Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837870 | XP_003612115.1 | 95.628 | 709 | 29 | 1 | 1 | 709 | 1 | 707 | 0.0 | 1363 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837870 | sp|Q9SD34|C3H44_ARATH | 51.948 | 231 | 95 | 6 | 10 | 229 | 44 | 269 | 2.79e-67 | 244 |
| Msa0837870 | sp|Q9SD34|C3H44_ARATH | 47.436 | 78 | 38 | 1 | 324 | 398 | 703 | 780 | 2.84e-13 | 77.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837870 | G7KGD1 | 95.628 | 709 | 29 | 1 | 1 | 709 | 1 | 707 | 0.0 | 1363 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015670 | Msa0837870 | 0.811728 | 6.056357e-51 | -8.615850e-47 |
| Msa0045550 | Msa0837870 | 0.810176 | 1.312925e-50 | -8.615850e-47 |
| Msa0045910 | Msa0837870 | 0.803091 | 4.112156e-49 | -8.615850e-47 |
| Msa0051050 | Msa0837870 | 0.835599 | 1.527549e-56 | -8.615850e-47 |
| Msa0092410 | Msa0837870 | 0.801657 | 8.119870e-49 | -8.615850e-47 |
| Msa0101240 | Msa0837870 | 0.841637 | 4.211838e-58 | -8.615850e-47 |
| Msa0614380 | Msa0837870 | 0.811529 | 6.690828e-51 | -8.615850e-47 |
| Msa0696850 | Msa0837870 | 0.801826 | 7.497435e-49 | -8.615850e-47 |
| Msa0714990 | Msa0837870 | 0.810629 | 1.048022e-50 | -8.615850e-47 |
| Msa0743870 | Msa0837870 | 0.813528 | 2.445182e-51 | -8.615850e-47 |
| Msa0754770 | Msa0837870 | 0.816497 | 5.363985e-52 | -8.615850e-47 |
| Msa0757020 | Msa0837870 | 0.807636 | 4.589367e-50 | -8.615850e-47 |
| Msa0758250 | Msa0837870 | 0.895484 | 9.174240e-76 | -8.615850e-47 |
| Msa0789560 | Msa0837870 | 0.805972 | 1.031179e-49 | -8.615850e-47 |
| Msa0794210 | Msa0837870 | 0.809379 | 1.948209e-50 | -8.615850e-47 |
| Msa0796630 | Msa0837870 | 0.826949 | 2.048160e-54 | -8.615850e-47 |
| Msa0798010 | Msa0837870 | 0.813306 | 2.736814e-51 | -8.615850e-47 |
| Msa0799620 | Msa0837870 | 0.854049 | 1.594106e-61 | -8.615850e-47 |
| Msa0834180 | Msa0837870 | 0.801578 | 8.429888e-49 | -8.615850e-47 |
| Msa0836650 | Msa0837870 | 0.804623 | 1.976570e-49 | -8.615850e-47 |
| Msa0837870 | Msa0865970 | 0.842632 | 2.296631e-58 | -8.615850e-47 |
| Msa0837870 | Msa0866070 | 0.854077 | 1.565045e-61 | -8.615850e-47 |
| Msa0837870 | Msa1034700 | 0.840764 | 7.142315e-58 | -8.615850e-47 |
| Msa0837870 | Msa1043120 | 0.830563 | 2.737156e-55 | -8.615850e-47 |
| Msa0837870 | Msa1051910 | 0.805005 | 1.645111e-49 | -8.615850e-47 |
| Msa0837870 | Msa1074350 | 0.814900 | 1.217187e-51 | -8.615850e-47 |
| Msa0837870 | Msa1098270 | 0.805221 | 1.482417e-49 | -8.615850e-47 |
| Msa0837870 | Msa1114620 | 0.809187 | 2.142085e-50 | -8.615850e-47 |
| Msa0837870 | Msa1162060 | 0.827866 | 1.234573e-54 | -8.615850e-47 |
| Msa0837870 | Msa1177560 | 0.809012 | 2.334571e-50 | -8.615850e-47 |
| Msa0837870 | Msa1214170 | 0.807879 | 4.074713e-50 | -8.615850e-47 |
| Msa0837870 | Msa1215070 | 0.802463 | 5.543858e-49 | -8.615850e-47 |
| Msa0837870 | Msa1225200 | 0.810277 | 1.248860e-50 | -8.615850e-47 |
| Msa0837870 | Msa1234910 | 0.808107 | 3.644063e-50 | -8.615850e-47 |
| Msa0837870 | Msa1236440 | 0.818284 | 2.123739e-52 | -8.615850e-47 |
| Msa0837870 | Msa1260680 | 0.819015 | 1.449950e-52 | -8.615850e-47 |
| Msa0837870 | Msa1277670 | 0.801932 | 7.131539e-49 | -8.615850e-47 |
| Msa0837870 | Msa1332050 | 0.810055 | 1.393923e-50 | -8.615850e-47 |
| Msa0837870 | Msa1353250 | 0.836399 | 9.573572e-57 | -8.615850e-47 |
| Msa0837870 | Msa1359920 | 0.812404 | 4.312890e-51 | -8.615850e-47 |
| Msa0837870 | Msa1360020 | 0.800405 | 1.463658e-48 | -8.615850e-47 |
