Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1406090 | XP_024641885.1 | 99.379 | 322 | 0 | 1 | 1 | 322 | 1 | 320 | 0.0 | 647 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1406090 | sp|Q9SZ96|URGT5_ARATH | 83.438 | 320 | 53 | 0 | 1 | 320 | 1 | 320 | 0.0 | 570 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1406090 | G7IBV3 | 99.379 | 322 | 0 | 1 | 1 | 322 | 1 | 320 | 0.0 | 647 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0091090 | Msa1406090 | -0.812095 | 5.036300e-51 | -8.615850e-47 |
| Msa1347390 | Msa1406090 | 0.806720 | 7.171649e-50 | -8.615850e-47 |
| Msa1402010 | Msa1406090 | 0.817001 | 4.135282e-52 | -8.615850e-47 |
| Msa1406090 | Msa1436620 | 0.835659 | 1.475478e-56 | -8.615850e-47 |
| Msa1406090 | Msa1458790 | 0.810577 | 1.075501e-50 | -8.615850e-47 |
| Msa1406090 | Msa1462780 | 0.800473 | 1.417702e-48 | -8.615850e-47 |
| Msa0605530 | Msa1406090 | 0.805995 | 1.019952e-49 | -8.615850e-47 |
| Msa0608820 | Msa1406090 | 0.803510 | 3.368860e-49 | -8.615850e-47 |
| Msa0630440 | Msa1406090 | 0.864749 | 9.716039e-65 | -8.615850e-47 |
| Msa0657110 | Msa1406090 | -0.802250 | 6.132771e-49 | -8.615850e-47 |
| Msa0689830 | Msa1406090 | 0.850507 | 1.623610e-60 | -8.615850e-47 |
| Msa0701090 | Msa1406090 | -0.803426 | 3.505198e-49 | -8.615850e-47 |
| Msa0719270 | Msa1406090 | 0.842265 | 2.874155e-58 | -8.615850e-47 |
| Msa0732970 | Msa1406090 | 0.801464 | 8.893153e-49 | -8.615850e-47 |
| Msa0746650 | Msa1406090 | 0.803605 | 3.218345e-49 | -8.615850e-47 |
| Msa0775660 | Msa1406090 | 0.812790 | 3.550492e-51 | -8.615850e-47 |
| Msa0799450 | Msa1406090 | 0.846306 | 2.359972e-59 | -8.615850e-47 |
| Msa0827370 | Msa1406090 | 0.982762 | 6.206079e-156 | -8.615850e-47 |
| Msa0837710 | Msa1406090 | 0.834146 | 3.548817e-56 | -8.615850e-47 |
| Msa0838620 | Msa1406090 | -0.803726 | 3.037685e-49 | -8.615850e-47 |
| Msa0840520 | Msa1406090 | 0.841197 | 5.498255e-58 | -8.615850e-47 |
| Msa0173250 | Msa1406090 | 0.806348 | 8.591427e-50 | -8.615850e-47 |
| Msa0195230 | Msa1406090 | 0.829924 | 3.921401e-55 | -8.615850e-47 |
| Msa0195260 | Msa1406090 | 0.822778 | 1.974998e-53 | -8.615850e-47 |
| Msa0204950 | Msa1406090 | 0.806536 | 7.843170e-50 | -8.615850e-47 |
| Msa1339200 | Msa1406090 | 0.810510 | 1.112302e-50 | -8.615850e-47 |
| Msa0368640 | Msa1406090 | 0.811520 | 6.720408e-51 | -8.615850e-47 |
| Msa0386880 | Msa1406090 | 0.817940 | 2.540148e-52 | -8.615850e-47 |
| Msa0413170 | Msa1406090 | 0.802997 | 4.301250e-49 | -8.615850e-47 |
| Msa0427420 | Msa1406090 | 0.811136 | 8.142739e-51 | -8.615850e-47 |
| Msa0427480 | Msa1406090 | 0.809254 | 2.072200e-50 | -8.615850e-47 |
| Msa0982730 | Msa1406090 | 0.814678 | 1.362950e-51 | -8.615850e-47 |
| Msa1041170 | Msa1406090 | 0.804405 | 2.194564e-49 | -8.615850e-47 |
| Msa0240540 | Msa1406090 | 0.803920 | 2.768317e-49 | -8.615850e-47 |
| Msa0276850 | Msa1406090 | 0.811501 | 6.784229e-51 | -8.615850e-47 |
| Msa0276860 | Msa1406090 | 0.827929 | 1.192256e-54 | -8.615850e-47 |
| Msa0279000 | Msa1406090 | 0.820175 | 7.882456e-53 | -8.615850e-47 |
| Msa0291150 | Msa1406090 | 0.806272 | 8.913905e-50 | -8.615850e-47 |
| Msa0320600 | Msa1406090 | 0.820847 | 5.523834e-53 | -8.615850e-47 |
| Msa0326710 | Msa1406090 | 0.816695 | 4.843309e-52 | -8.615850e-47 |
| Msa1124210 | Msa1406090 | 0.842306 | 2.802955e-58 | -8.615850e-47 |
| Msa1147700 | Msa1406090 | 0.805128 | 1.550153e-49 | -8.615850e-47 |
| Msa1155100 | Msa1406090 | 0.802362 | 5.815372e-49 | -8.615850e-47 |
| Msa0484210 | Msa1406090 | -0.806243 | 9.043910e-50 | -8.615850e-47 |
| Msa0567610 | Msa1406090 | 0.817619 | 3.001438e-52 | -8.615850e-47 |
| Msa0574900 | Msa1406090 | 0.812420 | 4.277515e-51 | -8.615850e-47 |
| Msa0851850 | Msa1406090 | 0.802084 | 6.635870e-49 | -8.615850e-47 |
| Msa0930770 | Msa1406090 | 0.832996 | 6.871478e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1406090 | MtrunA17_Chr1g0201531 | 99.379 | 322 | 0 | 1 | 1 | 322 | 1 | 320 | 0.0 | 647 |
| Msa1406090 | MtrunA17_Chr3g0129401 | 78.816 | 321 | 68 | 0 | 1 | 321 | 1 | 321 | 0.0 | 535 |
| Msa1406090 | MtrunA17_Chr8g0383381 | 73.765 | 324 | 82 | 1 | 1 | 321 | 1 | 324 | 0.0 | 503 |
| Msa1406090 | MtrunA17_Chr1g0157501 | 53.571 | 308 | 132 | 4 | 17 | 319 | 15 | 316 | 2.90e-94 | 283 |
| Msa1406090 | MtrunA17_Chr5g0393381 | 50.313 | 320 | 153 | 5 | 8 | 322 | 7 | 325 | 2.21e-92 | 279 |
| Msa1406090 | MtrunA17_Chr6g0467391 | 37.582 | 306 | 190 | 1 | 16 | 321 | 13 | 317 | 3.73e-61 | 197 |
| Msa1406090 | MtrunA17_Chr6g0467371 | 37.582 | 306 | 190 | 1 | 16 | 321 | 13 | 317 | 3.73e-61 | 197 |
| Msa1406090 | MtrunA17_Chr2g0326791 | 38.095 | 294 | 181 | 1 | 16 | 309 | 13 | 305 | 1.12e-60 | 197 |
| Msa1406090 | MtrunA17_Chr4g0028931 | 36.860 | 293 | 184 | 1 | 16 | 308 | 13 | 304 | 4.61e-57 | 188 |
| Msa1406090 | MtrunA17_Chr3g0128951 | 37.218 | 266 | 166 | 1 | 32 | 297 | 29 | 293 | 2.20e-52 | 176 |
| Msa1406090 | MtrunA17_Chr3g0128961 | 33.651 | 315 | 183 | 3 | 32 | 321 | 29 | 342 | 1.17e-49 | 169 |
| Msa1406090 | MtrunA17_Chr2g0298931 | 27.329 | 322 | 222 | 4 | 4 | 318 | 45 | 361 | 4.93e-26 | 106 |
| Msa1406090 | MtrunA17_Chr5g0446851 | 27.576 | 330 | 216 | 6 | 4 | 320 | 46 | 365 | 5.18e-25 | 103 |
