAAGTTCT+AGG - chr2_2:15794860-15794879 None:intergenic 45.0%
GTAGTAGCTGATGAAGTCCT+AGG - chr2_2:15794875-15794894 None:intergenic 45.0%
GCAGAGAATTCTGACTTTCC+CGG - chr2_2:15793468-15793487 None:intergenic 45.0%
TGTTACCGGATTTACGTCTG+AGG - chr2_2:15793556-15793575 None:intergenic 45.0%
! CTTTTCACCCGTGGAAAAGA+CGG + chr2_2:15793647-15793666 Msa0240540:CDS 45.0%
AACAGAATTTCGCGACGATC+GGG + chr2_2:15793722-15793741 Msa0240540:CDS 45.0%
TTTCCGGTGAAAAAACTCGC+CGG - chr2_2:15793754-15793773 None:intergenic 45.0%
TTCAATTCAATAGGAGCCGC+TGG - chr2_2:15793965-15793984 None:intergenic 45.0%
ACGAAGATCTTAGCCGTTGA+TGG + chr2_2:15794001-15794020 Msa0240540:CDS 45.0%
! AAGATCTTAGCCGTTGATGG+AGG + chr2_2:15794004-15794023 Msa0240540:CDS 45.0%
!! TTCTCTTGGTAACGGAGAGT+TGG + chr2_2:15794126-15794145 Msa0240540:CDS 45.0%
GAAACCTGAGGGAGACTTAA+CGG - chr2_2:15794161-15794180 None:intergenic 45.0%
GCAATTCTCACGAAACCTGA+GGG - chr2_2:15794172-15794191 None:intergenic 45.0%
TCAGGTTTCGTGAGAATTGC+CGG + chr2_2:15794172-15794191 Msa0240540:CDS 45.0%
! ATCAAATGGGGTGATGGCTA+AGG + chr2_2:15794610-15794629 Msa0240540:CDS 45.0%
AGGTAAACAAAGGGAAGACG+GGG + chr2_2:15794630-15794649 Msa0240540:CDS 45.0%
GAAAACCACATCGGATTTGG+TGG + chr2_2:15794652-15794671 Msa0240540:CDS 45.0%
! CCTAGGAGATGAAGTTCTAG+GGG - chr2_2:15794858-15794877 None:intergenic 45.0%
GTCCTAGGAGATGAAGTTCT+AGG - chr2_2:15794860-15794879 None:intergenic 45.0%
GTAGTAGCTGATGAAGTCCT+AGG - chr2_2:15794875-15794894 None:intergenic 45.0%
AAACAAGCCAAAAACGCCGC+CGG + chr2_2:15793446-15793465 Msa0240540:CDS 50.0%
GAGAATTCTGACTTTCCCGG+CGG - chr2_2:15793465-15793484 None:intergenic 50.0%
! TACGTCTGAGGCAGGATTCA+AGG - chr2_2:15793544-15793563 None:intergenic 50.0%
TCCTGCCTCAGACGTAAATC+CGG + chr2_2:15793548-15793567 Msa0240540:CDS 50.0%
! CGTCTTTTCCACGGGTGAAA+AGG - chr2_2:15793649-15793668 None:intergenic 50.0%
! AGGTAGTCCGTCTTTTCCAC+GGG - chr2_2:15793657-15793676 None:intergenic 50.0%
! GAGGTAGTCCGTCTTTTCCA+CGG - chr2_2:15793658-15793677 None:intergenic 50.0%
ACAGAATTTCGCGACGATCG+GGG + chr2_2:15793723-15793742 Msa0240540:CDS 50.0%
!!! TCTCCGGCGAGTTTTTTCAC+CGG + chr2_2:15793748-15793767 Msa0240540:CDS 50.0%
GATCTTCGTCTTCCCATCGA+TGG - chr2_2:15793990-15794009 None:intergenic 50.0%
CATCGCAACACCTCCATCAA+CGG - chr2_2:15794017-15794036 None:intergenic 50.0%
TGAGTAACAGCAGTAGCCGT+TGG - chr2_2:15794046-15794065 None:intergenic 50.0%
GGCAATTCTCACGAAACCTG+AGG - chr2_2:15794173-15794192 None:intergenic 50.0%
