AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0719270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0719270 MtrunA17_Chr5g0409741 98.540 548 6 1 1 548 1 546 0.0 1090
Msa0719270 MtrunA17_Chr8g0369321 59.506 405 141 6 147 548 1 385 1.87e-158 457
Msa0719270 MtrunA17_Chr8g0369331 56.322 87 37 1 46 131 15 101 5.30e-31 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 141 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAGCTCTCCGGTGGTTTC+TGG 0.133359 5_1:+14312811 Msa0719270:CDS
AGAGAAAATAAGAAAGAAAA+AGG 0.179522 5_1:-14308564 None:intergenic
TGCTGAAAACTTTGAAATTA+TGG 0.208999 5_1:-14311633 None:intergenic
GGAATTGTTGTGTTGCTATT+TGG 0.217379 5_1:+14312730 Msa0719270:CDS
CCTTCTAGATTTGAAACTTT+TGG 0.246591 5_1:+14308806 Msa0719270:CDS
GCTACTGCTGCTGGTTGTTT+TGG 0.254307 5_1:+14311986 Msa0719270:CDS
GCCATAGCTGCACCAATTCT+TGG 0.258567 5_1:+14311692 Msa0719270:CDS
AGAGCGATATTATGAGTCTT+TGG 0.272001 5_1:+14312065 Msa0719270:CDS
TCGCTTCTGTCTTCAGGGTT+TGG 0.279277 5_1:+14312448 Msa0719270:CDS
TTTAATTTAAGTTGAGGATT+TGG 0.281047 5_1:+14313105 Msa0719270:three_prime_UTR
TTCAAATATCCTCATGCTAT+TGG 0.284045 5_1:+14312205 Msa0719270:CDS
GGATATTTGAAGATGGAAAA+AGG 0.290219 5_1:-14312193 None:intergenic
GCTGCAACTGTGATGAGTTT+TGG 0.299283 5_1:-14311746 None:intergenic
GTGGTTTAATTTGGCTTGTT+GGG 0.311746 5_1:+14312104 Msa0719270:CDS
AAGAAGGTGCTTTCTCTATA+TGG 0.325715 5_1:+14312599 Msa0719270:CDS
CCAAAAGTTTCAAATCTAGA+AGG 0.341466 5_1:-14308806 None:intergenic
TGCTTTCTTGAGAGTTGTTC+CGG 0.346386 5_1:-14311918 None:intergenic
ACGGACACAGTCACTGGAAA+TGG 0.347797 5_1:+14312479 Msa0719270:CDS
GCTGGTGGTGCTGTTGCTGC+AGG 0.363219 5_1:+14312766 Msa0719270:CDS
CATCGAGTTCGTGTATCATA+TGG 0.363899 5_1:-14312036 None:intergenic
GCCATTCAGAGCACATCAAC+AGG 0.364880 5_1:+14312523 Msa0719270:CDS
AGTGGTTTAATTTGGCTTGT+TGG 0.375868 5_1:+14312103 Msa0719270:CDS
AGCTGCATTGGCGACTGTGC+TGG 0.377357 5_1:-14311858 None:intergenic
CAGTTGGGCCAGGACGGATT+AGG 0.378121 5_1:+14312671 Msa0719270:CDS
TCAGGGTTTGGATTCTATTA+CGG 0.378827 5_1:+14312460 Msa0719270:CDS
TCAACGGTTACCTCTTTCAT+TGG 0.381125 5_1:-14308596 None:intergenic
GAGCGATATTATGAGTCTTT+GGG 0.383579 5_1:+14312066 Msa0719270:CDS
ACATCAATTGCTTGGGCTAC+AGG 0.393116 5_1:+14311665 Msa0719270:CDS
TTGTTGGACAGCTTTGCATT+AGG 0.398635 5_1:+14312296 Msa0719270:CDS
GAGCTGCAGGTTTGTGTGTC+GGG 0.405501 5_1:+14312635 Msa0719270:CDS
AACGAGTGGGAAAAGGAAAT+AGG 0.408665 5_1:-14312347 None:intergenic
AGAGCTAGAGAAGCTTATAA+TGG 0.410545 5_1:+14308761 Msa0719270:CDS
CGGACACAGTCACTGGAAAT+GGG 0.411485 5_1:+14312480 Msa0719270:CDS
TCACTTCATGCTACTGCTGC+TGG 0.412960 5_1:+14311977 Msa0719270:CDS
AGGACAGTGGTAAGAGAAGA+AGG 0.414441 5_1:-14308515 None:intergenic
CTTTCTCTATATGGTATGCT+TGG 0.415039 5_1:+14312608 Msa0719270:CDS
GGGTTCACAGTTGGTTCAGT+TGG 0.419215 5_1:+14312655 Msa0719270:CDS
CTCATCACAGTTGCAGCAAC+AGG 0.423526 5_1:+14311752 Msa0719270:CDS
CAACGGTTACCTCTTTCATT+GGG 0.429318 5_1:-14308595 None:intergenic
CTTGAGAGTTGTTCCGGTGA+AGG 0.430405 5_1:-14311912 None:intergenic
ACAGCTCTGTTGTGTAAGTC+AGG 0.431402 5_1:-14308728 None:intergenic
CTACTGTTTCACTTCAAGAA+TGG 0.440649 5_1:+14308921 Msa0719270:CDS
TGGAATGGACATCAATTGCT+TGG 0.448789 5_1:+14311657 Msa0719270:CDS
CTCATGATCCGCGCCTTCAC+CGG 0.455419 5_1:+14311899 Msa0719270:CDS
GGTGTTAGATTGTGCTCCAT+CGG 0.459276 5_1:+14312573 Msa0719270:CDS
CGGTGAAGATGCAGATCGTT+GGG 0.462336 5_1:+14312416 Msa0719270:CDS
GGTTCACAGTTGGTTCAGTT+GGG 0.464283 5_1:+14312656 Msa0719270:CDS
GTGTTAGATTGTGCTCCATC+GGG 0.470775 5_1:+14312574 Msa0719270:CDS
TTTCTTCATCCCAATGAAAG+AGG 0.476943 5_1:+14308586 Msa0719270:exon
AAGGAAAGGAAGCCAAGAAT+TGG 0.479551 5_1:-14311704 None:intergenic
TATAATGGTTATGAAGAAGT+TGG 0.482116 5_1:+14308776 Msa0719270:CDS
TGGCACTCACTGCTCTCAAA+AGG 0.482913 5_1:+14308958 Msa0719270:CDS
GGAATGGACATCAATTGCTT+GGG 0.484450 5_1:+14311658 Msa0719270:CDS
AAAACTAATGAATGGATTGA+GGG 0.487114 5_1:+14312899 Msa0719270:three_prime_UTR
ATCTTAACCACGCGCAGTAA+AGG 0.487567 5_1:-14312388 None:intergenic
ATAATGAGAGGAAAGACAAC+AGG 0.494062 5_1:-14308878 None:intergenic
TCTATTACGGACACAGTCAC+TGG 0.495368 5_1:+14312473 Msa0719270:CDS
GCCAAGAATTGGTGCAGCTA+TGG 0.496623 5_1:-14311693 None:intergenic
GCTATGATGCCAGCGATGTA+GGG 0.504428 5_1:-14311833 None:intergenic
ACAATGAAACGAGTGGGAAA+AGG 0.511644 5_1:-14312354 None:intergenic
TGCTATGATGCCAGCGATGT+AGG 0.512118 5_1:-14311834 None:intergenic
TGAATGGATTGAGGGATGAA+TGG 0.513135 5_1:+14312907 Msa0719270:three_prime_UTR
ACAGTTGGTTCAGTTGGGCC+AGG 0.514316 5_1:+14312661 Msa0719270:CDS
GACACCACCTTCAGCTTCAA+CGG 0.516913 5_1:-14308612 None:intergenic
AGTAGCATGAAGTGAGAGGC+GGG 0.517268 5_1:-14311969 None:intergenic
CCCTGTTGATGTGCTCTGAA+TGG 0.519342 5_1:-14312524 None:intergenic
ATGCTGCGTGTGAGCTGCAT+TGG 0.519683 5_1:-14311870 None:intergenic
TGTGCTCCATCGGGAAAAGA+AGG 0.520552 5_1:+14312583 Msa0719270:CDS