| Msa0837870 | Msa1360420 | 0.853903 | 1.756390e-61 | -8.615850e-47 |
| Msa0837870 | Msa1365350 | 0.820584 | 6.349461e-53 | -8.615850e-47 |
| Msa0837870 | Msa1366550 | 0.812311 | 4.519828e-51 | -8.615850e-47 |
| Msa0837870 | Msa1376370 | 0.827466 | 1.540666e-54 | -8.615850e-47 |
| Msa0837870 | Msa1388090 | 0.804525 | 2.072072e-49 | -8.615850e-47 |
| Msa0837870 | Msa1399260 | 0.840072 | 1.083852e-57 | -8.615850e-47 |
| Msa0837870 | Msa1400930 | 0.807406 | 5.133305e-50 | -8.615850e-47 |
| Msa0837870 | Msa1424630 | 0.818550 | 1.848798e-52 | -8.615850e-47 |
| Msa0837870 | Msa1430550 | 0.815467 | 9.108739e-52 | -8.615850e-47 |
| Msa0837870 | Msa1463030 | 0.826014 | 3.423023e-54 | -8.615850e-47 |
| Msa0837870 | Msa1465210 | 0.806995 | 6.274493e-50 | -8.615850e-47 |
| Msa0136630 | Msa0837870 | 0.807875 | 4.082848e-50 | -8.615850e-47 |
| Msa0187830 | Msa0837870 | 0.825998 | 3.451447e-54 | -8.615850e-47 |
| Msa0194010 | Msa0837870 | 0.807652 | 4.552770e-50 | -8.615850e-47 |
| Msa0235880 | Msa0837870 | 0.822229 | 2.648935e-53 | -8.615850e-47 |
| Msa0374350 | Msa0837870 | 0.826670 | 2.388624e-54 | -8.615850e-47 |
| Msa0374430 | Msa0837870 | 0.826360 | 2.831468e-54 | -8.615850e-47 |
| Msa0380600 | Msa0837870 | 0.803921 | 2.767947e-49 | -8.615850e-47 |
| Msa0403490 | Msa0837870 | 0.804292 | 2.317196e-49 | -8.615850e-47 |
| Msa0408340 | Msa0837870 | 0.836219 | 1.063902e-56 | -8.615850e-47 |
| Msa0429090 | Msa0837870 | 0.811817 | 5.790970e-51 | -8.615850e-47 |
| Msa0430240 | Msa0837870 | 0.805699 | 1.176704e-49 | -8.615850e-47 |
| Msa0475500 | Msa0837870 | 0.817089 | 3.950912e-52 | -8.615850e-47 |
| Msa0240270 | Msa0837870 | 0.803694 | 3.085227e-49 | -8.615850e-47 |
| Msa0240650 | Msa0837870 | 0.826383 | 2.796482e-54 | -8.615850e-47 |
| Msa0243320 | Msa0837870 | 0.814506 | 1.488237e-51 | -8.615850e-47 |
| Msa0269560 | Msa0837870 | 0.809026 | 2.318845e-50 | -8.615850e-47 |
| Msa0339280 | Msa0837870 | 0.812486 | 4.138861e-51 | -8.615850e-47 |
| Msa0572850 | Msa0837870 | 0.808613 | 2.841909e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837870 | MtrunA17_Chr5g0405031 | 95.628 | 709 | 29 | 1 | 1 | 709 | 1 | 707 | 0.0 | 1363 |
| Msa0837870 | MtrunA17_Chr5g0405071 | 65.665 | 233 | 72 | 5 | 33 | 262 | 60 | 287 | 3.14e-96 | 310 |
| Msa0837870 | MtrunA17_Chr5g0405061 | 40.936 | 513 | 201 | 11 | 242 | 696 | 15 | 483 | 5.94e-86 | 283 |
| Msa0837870 | MtrunA17_Chr3g0145201 | 55.941 | 202 | 76 | 3 | 46 | 246 | 214 | 403 | 4.02e-68 | 241 |
| Msa0837870 | MtrunA17_Chr3g0109671 | 38.462 | 130 | 77 | 2 | 65 | 192 | 9 | 137 | 1.09e-24 | 100 |
| Msa0837870 | MtrunA17_Chr7g0274551 | 48.515 | 101 | 51 | 1 | 70 | 170 | 25 | 124 | 1.53e-24 | 100 |
| Msa0837870 | MtrunA17_Chr3g0109641 | 36.184 | 152 | 90 | 3 | 71 | 218 | 15 | 163 | 8.70e-23 | 103 |
| Msa0837870 | MtrunA17_Chr3g0145231 | 60.000 | 60 | 23 | 1 | 116 | 175 | 4 | 62 | 9.61e-23 | 92.8 |
| Msa0837870 | MtrunA17_Chr3g0109631 | 35.526 | 152 | 91 | 3 | 71 | 218 | 15 | 163 | 1.30e-22 | 102 |
| Msa0837870 | MtrunA17_Chr3g0109611 | 36.842 | 152 | 89 | 3 | 71 | 218 | 15 | 163 | 1.67e-22 | 102 |
| Msa0837870 | MtrunA17_Chr3g0109591 | 34.839 | 155 | 94 | 3 | 65 | 215 | 9 | 160 | 2.75e-22 | 100 |
| Msa0837870 | MtrunA17_Chr3g0145221 | 58.904 | 73 | 19 | 1 | 46 | 118 | 214 | 275 | 2.77e-20 | 92.8 |
| Msa0837870 | MtrunA17_Chr3g0145251 | 59.649 | 57 | 23 | 0 | 336 | 392 | 160 | 216 | 2.34e-15 | 80.1 |