TTCGTGAGAATTGCCGGTGA+AGG + chr2_2:15794178-15794197 Msa0240540:CDS 50.0%
CATATCGGAAGCTCCTTCAC+CGG - chr2_2:15794194-15794213 None:intergenic 50.0%
GAAGACGGGGAAAACCACAT+CGG + chr2_2:15794643-15794662 Msa0240540:CDS 50.0%
GGGGAAAACCACATCGGATT+TGG + chr2_2:15794649-15794668 Msa0240540:CDS 50.0%
!! AACCACATCGGATTTGGTGG+CGG + chr2_2:15794655-15794674 Msa0240540:CDS 50.0%
!! ATCGGATTTGGTGGCGGTTT+CGG + chr2_2:15794661-15794680 Msa0240540:CDS 50.0%
!! GGAGATGAAGTTCTAGGGGA+GGG - chr2_2:15794854-15794873 None:intergenic 50.0%
!! AGGAGATGAAGTTCTAGGGG+AGG - chr2_2:15794855-15794874 None:intergenic 50.0%
CCCCTAGAACTTCATCTCCT+AGG + chr2_2:15794855-15794874 Msa0240540:CDS 50.0%
GGATTCAACACTGCACAGCT+TGG - chr2_2:15795086-15795105 None:intergenic 50.0%
AAACAAGCCAAAAACGCCGC+CGG + chr2_2:15793446-15793465 Msa0240540:CDS 50.0%
GAGAATTCTGACTTTCCCGG+CGG - chr2_2:15793465-15793484 None:intergenic 50.0%
! TACGTCTGAGGCAGGATTCA+AGG - chr2_2:15793544-15793563 None:intergenic 50.0%
TCCTGCCTCAGACGTAAATC+CGG + chr2_2:15793548-15793567 Msa0240540:CDS 50.0%
! CGTCTTTTCCACGGGTGAAA+AGG - chr2_2:15793649-15793668 None:intergenic 50.0%
! AGGTAGTCCGTCTTTTCCAC+GGG - chr2_2:15793657-15793676 None:intergenic 50.0%
! GAGGTAGTCCGTCTTTTCCA+CGG - chr2_2:15793658-15793677 None:intergenic 50.0%
ACAGAATTTCGCGACGATCG+GGG + chr2_2:15793723-15793742 Msa0240540:CDS 50.0%
!!! TCTCCGGCGAGTTTTTTCAC+CGG + chr2_2:15793748-15793767 Msa0240540:CDS 50.0%
GATCTTCGTCTTCCCATCGA+TGG - chr2_2:15793990-15794009 None:intergenic 50.0%
CATCGCAACACCTCCATCAA+CGG - chr2_2:15794017-15794036 None:intergenic 50.0%
TGAGTAACAGCAGTAGCCGT+TGG - chr2_2:15794046-15794065 None:intergenic 50.0%
GGCAATTCTCACGAAACCTG+AGG - chr2_2:15794173-15794192 None:intergenic 50.0%
TTCGTGAGAATTGCCGGTGA+AGG + chr2_2:15794178-15794197 Msa0240540:CDS 50.0%
CATATCGGAAGCTCCTTCAC+CGG - chr2_2:15794194-15794213 None:intergenic 50.0%
GAAGACGGGGAAAACCACAT+CGG + chr2_2:15794643-15794662 Msa0240540:CDS 50.0%
GGGGAAAACCACATCGGATT+TGG + chr2_2:15794649-15794668 Msa0240540:CDS 50.0%
!! AACCACATCGGATTTGGTGG+CGG + chr2_2:15794655-15794674 Msa0240540:CDS 50.0%
!! ATCGGATTTGGTGGCGGTTT+CGG + chr2_2:15794661-15794680 Msa0240540:CDS 50.0%
!! GGAGATGAAGTTCTAGGGGA+GGG - chr2_2:15794854-15794873 None:intergenic 50.0%
!! AGGAGATGAAGTTCTAGGGG+AGG - chr2_2:15794855-15794874 None:intergenic 50.0%
CCCCTAGAACTTCATCTCCT+AGG + chr2_2:15794855-15794874 Msa0240540:CDS 50.0%
GGATTCAACACTGCACAGCT+TGG - chr2_2:15795086-15795105 None:intergenic 50.0%
AACAAGCCAAAAACGCCGCC+GGG + chr2_2:15793447-15793466 Msa0240540:CDS 55.0%