GAGGAAAGAAAATAAAAGAG+AGG 0.520821 5_1:-14308493 None:intergenic
TAGTGTAGTGAGAGTGAGTA+GGG 0.523593 5_1:-14308415 None:intergenic
ATCTTCATTCCCTACATCGC+TGG 0.524652 5_1:+14311824 Msa0719270:CDS
TCACTGGAAATGGGGACACT+TGG 0.526145 5_1:+14312489 Msa0719270:CDS
GGACGGATTAGGACTTCGTT+CGG 0.527260 5_1:+14312682 Msa0719270:CDS
TTGTGTGTCGGGTTCACAGT+TGG 0.527867 5_1:+14312646 Msa0719270:CDS
GTAGTGAGAGTGAGTAGGGT+GGG 0.528498 5_1:-14308411 None:intergenic
CTGGTGGTGCTGTTGCTGCA+GGG 0.528747 5_1:+14312767 Msa0719270:CDS
AGAGCTGCAGGTTTGTGTGT+CGG 0.529302 5_1:+14312634 Msa0719270:CDS
CACGGTCATGGTCATGGTCA+AGG 0.531366 5_1:+14308653 Msa0719270:CDS
GAAGCTGAAGGTGGTGTCCT+TGG 0.531829 5_1:+14308617 Msa0719270:CDS
TCGGTGAAGATGCAGATCGT+TGG 0.534098 5_1:+14312415 Msa0719270:CDS
AAATATCCTCATGCTATTGG+AGG 0.534903 5_1:+14312208 Msa0719270:CDS
TGCCGTCGAGGTGGAAGGAA+AGG 0.538718 5_1:-14311718 None:intergenic
AGGAAAGAAAATAAAAGAGA+GGG 0.539601 5_1:-14308492 None:intergenic
GAAGGTGGTGTCCTTGGCCA+TGG 0.540959 5_1:+14308623 Msa0719270:CDS
GCTGGATTCTTCAAAGTCAC+AGG 0.541392 5_1:+14311800 Msa0719270:CDS
CGTGTCCATGTCCATGGCCA+AGG 0.543635 5_1:-14308634 None:intergenic
CGGTGAAGGCGCGGATCATG+AGG 0.544790 5_1:-14311898 None:intergenic
CGATAATGAGAGAAGCTCTC+CGG 0.546258 5_1:+14312801 Msa0719270:CDS
TTCCTTTCCTTCCACCTCGA+CGG 0.548596 5_1:+14311716 Msa0719270:CDS
TGCAGGTATAACAAACTCAC+TGG 0.550122 5_1:+14311605 Msa0719270:intron
AACGAAGTCCTAATCCGTCC+TGG 0.555456 5_1:-14312679 None:intergenic
CCTTGCATCATTCACAACAA+TGG 0.558736 5_1:+14312246 Msa0719270:CDS
TTTGGAAACATCAGTGATGC+TGG 0.565468 5_1:+14312748 Msa0719270:CDS
GGTGTCCTTGGCCATGGACA+TGG 0.565826 5_1:+14308629 Msa0719270:CDS
TGTAGTGAGAGTGAGTAGGG+TGG 0.566435 5_1:-14308412 None:intergenic
GTGACTTTGAAGAATCCAGC+CGG 0.572168 5_1:-14311797 None:intergenic
GAATGGAACAAAACTCATCC+TGG 0.572504 5_1:+14308938 Msa0719270:CDS
GCAGCTTCAGAAGTTGCTAA+AGG 0.575778 5_1:+14308683 Msa0719270:CDS
AGCATGAGGATATTTGAAGA+TGG 0.576279 5_1:-14312200 None:intergenic
GCATAAAGAAAATGTGTTGG+TGG 0.577106 5_1:+14313209 Msa0719270:three_prime_UTR
GCTACAACCTTTACTGCGCG+TGG 0.579631 5_1:+14312381 Msa0719270:CDS
GAAATTGCCGTCGAGGTGGA+AGG 0.582982 5_1:-14311723 None:intergenic
TATGCTTGGATGAGAGCTGC+AGG 0.590623 5_1:+14312622 Msa0719270:CDS
CTAGTGTAGTGAGAGTGAGT+AGG 0.590844 5_1:-14308416 None:intergenic
TTGGTTCAGTTGGGCCAGGA+CGG 0.593555 5_1:+14312665 Msa0719270:CDS
CAGCAGTAGCATGAAGTGAG+AGG 0.596792 5_1:-14311973 None:intergenic
CATGGACACGGTCATGGTCA+TGG 0.596886 5_1:+14308647 Msa0719270:CDS
GCAGCTCACACGCAGCATCT+CGG 0.598823 5_1:+14311875 Msa0719270:CDS
GAGGTAACCGTTGAAGCTGA+AGG 0.598999 5_1:+14308605 Msa0719270:CDS
CTTGGCCATGGACATGGACA+CGG 0.602060 5_1:+14308635 Msa0719270:CDS
ACAGTTGCAGCAACAGGTGT+AGG 0.603510 5_1:+14311758 Msa0719270:CDS
CATGACCGTGTCCATGTCCA+TGG 0.605139 5_1:-14308640 None:intergenic
GAGTAATGGTGAGAGGACAG+TGG 0.613645 5_1:-14308528 None:intergenic
TGACTTTGAAGAATCCAGCC+GGG 0.614345 5_1:-14311796 None:intergenic
CAGTAGCATGAAGTGAGAGG+CGG 0.616592 5_1:-14311970 None:intergenic
CATTCTTGAAGTGAAACAGT+AGG 0.619087 5_1:-14308920 None:intergenic
TAGTGAGAGTGAGTAGGGTG+GGG 0.619947 5_1:-14308410 None:intergenic
TGAAGCTGACTGATAATGAG+AGG 0.621573 5_1:-14308890 None:intergenic
TATGCATAAAGAAAATGTGT+TGG 0.624754 5_1:+14313206 Msa0719270:three_prime_UTR
CATGGACATGGACACGGTCA+TGG 0.624917 5_1:+14308641 Msa0719270:CDS
GAGTTGTTCCGGTGAAGGCG+CGG 0.634731 5_1:-14311907 None:intergenic
CAGAACAAAAGCAAATGCAA+TGG 0.636950 5_1:-14312319 None:intergenic
CGAAAATGAGATCGAATCAG+TGG 0.639897 5_1:-14312158 None:intergenic
TCAGAATGAGTAATGGTGAG+AGG 0.646029 5_1:-14308535 None:intergenic
GCAGTGACAATGAAACGAGT+GGG 0.647158 5_1:-14312360 None:intergenic
GAGGGATGAATGGTGGTGCA+TGG 0.650033 5_1:+14312917 Msa0719270:three_prime_UTR
GAATCTAAACCAGAAACCAC+CGG 0.650603 5_1:-14312820 None:intergenic
TTGGGAAATTGCCGTCGAGG+TGG 0.658482 5_1:-14311727 None:intergenic
GGACACAGTCACTGGAAATG+GGG 0.658492 5_1:+14312481 Msa0719270:CDS
ACAGTGGTAAGAGAAGAAGG+AGG 0.659884 5_1:-14308512 None:intergenic
TAATGAGAGAAGCTCTCCGG+TGG 0.661539 5_1:+14312804 Msa0719270:CDS
AGCAGTGACAATGAAACGAG+TGG 0.669827 5_1:-14312361 None:intergenic
TCTTGAAGTGAAACAGTAGG+TGG 0.671080 5_1:-14308917 None:intergenic
CCATTCAGAGCACATCAACA+GGG 0.673190 5_1:+14312524 Msa0719270:CDS
ATGGATTGAGGGATGAATGG+TGG 0.673864 5_1:+14312910 Msa0719270:three_prime_UTR
GCAAGACCTCCAATAGCATG+AGG 0.680349 5_1:-14312214 None:intergenic
CCATTGTTGTGAATGATGCA+AGG 0.682905 5_1:-14312246 None:intergenic
GTAACCGTTGAAGCTGAAGG+TGG 0.694916 5_1:+14308608 Msa0719270:CDS
GCGCGTGGTTAAGATGAACT+CGG 0.697491 5_1:+14312396 Msa0719270:CDS
GGTCATGGTCATGGTCAAGG+TGG 0.721186 5_1:+14308656 Msa0719270:CDS
GGAAACATCAGTGATGCTGG+TGG 0.756197 5_1:+14312751 Msa0719270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTAAAATAATAATTTTTA+TGG - chr5_1:14309513-14309532 None:intergenic 0.0%