| Msa1406090 | MtrunA17_Chr3g0114581 | 28.037 | 321 | 199 | 9 | 18 | 321 | 23 | 328 | 1.24e-16 | 79.3 |
| Msa1406090 | MtrunA17_Chr1g0160071 | 27.692 | 325 | 196 | 11 | 18 | 320 | 22 | 329 | 3.55e-16 | 78.2 |
| Msa1406090 | MtrunA17_Chr3g0139091 | 25.784 | 287 | 197 | 8 | 23 | 300 | 24 | 303 | 5.46e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1406090 | AT4G09810.1 | 83.438 | 320 | 53 | 0 | 1 | 320 | 1 | 320 | 0.0 | 570 |
| Msa1406090 | AT1G34020.2 | 84.688 | 320 | 49 | 0 | 1 | 320 | 1 | 320 | 0.0 | 548 |
| Msa1406090 | AT1G34020.1 | 84.688 | 320 | 49 | 0 | 1 | 320 | 1 | 320 | 0.0 | 548 |
| Msa1406090 | AT1G34020.3 | 84.688 | 320 | 49 | 0 | 1 | 320 | 1 | 320 | 0.0 | 548 |
| Msa1406090 | AT4G39390.1 | 78.056 | 319 | 70 | 0 | 2 | 320 | 7 | 325 | 0.0 | 505 |
| Msa1406090 | AT4G39390.2 | 78.056 | 319 | 70 | 0 | 2 | 320 | 7 | 325 | 0.0 | 505 |
| Msa1406090 | AT4G39390.3 | 78.056 | 319 | 70 | 0 | 2 | 320 | 3 | 321 | 0.0 | 504 |
| Msa1406090 | AT4G09810.2 | 83.333 | 264 | 44 | 0 | 58 | 321 | 1 | 264 | 5.03e-170 | 473 |
| Msa1406090 | AT4G09810.3 | 84.889 | 225 | 34 | 0 | 1 | 225 | 1 | 225 | 1.03e-143 | 405 |
| Msa1406090 | AT5G42420.1 | 51.342 | 298 | 142 | 2 | 2 | 297 | 3 | 299 | 8.11e-98 | 293 |
| Msa1406090 | AT1G21070.1 | 50.779 | 321 | 152 | 4 | 1 | 318 | 1 | 318 | 6.34e-97 | 290 |
| Msa1406090 | AT1G76670.2 | 51.746 | 315 | 139 | 4 | 6 | 308 | 5 | 318 | 1.25e-95 | 287 |
| Msa1406090 | AT1G76670.1 | 51.746 | 315 | 139 | 4 | 6 | 308 | 5 | 318 | 1.25e-95 | 287 |
| Msa1406090 | AT1G06890.2 | 37.415 | 294 | 179 | 3 | 32 | 322 | 29 | 320 | 1.05e-56 | 187 |
| Msa1406090 | AT1G06890.1 | 37.415 | 294 | 179 | 3 | 32 | 322 | 29 | 320 | 1.05e-56 | 187 |
| Msa1406090 | AT1G06890.3 | 37.415 | 294 | 179 | 3 | 32 | 322 | 29 | 320 | 1.36e-56 | 187 |
| Msa1406090 | AT1G06890.4 | 37.415 | 294 | 179 | 3 | 32 | 322 | 29 | 320 | 1.58e-56 | 187 |
| Msa1406090 | AT2G30460.1 | 39.474 | 266 | 160 | 1 | 32 | 297 | 29 | 293 | 6.32e-56 | 185 |
| Msa1406090 | AT2G30460.2 | 39.474 | 266 | 160 | 1 | 32 | 297 | 29 | 293 | 6.32e-56 | 185 |
| Msa1406090 | AT2G28315.1 | 35.220 | 318 | 193 | 3 | 17 | 322 | 14 | 330 | 7.80e-55 | 182 |
| Msa1406090 | AT2G28315.2 | 35.932 | 295 | 188 | 1 | 17 | 311 | 14 | 307 | 1.71e-54 | 181 |
| Msa1406090 | AT2G30460.3 | 38.583 | 254 | 155 | 1 | 44 | 297 | 20 | 272 | 1.56e-50 | 171 |
| Msa1406090 | AT2G30460.6 | 38.583 | 254 | 155 | 1 | 44 | 297 | 20 | 272 | 1.56e-50 | 171 |
| Msa1406090 | AT2G30460.5 | 38.583 | 254 | 155 | 1 | 44 | 297 | 20 | 272 | 1.56e-50 | 171 |
| Msa1406090 | AT5G42420.2 | 51.240 | 121 | 58 | 1 | 177 | 297 | 113 | 232 | 4.73e-35 | 129 |
| Msa1406090 | AT5G42420.2 | 48.598 | 107 | 53 | 1 | 2 | 106 | 3 | 109 | 1.87e-24 | 100 |
| Msa1406090 | AT2G30460.4 | 39.583 | 192 | 116 | 0 | 32 | 223 | 29 | 220 | 5.72e-34 | 127 |
| Msa1406090 | AT5G55950.4 | 31.206 | 282 | 185 | 4 | 20 | 297 | 3 | 279 | 1.03e-27 | 110 |
| Msa1406090 | AT5G55950.1 | 31.206 | 282 | 185 | 4 | 20 | 297 | 63 | 339 | 1.80e-27 | 111 |
| Msa1406090 | AT5G55950.3 | 29.520 | 271 | 172 | 4 | 36 | 297 | 1 | 261 | 7.89e-22 | 94.4 |
| Msa1406090 | AT5G55950.2 | 31.651 | 218 | 141 | 3 | 20 | 233 | 63 | 276 | 4.42e-21 | 92.0 |
| Msa1406090 | AT5G57100.1 | 24.834 | 302 | 214 | 5 | 3 | 297 | 51 | 346 | 4.48e-19 | 87.4 |
| Msa1406090 | AT5G57100.2 | 28.866 | 194 | 132 | 2 | 20 | 208 | 70 | 262 | 8.38e-16 | 77.0 |
| Msa1406090 | AT1G77610.1 | 26.935 | 323 | 199 | 10 | 18 | 320 | 17 | 322 | 4.79e-14 | 72.4 |
| Msa1406090 | AT5G57100.3 | 30.120 | 166 | 108 | 3 | 3 | 161 | 51 | 215 | 3.06e-13 | 69.3 |
| Msa1406090 | AT1G21870.1 | 28.173 | 323 | 195 | 14 | 18 | 320 | 23 | 328 | 3.11e-13 | 70.1 |
Find 103 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAATCTTCATGTAGTTAT+AGG | 0.189055 | tig0023189:-7670 | Msa1406090:CDS |
| GAGCATAGGTATTGTTCTTT+TGG | 0.204855 | tig0023189:-9772 | Msa1406090:CDS |
| ACTAAGTTCTTTCAACCTTT+TGG | 0.208492 | tig0023189:-8509 | Msa1406090:CDS |
| GGCTGGATCACTATTGTTAT+TGG | 0.217609 | tig0023189:-8467 | Msa1406090:CDS |
| TTAAATTTGATTTCTTGTTT+TGG | 0.254326 | tig0023189:-7386 | Msa1406090:three_prime_UTR |
| TTTGCTAACTTCTCTATTGT+TGG | 0.273526 | tig0023189:-10003 | Msa1406090:CDS |
| TATTTGAAATTAAACCTTAC+TGG | 0.279006 | tig0023189:-7440 | Msa1406090:three_prime_UTR |
| ATCTGCCAATGCAGATAAAT+TGG | 0.283951 | tig0023189:+7779 | None:intergenic |
| TTCTTCTCAGCTTTGCTTGA+AGG | 0.285443 | tig0023189:+10381 | None:intergenic |
| TGGGCCCTCTTCTAGACTAT+TGG | 0.285839 | tig0023189:-8447 | Msa1406090:CDS |
| GGTGGTTATGGCTTCAGTTT+TGG | 0.294456 | tig0023189:-10279 | Msa1406090:intron |
| CATTGTAAACAAAGCTTTGA+TGG | 0.302927 | tig0023189:-10301 | Msa1406090:CDS |
| ACTAGCTGATATCTCCTTAT+AGG | 0.304873 | tig0023189:-7361 | Msa1406090:three_prime_UTR |
| TACAGGGATCATACTCAATT+TGG | 0.310691 | tig0023189:+9851 | None:intergenic |
| CTGCTTGTTGGAAGTTTGTT+TGG | 0.312293 | tig0023189:-9826 | Msa1406090:CDS |
| TTCCAGGGAGCATACCTATA+AGG | 0.348467 | tig0023189:+7347 | None:intergenic |
| CTATCATGACGCTCGTACTA+CGG | 0.348850 | tig0023189:-10086 | Msa1406090:CDS |
| AAAGCTTTGATGGGTGGTTA+TGG | 0.350738 | tig0023189:-10291 | Msa1406090:CDS |
| TGTACTCCACACTGCTATAA+AGG | 0.354411 | tig0023189:+9692 | None:intergenic |