| Msa0837870 | MtrunA17_Chr3g0145241 | 47.887 | 71 | 37 | 0 | 176 | 246 | 1 | 71 | 6.13e-14 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837870 | AT2G18090.2 | 60.000 | 175 | 67 | 2 | 62 | 234 | 70 | 243 | 9.60e-72 | 249 |
| Msa0837870 | AT2G18090.2 | 40.625 | 96 | 46 | 3 | 336 | 426 | 458 | 547 | 5.26e-12 | 69.7 |
| Msa0837870 | AT2G18090.1 | 60.000 | 175 | 67 | 2 | 62 | 234 | 70 | 243 | 1.42e-71 | 249 |
| Msa0837870 | AT2G18090.1 | 55.769 | 52 | 23 | 0 | 336 | 387 | 458 | 509 | 2.10e-11 | 67.8 |
| Msa0837870 | AT3G51120.1 | 51.948 | 231 | 95 | 6 | 10 | 229 | 44 | 269 | 2.24e-68 | 244 |
| Msa0837870 | AT3G51120.1 | 47.436 | 78 | 38 | 1 | 324 | 398 | 716 | 793 | 2.57e-14 | 77.8 |
| Msa0837870 | AT2G16485.2 | 54.190 | 179 | 79 | 3 | 70 | 247 | 598 | 774 | 5.87e-58 | 214 |
| Msa0837870 | AT2G16485.2 | 50.909 | 55 | 27 | 0 | 334 | 388 | 1292 | 1346 | 1.47e-11 | 68.9 |
| Msa0837870 | AT2G16485.1 | 54.190 | 179 | 79 | 3 | 70 | 247 | 598 | 774 | 6.01e-58 | 214 |
| Msa0837870 | AT2G16485.1 | 50.909 | 55 | 27 | 0 | 334 | 388 | 1307 | 1361 | 1.59e-11 | 68.6 |
| Msa0837870 | AT5G63700.1 | 36.478 | 159 | 92 | 4 | 74 | 226 | 25 | 180 | 2.79e-26 | 114 |
| Msa0837870 | AT5G63700.2 | 36.478 | 159 | 92 | 4 | 74 | 226 | 25 | 180 | 4.09e-26 | 113 |
Find 202 sgRNAs with CRISPR-Local
Find 364 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAATCAGCAAACTATATC+TGG | 0.196965 | 5_4:-11981855 | Msa0837870:CDS |
| TGAGCGGCAATGATACATTT+TGG | 0.197931 | 5_4:+11982693 | None:intergenic |
| TGATTCAGTTTCAAATCTTT+TGG | 0.228594 | 5_4:-11982099 | Msa0837870:CDS |
| CCCTTAGCCTTCTTGTTTAT+AGG | 0.232558 | 5_4:+11983106 | None:intergenic |
| TGACAAGAAATTTCACATTT+AGG | 0.235639 | 5_4:+11982389 | None:intergenic |
| GCTATTTATCTTTAGTCTTT+AGG | 0.235773 | 5_4:-11981137 | Msa0837870:three_prime_UTR |
| TCCTTCAAATTCACCTTTCA+TGG | 0.246825 | 5_4:-11985291 | Msa0837870:exon |
| CTCCTTTCCCAGGTATTTGC+TGG | 0.263713 | 5_4:-11981651 | Msa0837870:CDS |
| CCTCGCTCTGCTTGACAATC+TGG | 0.265321 | 5_4:+11982567 | None:intergenic |
| CAGATTCATCTGTACCATTA+GGG | 0.289928 | 5_4:+11982516 | None:intergenic |
| CAACTGTGAACAACAGTCTT+TGG | 0.297579 | 5_4:-11982672 | Msa0837870:CDS |
| TCTCCTCCGGTGACCGGAAT+TGG | 0.300072 | 5_4:+11985224 | None:intergenic |
| CATCCCTTGCACAAGGAATA+TGG | 0.304040 | 5_4:+11983586 | None:intergenic |
| CTTTAAGATGATGACGCTTC+CGG | 0.306685 | 5_4:+11983179 | None:intergenic |
| GTATGCTTCATTTGCTTTGA+TGG | 0.312007 | 5_4:-11985056 | Msa0837870:CDS |
| ACAGATTCATCTGTACCATT+AGG | 0.319043 | 5_4:+11982515 | None:intergenic |
| GAACAGTGCCCAAGGAATTA+AGG | 0.342151 | 5_4:-11983479 | Msa0837870:intron |
| GAGAATCCGGGGCAATCTTC+TGG | 0.344732 | 5_4:-11982170 | Msa0837870:CDS |
| CACAGCAACGACATACTAAA+AGG | 0.351524 | 5_4:+11982824 | None:intergenic |
| TCTCTCCAGATCTCAGAATA+TGG | 0.356724 | 5_4:-11982778 | Msa0837870:CDS |
| AGACCATTACCTTAATTCCT+TGG | 0.360246 | 5_4:+11983470 | None:intergenic |
| ATCAATGATGGCACTGATGC+AGG | 0.365231 | 5_4:-11982962 | Msa0837870:CDS |
| TTTAAGATGATGACGCTTCC+GGG | 0.365840 | 5_4:+11983180 | None:intergenic |
| AAAAGAATGTTGTTATAAAC+AGG | 0.366748 | 5_4:+11981073 | None:intergenic |
| GGAATTGGAGGTGGAATTAC+CGG | 0.371970 | 5_4:+11985239 | None:intergenic |
| TGGATGATGGCAGCACTCTT+TGG | 0.372356 | 5_4:-11982140 | Msa0837870:CDS |
| CCCATGGAAATTGATGAGTT+TGG | 0.376010 | 5_4:+11981626 | None:intergenic |
| AACTGTGAACAACAGTCTTT+GGG | 0.383075 | 5_4:-11982671 | Msa0837870:CDS |
| TCATCGTTGCTTCACTCTAC+AGG | 0.389729 | 5_4:-11982899 | Msa0837870:CDS |