!!! AAATTATTATTTTAATAAAA+TGG + chr5_1:14309516-14309535 Msa0719270:intron 0.0%
!! AATATAAAAAACATAACTTA+GGG - chr5_1:14309011-14309030 None:intergenic 10.0%
!! AAATATAAAAAACATAACTT+AGG - chr5_1:14309012-14309031 None:intergenic 10.0%
!!! TTTAATAAAAGTATCTATTA+AGG + chr5_1:14309257-14309276 Msa0719270:intron 10.0%
!! ATTAAATAAATAATATTGGT+GGG - chr5_1:14309460-14309479 None:intergenic 10.0%
!! TATTAAATAAATAATATTGG+TGG - chr5_1:14309461-14309480 None:intergenic 10.0%
!! GTCTATTAAATAAATAATAT+TGG - chr5_1:14309464-14309483 None:intergenic 10.0%
!! AAAGGAAAAAAAAAAATTAA+GGG - chr5_1:14309597-14309616 None:intergenic 10.0%
!! AAAAGGAAAAAAAAAAATTA+AGG - chr5_1:14309598-14309617 None:intergenic 10.0%
!! AAAATTAATTATGTAAAAAG+TGG + chr5_1:14310823-14310842 Msa0719270:intron 10.0%
!!! ATTTTTGTTGTATATATCAA+TGG - chr5_1:14309922-14309941 None:intergenic 15.0%
!! CAAAATTCTGAATATTTATA+AGG - chr5_1:14310136-14310155 None:intergenic 15.0%
!!! TGTTGATTCAAAATTTTATA+AGG - chr5_1:14310196-14310215 None:intergenic 15.0%
!!! AAAGTGTGATTTTATTTTAT+AGG + chr5_1:14310324-14310343 Msa0719270:intron 15.0%
!!! AAGTGTGATTTTATTTTATA+GGG + chr5_1:14310325-14310344 Msa0719270:intron 15.0%
!! TGAGGATAATATTAATATTA+GGG - chr5_1:14310399-14310418 None:intergenic 15.0%
!! TTGAGGATAATATTAATATT+AGG - chr5_1:14310400-14310419 None:intergenic 15.0%
!! AATATTAATATTATCCTCAA+CGG + chr5_1:14310400-14310419 Msa0719270:intron 15.0%
!! TGTAATTAAATATTTACACT+AGG + chr5_1:14310498-14310517 Msa0719270:intron 15.0%
!!! TATGTAAATATTTTTACACT+AGG + chr5_1:14310795-14310814 Msa0719270:intron 15.0%
!! TGCTATGTAAAAAAAAAAAA+AGG + chr5_1:14310866-14310885 Msa0719270:intron 15.0%
!! GCTATGTAAAAAAAAAAAAA+GGG + chr5_1:14310867-14310886 Msa0719270:intron 15.0%
!!! GTAAATTTGAAATTAATTGT+CGG + chr5_1:14310914-14310933 Msa0719270:intron 15.0%
!!! TTTTTAAACAATTATTGTCT+AGG + chr5_1:14311026-14311045 Msa0719270:intron 15.0%
!!! TTTTAAACAATTATTGTCTA+GGG + chr5_1:14311027-14311046 Msa0719270:intron 15.0%
!! TCAAGTACAATAATATAAAA+TGG + chr5_1:14311067-14311086 Msa0719270:intron 15.0%
!! AAATCAAATAAAAATTCCAA+AGG - chr5_1:14311111-14311130 None:intergenic 15.0%
!!! TTTCTTTTTAATTTAAGTTG+AGG + chr5_1:14313099-14313118 Msa0719270:three_prime_UTR 15.0%
!! AGAAAATAAGAAAGAAAAAG+GGG - chr5_1:14308565-14308584 None:intergenic 20.0%
!! GAGAAAATAAGAAAGAAAAA+GGG - chr5_1:14308566-14308585 None:intergenic 20.0%
!! AGAGAAAATAAGAAAGAAAA+AGG - chr5_1:14308567-14308586 None:intergenic 20.0%
!!! TTTTAATAATAGTACCTAGT+AGG + chr5_1:14309386-14309405 Msa0719270:intron 20.0%
!!! TCAATTAGATATTTTGTTAG+AGG - chr5_1:14309435-14309454 None:intergenic 20.0%
!!! TTTTTTTCCTTTTTTCACAA+TGG + chr5_1:14309605-14309624 Msa0719270:intron 20.0%
!!! ACAAAAATGACCTTATTTTA+TGG - chr5_1:14309715-14309734 None:intergenic 20.0%
!!! AAGTGTGATTTTATTTTGTA+GGG - chr5_1:14310167-14310186 None:intergenic 20.0%
!!! AAAGTGTGATTTTATTTTGT+AGG - chr5_1:14310168-14310187 None:intergenic 20.0%
!!! GTTGATGGAAAAATTTTATA+GGG - chr5_1:14310227-14310246 None:intergenic 20.0%
!!! TGTTGATGGAAAAATTTTAT+AGG - chr5_1:14310228-14310247 None:intergenic 20.0%
!!! AAAATTTCCATCAACATTTT+TGG + chr5_1:14310264-14310283 Msa0719270:intron 20.0%
!! ACAAAACTGTGAATATTTAT+AGG + chr5_1:14310355-14310374 Msa0719270:intron 20.0%
!! CAAAACTGTGAATATTTATA+GGG + chr5_1:14310356-14310375 Msa0719270:intron 20.0%
!! ATATTTATTGGAGATCTTTA+AGG - chr5_1:14310736-14310755 None:intergenic 20.0%
!! AATATTTACGTAAATTGCTT+TGG + chr5_1:14311354-14311373 Msa0719270:intron 20.0%
!! ATATTTACGTAAATTGCTTT+GGG + chr5_1:14311355-14311374 Msa0719270:intron 20.0%
!! AACTATTAAACGATATGAAA+CGG + chr5_1:14311378-14311397 Msa0719270:intron 20.0%
!! TCATGACAAAATATAAATGT+AGG - chr5_1:14311418-14311437 None:intergenic 20.0%
!! AAGAAGAAAAAACTAATGAA+TGG + chr5_1:14312891-14312910 Msa0719270:three_prime_UTR 20.0%
!!! TTGTATGATTGATTTTAGTT+AGG + chr5_1:14313020-14313039 Msa0719270:three_prime_UTR 20.0%
!!! TTTAATTTAAGTTGAGGATT+TGG + chr5_1:14313105-14313124 Msa0719270:three_prime_UTR 20.0%
! TGTTTAGGAAAAACAACAAA+AGG - chr5_1:14308453-14308472 None:intergenic 25.0%
! AGGAAAGAAAATAAAAGAGA+GGG - chr5_1:14308495-14308514 None:intergenic 25.0%
! AAAATAAGAAAGAAAAAGGG+GGG - chr5_1:14308563-14308582 None:intergenic 25.0%
! GAAAATAAGAAAGAAAAAGG+GGG - chr5_1:14308564-14308583 None:intergenic 25.0%
! TATAATGGTTATGAAGAAGT+TGG + chr5_1:14308776-14308795 Msa0719270:CDS 25.0%
! ACAATGATAGTTTCCTAAAA+AGG + chr5_1:14309189-14309208 Msa0719270:intron 25.0%
! TCTTATTAGTGTATTGTCAT+TGG - chr5_1:14309294-14309313 None:intergenic 25.0%
!!! ATTTTAATAAAATGGTGACG+TGG + chr5_1:14309524-14309543 Msa0719270:intron 25.0%
! ATTAAGACCTCATTCTTAAA+TGG - chr5_1:14309552-14309571 None:intergenic 25.0%
!! AGTCTTGAACATTTAAGATT+TGG - chr5_1:14309647-14309666 None:intergenic 25.0%