| TTAATCTTCATGTAGTTATA+GGG | 0.355141 | tig0023189:-7669 | Msa1406090:CDS |
| TCTTCATATGTCCAAGTACT+TGG | 0.370729 | tig0023189:+7740 | None:intergenic |
| ACAGCAGGATAGTTGATTCT+AGG | 0.379481 | tig0023189:-7477 | Msa1406090:three_prime_UTR |
| GCTGGATCACTATTGTTATT+GGG | 0.390290 | tig0023189:-8466 | Msa1406090:CDS |
| AGATTGTTGTTAATTGTGTT+TGG | 0.399409 | tig0023189:-11381 | Msa1406090:five_prime_UTR |
| GAGATCCGTGTGAAGTTTGA+AGG | 0.406091 | tig0023189:-10422 | Msa1406090:five_prime_UTR |
| ACTTCCAACAAGCAGGATAC+AGG | 0.412593 | tig0023189:+9834 | None:intergenic |
| TGAAAGTGGAGGGAATGTTA+TGG | 0.419562 | tig0023189:-10458 | Msa1406090:five_prime_UTR |
| AAAGAAAGGTGGGGTGTGTT+GGG | 0.420540 | tig0023189:+11269 | None:intergenic |
| TAAAATAATTAAAACCAGTA+AGG | 0.425675 | tig0023189:+7426 | None:intergenic |
| AAAAGAAAGGTGGGGTGTGT+TGG | 0.426524 | tig0023189:+11268 | None:intergenic |
| GCTGTATCTTTCCAAGTACT+TGG | 0.427096 | tig0023189:-7751 | Msa1406090:CDS |
| GCCTGCAGCTACAACGTTAA+CGG | 0.427426 | tig0023189:-10130 | Msa1406090:intron |
| GATCCCTGTATCCTGCTTGT+TGG | 0.429832 | tig0023189:-9838 | Msa1406090:CDS |
| GACGCTCGTACTACGGGTGC+TGG | 0.431582 | tig0023189:-10079 | Msa1406090:CDS |
| CTCAGCCAATTTATCTGCAT+TGG | 0.439399 | tig0023189:-7784 | Msa1406090:CDS |
| GATTGTTGTTAATTGTGTTT+GGG | 0.443324 | tig0023189:-11380 | Msa1406090:five_prime_UTR |
| TTCAATGTTGTCACATCTGT+TGG | 0.444323 | tig0023189:-10330 | Msa1406090:CDS |
| TGAGGTTGAAAGGAGTTGTA+TGG | 0.444590 | tig0023189:+11302 | None:intergenic |
| CATCCATGCCGCAGCATCTA+CGG | 0.452040 | tig0023189:+10353 | None:intergenic |
| ACAGTATTCACTCATTATGA+TGG | 0.453531 | tig0023189:-7528 | Msa1406090:three_prime_UTR |
| TTGCTTATTTGCTTTGCAGC+AGG | 0.454252 | tig0023189:+11339 | None:intergenic |
| TTCAAGCAAAGCTGAGAAGA+AGG | 0.460573 | tig0023189:-10379 | Msa1406090:CDS |
| TATCATGACGCTCGTACTAC+GGG | 0.465542 | tig0023189:-10085 | Msa1406090:CDS |
| AGTTTAATGTGGAACTCAGT+TGG | 0.467237 | tig0023189:-9970 | Msa1406090:CDS |
| TTGCAAAAGTTGAGTACAGC+AGG | 0.496842 | tig0023189:-7492 | Msa1406090:three_prime_UTR |
| CCTGCAGCTACAACGTTAAC+GGG | 0.498929 | tig0023189:-10129 | Msa1406090:intron |
| GGGATGATAATAGCTGTTGT+TGG | 0.500626 | tig0023189:-7649 | Msa1406090:CDS |
| CTCCAACGTTCCTTTCCACC+CGG | 0.506064 | tig0023189:+7595 | None:intergenic |
| TTCTTACGATGCAGCCTCCT+CGG | 0.506728 | tig0023189:-8398 | Msa1406090:intron |
| CAACTGCAATAGTGCATGAC+AGG | 0.512316 | tig0023189:+7815 | None:intergenic |
| CTCATCAAAGCCGGGTGGAA+AGG | 0.518918 | tig0023189:-7605 | Msa1406090:CDS |
| GTCAACCAATAGTCTAGAAG+AGG | 0.519084 | tig0023189:+8442 | None:intergenic |
| TGGTAATGCCTCATCAAAGC+CGG | 0.520386 | tig0023189:-7614 | Msa1406090:CDS |
| CATACAGCACCCGCACAGGC+TGG | 0.523624 | tig0023189:-8484 | Msa1406090:CDS |
| ACTCCTGCATTATTTGAAAG+TGG | 0.523920 | tig0023189:-10472 | Msa1406090:five_prime_UTR |
| CCTCCACTTTCAAATAATGC+AGG | 0.524868 | tig0023189:+10469 | None:intergenic |
| TATTTGCTTTGCAGCAGGAG+TGG | 0.527662 | tig0023189:+11344 | None:intergenic |
| CTTTCCACCCGGCTTTGATG+AGG | 0.529809 | tig0023189:+7606 | None:intergenic |
| AAGAATGATCTGAGGTTGAA+AGG | 0.535238 | tig0023189:+11292 | None:intergenic |
| ATTGTAAACAAAGCTTTGAT+GGG | 0.537492 | tig0023189:-10300 | Msa1406090:CDS |
| CTGTCATGCACTATTGCAGT+TGG | 0.539337 | tig0023189:-7814 | Msa1406090:CDS |
| CTCCTTATAGGTATGCTCCC+TGG | 0.542778 | tig0023189:-7349 | Msa1406090:three_prime_UTR |
| CAGCCGTAGATGCTGCGGCA+TGG | 0.544538 | tig0023189:-10356 | Msa1406090:CDS |
| AAAAGGAAGCTAACCGTGGA+TGG | 0.545489 | tig0023189:+11233 | None:intergenic |
| CTGCATTATTTGAAAGTGGA+GGG | 0.545733 | tig0023189:-10468 | Msa1406090:five_prime_UTR |
| AATTTAAAGAATTACAAATG+AGG | 0.546496 | tig0023189:+7402 | None:intergenic |
| AATAGTGATCCAGCCTGTGC+GGG | 0.549143 | tig0023189:+8475 | None:intergenic |
| TGTCATGCACTATTGCAGTT+GGG | 0.557390 | tig0023189:-7813 | Msa1406090:CDS |
| GCAGATAAATTGGCTGAGGT+TGG | 0.563030 | tig0023189:+7789 | None:intergenic |
| TGTGAATAGAAAAGAAAGGT+GGG | 0.563376 | tig0023189:+11259 | None:intergenic |
| GACGTAAGTGTAAACATGAA+AGG | 0.563776 | tig0023189:-9726 | Msa1406090:CDS |
| TCTATTCACACCTCCATCCA+CGG | 0.564926 | tig0023189:-11246 | Msa1406090:intron |
| GTAAACAAAGCTTTGATGGG+TGG | 0.567414 | tig0023189:-10297 | Msa1406090:CDS |
| CGGGTGCTGTATGTCCCAAA+AGG | 0.569410 | tig0023189:+8494 | None:intergenic |
| AGTATGTTCATTATCTTCAA+CGG | 0.576478 | tig0023189:-8540 | Msa1406090:CDS |
| GGTAATGCCTCATCAAAGCC+GGG | 0.576676 | tig0023189:-7613 | Msa1406090:CDS |
| TCGGACAATGGAAGATGAGA+TGG | 0.578480 | tig0023189:+10045 | None:intergenic |
| CCTGCATTATTTGAAAGTGG+AGG | 0.582054 | tig0023189:-10469 | Msa1406090:five_prime_UTR |
| CTTCCAACAAGCAGGATACA+GGG | 0.585722 | tig0023189:+9835 | None:intergenic |
| TTAATCCTTCAAACTTCACA+CGG | 0.586224 | tig0023189:+10417 | None:intergenic |
| GGGACATACAGCACCCGCAC+AGG | 0.586372 | tig0023189:-8488 | Msa1406090:CDS |
| GAATGAATGTCAGTTTAATG+TGG | 0.588693 | tig0023189:-9981 | Msa1406090:CDS |
| ACAATGGAAGATGAGATGGC+TGG | 0.591393 | tig0023189:+10049 | None:intergenic |
| CAAACAAACTTCCAACAAGC+AGG | 0.593504 | tig0023189:+9827 | None:intergenic |
| GTGTGAATAGAAAAGAAAGG+TGG | 0.595894 | tig0023189:+11258 | None:intergenic |