| ACAGCCAGTCTGGCATTATC+AGG | 0.391683 | 5_4:-11982870 | Msa0837870:CDS |
| GGTAATTCCACCTCCAATTC+CGG | 0.395388 | 5_4:-11985237 | Msa0837870:CDS |
| CCTTTACCTGCATCAAAATC+TGG | 0.396203 | 5_4:+11981963 | None:intergenic |
| GGCAATCTTCTGGTCAGAAC+TGG | 0.396564 | 5_4:-11982160 | Msa0837870:CDS |
| TCCTTCGGCTTCTTCACAAC+CGG | 0.406432 | 5_4:+11985089 | None:intergenic |
| GACCATTACCTTAATTCCTT+GGG | 0.410068 | 5_4:+11983471 | None:intergenic |
| AGAAGGCTAAGGGAAATGTT+TGG | 0.415137 | 5_4:-11983096 | Msa0837870:CDS |
| CATACATCTTCTTCATCCTT+CGG | 0.416063 | 5_4:+11985074 | None:intergenic |
| ATCCGACATTGAAGAGAATC+CGG | 0.417257 | 5_4:-11982183 | Msa0837870:CDS |
| CACATTTAGCTCACAGGTAG+TGG | 0.423134 | 5_4:+11983030 | None:intergenic |
| ACCCTCCATATTCTGAGATC+TGG | 0.425115 | 5_4:+11982773 | None:intergenic |
| GGAATTACCGGTTGCTGAAT+CGG | 0.425535 | 5_4:+11985251 | None:intergenic |
| CAGGGATGGAACAGCCAGTC+TGG | 0.425617 | 5_4:-11982880 | Msa0837870:CDS |
| GATCCAACTGGGAAGGTTCA+TGG | 0.426904 | 5_4:-11982848 | Msa0837870:CDS |
| GAAGGCTAAGGGAAATGTTT+GGG | 0.432087 | 5_4:-11983095 | Msa0837870:CDS |
| TGGCATTATCAGGATCCAAC+TGG | 0.436208 | 5_4:-11982860 | Msa0837870:CDS |
| CACTGTTCATGTTCATGCTC+CGG | 0.436705 | 5_4:-11985108 | Msa0837870:CDS |
| TGCACATCTGCTTGCTGAAA+CGG | 0.437547 | 5_4:+11981876 | None:intergenic |
| GTTTGGTTCCAGCAAATACC+TGG | 0.442053 | 5_4:+11981643 | None:intergenic |
| TATGTGCAGGCTCCTTTCCC+AGG | 0.444452 | 5_4:-11981661 | Msa0837870:intron |
| CCACCCACCGATTCAGCAAC+CGG | 0.445418 | 5_4:-11985258 | Msa0837870:CDS |
| ATTTCCATTTCTCAGCTAAA+CGG | 0.448596 | 5_4:+11984832 | None:intergenic |
| CTTAAAGTTGACACTGGTTG+TGG | 0.455952 | 5_4:-11983163 | Msa0837870:CDS |
| CTTCATTGTCGAGGAAGTAA+TGG | 0.458491 | 5_4:-11981027 | Msa0837870:three_prime_UTR |
| ATCTACTATACAGGAATTCT+CGG | 0.459300 | 5_4:+11983138 | None:intergenic |
| CACTTGTTCTATGTGATCAT+CGG | 0.460519 | 5_4:-11985028 | Msa0837870:intron |
| ACTATTTGAATCTACTATAC+AGG | 0.461919 | 5_4:+11983129 | None:intergenic |
| CCCCGGATTCTCTTCAATGT+CGG | 0.462369 | 5_4:+11982181 | None:intergenic |
| TCTGAGGGTCCGAGTAATAG+TGG | 0.465669 | 5_4:-11982224 | Msa0837870:CDS |
| CATTACTTCCTCGACAATGA+AGG | 0.466624 | 5_4:+11981028 | None:intergenic |
| GTTTCAAGACTAGGAGAGTC+TGG | 0.467881 | 5_4:-11982938 | Msa0837870:CDS |
| AAATGTTTGGGACAGTGTCT+TGG | 0.472814 | 5_4:-11983083 | Msa0837870:CDS |
| GGTGATGCTCTGAGCTCCTC+AGG | 0.475026 | 5_4:-11981942 | Msa0837870:CDS |
| GTTAATTCTCCTCCGGTGAC+CGG | 0.477455 | 5_4:+11985218 | None:intergenic |
| GGAAAATAAAGAAAATAGTC+AGG | 0.478338 | 5_4:-11982633 | Msa0837870:CDS |
| CAAGCAGAGCGAGGAAGAAA+AGG | 0.480349 | 5_4:-11982558 | Msa0837870:CDS |
| CGAAATGAATACTAATGAAT+CGG | 0.480617 | 5_4:-11982987 | Msa0837870:CDS |
| TGAACATGAACAGTGCCTTT+CGG | 0.481119 | 5_4:+11985116 | None:intergenic |
| CCTCCGGTGACCGGAATTGG+AGG | 0.484238 | 5_4:+11985227 | None:intergenic |
| TTCTCATCAAAGGCAGTTGA+AGG | 0.484294 | 5_4:+11982338 | None:intergenic |
| GTCATTCAAATTCTCATCAA+AGG | 0.485039 | 5_4:+11982328 | None:intergenic |
| CGGAACCTTCCGCCGAAGAG+TGG | 0.485800 | 5_4:-11982043 | Msa0837870:CDS |
| GACAGTGTCTTGGACGGTGT+TGG | 0.488955 | 5_4:-11983073 | Msa0837870:CDS |
| TCCGACATTGAAGAGAATCC+GGG | 0.491196 | 5_4:-11982182 | Msa0837870:CDS |
| CACATCAATATCCCACTCTT+CGG | 0.493275 | 5_4:+11982031 | None:intergenic |
| ATAATCAGCAAACTATATCT+GGG | 0.493948 | 5_4:-11981854 | Msa0837870:CDS |
| GCTATAACTGATTGTTTACA+AGG | 0.495168 | 5_4:-11981996 | Msa0837870:CDS |