! ATTCTCTGCATTGACGGCGC+CGG + chr2_2:15793479-15793498 Msa0240540:CDS 55.0%
GAGATAGTGATTTCGCGGCG+AGG - chr2_2:15793520-15793539 None:intergenic 55.0%
! ACCGGATTTACGTCTGAGGC+AGG - chr2_2:15793552-15793571 None:intergenic 55.0%
!!! GATTTTTTCGACGCCGTCGC+CGG + chr2_2:15793593-15793612 Msa0240540:CDS 55.0%
GCTTCATCGGCAGTGAACAG+AGG - chr2_2:15793677-15793696 None:intergenic 55.0%
!! ACCGTCGATTTCGAGAGCGT+CGG - chr2_2:15793897-15793916 None:intergenic 55.0%
AACGCCGTTAAGTCTCCCTC+AGG + chr2_2:15794154-15794173 Msa0240540:CDS 55.0%
CGGTGAAGGAGCTTCCGATA+TGG + chr2_2:15794192-15794211 Msa0240540:CDS 55.0%
AACCGCCACCAAATCCGATG+TGG - chr2_2:15794660-15794679 None:intergenic 55.0%
AACAAGCCAAAAACGCCGCC+GGG + chr2_2:15793447-15793466 Msa0240540:CDS 55.0%
! ATTCTCTGCATTGACGGCGC+CGG + chr2_2:15793479-15793498 Msa0240540:CDS 55.0%
GAGATAGTGATTTCGCGGCG+AGG - chr2_2:15793520-15793539 None:intergenic 55.0%
! ACCGGATTTACGTCTGAGGC+AGG - chr2_2:15793552-15793571 None:intergenic 55.0%
!!! GATTTTTTCGACGCCGTCGC+CGG + chr2_2:15793593-15793612 Msa0240540:CDS 55.0%
GCTTCATCGGCAGTGAACAG+AGG - chr2_2:15793677-15793696 None:intergenic 55.0%
!! ACCGTCGATTTCGAGAGCGT+CGG - chr2_2:15793897-15793916 None:intergenic 55.0%
AACGCCGTTAAGTCTCCCTC+AGG + chr2_2:15794154-15794173 Msa0240540:CDS 55.0%
CGGTGAAGGAGCTTCCGATA+TGG + chr2_2:15794192-15794211 Msa0240540:CDS 55.0%
AACCGCCACCAAATCCGATG+TGG - chr2_2:15794660-15794679 None:intergenic 55.0%
! GACTTTCCCGGCGGCGTTTT+TGG - chr2_2:15793456-15793475 None:intergenic 60.0%
GAGGATGCCGTCGGTGTAAC+CGG - chr2_2:15793501-15793520 None:intergenic 60.0%
AGCGAGAACACCACCGACAC+CGG - chr2_2:15793621-15793640 None:intergenic 60.0%
! GCTGCACTCCTTTTCACCCG+TGG + chr2_2:15793638-15793657 Msa0240540:CDS 60.0%
CGCGTGACGAGATCGTAGCA+GGG - chr2_2:15793851-15793870 None:intergenic 60.0%
TCGGCGCGGGAGAAAACGAA+CGG - chr2_2:15793878-15793897 None:intergenic 60.0%
GCCGACGCTCTCGAAATCGA+CGG + chr2_2:15793893-15793912 Msa0240540:CDS 60.0%
TGCCACGTCAGCTGATCCAG+CGG + chr2_2:15793946-15793965 Msa0240540:CDS 60.0%
!! GGATTTGGTGGCGGTTTCGG+AGG + chr2_2:15794664-15794683 Msa0240540:CDS 60.0%
GGCGGTTTCGGAGGAGATGT+TGG + chr2_2:15794673-15794692 Msa0240540:CDS 60.0%
! GACTTTCCCGGCGGCGTTTT+TGG - chr2_2:15793456-15793475 None:intergenic 60.0%
GAGGATGCCGTCGGTGTAAC+CGG - chr2_2:15793501-15793520 None:intergenic 60.0%
AGCGAGAACACCACCGACAC+CGG - chr2_2:15793621-15793640 None:intergenic 60.0%
! GCTGCACTCCTTTTCACCCG+TGG + chr2_2:15793638-15793657 Msa0240540:CDS 60.0%