| ACGCTCGTACTACGGGTGCT+GGG | 0.598648 | tig0023189:-10078 | Msa1406090:CDS |
| CAATAGTGATCCAGCCTGTG+CGG | 0.599047 | tig0023189:+8474 | None:intergenic |
| AAGTGGAGGGAATGTTATGG+AGG | 0.604217 | tig0023189:-10455 | Msa1406090:five_prime_UTR |
| GTTGTTGGAATGATGTGGTA+TGG | 0.618331 | tig0023189:-7634 | Msa1406090:CDS |
| AGAGACACAAAACTGAGCAT+AGG | 0.624573 | tig0023189:-9786 | Msa1406090:CDS |
| GAAGGCAGCCGTAGATGCTG+CGG | 0.628788 | tig0023189:-10361 | Msa1406090:CDS |
| GAGGTGTGAATAGAAAAGAA+AGG | 0.629980 | tig0023189:+11255 | None:intergenic |
| AGCCGGGTGGAAAGGAACGT+TGG | 0.631506 | tig0023189:-7597 | Msa1406090:CDS |
| TCAACCAATAGTCTAGAAGA+GGG | 0.636120 | tig0023189:+8443 | None:intergenic |
| CAATGCAGATAAATTGGCTG+AGG | 0.640425 | tig0023189:+7785 | None:intergenic |
| CTACCAGCAAAACAGAAAGT+CGG | 0.648557 | tig0023189:-7561 | Msa1406090:CDS |
| AGGAAGCTAACCGTGGATGG+AGG | 0.649164 | tig0023189:+11236 | None:intergenic |
| TTGCTGCCTTTATAGCAGTG+TGG | 0.662093 | tig0023189:-9698 | Msa1406090:CDS |
| TTATCCAGAACTTACCGAGG+AGG | 0.697126 | tig0023189:+8384 | None:intergenic |
| GTGTTGGGAAGAATGATCTG+AGG | 0.705801 | tig0023189:+11284 | None:intergenic |
| GTGAATAGAAAAGAAAGGTG+GGG | 0.716134 | tig0023189:+11260 | None:intergenic |
| AATGCCTCATCAAAGCCGGG+TGG | 0.721446 | tig0023189:-7610 | Msa1406090:CDS |
| TAGCTGTTGTTGGAATGATG+TGG | 0.725934 | tig0023189:-7639 | Msa1406090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATTTGAATTTTTGAAT+TGG | - | tig0023189:7818-7837 | Msa1406090:CDS | 10.0% |
| !! | AAAAGTAAATAAACAATTTA+AGG | + | tig0023189:9489-9508 | None:intergenic | 10.0% |
| !! | AATATAAATTTGATATAACA+AGG | + | tig0023189:10459-10478 | None:intergenic | 10.0% |
| !!! | TTTTATTATATTTTGAACAT+TGG | - | tig0023189:10620-10639 | Msa1406090:intron | 10.0% |
| !! | TAAAAGAAAATCATACTTAA+AGG | + | tig0023189:8548-8567 | None:intergenic | 15.0% |
| !!! | TTTTAGACTTTCAAATTTAT+CGG | - | tig0023189:9509-9528 | Msa1406090:intron | 15.0% |
| !! | AAATTAAACATATAGATACT+TGG | - | tig0023189:10360-10379 | Msa1406090:CDS | 15.0% |
| !!! | ACAATACTTGTTTTAATAAT+GGG | - | tig0023189:10982-11001 | Msa1406090:intron | 15.0% |
| !! | TAAAATAATTAAAACCAGTA+AGG | + | tig0023189:11277-11296 | None:intergenic | 15.0% |
| !! | AATTTAAAGAATTACAAATG+AGG | + | tig0023189:11301-11320 | None:intergenic | 15.0% |
| !!! | TTAAATTTGATTTCTTGTTT+TGG | - | tig0023189:11314-11333 | Msa1406090:five_prime_UTR | 15.0% |
| !!! | AAATAAATTCATTTTGATCA+TGG | + | tig0023189:11393-11412 | None:intergenic | 15.0% |
| !! | TAAGAAAAATGAAAGAGAAA+AGG | + | tig0023189:7487-7506 | None:intergenic | 20.0% |
| !! | ATCAATCCAAAAAATGAAAA+AGG | + | tig0023189:7550-7569 | None:intergenic | 20.0% |
| !!! | TTGAATTTTTGAATTGGTTT+AGG | - | tig0023189:7824-7843 | Msa1406090:CDS | 20.0% |
| !! | AAAAACTATTGTATTCAGAT+AGG | + | tig0023189:8081-8100 | None:intergenic | 20.0% |
| !! | CAGAAATATCATTAAGAAAT+TGG | + | tig0023189:8459-8478 | None:intergenic | 20.0% |
| !!! | AGTTTTATGATATATCAACT+GGG | + | tig0023189:8504-8523 | None:intergenic | 20.0% |
| !!! | AAGTTTTATGATATATCAAC+TGG | + | tig0023189:8505-8524 | None:intergenic | 20.0% |
| !!! | GAAAACAAATTTTAGAAGTT+CGG | + | tig0023189:8677-8696 | None:intergenic | 20.0% |
| !!! | AAAGAAACAAATTTAACTTC+TGG | + | tig0023189:8810-8829 | None:intergenic | 20.0% |
| !!! | TGTATTTGTTTCTTAGAATT+TGG | - | tig0023189:9084-9103 | Msa1406090:intron | 20.0% |
| !!! | GTATTTGTTTCTTAGAATTT+GGG | - | tig0023189:9085-9104 | Msa1406090:intron | 20.0% |
| !! | TTTAGACTTTCAAATTTATC+GGG | - | tig0023189:9510-9529 | Msa1406090:intron | 20.0% |
| !!! | TATATAAATTTAAAGCAAGC+AGG | + | tig0023189:10557-10576 | None:intergenic | 20.0% |
| !!! | ATTATATTTTGAACATTGGT+AGG | - | tig0023189:10624-10643 | Msa1406090:intron | 20.0% |
| !! | TATAGAACATAATTGAGAAT+TGG | - | tig0023189:10776-10795 | Msa1406090:intron | 20.0% |
| !!! | GACAATACTTGTTTTAATAA+TGG | - | tig0023189:10981-11000 | Msa1406090:intron | 20.0% |
| !! | TTAATCTTCATGTAGTTATA+GGG | - | tig0023189:11031-11050 | Msa1406090:intron | 20.0% |
| !!! | TATTTGAAATTAAACCTTAC+TGG | - | tig0023189:11260-11279 | Msa1406090:five_prime_UTR | 20.0% |
| !! | AGATTGTTGTTAATTGTGTT+TGG | - | tig0023189:7319-7338 | Msa1406090:three_prime_UTR | 25.0% |
| !! | GATTGTTGTTAATTGTGTTT+GGG | - | tig0023189:7320-7339 | Msa1406090:three_prime_UTR | 25.0% |
| !!! | ACTTCTCCTTTTTCATTTTT+TGG | - | tig0023189:7541-7560 | Msa1406090:exon | 25.0% |
| !! | TGTTTTTCTCTTCTTGAAAT+GGG | + | tig0023189:7592-7611 | None:intergenic | 25.0% |
| !!! | TTGTTTTTCTCTTCTTGAAA+TGG | + | tig0023189:7593-7612 | None:intergenic | 25.0% |
| ! | CAAGAAGAGAAAAACAAAAA+TGG | - | tig0023189:7596-7615 | Msa1406090:CDS | 25.0% |
| ! | TTGAAGGATTAAAAAGAACA+TGG | - | tig0023189:8294-8313 | Msa1406090:intron | 25.0% |
| !! | ATTGTAAACAAAGCTTTGAT+GGG | - | tig0023189:8400-8419 | Msa1406090:CDS | 25.0% |
| ! | AAGAAAATCATACTTAAAGG+AGG | + | tig0023189:8545-8564 | None:intergenic | 25.0% |
| !!! | TTTGTTTCTTTTTTGACCAT+TGG | - | tig0023189:8819-8838 | Msa1406090:intron | 25.0% |
| !! | AAAATGAAGGGTATACTAAA+TGG | + | tig0023189:9204-9223 | None:intergenic | 25.0% |
| !! | ACGTGATTCAATTTTTAATG+CGG | + | tig0023189:9279-9298 | None:intergenic | 25.0% |