| TCCTATAAACAAGAAGGCTA+AGG | 0.495961 | 5_4:-11983107 | Msa0837870:CDS |
| GGTTCCAATGGGTCTTCTGA+GGG | 0.497682 | 5_4:-11982239 | Msa0837870:CDS |
| ACCAAACTCATCAATTTCCA+TGG | 0.504868 | 5_4:-11981627 | Msa0837870:CDS |
| GGTCACCGGAGGAGAATTAA+CGG | 0.512447 | 5_4:-11985216 | Msa0837870:CDS |
| GGGTTCCAATGGGTCTTCTG+AGG | 0.514058 | 5_4:-11982240 | Msa0837870:CDS |
| TTGTCCTAAGGCGTATCATC+CGG | 0.517465 | 5_4:-11984883 | Msa0837870:CDS |
| GGTAGTGCAAGGTGTACGTC+GGG | 0.517896 | 5_4:+11982359 | None:intergenic |
| CGGTTGCTCATTTGCTACAG+TGG | 0.521421 | 5_4:+11981896 | None:intergenic |
| CCGGTGACCGGAATTGGAGG+TGG | 0.522586 | 5_4:+11985230 | None:intergenic |
| CATCGTTGCTTCACTCTACA+GGG | 0.522838 | 5_4:-11982898 | Msa0837870:CDS |
| AGAAACCGTTAATTCTCCTC+CGG | 0.525614 | 5_4:+11985211 | None:intergenic |
| TTTGGATGCAGTAGCGGCGG+AGG | 0.526604 | 5_4:-11982081 | Msa0837870:CDS |
| AATGAATCGGCAATCAATGA+TGG | 0.530611 | 5_4:-11982974 | Msa0837870:CDS |
| ATTATATAGCAAAATAGAGT+AGG | 0.532114 | 5_4:+11980984 | None:intergenic |
| TCAATGATGGCACTGATGCA+GGG | 0.532158 | 5_4:-11982961 | Msa0837870:CDS |
| CATTCCACCACTTCATCAGA+AGG | 0.533113 | 5_4:+11982302 | None:intergenic |
| CCTATAAACAAGAAGGCTAA+GGG | 0.533302 | 5_4:-11983106 | Msa0837870:CDS |
| TTCTGACCAGAAGATTGCCC+CGG | 0.533652 | 5_4:+11982164 | None:intergenic |
| AACTTACGAGGTGGACCCCA+TGG | 0.535838 | 5_4:+11981610 | None:intergenic |
| AATGGAAATGTGGGTTCCAA+TGG | 0.536046 | 5_4:-11982251 | Msa0837870:CDS |
| GTGTACTGGTTGTACTTGAA+AGG | 0.537125 | 5_4:-11983289 | Msa0837870:CDS |
| TGCTGTTCGTGCGAGTTGCA+AGG | 0.542742 | 5_4:-11983212 | Msa0837870:CDS |
| TCCATGAAAGGTGAATTTGA+AGG | 0.542867 | 5_4:+11985290 | None:intergenic |
| CCACCTCCAATTCCGGTCAC+CGG | 0.545856 | 5_4:-11985230 | Msa0837870:CDS |
| AGTGTCTTGGACGGTGTTGG+AGG | 0.546056 | 5_4:-11983070 | Msa0837870:CDS |
| ATTGGAAGTGAATGGAAATG+TGG | 0.546125 | 5_4:-11982261 | Msa0837870:CDS |
| TTTGGGAGCCAATGTTACAT+TGG | 0.547021 | 5_4:-11982654 | Msa0837870:CDS |
| TTCTGGTCAGAACTGGATGA+TGG | 0.548380 | 5_4:-11982153 | Msa0837870:CDS |
| TCACTTTGCCCACTATTACT+CGG | 0.553393 | 5_4:+11982215 | None:intergenic |
| AAATGTGAAATTTCTTGTCA+TGG | 0.555258 | 5_4:-11982386 | Msa0837870:CDS |
| GTTAACTTGGCAGATTACAT+TGG | 0.556462 | 5_4:-11981162 | Msa0837870:exon |
| CAGCGTCGGTAGCGTTGACT+CGG | 0.557290 | 5_4:+11985171 | None:intergenic |
| GCAGATGGGAATATCAGTGA+TGG | 0.557781 | 5_4:-11982446 | Msa0837870:CDS |
| ATATCCCACTCTTCGGCGGA+AGG | 0.557902 | 5_4:+11982038 | None:intergenic |
| ATTAAGTATCCGATTCAAGT+TGG | 0.557909 | 5_4:+11981098 | None:intergenic |
| GCACGAACAGCACCTTTCCA+AGG | 0.558666 | 5_4:+11983223 | None:intergenic |
| GCAGAGCGAGGAAGAAAAGG+TGG | 0.561088 | 5_4:-11982555 | Msa0837870:CDS |
| CCAAACTCATCAATTTCCAT+GGG | 0.564845 | 5_4:-11981626 | Msa0837870:CDS |
| TTGCAGAAATTTATAATCAG+CGG | 0.565688 | 5_4:-11980922 | Msa0837870:three_prime_UTR |
| TGTATTCACATTTAGCTCAC+AGG | 0.568532 | 5_4:+11983024 | None:intergenic |
| GGATCCTGATAATGCCAGAC+TGG | 0.570283 | 5_4:+11982866 | None:intergenic |
| TGCTTCATTTGCTTTGATGG+TGG | 0.571881 | 5_4:-11985053 | Msa0837870:CDS |
| AAATAGTCCTATAAACAAGA+AGG | 0.573367 | 5_4:-11983113 | Msa0837870:CDS |
| GATATTGATGTGTTCACTGA+TGG | 0.573671 | 5_4:-11982020 | Msa0837870:CDS |
| TGGCATCTATGTAGCGATTG+TGG | 0.573894 | 5_4:-11983640 | Msa0837870:CDS |
| AATAAAGAAAATAGTCAGGA+TGG | 0.574172 | 5_4:-11982629 | Msa0837870:CDS |