CGCGTGACGAGATCGTAGCA+GGG - chr2_2:15793851-15793870 None:intergenic 60.0%
TCGGCGCGGGAGAAAACGAA+CGG - chr2_2:15793878-15793897 None:intergenic 60.0%
GCCGACGCTCTCGAAATCGA+CGG + chr2_2:15793893-15793912 Msa0240540:CDS 60.0%
TGCCACGTCAGCTGATCCAG+CGG + chr2_2:15793946-15793965 Msa0240540:CDS 60.0%
!! GGATTTGGTGGCGGTTTCGG+AGG + chr2_2:15794664-15794683 Msa0240540:CDS 60.0%
GGCGGTTTCGGAGGAGATGT+TGG + chr2_2:15794673-15794692 Msa0240540:CDS 60.0%
TTTCGCGGCGAGGATGCCGT+CGG - chr2_2:15793510-15793529 None:intergenic 65.0%
AACACCACCGACACCGGAGC+CGG - chr2_2:15793615-15793634 None:intergenic 65.0%
CGCGACGATCGGGGATTCTC+CGG + chr2_2:15793732-15793751 Msa0240540:CDS 65.0%
GCGCGTGACGAGATCGTAGC+AGG - chr2_2:15793852-15793871 None:intergenic 65.0%
!! GATTTCGAGAGCGTCGGCGC+GGG - chr2_2:15793891-15793910 None:intergenic 65.0%
!! CGATTTCGAGAGCGTCGGCG+CGG - chr2_2:15793892-15793911 None:intergenic 65.0%
AGCCGCTGGATCAGCTGACG+TGG - chr2_2:15793951-15793970 None:intergenic 65.0%
TTTCGCGGCGAGGATGCCGT+CGG - chr2_2:15793510-15793529 None:intergenic 65.0%
AACACCACCGACACCGGAGC+CGG - chr2_2:15793615-15793634 None:intergenic 65.0%
CGCGACGATCGGGGATTCTC+CGG + chr2_2:15793732-15793751 Msa0240540:CDS 65.0%
GCGCGTGACGAGATCGTAGC+AGG - chr2_2:15793852-15793871 None:intergenic 65.0%
!! GATTTCGAGAGCGTCGGCGC+GGG - chr2_2:15793891-15793910 None:intergenic 65.0%
!! CGATTTCGAGAGCGTCGGCG+CGG - chr2_2:15793892-15793911 None:intergenic 65.0%
AGCCGCTGGATCAGCTGACG+TGG - chr2_2:15793951-15793970 None:intergenic 65.0%
!! GACGGCGCCGGTTACACCGA+CGG + chr2_2:15793491-15793510 Msa0240540:CDS 70.0%
!! GACGGCGCCGGTTACACCGA+CGG + chr2_2:15793491-15793510 Msa0240540:CDS 70.0%
!! TTCGACGCCGTCGCCGGCTC+CGG + chr2_2:15793599-15793618 Msa0240540:CDS 75.0%
ACCGACACCGGAGCCGGCGA+CGG - chr2_2:15793609-15793628 None:intergenic 75.0%
!! TTCGACGCCGTCGCCGGCTC+CGG + chr2_2:15793599-15793618 Msa0240540:CDS 75.0%
ACCGACACCGGAGCCGGCGA+CGG - chr2_2:15793609-15793628 None:intergenic 75.0%
!!! GCCGTCGCCGGCTCCGGTGT+CGG + chr2_2:15793605-15793624 Msa0240540:CDS 80.0%
!!! GTCGCCGGCTCCGGTGTCGG+TGG + chr2_2:15793608-15793627 Msa0240540:CDS 80.0%
!!! GCCGTCGCCGGCTCCGGTGT+CGG + chr2_2:15793605-15793624 Msa0240540:CDS 80.0%
!!! GTCGCCGGCTCCGGTGTCGG+TGG + chr2_2:15793608-15793627 Msa0240540:CDS 80.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 15793162 15795360 15793162 ID=Msa0240540;Name=Msa0240540
chr2_2 mRNA 15793162 15795360 15793162 ID=Msa0240540-mRNA-1;Parent=Msa0240540;Name=Msa0240540-mRNA-1;_AED=0.00;_eAED=0.00;_QI=110|1|1|1|1|1|2|438|438