| ! | GGATTAAAAATTAGATGCTT+AGG | + | tig0023189:9609-9628 | None:intergenic | 25.0% |
| !! | AAGCATCTAATTTTTAATCC+AGG | - | tig0023189:9609-9628 | Msa1406090:intron | 25.0% |
| ! | ATGGCAGTTAAAATTCTAAA+TGG | + | tig0023189:9635-9654 | None:intergenic | 25.0% |
| ! | AGAAATCTATAGATGGAATT+GGG | - | tig0023189:9660-9679 | Msa1406090:intron | 25.0% |
| ! | TGATACTATCTTAGAATTTG+AGG | - | tig0023189:9822-9841 | Msa1406090:CDS | 25.0% |
| ! | GATACTATCTTAGAATTTGA+GGG | - | tig0023189:9823-9842 | Msa1406090:CDS | 25.0% |
| ! | AGTATGTTCATTATCTTCAA+CGG | - | tig0023189:10160-10179 | Msa1406090:intron | 25.0% |
| ! | AATTATCTACACATATTGGA+AGG | + | tig0023189:10489-10508 | None:intergenic | 25.0% |
| ! | ATGCAATTATCTACACATAT+TGG | + | tig0023189:10493-10512 | None:intergenic | 25.0% |
| ! | AATCTACTTATCAACATACA+TGG | - | tig0023189:10576-10595 | Msa1406090:intron | 25.0% |
| ! | GCATATAATGAGATTATGAA+CGG | + | tig0023189:10684-10703 | None:intergenic | 25.0% |
| ! | CATAATCTCATTATATGCTT+AGG | - | tig0023189:10686-10705 | Msa1406090:intron | 25.0% |
| ! | CATCATTGAAATGTCAAATT+CGG | + | tig0023189:10742-10761 | None:intergenic | 25.0% |
| ! | ACATTTCAATGATGATCAAA+TGG | - | tig0023189:10748-10767 | Msa1406090:intron | 25.0% |
| !!! | ATAATGGGATTCTTTTTCTT+TGG | - | tig0023189:10997-11016 | Msa1406090:intron | 25.0% |
| !! | TAATGGGATTCTTTTTCTTT+GGG | - | tig0023189:10998-11017 | Msa1406090:intron | 25.0% |
| ! | CTTAATCTTCATGTAGTTAT+AGG | - | tig0023189:11030-11049 | Msa1406090:intron | 25.0% |
| !! | GAAAAGATGAAAATTTTCCA+GGG | + | tig0023189:11371-11390 | None:intergenic | 25.0% |
| TGTGAATAGAAAAGAAAGGT+GGG | + | tig0023189:7444-7463 | None:intergenic | 30.0% | |
| TGATACACTCAATTTGGATT+TGG | + | tig0023189:7911-7930 | None:intergenic | 30.0% | |
| CTAAAGTGATACACTCAATT+TGG | + | tig0023189:7917-7936 | None:intergenic | 30.0% | |
| ATTGAGTGTATCACTTTAGA+TGG | - | tig0023189:7918-7937 | Msa1406090:intron | 30.0% | |
| GACAAATAAAAAGACTTGAC+TGG | + | tig0023189:8047-8066 | None:intergenic | 30.0% | |
| TTAATCCTTCAAACTTCACA+CGG | + | tig0023189:8286-8305 | None:intergenic | 30.0% | |
| ! | CATTGTAAACAAAGCTTTGA+TGG | - | tig0023189:8399-8418 | Msa1406090:CDS | 30.0% |
| !! | AATTTTAGAAGTTCGGACAA+TGG | + | tig0023189:8670-8689 | None:intergenic | 30.0% |
| TTTGCTAACTTCTCTATTGT+TGG | - | tig0023189:8697-8716 | Msa1406090:intron | 30.0% | |
| GAATGAATGTCAGTTTAATG+TGG | - | tig0023189:8719-8738 | Msa1406090:intron | 30.0% | |
| TGGATTCTATCAAGTAAGTT+CGG | - | tig0023189:8750-8769 | Msa1406090:intron | 30.0% | |
| ! | GAAACAAATTTAACTTCTGG+AGG | + | tig0023189:8807-8826 | None:intergenic | 30.0% |
| !! | AGCATAGGTATTGTTCTTTT+GGG | - | tig0023189:8929-8948 | Msa1406090:intron | 30.0% |
| ! | TGTTTCTTAGAATTTGGGTT+TGG | - | tig0023189:9090-9109 | Msa1406090:intron | 30.0% |
| ! | GTTTCTTAGAATTTGGGTTT+GGG | - | tig0023189:9091-9110 | Msa1406090:intron | 30.0% |
| ! | TTTCTTAGAATTTGGGTTTG+GGG | - | tig0023189:9092-9111 | Msa1406090:intron | 30.0% |
| ! | CGTGATTCAATTTTTAATGC+GGG | + | tig0023189:9278-9297 | None:intergenic | 30.0% |
| TGTGTAGACAAGAAAAAACA+AGG | - | tig0023189:9399-9418 | Msa1406090:intron | 30.0% | |
| AGTTAAAATTCTAAATGGCC+TGG | + | tig0023189:9630-9649 | None:intergenic | 30.0% | |
| ATCTATAGATTTCTGACACA+TGG | + | tig0023189:9654-9673 | None:intergenic | 30.0% | |
| ATGTGTCAGAAATCTATAGA+TGG | - | tig0023189:9653-9672 | Msa1406090:intron | 30.0% | |
| CAGAAATCTATAGATGGAAT+TGG | - | tig0023189:9659-9678 | Msa1406090:intron | 30.0% | |
| ! | AAGAATGGACATTTGAAATG+TGG | - | tig0023189:9752-9771 | Msa1406090:CDS | 30.0% |
| ! | AGAATGGACATTTGAAATGT+GGG | - | tig0023189:9753-9772 | Msa1406090:CDS | 30.0% |
| TATCTTAGAATTTGAGGGTA+GGG | - | tig0023189:9828-9847 | Msa1406090:CDS | 30.0% | |
| ACTAACTTAATCCCACAAAT+CGG | - | tig0023189:9852-9871 | Msa1406090:CDS | 30.0% | |
| ACCTAAGTCATATCTTTGTT+CGG | - | tig0023189:9916-9935 | Msa1406090:intron | 30.0% | |
| ATCAGAAACGAATACTAATG+CGG | - | tig0023189:9980-9999 | Msa1406090:CDS | 30.0% | |
| ! | CTATGAACACTCCTTTTAAT+TGG | - | tig0023189:10057-10076 | Msa1406090:CDS | 30.0% |
| !! | CACTCCTTTTAATTGGTATA+TGG | - | tig0023189:10064-10083 | Msa1406090:CDS | 30.0% |
| GACACCATATACCAATTAAA+AGG | + | tig0023189:10071-10090 | None:intergenic | 30.0% | |
| TCCGTAGCATTCAATATTAA+TGG | - | tig0023189:10116-10135 | Msa1406090:CDS | 30.0% | |
| CCCATTAATATTGAATGCTA+CGG | + | tig0023189:10120-10139 | None:intergenic | 30.0% | |
| CCGTAGCATTCAATATTAAT+GGG | - | tig0023189:10117-10136 | Msa1406090:CDS | 30.0% | |
| ! | ACTAAGTTCTTTCAACCTTT+TGG | - | tig0023189:10191-10210 | Msa1406090:intron | 30.0% |
| ! | CTAAGTTCTTTCAACCTTTT+GGG | - | tig0023189:10192-10211 | Msa1406090:intron | 30.0% |
| TTATACTAAGCTTCTGTGTT+TGG | - | tig0023189:10842-10861 | Msa1406090:intron | 30.0% | |
| ACAGTATTCACTCATTATGA+TGG | - | tig0023189:11172-11191 | Msa1406090:intron | 30.0% | |
| ! | GGAAAAGATGAAAATTTTCC+AGG | + | tig0023189:11372-11391 | None:intergenic | 30.0% |
| ! | AAGAATGATCTGAGGTTGAA+AGG | + | tig0023189:7411-7430 | None:intergenic | 35.0% |
| GTGAATAGAAAAGAAAGGTG+GGG | + | tig0023189:7443-7462 | None:intergenic | 35.0% | |
| GTGTGAATAGAAAAGAAAGG+TGG | + | tig0023189:7445-7464 | None:intergenic | 35.0% | |