| CTTGCACAAGGAATATGGAC+AGG | 0.580161 | 5_4:+11983591 | None:intergenic |
| GATGAATCTGTTAAGAGCAA+CGG | 0.581049 | 5_4:-11982503 | Msa0837870:CDS |
| CTCACCTTCCTTCATTGTCG+AGG | 0.583723 | 5_4:-11981036 | Msa0837870:three_prime_UTR |
| TTGGAAGTGAATGGAAATGT+GGG | 0.583867 | 5_4:-11982260 | Msa0837870:CDS |
| GTTTGTGCGGAGCATGCTTG+AGG | 0.586691 | 5_4:-11983519 | Msa0837870:CDS |
| GGACCATGAACCTTCCCAGT+TGG | 0.586869 | 5_4:+11982845 | None:intergenic |
| GGAACCTTCCGCCGAAGAGT+GGG | 0.589294 | 5_4:-11982042 | Msa0837870:CDS |
| TGTCCATATTCCTTGTGCAA+GGG | 0.590101 | 5_4:-11983589 | Msa0837870:CDS |
| GGCATTATCAGGATCCAACT+GGG | 0.591161 | 5_4:-11982859 | Msa0837870:CDS |
| CAACGCTACCGACGCTGACG+TGG | 0.591602 | 5_4:-11985165 | Msa0837870:CDS |
| AGTGTGACTACACAAGCAGA+TGG | 0.591958 | 5_4:-11982461 | Msa0837870:CDS |
| GTTAGTGTCAGAGGAAACAA+AGG | 0.592996 | 5_4:-11983541 | Msa0837870:CDS |
| GATTCATCTGTACCATTAGG+GGG | 0.594328 | 5_4:+11982518 | None:intergenic |
| CATCATCTTAAAGTTGACAC+TGG | 0.595832 | 5_4:-11983169 | Msa0837870:CDS |
| CTGATCGAGAACAGTGCCCA+AGG | 0.596069 | 5_4:-11983487 | Msa0837870:CDS |
| CACGCCGGATGATACGCCTT+AGG | 0.596118 | 5_4:+11984879 | None:intergenic |
| CTCCAGATCTCAGAATATGG+AGG | 0.596407 | 5_4:-11982775 | Msa0837870:CDS |
| CGGACCCTCAGAAGACCCAT+TGG | 0.597449 | 5_4:+11982235 | None:intergenic |
| CAATGATGGCACTGATGCAG+GGG | 0.597789 | 5_4:-11982960 | Msa0837870:CDS |
| CTGTCCATATTCCTTGTGCA+AGG | 0.598848 | 5_4:-11983590 | Msa0837870:CDS |
| GTAGCGTTGACTCGGATCAT+CGG | 0.600729 | 5_4:+11985179 | None:intergenic |
| ATTTGCTACAGTGGATTGAG+AGG | 0.601818 | 5_4:+11981905 | None:intergenic |
| TCTGCTTGTGTAGTCACACT+AGG | 0.601867 | 5_4:+11982464 | None:intergenic |
| GATGAAGTGGTGGAATGTCA+TGG | 0.602857 | 5_4:-11982296 | Msa0837870:CDS |
| GATGCAGGGGTTTCAAGACT+AGG | 0.604571 | 5_4:-11982947 | Msa0837870:CDS |
| GTTGCTTCACTCTACAGGGA+TGG | 0.604743 | 5_4:-11982894 | Msa0837870:CDS |
| TTTGCTACAGTGGATTGAGA+GGG | 0.605774 | 5_4:+11981906 | None:intergenic |
| TCCAGATCTCAGAATATGGA+GGG | 0.608096 | 5_4:-11982774 | Msa0837870:CDS |
| CGCTACCGACGCTGACGTGG+CGG | 0.608936 | 5_4:-11985162 | Msa0837870:CDS |
| AAACGCGGTCGTCCGCCGAA+AGG | 0.610043 | 5_4:-11985131 | Msa0837870:CDS |
| CAGATGGGAATATCAGTGAT+GGG | 0.610058 | 5_4:-11982445 | Msa0837870:CDS |
| GTTGCAAGGTTCAAACTCCC+CGG | 0.610227 | 5_4:-11983198 | Msa0837870:CDS |
| ATTACCGGTTGCTGAATCGG+TGG | 0.610608 | 5_4:+11985254 | None:intergenic |
| ATGGAAATGTGGGTTCCAAT+GGG | 0.610667 | 5_4:-11982250 | Msa0837870:CDS |
| ATCAATATCCCACTCTTCGG+CGG | 0.610806 | 5_4:+11982034 | None:intergenic |
| TTACCGGTTGCTGAATCGGT+GGG | 0.611860 | 5_4:+11985255 | None:intergenic |
| TAGTCAGGATGGTCTTAGCA+AGG | 0.613965 | 5_4:-11982618 | Msa0837870:CDS |
| CTGAGGGTCCGAGTAATAGT+GGG | 0.616707 | 5_4:-11982223 | Msa0837870:CDS |
| TTCCAGCAAATACCTGGGAA+AGG | 0.617718 | 5_4:+11981649 | None:intergenic |
| GACTGTTGTTCACAGTTGAG+CGG | 0.623812 | 5_4:+11982677 | None:intergenic |
| GTGTGACTACACAAGCAGAT+GGG | 0.629009 | 5_4:-11982460 | Msa0837870:CDS |
| TTGAAACTGAATCATCAACT+AGG | 0.629198 | 5_4:+11982108 | None:intergenic |
| TTCATCTGTACCATTAGGGG+GGG | 0.630127 | 5_4:+11982520 | None:intergenic |
| TTAAGATGATGACGCTTCCG+GGG | 0.630843 | 5_4:+11983181 | None:intergenic |
| TTATCAGGATCCAACTGGGA+AGG | 0.637004 | 5_4:-11982855 | Msa0837870:CDS |
| CAGAGCGAGGAAGAAAAGGT+GGG | 0.637763 | 5_4:-11982554 | Msa0837870:CDS |
| ATGAAGTGGTGGAATGTCAT+GGG | 0.638660 | 5_4:-11982295 | Msa0837870:CDS |