!! TATAGTTTGCAATCATGAAA+AGG + chr5_1:14309767-14309786 Msa0719270:intron 25.0%
!!! TGAAAGTGGTTTTTGAAAAA+AGG - chr5_1:14309850-14309869 None:intergenic 25.0%
!!! TAATAAATAGGGTTGATGTT+CGG - chr5_1:14309881-14309900 None:intergenic 25.0%
!! GTATATATCAATGGTTGATA+TGG - chr5_1:14309913-14309932 None:intergenic 25.0%
!!! CTCTCTCTTGTTTTATATTT+TGG - chr5_1:14309960-14309979 None:intergenic 25.0%
!! AAATTTTCAAAAGATGACAC+AGG - chr5_1:14310070-14310089 None:intergenic 25.0%
! AGACACTAGTATTAATATCA+AGG + chr5_1:14310092-14310111 Msa0719270:intron 25.0%
! GACACTAGTATTAATATCAA+GGG + chr5_1:14310093-14310112 Msa0719270:intron 25.0%
! TCAAGGGTTAATTAAGTAAA+TGG + chr5_1:14310109-14310128 Msa0719270:intron 25.0%
!!! GTTGATGGAAATTTTTTACA+GGG - chr5_1:14310259-14310278 None:intergenic 25.0%
!!! TGTTGATGGAAATTTTTTAC+AGG - chr5_1:14310260-14310279 None:intergenic 25.0%
!! CATTTTCCTTAACCATTTTA+GGG - chr5_1:14310291-14310310 None:intergenic 25.0%
!! ACATTTTCCTTAACCATTTT+AGG - chr5_1:14310292-14310311 None:intergenic 25.0%
! TAAAATACTATAGTCTCAAG+TGG - chr5_1:14310453-14310472 None:intergenic 25.0%
! ACATGCATTTAATCAAATCA+TGG + chr5_1:14310679-14310698 Msa0719270:intron 25.0%
! CATGCATTTAATCAAATCAT+GGG + chr5_1:14310680-14310699 Msa0719270:intron 25.0%
! AGATCTCCAATAAATATGAT+TGG + chr5_1:14310739-14310758 Msa0719270:intron 25.0%
! ATAGGTCCAATCATATTTAT+TGG - chr5_1:14310748-14310767 None:intergenic 25.0%
! CATAAAAGTTTCTTACACAT+AGG - chr5_1:14310766-14310785 None:intergenic 25.0%
!! CTATGTGTAAGAAACTTTTA+TGG + chr5_1:14310764-14310783 Msa0719270:intron 25.0%
!!! GTAAATATTTTTACACTAGG+TGG + chr5_1:14310798-14310817 Msa0719270:intron 25.0%
!!! AGTGGTGTATACTTTTTTTA+AGG + chr5_1:14310841-14310860 Msa0719270:intron 25.0%
! ATATTTCCAAAAGAAACCTT+TGG + chr5_1:14311092-14311111 Msa0719270:intron 25.0%
!! AAAATTCCAAAGGTTTCTTT+TGG - chr5_1:14311101-14311120 None:intergenic 25.0%
! GATCAAATCATAATTCTTCT+TGG - chr5_1:14311137-14311156 None:intergenic 25.0%
!!! TTGATCAATCAATGTTTTGA+AGG + chr5_1:14311151-14311170 Msa0719270:intron 25.0%
!!! TGATCAATCAATGTTTTGAA+GGG + chr5_1:14311152-14311171 Msa0719270:intron 25.0%
!! ATTTTGTCATGATGTAACAT+TGG + chr5_1:14311426-14311445 Msa0719270:intron 25.0%
! ATTAGCACATATGTAAACTT+TGG - chr5_1:14311571-14311590 None:intergenic 25.0%
!!! TGCTGAAAACTTTGAAATTA+TGG - chr5_1:14311636-14311655 None:intergenic 25.0%
!! AATTTCAAAGTTTTCAGCAT+TGG + chr5_1:14311637-14311656 Msa0719270:CDS 25.0%
! GATATTTGAAGATGGAAAAA+GGG - chr5_1:14312195-14312214 None:intergenic 25.0%
!!! AAAAACTAATGAATGGATTG+AGG + chr5_1:14312898-14312917 Msa0719270:three_prime_UTR 25.0%
!!! AAAACTAATGAATGGATTGA+GGG + chr5_1:14312899-14312918 Msa0719270:three_prime_UTR 25.0%
! TATGCATAAAGAAAATGTGT+TGG + chr5_1:14313206-14313225 Msa0719270:three_prime_UTR 25.0%
!!! GTTGTGTTTGTGTTTTGTTT+AGG - chr5_1:14308468-14308487 None:intergenic 30.0%
GAGGAAAGAAAATAAAAGAG+AGG - chr5_1:14308496-14308515 None:intergenic 30.0%
CCAAAAGTTTCAAATCTAGA+AGG - chr5_1:14308809-14308828 None:intergenic 30.0%
!! CCTTCTAGATTTGAAACTTT+TGG + chr5_1:14308806-14308825 Msa0719270:CDS 30.0%
!! CTAGATTTGAAACTTTTGGT+TGG + chr5_1:14308810-14308829 Msa0719270:CDS 30.0%
CATAACTTAGGGAAAAAATG+TGG - chr5_1:14309000-14309019 None:intergenic 30.0%
! CCATTTAAAGAGTCCTTTTT+AGG - chr5_1:14309205-14309224 None:intergenic 30.0%
CCTAAAAAGGACTCTTTAAA+TGG + chr5_1:14309202-14309221 Msa0719270:intron 30.0%
TAAAAGTGATGTGTCAATGT+GGG - chr5_1:14309360-14309379 None:intergenic 30.0%
TTAAAAGTGATGTGTCAATG+TGG - chr5_1:14309361-14309380 None:intergenic 30.0%
TAAGGGTCTTAAAAGATGTA+AGG - chr5_1:14309580-14309599 None:intergenic 30.0%
GTTACTTCCATTGTGAAAAA+AGG - chr5_1:14309615-14309634 None:intergenic 30.0%
! TATTTTATGGAACCCTATGT+TGG - chr5_1:14309702-14309721 None:intergenic 30.0%
ACATAGGGTTCCATAAAATA+AGG + chr5_1:14309702-14309721 Msa0719270:intron 30.0%
TTCATGATTGCAAACTATAG+TGG - chr5_1:14309766-14309785 None:intergenic 30.0%
TCAACCCTATTTATTAACCT+TGG + chr5_1:14309885-14309904 Msa0719270:intron 30.0%
GGTACCAAGGTTAATAAATA+GGG - chr5_1:14309892-14309911 None:intergenic 30.0%
TGGTACCAAGGTTAATAAAT+AGG - chr5_1:14309893-14309912 None:intergenic 30.0%
!!! AACATTTTTGGTCCCTAAAA+TGG + chr5_1:14310276-14310295 Msa0719270:intron 30.0%
AATTAAAGACTTAACCGTTG+AGG - chr5_1:14310417-14310436 None:intergenic 30.0%
TAAAAACAGCTTCATCTTGT+CGG - chr5_1:14310990-14311009 None:intergenic 30.0%
GCATATTAACGACCTTTAAA+TGG - chr5_1:14311272-14311291 None:intergenic 30.0%
! ATTTTGTGCTGTGAAAAACA+CGG + chr5_1:14311297-14311316 Msa0719270:intron 30.0%
ATTAAACGATATGAAACGGA+TGG + chr5_1:14311382-14311401 Msa0719270:intron 30.0%
AAAAGTAGATCTTACTGTGT+TGG + chr5_1:14311493-14311512 Msa0719270:intron 30.0%
TTACATATGTGCTAATGTAC+TGG + chr5_1:14311575-14311594 Msa0719270:intron 30.0%
! CGATTTTCAGTGGTTTAATT+TGG + chr5_1:14312095-14312114 Msa0719270:CDS 30.0%