| GAGGTGTGAATAGAAAAGAA+AGG | + | tig0023189:7448-7467 | None:intergenic | 35.0% | |
| GATGTGATAGATTGAGAATG+TGG | + | tig0023189:7510-7529 | None:intergenic | 35.0% | |
| !!! | TTTTTTGAATGCCACCCTTA+TGG | - | tig0023189:7671-7690 | Msa1406090:CDS | 35.0% |
| ATGCATACAGATCCAAGAAA+GGG | + | tig0023189:7706-7725 | None:intergenic | 35.0% | |
| AATGCATACAGATCCAAGAA+AGG | + | tig0023189:7707-7726 | None:intergenic | 35.0% | |
| TTTCTTGGATCTGTATGCAT+TGG | - | tig0023189:7706-7725 | Msa1406090:CDS | 35.0% | |
| TACACTCAATTTGGATTTGG+TGG | + | tig0023189:7908-7927 | None:intergenic | 35.0% | |
| CGATAGTGTGAATTCAAAAG+TGG | + | tig0023189:8019-8038 | None:intergenic | 35.0% | |
| TTTACACAAACAAAGAAGCC+TGG | + | tig0023189:8201-8220 | None:intergenic | 35.0% | |
| ACTCCTGCATTATTTGAAAG+TGG | - | tig0023189:8228-8247 | Msa1406090:intron | 35.0% | |
| CTGCATTATTTGAAAGTGGA+GGG | - | tig0023189:8232-8251 | Msa1406090:intron | 35.0% | |
| TTCAATGTTGTCACATCTGT+TGG | - | tig0023189:8370-8389 | Msa1406090:intron | 35.0% | |
| AGTTTAATGTGGAACTCAGT+TGG | - | tig0023189:8730-8749 | Msa1406090:intron | 35.0% | |
| !! | GGCTGACTTTTTCTCTATTT+TGG | - | tig0023189:8771-8790 | Msa1406090:intron | 35.0% |
| TACAGGGATCATACTCAATT+TGG | + | tig0023189:8852-8871 | None:intergenic | 35.0% | |
| !! | GAGCATAGGTATTGTTCTTT+TGG | - | tig0023189:8928-8947 | Msa1406090:intron | 35.0% |
| GACGTAAGTGTAAACATGAA+AGG | - | tig0023189:8974-8993 | Msa1406090:intron | 35.0% | |
| !! | CACCTCAAAATTGACTTGTA+AGG | - | tig0023189:9125-9144 | Msa1406090:intron | 35.0% |
| ! | CACCTTACAAGTCAATTTTG+AGG | + | tig0023189:9130-9149 | None:intergenic | 35.0% |
| GAAGGAATTGGGAAAATGAA+GGG | + | tig0023189:9216-9235 | None:intergenic | 35.0% | |
| GGAAATCTATGGAAGGAATT+GGG | + | tig0023189:9227-9246 | None:intergenic | 35.0% | |
| GAAATTTAACTGCCATGTGT+CGG | + | tig0023189:9248-9267 | None:intergenic | 35.0% | |
| !! | CTCTTCTCCTTGCTTTTATA+TGG | - | tig0023189:9342-9361 | Msa1406090:intron | 35.0% |
| AAGCATCTAATGTATCTGTG+CGG | - | tig0023189:9561-9580 | Msa1406090:intron | 35.0% | |
| AGATGGAATTGGGTAAATAG+AGG | - | tig0023189:9670-9689 | Msa1406090:intron | 35.0% | |
| AAGTTGAACTCATACTACCT+AGG | - | tig0023189:9710-9729 | Msa1406090:CDS | 35.0% | |
| CTATCTTAGAATTTGAGGGT+AGG | - | tig0023189:9827-9846 | Msa1406090:CDS | 35.0% | |
| ATCTTAGAATTTGAGGGTAG+GGG | - | tig0023189:9829-9848 | Msa1406090:CDS | 35.0% | |
| ! | ACTGTCCAAACCTTATTTGT+AGG | - | tig0023189:9889-9908 | Msa1406090:intron | 35.0% |
| TAGTGCCTACAAATAAGGTT+TGG | + | tig0023189:9897-9916 | None:intergenic | 35.0% | |
| TTAGGTAGTGCCTACAAATA+AGG | + | tig0023189:9902-9921 | None:intergenic | 35.0% | |
| ACCGAACAAAGATATGACTT+AGG | + | tig0023189:9920-9939 | None:intergenic | 35.0% | |
| TCAGAAACGAATACTAATGC+GGG | - | tig0023189:9981-10000 | Msa1406090:CDS | 35.0% | |
| !! | TTAAAAGGAGTGTTCATAGC+AGG | + | tig0023189:10056-10075 | None:intergenic | 35.0% |
| ! | GCTGGATCACTATTGTTATT+GGG | - | tig0023189:10234-10253 | Msa1406090:intron | 35.0% |
| TCAACCAATAGTCTAGAAGA+GGG | + | tig0023189:10260-10279 | None:intergenic | 35.0% | |
| ACATCCATGTGAATCTACAA+AGG | + | tig0023189:10415-10434 | None:intergenic | 35.0% | |
| TTTGTAGATTCACATGGATG+TGG | - | tig0023189:10414-10433 | Msa1406090:five_prime_UTR | 35.0% | |
| CATGGATGTGGATATTATAC+TGG | - | tig0023189:10426-10445 | Msa1406090:five_prime_UTR | 35.0% | |
| ATCTGCCAATGCAGATAAAT+TGG | + | tig0023189:10924-10943 | None:intergenic | 35.0% | |
| TCTTCATATGTCCAAGTACT+TGG | + | tig0023189:10963-10982 | None:intergenic | 35.0% | |
| ACTAGCTGATATCTCCTTAT+AGG | - | tig0023189:11339-11358 | Msa1406090:five_prime_UTR | 35.0% | |
| TTGCTTATTTGCTTTGCAGC+AGG | + | tig0023189:7364-7383 | None:intergenic | 40.0% | |
| TGAGGTTGAAAGGAGTTGTA+TGG | + | tig0023189:7401-7420 | None:intergenic | 40.0% | |
| TGCATACAGATCCAAGAAAG+GGG | + | tig0023189:7705-7724 | None:intergenic | 40.0% | |
| ! | TTATGACCTTCCATTTTGCC+AGG | - | tig0023189:8180-8199 | Msa1406090:intron | 40.0% |
| AACAAAGAAGCCTGGCAAAA+TGG | + | tig0023189:8193-8212 | None:intergenic | 40.0% | |
| CCTCCACTTTCAAATAATGC+AGG | + | tig0023189:8234-8253 | None:intergenic | 40.0% | |
| CCTGCATTATTTGAAAGTGG+AGG | - | tig0023189:8231-8250 | Msa1406090:intron | 40.0% | |
| TGAAAGTGGAGGGAATGTTA+TGG | - | tig0023189:8242-8261 | Msa1406090:intron | 40.0% | |
| TTCTTCTCAGCTTTGCTTGA+AGG | + | tig0023189:8322-8341 | None:intergenic | 40.0% | |
| TTCAAGCAAAGCTGAGAAGA+AGG | - | tig0023189:8321-8340 | Msa1406090:intron | 40.0% | |
| ! | GTAAACAAAGCTTTGATGGG+TGG | - | tig0023189:8403-8422 | Msa1406090:CDS | 40.0% |
| ! | AAAGCTTTGATGGGTGGTTA+TGG | - | tig0023189:8409-8428 | Msa1406090:CDS | 40.0% |
| !! | TTAACTTCTGGAGGCACTAA+TGG | + | tig0023189:8798-8817 | None:intergenic | 40.0% |
| TCAATTTGGCAATCTGCCAA+TGG | + | tig0023189:8838-8857 | None:intergenic | 40.0% | |
| CAAACAAACTTCCAACAAGC+AGG | + | tig0023189:8876-8895 | None:intergenic | 40.0% | |
| ! | CTGCTTGTTGGAAGTTTGTT+TGG | - | tig0023189:8874-8893 | Msa1406090:intron | 40.0% |
| AGAGACACAAAACTGAGCAT+AGG | - | tig0023189:8914-8933 | Msa1406090:intron | 40.0% | |
| !! | GGTATTGTTCTTTTGGGAGT+TGG | - | tig0023189:8935-8954 | Msa1406090:intron | 40.0% |