| GAATCTGTTAAGAGCAACGG+AGG | 0.639328 | 5_4:-11982500 | Msa0837870:CDS |
| AATATCAGTGATGGGCAAAG+TGG | 0.641070 | 5_4:-11982437 | Msa0837870:CDS |
| CCAGATTGTCAAGCAGAGCG+AGG | 0.642283 | 5_4:-11982567 | Msa0837870:CDS |
| ACTCACCGCCACGTCAGCGT+CGG | 0.643993 | 5_4:+11985157 | None:intergenic |
| GACAGGTATAGCACATGTAG+TGG | 0.644673 | 5_4:+11983608 | None:intergenic |
| TTTGGTTCCAGCAAATACCT+GGG | 0.645945 | 5_4:+11981644 | None:intergenic |
| TGACAAACCTTCTGATGAAG+TGG | 0.646213 | 5_4:-11982309 | Msa0837870:CDS |
| AGATTCATCTGTACCATTAG+GGG | 0.648209 | 5_4:+11982517 | None:intergenic |
| CCTCCAATTCCGGTCACCGG+AGG | 0.649112 | 5_4:-11985227 | Msa0837870:CDS |
| TCGTTGCTGTGCAAGTTGAA+AGG | 0.650161 | 5_4:-11982812 | Msa0837870:CDS |
| ATTCATCTGTACCATTAGGG+GGG | 0.651828 | 5_4:+11982519 | None:intergenic |
| ATGGTCTTAGCAAGGCAACA+AGG | 0.654573 | 5_4:-11982610 | Msa0837870:CDS |
| CAAACCTTCTGATGAAGTGG+TGG | 0.654646 | 5_4:-11982306 | Msa0837870:CDS |
| AGGCAGTTGAAGGTAGTGCA+AGG | 0.655786 | 5_4:+11982348 | None:intergenic |
| CGACAATGAAGGAAGGTGAG+AGG | 0.657376 | 5_4:+11981039 | None:intergenic |
| AGAGGAAACAAAGGTTTGTG+CGG | 0.658304 | 5_4:-11983532 | Msa0837870:CDS |
| CCGGTTGCTGAATCGGTGGG+TGG | 0.661540 | 5_4:+11985258 | None:intergenic |
| ACTTCCTCGACAATGAAGGA+AGG | 0.664200 | 5_4:+11981032 | None:intergenic |
| TAATCAGCAAACTATATCTG+GGG | 0.665489 | 5_4:-11981853 | Msa0837870:CDS |
| AGGTAGTGCAAGGTGTACGT+CGG | 0.666824 | 5_4:+11982358 | None:intergenic |
| TGTGTAGTCACACTAGGAGA+CGG | 0.667876 | 5_4:+11982470 | None:intergenic |
| GTTTGGGACAGTGTCTTGGA+CGG | 0.669837 | 5_4:-11983079 | Msa0837870:CDS |
| TTAGCTGAGAAATGGAAATG+TGG | 0.673734 | 5_4:-11984828 | Msa0837870:intron |
| TCATCTCGTTTAACACACGC+CGG | 0.683606 | 5_4:+11984864 | None:intergenic |
| GGAGGAGAAACACAGTGTCA+CGG | 0.684082 | 5_4:-11982063 | Msa0837870:CDS |
| TGTGAAATTTCTTGTCATGG+TGG | 0.684535 | 5_4:-11982383 | Msa0837870:CDS |
| CCGACATTGAAGAGAATCCG+GGG | 0.685264 | 5_4:-11982181 | Msa0837870:CDS |
| TCCGGTTGTGAAGAAGCCGA+AGG | 0.686799 | 5_4:-11985090 | Msa0837870:CDS |
| ACATGAACAGTGCCTTTCGG+CGG | 0.688520 | 5_4:+11985119 | None:intergenic |
| GGGTAAATGTAAATCACCTG+AGG | 0.697059 | 5_4:+11981926 | None:intergenic |
| AATCTGTTAAGAGCAACGGA+GGG | 0.752755 | 5_4:-11982499 | Msa0837870:CDS |
| CAAACTCATCAATTTCCATG+GGG | 0.762481 | 5_4:-11981625 | Msa0837870:CDS |
| GTGGCGGTGAGTAAGAAACG+CGG | 0.821614 | 5_4:-11985146 | Msa0837870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAAATAAACGATTTTAT+CGG | + | chr5_4:11981385-11981404 | None:intergenic | 10.0% |
| !! | TTAAAGAAAAAAAAAAACTT+TGG | + | chr5_4:11984928-11984947 | None:intergenic | 10.0% |
| !!! | AATGTTAATCTTTCTATTTT+AGG | - | chr5_4:11981408-11981427 | Msa0837870:intron | 15.0% |
| !!! | ATGTTAATCTTTCTATTTTA+GGG | - | chr5_4:11981409-11981428 | Msa0837870:intron | 15.0% |
| !!! | GAAATTTGATCTTTTTTTTT+TGG | - | chr5_4:11981760-11981779 | Msa0837870:intron | 15.0% |
| !! | ATATAATTGTATGTAATCAA+CGG | - | chr5_4:11984528-11984547 | Msa0837870:intron | 15.0% |
| !! | AATTTACAATTCATTGAATT+TGG | - | chr5_4:11985100-11985119 | Msa0837870:CDS | 15.0% |
| !!! | TTAATAAGTTTTTTGTTTTC+AGG | - | chr5_4:11985132-11985151 | Msa0837870:CDS | 15.0% |
| !!! | TGTTAATCTTTCTATTTTAG+GGG | - | chr5_4:11981410-11981429 | Msa0837870:intron | 20.0% |
| !!! | TGTTATTTTTGTGTTTATTG+TGG | - | chr5_4:11981513-11981532 | Msa0837870:intron | 20.0% |
| !! | AATTGAACTTAATTATGAGT+TGG | - | chr5_4:11981592-11981611 | Msa0837870:intron | 20.0% |