chr2_2 exon 15793162 15794213 15793162 ID=Msa0240540-mRNA-1:exon:6481;Parent=Msa0240540-mRNA-1
chr2_2 exon 15794548 15795360 15794548 ID=Msa0240540-mRNA-1:exon:6482;Parent=Msa0240540-mRNA-1
chr2_2 five_prime_UTR 15793162 15793271 15793162 ID=Msa0240540-mRNA-1:five_prime_utr;Parent=Msa0240540-mRNA-1
chr2_2 CDS 15793272 15794213 15793272 ID=Msa0240540-mRNA-1:cds;Parent=Msa0240540-mRNA-1
chr2_2 CDS 15794548 15794922 15794548 ID=Msa0240540-mRNA-1:cds;Parent=Msa0240540-mRNA-1
chr2_2 three_prime_UTR 15794923 15795360 15794923 ID=Msa0240540-mRNA-1:three_prime_utr;Parent=Msa0240540-mRNA-1
Gene Sequence

>Msa0240540

ATGGCGGCACTGTCAACATCACCAATGTTCAACAACAACTTGAACTTGAACACAATTGACACCAACTTCGAAGTTGATAAACTCACCTACGAAATCTTCTCCATTTTGGAAAACAAATTCTTATTCGGATACACCGACACCGAAAATGCGAAGAATTCGCTTTCGATTGATGTCAAACAAGCCAAAAACGCCGCCGGGAAAGTCAGAATTCTCTGCATTGACGGCGCCGGTTACACCGACGGCATCCTCGCCGCGAAATCACTATCTCACCTTGAATCCTGCCTCAGACGTAAATCCGGTAACAATAACTCTCATATTGCTGATTTTTTCGACGCCGTCGCCGGCTCCGGTGTCGGTGGTGTTCTCGCTGCACTCCTTTTCACCCGTGGAAAAGACGGACTACCTCTGTTCACTGCCGATGAAGCTTTGAAGTTTCTGATCAACAACCGTAACAGAATTTCGCGACGATCGGGGATTCTCCGGCGAGTTTTTTCACCGGAAACAAAATCGGAGAAGCTTTTCCGAAAAACATTCGGAGAATGCACACTGAAAGACACATTGAAACCGATTTTAATTCCCTGCTACGATCTCGTCACGCGCGCACCGTTCGTTTTCTCCCGCGCCGACGCTCTCGAAATCGACGGTTACGATTTCAAGATGCGTGATGTCTGTGCTGCCACGTCAGCTGATCCAGCGGCTCCTATTGAATTGAAGTCCATCGATGGGAAGACGAAGATCTTAGCCGTTGATGGAGGTGTTGCGATGAACAATCCAACGGCTACTGCTGTTACTCACGTGCTTAATAATAAACATGAGTTTCCGTTTTGTAACGGTGTTTCTGATTTGTTGGTGCTTTCTCTTGGTAACGGAGAGTTGGACTTTAACGCCGTTAAGTCTCCCTCAGGTTTCGTGAGAATTGCCGGTGAAGGAGCTTCCGATATGGTTGATCAAGCTGTATCAATGGCATTTGGAGAATGTAGATTGAACAATTATGTGCGGATTCAATCAAATGGGGTGATGGCTAAGGTAAACAAAGGGAAGACGGGGAAAACCACATCGGATTTGGTGGCGGTTTCGGAGGAGATGTTGGCACAGAAGAATGTTGAGTCAGTCTTATTTAAAGGAAGGAAGATCGTGGAGAACACAAATTTAGACAAATTGAAATTGTTTGGTGGAGAGTTGATTAAGGAAGAAGAGAGGAGAAAAACTAGTATTTTACCAACTGTTGTGTTGAAGAATGGATCTCCCTCCCCTAGAACTTCATCTCCTAGGACTTCATCAGCTACTACTTTGTCAACTTCATCTTCAAGCTCTTAG

Protein sequence

>Msa0240540

MAALSTSPMFNNNLNLNTIDTNFEVDKLTYEIFSILENKFLFGYTDTENAKNSLSIDVKQAKNAAGKVRILCIDGAGYTDGILAAKSLSHLESCLRRKSGNNNSHIADFFDAVAGSGVGGVLAALLFTRGKDGLPLFTADEALKFLINNRNRISRRSGILRRVFSPETKSEKLFRKTFGECTLKDTLKPILIPCYDLVTRAPFVFSRADALEIDGYDFKMRDVCAATSADPAAPIELKSIDGKTKILAVDGGVAMNNPTATAVTHVLNNKHEFPFCNGVSDLLVLSLGNGELDFNAVKSPSGFVRIAGEGASDMVDQAVSMAFGECRLNNYVRIQSNGVMAKVNKGKTGKTTSDLVAVSEEMLAQKNVESVLFKGRKIVENTNLDKLKLFGGELIKEEERRKTSILPTVVLKNGSPSPRTSSPRTSSATTLSTSSSSS*