| TGTACTCCACACTGCTATAA+AGG | + | tig0023189:9011-9030 | None:intergenic | 40.0% | |
| GCTCAAACCTTGTAAGAACT+TGG | - | tig0023189:9155-9174 | Msa1406090:intron | 40.0% | |
| GGTAGTACCAAGTTCTTACA+AGG | + | tig0023189:9165-9184 | None:intergenic | 40.0% | |
| AATGGAGCAAAGTTGAACTC+AGG | + | tig0023189:9186-9205 | None:intergenic | 40.0% | |
| GGAAGGAATTGGGAAAATGA+AGG | + | tig0023189:9217-9236 | None:intergenic | 40.0% | |
| CGGAAATCTATGGAAGGAAT+TGG | + | tig0023189:9228-9247 | None:intergenic | 40.0% | |
| ATGTGTCGGAAATCTATGGA+AGG | + | tig0023189:9234-9253 | None:intergenic | 40.0% | |
| TTCCATAGATTTCCGACACA+TGG | - | tig0023189:9233-9252 | Msa1406090:intron | 40.0% | |
| GATAGAATCGAACTCTGTTC+AGG | + | tig0023189:9320-9339 | None:intergenic | 40.0% | |
| TTATCGGGTAAACATCTGTG+CGG | - | tig0023189:9525-9544 | Msa1406090:intron | 40.0% | |
| AGCATCTAATGTATCTGTGC+GGG | - | tig0023189:9562-9581 | Msa1406090:intron | 40.0% | |
| ATCTCTCTCACGCTTAAGAA+TGG | - | tig0023189:9737-9756 | Msa1406090:CDS | 40.0% | |
| ! | ATGGACATTTGAAATGTGGG+TGG | - | tig0023189:9756-9775 | Msa1406090:CDS | 40.0% |
| !! | CATCTTACTAGCCGATTTGT+GGG | + | tig0023189:9866-9885 | None:intergenic | 40.0% |
| !! | TCATCTTACTAGCCGATTTG+TGG | + | tig0023189:9867-9886 | None:intergenic | 40.0% |
| ! | AGTCATATCTTTGTTCGGTG+TGG | - | tig0023189:9921-9940 | Msa1406090:intron | 40.0% |
| !! | GTCATATCTTTGTTCGGTGT+GGG | - | tig0023189:9922-9941 | Msa1406090:intron | 40.0% |
| TTCTACTCTTGAGTGTGAGA+GGG | + | tig0023189:9960-9979 | None:intergenic | 40.0% | |
| TTTCTACTCTTGAGTGTGAG+AGG | + | tig0023189:9961-9980 | None:intergenic | 40.0% | |
| GGCTGGATCACTATTGTTAT+TGG | - | tig0023189:10233-10252 | Msa1406090:intron | 40.0% | |
| GTCAACCAATAGTCTAGAAG+AGG | + | tig0023189:10261-10280 | None:intergenic | 40.0% | |
| TACGCCTTTGTAGATTCACA+TGG | - | tig0023189:10408-10427 | Msa1406090:exon | 40.0% | |
| ! | TAAGCTTCTGTGTTTGGCTT+TGG | - | tig0023189:10848-10867 | Msa1406090:intron | 40.0% |
| TGTCATGCACTATTGCAGTT+GGG | - | tig0023189:10887-10906 | Msa1406090:intron | 40.0% | |
| CAATGCAGATAAATTGGCTG+AGG | + | tig0023189:10918-10937 | None:intergenic | 40.0% | |
| CTCAGCCAATTTATCTGCAT+TGG | - | tig0023189:10916-10935 | Msa1406090:intron | 40.0% | |
| GCTGTATCTTTCCAAGTACT+TGG | - | tig0023189:10949-10968 | Msa1406090:intron | 40.0% | |
| ! | TGGGATTCTTTTTCTTTGGG+AGG | - | tig0023189:11001-11020 | Msa1406090:intron | 40.0% |
| !! | GGGATTCTTTTTCTTTGGGA+GGG | - | tig0023189:11002-11021 | Msa1406090:intron | 40.0% |
| !! | TTCTTTTTCTTTGGGAGGGA+AGG | - | tig0023189:11006-11025 | Msa1406090:intron | 40.0% |
| GGGATGATAATAGCTGTTGT+TGG | - | tig0023189:11051-11070 | Msa1406090:intron | 40.0% | |
| TAGCTGTTGTTGGAATGATG+TGG | - | tig0023189:11061-11080 | Msa1406090:intron | 40.0% | |
| GTTGTTGGAATGATGTGGTA+TGG | - | tig0023189:11066-11085 | Msa1406090:intron | 40.0% | |
| ! | GACTTTCTGTTTTGCTGGTA+GGG | + | tig0023189:11140-11159 | None:intergenic | 40.0% |
| CTACCAGCAAAACAGAAAGT+CGG | - | tig0023189:11139-11158 | Msa1406090:intron | 40.0% | |
| TTGCAAAAGTTGAGTACAGC+AGG | - | tig0023189:11208-11227 | Msa1406090:intron | 40.0% | |
| ! | ACAGCAGGATAGTTGATTCT+AGG | - | tig0023189:11223-11242 | Msa1406090:intron | 40.0% |
| TATTTGCTTTGCAGCAGGAG+TGG | + | tig0023189:7359-7378 | None:intergenic | 45.0% | |
| GTGTTGGGAAGAATGATCTG+AGG | + | tig0023189:7419-7438 | None:intergenic | 45.0% | |
| AAAGAAAGGTGGGGTGTGTT+GGG | + | tig0023189:7434-7453 | None:intergenic | 45.0% | |
| AAAAGAAAGGTGGGGTGTGT+TGG | + | tig0023189:7435-7454 | None:intergenic | 45.0% | |
| TCTATTCACACCTCCATCCA+CGG | - | tig0023189:7454-7473 | Msa1406090:three_prime_UTR | 45.0% | |
| AAAAGGAAGCTAACCGTGGA+TGG | + | tig0023189:7470-7489 | None:intergenic | 45.0% | |
| AGAGAAAAGGAAGCTAACCG+TGG | + | tig0023189:7474-7493 | None:intergenic | 45.0% | |
| AAGGGGTCTCAGATCCATAA+GGG | + | tig0023189:7688-7707 | None:intergenic | 45.0% | |
| AAAGGGGTCTCAGATCCATA+AGG | + | tig0023189:7689-7708 | None:intergenic | 45.0% | |
| AAGAAGCCTGGCAAAATGGA+AGG | + | tig0023189:8189-8208 | None:intergenic | 45.0% | |
| AAGTGGAGGGAATGTTATGG+AGG | - | tig0023189:8245-8264 | Msa1406090:intron | 45.0% | |
| GAGATCCGTGTGAAGTTTGA+AGG | - | tig0023189:8278-8297 | Msa1406090:intron | 45.0% | |
| ! | GGTGGTTATGGCTTCAGTTT+TGG | - | tig0023189:8421-8440 | Msa1406090:CDS | 45.0% |
| CTATCATGACGCTCGTACTA+CGG | - | tig0023189:8614-8633 | Msa1406090:intron | 45.0% | |
| TATCATGACGCTCGTACTAC+GGG | - | tig0023189:8615-8634 | Msa1406090:intron | 45.0% | |
| ACAATGGAAGATGAGATGGC+TGG | + | tig0023189:8654-8673 | None:intergenic | 45.0% | |
| TCGGACAATGGAAGATGAGA+TGG | + | tig0023189:8658-8677 | None:intergenic | 45.0% | |
| CTTCCAACAAGCAGGATACA+GGG | + | tig0023189:8868-8887 | None:intergenic | 45.0% | |
| ACTTCCAACAAGCAGGATAC+AGG | + | tig0023189:8869-8888 | None:intergenic | 45.0% | |
| TTGCTGCCTTTATAGCAGTG+TGG | - | tig0023189:9002-9021 | Msa1406090:intron | 45.0% | |
| TGCCATGTGTCGGAAATCTA+TGG | + | tig0023189:9238-9257 | None:intergenic | 45.0% | |
| GCGACGTCCATATAAAAGCA+AGG | + | tig0023189:9352-9371 | None:intergenic | 45.0% | |
| GCATCTAATGTATCTGTGCG+GGG | - | tig0023189:9563-9582 | Msa1406090:intron | 45.0% | |