GGATATTTGAAGATGGAAAA+AGG - chr5_1:14312196-14312215 None:intergenic 30.0%
TTCAAATATCCTCATGCTAT+TGG + chr5_1:14312205-14312224 Msa0719270:CDS 30.0%
CATGCAACAGTAGAAAAAAA+GGG + chr5_1:14312987-14313006 Msa0719270:three_prime_UTR 30.0%
ATGCAACAGTAGAAAAAAAG+GGG + chr5_1:14312988-14313007 Msa0719270:three_prime_UTR 30.0%
TTTCTTCATCCCAATGAAAG+AGG + chr5_1:14308586-14308605 Msa0719270:exon 35.0%
AGAGCTAGAGAAGCTTATAA+TGG + chr5_1:14308761-14308780 Msa0719270:CDS 35.0%
ATAATGAGAGGAAAGACAAC+AGG - chr5_1:14308881-14308900 None:intergenic 35.0%
CATTCTTGAAGTGAAACAGT+AGG - chr5_1:14308923-14308942 None:intergenic 35.0%
CTACTGTTTCACTTCAAGAA+TGG + chr5_1:14308921-14308940 Msa0719270:CDS 35.0%
TGTGCTAGTGAATTTAGTCA+TGG - chr5_1:14309049-14309068 None:intergenic 35.0%
!!! GGTTTTTTTGCTAGAGAACT+TGG - chr5_1:14309155-14309174 None:intergenic 35.0%
! TCATTGTGAATGCTCTAAGT+GGG - chr5_1:14309176-14309195 None:intergenic 35.0%
! ATCATTGTGAATGCTCTAAG+TGG - chr5_1:14309177-14309196 None:intergenic 35.0%
AAATAAGTGATGTGTCACGT+GGG - chr5_1:14309230-14309249 None:intergenic 35.0%
TAAATAAGTGATGTGTCACG+TGG - chr5_1:14309231-14309250 None:intergenic 35.0%
!! ACTAATAAGAGCATCCACAA+TGG + chr5_1:14309304-14309323 Msa0719270:intron 35.0%
! TTTTGTTAGAGGATCTCCAT+TGG - chr5_1:14309424-14309443 None:intergenic 35.0%
! GCAAACTATAGTGGAACAAA+CGG - chr5_1:14309757-14309776 None:intergenic 35.0%
GGTTTGTAACAAAGCCATAA+AGG - chr5_1:14309798-14309817 None:intergenic 35.0%
ACCAACTTTACTCTTACTCA+AGG + chr5_1:14309815-14309834 Msa0719270:intron 35.0%
CCAACTTTACTCTTACTCAA+GGG + chr5_1:14309816-14309835 Msa0719270:intron 35.0%
CAAACATTTGTATACTCCCT+AGG - chr5_1:14310029-14310048 None:intergenic 35.0%
! GGGAGTATACAAATGTTTGT+CGG + chr5_1:14310030-14310049 Msa0719270:intron 35.0%
ACAGGGACTAAAAATGTTGA+TGG - chr5_1:14310242-14310261 None:intergenic 35.0%
TTAGGGACCAAAAATGTTGA+TGG - chr5_1:14310274-14310293 None:intergenic 35.0%
TTTGGTCCCTAAAATGGTTA+AGG + chr5_1:14310282-14310301 Msa0719270:intron 35.0%
ATGGTTAAGGAAAATGTCAC+AGG + chr5_1:14310295-14310314 Msa0719270:intron 35.0%
TGGTTAAGGAAAATGTCACA+GGG + chr5_1:14310296-14310315 Msa0719270:intron 35.0%
GAAAACAAGCATATTGCACA+TGG - chr5_1:14311220-14311239 None:intergenic 35.0%
CACCTCAGATATCCATTTAA+AGG + chr5_1:14311257-14311276 Msa0719270:intron 35.0%
GACCTTTAAATGGATATCTG+AGG - chr5_1:14311262-14311281 None:intergenic 35.0%
! TTTTGTGCTGTGAAAAACAC+GGG + chr5_1:14311298-14311317 Msa0719270:intron 35.0%
!! CAAAGTTTTCAGCATTGGAA+TGG + chr5_1:14311642-14311661 Msa0719270:CDS 35.0%
! GCACAGTTTTTCATTAGACA+AGG + chr5_1:14311938-14311957 Msa0719270:CDS 35.0%
AGAGCGATATTATGAGTCTT+TGG + chr5_1:14312065-14312084 Msa0719270:CDS 35.0%
GAGCGATATTATGAGTCTTT+GGG + chr5_1:14312066-14312085 Msa0719270:CDS 35.0%
!! AGTGGTTTAATTTGGCTTGT+TGG + chr5_1:14312103-14312122 Msa0719270:CDS 35.0%
!! GTGGTTTAATTTGGCTTGTT+GGG + chr5_1:14312104-14312123 Msa0719270:CDS 35.0%
AGCATGAGGATATTTGAAGA+TGG - chr5_1:14312203-14312222 None:intergenic 35.0%
AAATATCCTCATGCTATTGG+AGG + chr5_1:14312208-14312227 Msa0719270:CDS 35.0%
!! CACAACAATGGCTATTTTCA+CGG + chr5_1:14312258-14312277 Msa0719270:CDS 35.0%
!! ACAACAATGGCTATTTTCAC+GGG + chr5_1:14312259-14312278 Msa0719270:CDS 35.0%
CAGAACAAAAGCAAATGCAA+TGG - chr5_1:14312322-14312341 None:intergenic 35.0%
!! CATTGCATTTGCTTTTGTTC+TGG + chr5_1:14312320-14312339 Msa0719270:CDS 35.0%
TCAGGGTTTGGATTCTATTA+CGG + chr5_1:14312460-14312479 Msa0719270:CDS 35.0%
!! AAGAAGGTGCTTTCTCTATA+TGG + chr5_1:14312599-14312618 Msa0719270:CDS 35.0%
CTTTCTCTATATGGTATGCT+TGG + chr5_1:14312608-14312627 Msa0719270:CDS 35.0%
! GGAATTGTTGTGTTGCTATT+TGG + chr5_1:14312730-14312749 Msa0719270:CDS 35.0%
GCATGCAACAGTAGAAAAAA+AGG + chr5_1:14312986-14313005 Msa0719270:three_prime_UTR 35.0%
TGCAACAGTAGAAAAAAAGG+GGG + chr5_1:14312989-14313008 Msa0719270:three_prime_UTR 35.0%
GCATAAAGAAAATGTGTTGG+TGG + chr5_1:14313209-14313228 Msa0719270:three_prime_UTR 35.0%
TAGTGTAGTGAGAGTGAGTA+GGG - chr5_1:14308418-14308437 None:intergenic 40.0%
TCAGAATGAGTAATGGTGAG+AGG - chr5_1:14308538-14308557 None:intergenic 40.0%
CAACGGTTACCTCTTTCATT+GGG - chr5_1:14308598-14308617 None:intergenic 40.0%
TCAACGGTTACCTCTTTCAT+TGG - chr5_1:14308599-14308618 None:intergenic 40.0%
! TGAAGCTGACTGATAATGAG+AGG - chr5_1:14308893-14308912 None:intergenic 40.0%
TCTTGAAGTGAAACAGTAGG+TGG - chr5_1:14308920-14308939 None:intergenic 40.0%
GAATGGAACAAAACTCATCC+TGG + chr5_1:14308938-14308957 Msa0719270:CDS 40.0%
AATAAGTGATGTGTCACGTG+GGG - chr5_1:14309229-14309248 None:intergenic 40.0%
AAAGATGAGAGTCTCCATTG+TGG - chr5_1:14309321-14309340 None:intergenic 40.0%
CGTGGATCCATTTAAGAATG+AGG + chr5_1:14309542-14309561 Msa0719270:intron 40.0%
TTCAAGACTCTCCGAAGATA+AGG + chr5_1:14309658-14309677 Msa0719270:intron 40.0%
ACACCATACCTCCTTATCTT+CGG - chr5_1:14309672-14309691 None:intergenic 40.0%
TGGTGTGACAAATCCAACAT+AGG + chr5_1:14309686-14309705 Msa0719270:intron 40.0%
GGTGTGACAAATCCAACATA+GGG + chr5_1:14309687-14309706 Msa0719270:intron 40.0%
! ATGAAAAGGCGTGTCCTTTA+TGG + chr5_1:14309781-14309800 Msa0719270:intron 40.0%
CCCTTGAGTAAGAGTAAAGT+TGG - chr5_1:14309819-14309838 None:intergenic 40.0%
!! AAATAGGGTTGATGTTCGGT+GGG - chr5_1:14309877-14309896 None:intergenic 40.0%
!! TAAATAGGGTTGATGTTCGG+TGG - chr5_1:14309878-14309897 None:intergenic 40.0%
! CAATGGTTGATATGGTACCA+AGG - chr5_1:14309905-14309924 None:intergenic 40.0%
ACATTTGTATACTCCCTAGG+AGG - chr5_1:14310026-14310045 None:intergenic 40.0%
AAAGATGACACAGGAGTTTC+AGG - chr5_1:14310061-14310080 None:intergenic 40.0%
CAAGCATATTGCACATGGAA+AGG - chr5_1:14311215-14311234 None:intergenic 40.0%
! AATGTACTGGTGAATTGTGC+AGG + chr5_1:14311588-14311607 Msa0719270:intron 40.0%
TGCAGGTATAACAAACTCAC+TGG + chr5_1:14311605-14311624 Msa0719270:intron 40.0%
TGGAATGGACATCAATTGCT+TGG + chr5_1:14311657-14311676 Msa0719270:CDS 40.0%
GGAATGGACATCAATTGCTT+GGG + chr5_1:14311658-14311677 Msa0719270:CDS 40.0%
AAGGAAAGGAAGCCAAGAAT+TGG - chr5_1:14311707-14311726 None:intergenic 40.0%
! CTGCAACTGTGATGAGTTTT+GGG - chr5_1:14311748-14311767 None:intergenic 40.0%
TGCTTTCTTGAGAGTTGTTC+CGG - chr5_1:14311921-14311940 None:intergenic 40.0%
CATCGAGTTCGTGTATCATA+TGG - chr5_1:14312039-14312058 None:intergenic 40.0%
!! TGGGTTGTTTCGATTTTCAG+TGG + chr5_1:14312085-14312104 Msa0719270:CDS 40.0%
CGAAAATGAGATCGAATCAG+TGG - chr5_1:14312161-14312180 None:intergenic 40.0%
! ATTCGATCTCATTTTCGTCG+AGG + chr5_1:14312164-14312183 Msa0719270:CDS 40.0%
CCATTGTTGTGAATGATGCA+AGG - chr5_1:14312249-14312268 None:intergenic 40.0%
CCTTGCATCATTCACAACAA+TGG + chr5_1:14312246-14312265 Msa0719270:CDS 40.0%
! GGTGGTGTGATTTTCATTGT+TGG + chr5_1:14312280-14312299 Msa0719270:CDS 40.0%
TTGTTGGACAGCTTTGCATT+AGG + chr5_1:14312296-14312315 Msa0719270:CDS 40.0%
AACGAGTGGGAAAAGGAAAT+AGG - chr5_1:14312350-14312369 None:intergenic 40.0%
ACAATGAAACGAGTGGGAAA+AGG - chr5_1:14312357-14312376 None:intergenic 40.0%
! TTTTTCTCGCTTCTGTCTTC+AGG + chr5_1:14312442-14312461 Msa0719270:CDS 40.0%
! TTTTCTCGCTTCTGTCTTCA+GGG + chr5_1:14312443-14312462 Msa0719270:CDS 40.0%
!! GATTTTGCACGCTTTTGGAA+GGG + chr5_1:14312546-14312565 Msa0719270:CDS 40.0%
TTTGGAAACATCAGTGATGC+TGG + chr5_1:14312748-14312767 Msa0719270:CDS 40.0%
GAATCTAAACCAGAAACCAC+CGG - chr5_1:14312823-14312842 None:intergenic 40.0%
!! TGAATGGATTGAGGGATGAA+TGG + chr5_1:14312907-14312926 Msa0719270:three_prime_UTR 40.0%
GCAACAGTAGAAAAAAAGGG+GGG + chr5_1:14312990-14313009 Msa0719270:three_prime_UTR 40.0%
CAACAGTAGAAAAAAAGGGG+GGG + chr5_1:14312991-14313010 Msa0719270:three_prime_UTR 40.0%
CTAGTGTAGTGAGAGTGAGT+AGG - chr5_1:14308419-14308438 None:intergenic 45.0%
ACAGTGGTAAGAGAAGAAGG+AGG - chr5_1:14308515-14308534 None:intergenic 45.0%
AGGACAGTGGTAAGAGAAGA+AGG - chr5_1:14308518-14308537 None:intergenic 45.0%
GCAGCTTCAGAAGTTGCTAA+AGG + chr5_1:14308683-14308702 Msa0719270:CDS 45.0%
ACAGCTCTGTTGTGTAAGTC+AGG - chr5_1:14308731-14308750 None:intergenic 45.0%
TAGGTACTCAACCACTCCAA+TGG + chr5_1:14309405-14309424 Msa0719270:intron 45.0%
TTAGAGGATCTCCATTGGAG+TGG - chr5_1:14309419-14309438 None:intergenic 45.0%
AAGACTCTCCGAAGATAAGG+AGG + chr5_1:14309661-14309680 Msa0719270:intron 45.0%
TCTCCGAAGATAAGGAGGTA+TGG + chr5_1:14309666-14309685 Msa0719270:intron 45.0%
! GTTCGGTGGGTAAATGAAAG+TGG - chr5_1:14309864-14309883 None:intergenic 45.0%
TGATCTATGCTCACCTCCTA+GGG + chr5_1:14310010-14310029 Msa0719270:intron 45.0%
CGGCACTATACATTGTCGTT+AGG - chr5_1:14310970-14310989 None:intergenic 45.0%
ACATCAATTGCTTGGGCTAC+AGG + chr5_1:14311665-14311684 Msa0719270:CDS 45.0%
! GCTGCAACTGTGATGAGTTT+TGG - chr5_1:14311749-14311768 None:intergenic 45.0%
! AGGAGTTTTCTTCTGTCTCC+CGG + chr5_1:14311778-14311797 Msa0719270:CDS 45.0%
! TGACTTTGAAGAATCCAGCC+GGG - chr5_1:14311799-14311818 None:intergenic 45.0%
! GTGACTTTGAAGAATCCAGC+CGG - chr5_1:14311800-14311819 None:intergenic 45.0%
GCTGGATTCTTCAAAGTCAC+AGG + chr5_1:14311800-14311819 Msa0719270:CDS 45.0%
ATCTTCATTCCCTACATCGC+TGG + chr5_1:14311824-14311843 Msa0719270:CDS 45.0%
!! ACAATGGCTATTTTCACGGG+TGG + chr5_1:14312262-14312281 Msa0719270:CDS 45.0%
GCAGTGACAATGAAACGAGT+GGG - chr5_1:14312363-14312382 None:intergenic 45.0%
AGCAGTGACAATGAAACGAG+TGG - chr5_1:14312364-14312383 None:intergenic 45.0%
ATCTTAACCACGCGCAGTAA+AGG - chr5_1:14312391-14312410 None:intergenic 45.0%
TCTATTACGGACACAGTCAC+TGG + chr5_1:14312473-14312492 Msa0719270:CDS 45.0%
CCATTCAGAGCACATCAACA+GGG + chr5_1:14312524-14312543 Msa0719270:CDS 45.0%
! ACAGGGATTTTGCACGCTTT+TGG + chr5_1:14312541-14312560 Msa0719270:CDS 45.0%
! GGATTTTGCACGCTTTTGGA+AGG + chr5_1:14312545-14312564 Msa0719270:CDS 45.0%
GGTGTTAGATTGTGCTCCAT+CGG + chr5_1:14312573-14312592 Msa0719270:CDS 45.0%