| CATCTAATGTATCTGTGCGG+GGG | - | tig0023189:9564-9583 | Msa1406090:intron | 45.0% | |
| GAAACGAATACTAATGCGGG+TGG | - | tig0023189:9984-10003 | Msa1406090:CDS | 45.0% | |
| TTATCCAGAACTTACCGAGG+AGG | + | tig0023189:10319-10338 | None:intergenic | 45.0% | |
| CTGTTATCCAGAACTTACCG+AGG | + | tig0023189:10322-10341 | None:intergenic | 45.0% | |
| CAACTGCAATAGTGCATGAC+AGG | + | tig0023189:10888-10907 | None:intergenic | 45.0% | |
| CTGTCATGCACTATTGCAGT+TGG | - | tig0023189:10886-10905 | Msa1406090:intron | 45.0% | |
| GCAGATAAATTGGCTGAGGT+TGG | + | tig0023189:10914-10933 | None:intergenic | 45.0% | |
| ! | TGGTAATGCCTCATCAAAGC+CGG | - | tig0023189:11086-11105 | Msa1406090:intron | 45.0% |
| ! | CGACTTTCTGTTTTGCTGGT+AGG | + | tig0023189:11141-11160 | None:intergenic | 45.0% |
| !!! | TCACCGACTTTCTGTTTTGC+TGG | + | tig0023189:11145-11164 | None:intergenic | 45.0% |
| ! | TTCCAGGGAGCATACCTATA+AGG | + | tig0023189:11356-11375 | None:intergenic | 45.0% |
| ! | TGGATCTGAGACCCCTTTCT+TGG | - | tig0023189:7691-7710 | Msa1406090:CDS | 50.0% |
| GCCTGCAGCTACAACGTTAA+CGG | - | tig0023189:8570-8589 | Msa1406090:intron | 50.0% | |
| CCTGCAGCTACAACGTTAAC+GGG | - | tig0023189:8571-8590 | Msa1406090:intron | 50.0% | |
| GATCCCTGTATCCTGCTTGT+TGG | - | tig0023189:8862-8881 | Msa1406090:intron | 50.0% | |
| TCTACACAGCATTGCAGCAG+TGG | + | tig0023189:9387-9406 | None:intergenic | 50.0% | |
| GCGTGAGAGAGATATGACCT+AGG | + | tig0023189:9730-9749 | None:intergenic | 50.0% | |
| AATAGTGATCCAGCCTGTGC+GGG | + | tig0023189:10228-10247 | None:intergenic | 50.0% | |
| CAATAGTGATCCAGCCTGTG+CGG | + | tig0023189:10229-10248 | None:intergenic | 50.0% | |
| TGGGCCCTCTTCTAGACTAT+TGG | - | tig0023189:10253-10272 | Msa1406090:intron | 50.0% | |
| TTCTTACGATGCAGCCTCCT+CGG | - | tig0023189:10302-10321 | Msa1406090:CDS | 50.0% | |
| GGTAATGCCTCATCAAAGCC+GGG | - | tig0023189:11087-11106 | Msa1406090:intron | 50.0% | |
| CTCCTTATAGGTATGCTCCC+TGG | - | tig0023189:11351-11370 | Msa1406090:five_prime_UTR | 50.0% | |
| AGGAAGCTAACCGTGGATGG+AGG | + | tig0023189:7467-7486 | None:intergenic | 55.0% | |
| GGGTCTCAGATCCATAAGGG+TGG | + | tig0023189:7685-7704 | None:intergenic | 55.0% | |
| CATCCATGCCGCAGCATCTA+CGG | + | tig0023189:8350-8369 | None:intergenic | 55.0% | |
| CCCGTTAACGTTGTAGCTGC+AGG | + | tig0023189:8574-8593 | None:intergenic | 55.0% | |
| ! | CGGGTGCTGTATGTCCCAAA+AGG | + | tig0023189:10209-10228 | None:intergenic | 55.0% |
| AATGCCTCATCAAAGCCGGG+TGG | - | tig0023189:11090-11109 | Msa1406090:intron | 55.0% | |
| ! | CTTTCCACCCGGCTTTGATG+AGG | + | tig0023189:11097-11116 | None:intergenic | 55.0% |
| CTCATCAAAGCCGGGTGGAA+AGG | - | tig0023189:11095-11114 | Msa1406090:intron | 55.0% | |
| CTCCAACGTTCCTTTCCACC+CGG | + | tig0023189:11108-11127 | None:intergenic | 55.0% | |
| GAAGGCAGCCGTAGATGCTG+CGG | - | tig0023189:8339-8358 | Msa1406090:intron | 60.0% | |
| ACGCTCGTACTACGGGTGCT+GGG | - | tig0023189:8622-8641 | Msa1406090:intron | 60.0% | |
| GCAGCCTCCTCGGTAAGTTC+TGG | - | tig0023189:10312-10331 | Msa1406090:CDS | 60.0% | |
| AGCCGGGTGGAAAGGAACGT+TGG | - | tig0023189:11103-11122 | Msa1406090:intron | 60.0% | |
| CAGCCGTAGATGCTGCGGCA+TGG | - | tig0023189:8344-8363 | Msa1406090:intron | 65.0% | |
| GACGCTCGTACTACGGGTGC+TGG | - | tig0023189:8621-8640 | Msa1406090:intron | 65.0% | |
| GGGACATACAGCACCCGCAC+AGG | - | tig0023189:10212-10231 | Msa1406090:intron | 65.0% | |
| CATACAGCACCCGCACAGGC+TGG | - | tig0023189:10216-10235 | Msa1406090:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023189 | gene | 7272 | 11450 | 7272 | ID=Msa1406090;Name=Msa1406090 |
| tig0023189 | mRNA | 7272 | 11450 | 7272 | ID=Msa1406090-mRNA-1;Parent=Msa1406090;Name=Msa1406090-mRNA-1;_AED=0.11;_eAED=0.11;_QI=315|1|1|1|0.8|0.66|6|286|322 |
| tig0023189 | exon | 7272 | 7848 | 7272 | ID=Msa1406090-mRNA-1:exon:24420;Parent=Msa1406090-mRNA-1 |
| tig0023189 | exon | 8399 | 8560 | 8399 | ID=Msa1406090-mRNA-1:exon:24419;Parent=Msa1406090-mRNA-1 |
| tig0023189 | exon | 9677 | 9877 | 9677 | ID=Msa1406090-mRNA-1:exon:24418;Parent=Msa1406090-mRNA-1 |
| tig0023189 | exon | 9960 | 10144 | 9960 | ID=Msa1406090-mRNA-1:exon:24417;Parent=Msa1406090-mRNA-1 |
| tig0023189 | exon | 10280 | 10520 | 10280 | ID=Msa1406090-mRNA-1:exon:24416;Parent=Msa1406090-mRNA-1 |
| tig0023189 | exon | 11247 | 11450 | 11247 | ID=Msa1406090-mRNA-1:exon:24415;Parent=Msa1406090-mRNA-1 |
| tig0023189 | five_prime_UTR | 11247 | 11450 | 11247 | ID=Msa1406090-mRNA-1:five_prime_utr;Parent=Msa1406090-mRNA-1 |
| tig0023189 | five_prime_UTR | 10410 | 10520 | 10410 | ID=Msa1406090-mRNA-1:five_prime_utr;Parent=Msa1406090-mRNA-1 |
| tig0023189 | CDS | 10280 | 10409 | 10280 | ID=Msa1406090-mRNA-1:cds;Parent=Msa1406090-mRNA-1 |
| tig0023189 | CDS | 9960 | 10144 | 9960 | ID=Msa1406090-mRNA-1:cds;Parent=Msa1406090-mRNA-1 |
| tig0023189 | CDS | 9677 | 9877 | 9677 | ID=Msa1406090-mRNA-1:cds;Parent=Msa1406090-mRNA-1 |
| tig0023189 | CDS | 8399 | 8560 | 8399 | ID=Msa1406090-mRNA-1:cds;Parent=Msa1406090-mRNA-1 |
| tig0023189 | CDS | 7558 | 7848 | 7558 | ID=Msa1406090-mRNA-1:cds;Parent=Msa1406090-mRNA-1 |
| tig0023189 | three_prime_UTR | 7272 | 7557 | 7272 | ID=Msa1406090-mRNA-1:three_prime_utr;Parent=Msa1406090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