GTGTTAGATTGTGCTCCATC+GGG + chr5_1:14312574-14312593 Msa0719270:CDS 45.0%
!! AAAGCACCTTCTTTTCCCGA+TGG - chr5_1:14312592-14312611 None:intergenic 45.0%
! GGTTCACAGTTGGTTCAGTT+GGG + chr5_1:14312656-14312675 Msa0719270:CDS 45.0%
! GCTTTTTGCACTGCTATTGC+TGG + chr5_1:14312709-14312728 Msa0719270:CDS 45.0%
CGATAATGAGAGAAGCTCTC+CGG + chr5_1:14312801-14312820 Msa0719270:CDS 45.0%
! ATGGATTGAGGGATGAATGG+TGG + chr5_1:14312910-14312929 Msa0719270:three_prime_UTR 45.0%
!! AATAAAAATATAAACTTATA+GGG - chr5_1:14309074-14309093 None:intergenic 5.0%
!! AAATAAAAATATAAACTTAT+AGG - chr5_1:14309075-14309094 None:intergenic 5.0%
!! ACAAAAATTAAATTTAATAT+TGG + chr5_1:14309934-14309953 Msa0719270:intron 5.0%
!!! ATTAATCTTTTTTTTTATTT+TGG - chr5_1:14310635-14310654 None:intergenic 5.0%
GTAGTGAGAGTGAGTAGGGT+GGG - chr5_1:14308414-14308433 None:intergenic 50.0%
TGTAGTGAGAGTGAGTAGGG+TGG - chr5_1:14308415-14308434 None:intergenic 50.0%
GAGTAATGGTGAGAGGACAG+TGG - chr5_1:14308531-14308550 None:intergenic 50.0%
!! GGGGGTGTCAGAATGAGTAA+TGG - chr5_1:14308545-14308564 None:intergenic 50.0%
GAGGTAACCGTTGAAGCTGA+AGG + chr5_1:14308605-14308624 Msa0719270:CDS 50.0%
GTAACCGTTGAAGCTGAAGG+TGG + chr5_1:14308608-14308627 Msa0719270:CDS 50.0%
GACACCACCTTCAGCTTCAA+CGG - chr5_1:14308615-14308634 None:intergenic 50.0%
!! TTTTGAGAGCAGTGAGTGCC+AGG - chr5_1:14308959-14308978 None:intergenic 50.0%
TGGCACTCACTGCTCTCAAA+AGG + chr5_1:14308958-14308977 Msa0719270:CDS 50.0%
GGAGTGGTTGAGTACCTACT+AGG - chr5_1:14309403-14309422 None:intergenic 50.0%
GTGATCTATGCTCACCTCCT+AGG + chr5_1:14310009-14310028 Msa0719270:intron 50.0%
TGTCGGCAGTTAGCACATCT+TGG + chr5_1:14310931-14310950 Msa0719270:intron 50.0%
GCCATAGCTGCACCAATTCT+TGG + chr5_1:14311692-14311711 Msa0719270:CDS 50.0%
GCCAAGAATTGGTGCAGCTA+TGG - chr5_1:14311696-14311715 None:intergenic 50.0%
TTCCTTTCCTTCCACCTCGA+CGG + chr5_1:14311716-14311735 Msa0719270:CDS 50.0%
!!! GTTTTGGGAAATTGCCGTCG+AGG - chr5_1:14311733-14311752 None:intergenic 50.0%
CTCATCACAGTTGCAGCAAC+AGG + chr5_1:14311752-14311771 Msa0719270:CDS 50.0%
ACAGTTGCAGCAACAGGTGT+AGG + chr5_1:14311758-14311777 Msa0719270:CDS 50.0%
GCTATGATGCCAGCGATGTA+GGG - chr5_1:14311836-14311855 None:intergenic 50.0%
TGCTATGATGCCAGCGATGT+AGG - chr5_1:14311837-14311856 None:intergenic 50.0%
CTTGAGAGTTGTTCCGGTGA+AGG - chr5_1:14311915-14311934 None:intergenic 50.0%
AGTAGCATGAAGTGAGAGGC+GGG - chr5_1:14311972-14311991 None:intergenic 50.0%
CAGTAGCATGAAGTGAGAGG+CGG - chr5_1:14311973-14311992 None:intergenic 50.0%
CAGCAGTAGCATGAAGTGAG+AGG - chr5_1:14311976-14311995 None:intergenic 50.0%
TCACTTCATGCTACTGCTGC+TGG + chr5_1:14311977-14311996 Msa0719270:CDS 50.0%
!! GCTACTGCTGCTGGTTGTTT+TGG + chr5_1:14311986-14312005 Msa0719270:CDS 50.0%
!!! ACTGCTGCTGGTTGTTTTGG+TGG + chr5_1:14311989-14312008 Msa0719270:CDS 50.0%
GCAAGACCTCCAATAGCATG+AGG - chr5_1:14312217-14312236 None:intergenic 50.0%
GCGCGTGGTTAAGATGAACT+CGG + chr5_1:14312396-14312415 Msa0719270:CDS 50.0%
TCGGTGAAGATGCAGATCGT+TGG + chr5_1:14312415-14312434 Msa0719270:CDS 50.0%
CGGTGAAGATGCAGATCGTT+GGG + chr5_1:14312416-14312435 Msa0719270:CDS 50.0%
TCGCTTCTGTCTTCAGGGTT+TGG + chr5_1:14312448-14312467 Msa0719270:CDS 50.0%
ACGGACACAGTCACTGGAAA+TGG + chr5_1:14312479-14312498 Msa0719270:CDS 50.0%
CGGACACAGTCACTGGAAAT+GGG + chr5_1:14312480-14312499 Msa0719270:CDS 50.0%
GGACACAGTCACTGGAAATG+GGG + chr5_1:14312481-14312500 Msa0719270:CDS 50.0%
TCACTGGAAATGGGGACACT+TGG + chr5_1:14312489-14312508 Msa0719270:CDS 50.0%
GCCATTCAGAGCACATCAAC+AGG + chr5_1:14312523-14312542 Msa0719270:CDS 50.0%
! CCCTGTTGATGTGCTCTGAA+TGG - chr5_1:14312527-14312546 None:intergenic 50.0%
!! GCACGCTTTTGGAAGGGTTT+TGG + chr5_1:14312552-14312571 Msa0719270:CDS 50.0%
TGTGCTCCATCGGGAAAAGA+AGG + chr5_1:14312583-14312602 Msa0719270:CDS 50.0%
TATGCTTGGATGAGAGCTGC+AGG + chr5_1:14312622-14312641 Msa0719270:CDS 50.0%
AGAGCTGCAGGTTTGTGTGT+CGG + chr5_1:14312634-14312653 Msa0719270:CDS 50.0%
TTGTGTGTCGGGTTCACAGT+TGG + chr5_1:14312646-14312665 Msa0719270:CDS 50.0%
! GGGTTCACAGTTGGTTCAGT+TGG + chr5_1:14312655-14312674 Msa0719270:CDS 50.0%
AACGAAGTCCTAATCCGTCC+TGG - chr5_1:14312682-14312701 None:intergenic 50.0%
!! GGACGGATTAGGACTTCGTT+CGG + chr5_1:14312682-14312701 Msa0719270:CDS 50.0%
GGAAACATCAGTGATGCTGG+TGG + chr5_1:14312751-14312770 Msa0719270:CDS 50.0%
TAATGAGAGAAGCTCTCCGG+TGG + chr5_1:14312804-14312823 Msa0719270:CDS 50.0%
GAAGCTGAAGGTGGTGTCCT+TGG + chr5_1:14308617-14308636 Msa0719270:CDS 55.0%
CTTGGCCATGGACATGGACA+CGG + chr5_1:14308635-14308654 Msa0719270:CDS 55.0%
CATGACCGTGTCCATGTCCA+TGG - chr5_1:14308643-14308662 None:intergenic 55.0%
CATGGACATGGACACGGTCA+TGG + chr5_1:14308641-14308660 Msa0719270:CDS 55.0%
CATGGACACGGTCATGGTCA+TGG + chr5_1:14308647-14308666 Msa0719270:CDS 55.0%
CACGGTCATGGTCATGGTCA+AGG + chr5_1:14308653-14308672 Msa0719270:CDS 55.0%
GGTCATGGTCATGGTCAAGG+TGG + chr5_1:14308656-14308675 Msa0719270:CDS 55.0%
GAAATTGCCGTCGAGGTGGA+AGG - chr5_1:14311726-14311745 None:intergenic 55.0%
TTGGGAAATTGCCGTCGAGG+TGG - chr5_1:14311730-14311749 None:intergenic 55.0%
! GTTTTCTTCTGTCTCCCGGC+TGG + chr5_1:14311782-14311801 Msa0719270:CDS 55.0%
ATGCTGCGTGTGAGCTGCAT+TGG - chr5_1:14311873-14311892 None:intergenic 55.0%
GCTACAACCTTTACTGCGCG+TGG + chr5_1:14312381-14312400 Msa0719270:CDS 55.0%
GAGCTGCAGGTTTGTGTGTC+GGG + chr5_1:14312635-14312654 Msa0719270:CDS 55.0%
! ACAGTTGGTTCAGTTGGGCC+AGG + chr5_1:14312661-14312680 Msa0719270:CDS 55.0%
TTGGTTCAGTTGGGCCAGGA+CGG + chr5_1:14312665-14312684 Msa0719270:CDS 55.0%
AGAAGCTCTCCGGTGGTTTC+TGG + chr5_1:14312811-14312830 Msa0719270:CDS 55.0%
! GAGGGATGAATGGTGGTGCA+TGG + chr5_1:14312917-14312936 Msa0719270:three_prime_UTR 55.0%
GAAGGTGGTGTCCTTGGCCA+TGG + chr5_1:14308623-14308642 Msa0719270:CDS 60.0%
GGTGTCCTTGGCCATGGACA+TGG + chr5_1:14308629-14308648 Msa0719270:CDS 60.0%
CGTGTCCATGTCCATGGCCA+AGG - chr5_1:14308637-14308656 None:intergenic 60.0%
TGCCGTCGAGGTGGAAGGAA+AGG - chr5_1:14311721-14311740 None:intergenic 60.0%
! AGCTGCATTGGCGACTGTGC+TGG - chr5_1:14311861-14311880 None:intergenic 60.0%
GCAGCTCACACGCAGCATCT+CGG + chr5_1:14311875-14311894 Msa0719270:CDS 60.0%
CTCATGATCCGCGCCTTCAC+CGG + chr5_1:14311899-14311918 Msa0719270:CDS 60.0%
GAGTTGTTCCGGTGAAGGCG+CGG - chr5_1:14311910-14311929 None:intergenic 60.0%
! CAGTTGGGCCAGGACGGATT+AGG + chr5_1:14312671-14312690 Msa0719270:CDS 60.0%
!! CTGGTGGTGCTGTTGCTGCA+GGG + chr5_1:14312767-14312786 Msa0719270:CDS 60.0%
! CGGTGAAGGCGCGGATCATG+AGG - chr5_1:14311901-14311920 None:intergenic 65.0%
!! GCTGGTGGTGCTGTTGCTGC+AGG + chr5_1:14312766-14312785 Msa0719270:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 14308411 14313238 14308411 ID=Msa0719270;Name=Msa0719270
chr5_1 mRNA 14308411 14313238 14308411 ID=Msa0719270-mRNA-1;Parent=Msa0719270;Name=Msa0719270-mRNA-1;_AED=0.00;_eAED=0.00;_QI=188|1|1|1|1|1|2|374|548
chr5_1 exon 14308411 14308990 14308411 ID=Msa0719270-mRNA-1:exon:5628;Parent=Msa0719270-mRNA-1
chr5_1 exon 14311610 14313238 14311610 ID=Msa0719270-mRNA-1:exon:5629;Parent=Msa0719270-mRNA-1
chr5_1 five_prime_UTR 14308411 14308598 14308411 ID=Msa0719270-mRNA-1:five_prime_utr;Parent=Msa0719270-mRNA-1
chr5_1 CDS 14308599 14308990 14308599 ID=Msa0719270-mRNA-1:cds;Parent=Msa0719270-mRNA-1
chr5_1 CDS 14311610 14312864 14311610 ID=Msa0719270-mRNA-1:cds;Parent=Msa0719270-mRNA-1
chr5_1 three_prime_UTR 14312865 14313238 14312865 ID=Msa0719270-mRNA-1:three_prime_utr;Parent=Msa0719270-mRNA-1
Gene Sequence

>Msa0719270

ATGAAAGAGGTAACCGTTGAAGCTGAAGGTGGTGTCCTTGGCCATGGACATGGACACGGTCATGGTCATGGTCAAGGTGGTGTAGCAGCTTCAGAAGTTGCTAAAGGTAACAACAACAATACTACTAGACCTGACTTACACAACAGAGCTGTGAAAATTTTGAGAGCTAGAGAAGCTTATAATGGTTATGAAGAAGTTGGTGAAAAACCTTCTAGATTTGAAACTTTTGGTTGGTATCTTTATGAGTTTTGCTTCTACTTTGTTCAAACTGTACTTGTTCCTGTTGTCTTTCCTCTCATTATCAGTCAGCTTCAAAGTCCACCTACTGTTTCACTTCAAGAATGGAACAAAACTCATCCTGGCACTCACTGCTCTCAAAAGGAATTTCATTTGTATAACAAACTCACTGGACACACCATAATTTCAAAGTTTTCAGCATTGGAATGGACATCAATTGCTTGGGCTACAGGTCTAGCCATAGCTGCACCAATTCTTGGCTTCCTTTCCTTCCACCTCGACGGCAATTTCCCAAAACTCATCACAGTTGCAGCAACAGGTGTAGGAGTTTTCTTCTGTCTCCCGGCTGGATTCTTCAAAGTCACAGGCATCTTCATTCCCTACATCGCTGGCATCATAGCAGCCAGCACAGTCGCCAATGCAGCTCACACGCAGCATCTCGGCCTCATGATCCGCGCCTTCACCGGAACAACTCTCAAGAAAGCACAGTTTTTCATTAGACAAGGTGTTTCATCCCGCCTCTCACTTCATGCTACTGCTGCTGGTTGTTTTGGTGGTGCTTTGATTTCAGCTTTCACTTACCATATGATACACGAACTCGATGAAAATAAGAGCGATATTATGAGTCTTTGGGTTGTTTCGATTTTCAGTGGTTTAATTTGGCTTGTTGGGATCTTGCATTTAGCTACAGCTACAAGTAGAACCACTGATTCGATCTCATTTTCGTCGAGGCTACACCCTTTTTCCATCTTCAAATATCCTCATGCTATTGGAGGTCTTGCTAGTGTTTTCCTTGCATCATTCACAACAATGGCTATTTTCACGGGTGGTGTGATTTTCATTGTTGGACAGCTTTGCATTAGGCCATTGCATTTGCTTTTGTTCTGGTTAACCTATTTCCTTTTCCCACTCGTTTCATTGTCACTGCTACAACCTTTACTGCGCGTGGTTAAGATGAACTCGGTGAAGATGCAGATCGTTGGGTTCTTTTTCTCGCTTCTGTCTTCAGGGTTTGGATTCTATTACGGACACAGTCACTGGAAATGGGGACACTTGGTTCTTTTCGCTGCCATTCAGAGCACATCAACAGGGATTTTGCACGCTTTTGGAAGGGTTTTGGTGTTAGATTGTGCTCCATCGGGAAAAGAAGGTGCTTTCTCTATATGGTATGCTTGGATGAGAGCTGCAGGTTTGTGTGTCGGGTTCACAGTTGGTTCAGTTGGGCCAGGACGGATTAGGACTTCGTTCGGAGTTGCTTTTTGCACTGCTATTGCTGGAATTGTTGTGTTGCTATTTGGAAACATCAGTGATGCTGGTGGTGCTGTTGCTGCAGGGAATGTAAGTGACGATAATGAGAGAAGCTCTCCGGTGGTTTCTGGTTTAGATTCGAAAGAAGCTGCTCGAGTTTGA

Protein sequence

>Msa0719270

MKEVTVEAEGGVLGHGHGHGHGHGQGGVAASEVAKGNNNNTTRPDLHNRAVKILRAREAYNGYEEVGEKPSRFETFGWYLYEFCFYFVQTVLVPVVFPLIISQLQSPPTVSLQEWNKTHPGTHCSQKEFHLYNKLTGHTIISKFSALEWTSIAWATGLAIAAPILGFLSFHLDGNFPKLITVAATGVGVFFCLPAGFFKVTGIFIPYIAGIIAASTVANAAHTQHLGLMIRAFTGTTLKKAQFFIRQGVSSRLSLHATAAGCFGGALISAFTYHMIHELDENKSDIMSLWVVSIFSGLIWLVGILHLATATSRTTDSISFSSRLHPFSIFKYPHAIGGLASVFLASFTTMAIFTGGVIFIVGQLCIRPLHLLLFWLTYFLFPLVSLSLLQPLLRVVKMNSVKMQIVGFFFSLLSSGFGFYYGHSHWKWGHLVLFAAIQSTSTGILHAFGRVLVLDCAPSGKEGAFSIWYAWMRAAGLCVGFTVGSVGPGRIRTSFGVAFCTAIAGIVVLLFGNISDAGGAVAAGNVSDDNERSSPVVSGLDSKEAARV*