| !!! | ACTTATTTTAAATGACGTTT+CGG | + | chr5_4:11981696-11981715 | None:intergenic | 20.0% |
| !!! | ATGTGATTGTTTTTCTTTTA+TGG | - | chr5_4:11981817-11981836 | Msa0837870:intron | 20.0% |
| !!! | TGTGATTGTTTTTCTTTTAT+GGG | - | chr5_4:11981818-11981837 | Msa0837870:intron | 20.0% |
| !! | CTCTATATTTGAAAGTAAAA+TGG | - | chr5_4:11981905-11981924 | Msa0837870:CDS | 20.0% |
| !! | AAAAACGTGAATGAAAAATT+AGG | - | chr5_4:11982286-11982305 | Msa0837870:CDS | 20.0% |
| !! | AAAACGTGAATGAAAAATTA+GGG | - | chr5_4:11982287-11982306 | Msa0837870:CDS | 20.0% |
| !!! | ATTTTTATTTGAGTGTCTAA+TGG | - | chr5_4:11982613-11982632 | Msa0837870:CDS | 20.0% |
| !!! | TTAAGCTTTTCATGTATAAA+GGG | + | chr5_4:11982915-11982934 | None:intergenic | 20.0% |
| !!! | ATTAAGCTTTTCATGTATAA+AGG | + | chr5_4:11982916-11982935 | None:intergenic | 20.0% |
| !! | TTTATACATGAAAAGCTTAA+TGG | - | chr5_4:11982915-11982934 | Msa0837870:CDS | 20.0% |
| !!! | TTTATTTTCCAATGTAACAT+TGG | + | chr5_4:11983673-11983692 | None:intergenic | 20.0% |
| !! | TATAATTGTATGTAATCAAC+GGG | - | chr5_4:11984529-11984548 | Msa0837870:intron | 20.0% |
| !!! | AGTTTAAATTTAGATTTGCT+AGG | - | chr5_4:11984606-11984625 | Msa0837870:intron | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | + | chr5_4:11984864-11984883 | None:intergenic | 20.0% |
| !! | GTAACATAGTATTAATTGAA+GGG | + | chr5_4:11984898-11984917 | None:intergenic | 20.0% |
| !! | TGTAACATAGTATTAATTGA+AGG | + | chr5_4:11984899-11984918 | None:intergenic | 20.0% |
| !! | AAATTATCCTAATCAACTAT+TGG | + | chr5_4:11984962-11984981 | None:intergenic | 20.0% |
| !! | AATAGTTGATTAGGATAATT+TGG | - | chr5_4:11984961-11984980 | Msa0837870:intron | 20.0% |
| !! | AAAAGAATGTTGTTATAAAC+AGG | + | chr5_4:11985246-11985265 | None:intergenic | 20.0% |
| !! | ATTATATAGCAAAATAGAGT+AGG | + | chr5_4:11985335-11985354 | None:intergenic | 20.0% |
| !!! | TTTTATTTAAACGAGAGAAA+CGG | - | chr5_4:11985354-11985373 | Msa0837870:five_prime_UTR | 20.0% |
| ! | ATGAAGTTGAAAAATGAGAA+TGG | + | chr5_4:11980909-11980928 | None:intergenic | 25.0% |
| ! | TTCTACTGATGATTAGAATT+TGG | - | chr5_4:11981664-11981683 | Msa0837870:intron | 25.0% |
| ! | TCTACTGATGATTAGAATTT+GGG | - | chr5_4:11981665-11981684 | Msa0837870:intron | 25.0% |
| !! | GAATTTAGTGTCTTTGTTTA+TGG | - | chr5_4:11982060-11982079 | Msa0837870:CDS | 25.0% |
| ! | TTCCTTGATCTATATGATAT+TGG | - | chr5_4:11982153-11982172 | Msa0837870:CDS | 25.0% |
| ! | TACCAATATCATATAGATCA+AGG | + | chr5_4:11982158-11982177 | None:intergenic | 25.0% |
| ! | AAAAACAGGAATGAAAATGT+AGG | - | chr5_4:11982240-11982259 | Msa0837870:CDS | 25.0% |
| ! | AAAACAGGAATGAAAATGTA+GGG | - | chr5_4:11982241-11982260 | Msa0837870:CDS | 25.0% |
| ! | ATAAAACATGATCTATGCAA+GGG | + | chr5_4:11982392-11982411 | None:intergenic | 25.0% |
| ! | TATAAAACATGATCTATGCA+AGG | + | chr5_4:11982393-11982412 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTTGCATTGCCT+AGG | - | chr5_4:11982652-11982671 | Msa0837870:CDS | 25.0% |
| ! | ACTATTTGAATCTACTATAC+AGG | + | chr5_4:11983190-11983209 | None:intergenic | 25.0% |
| ! | AAATAGTCCTATAAACAAGA+AGG | - | chr5_4:11983203-11983222 | Msa0837870:CDS | 25.0% |
| ! | CGAAATGAATACTAATGAAT+CGG | - | chr5_4:11983329-11983348 | Msa0837870:CDS | 25.0% |
| ! | GGAAAATAAAGAAAATAGTC+AGG | - | chr5_4:11983683-11983702 | Msa0837870:intron | 25.0% |
| ! | AATAAAGAAAATAGTCAGGA+TGG | - | chr5_4:11983687-11983706 | Msa0837870:intron | 25.0% |
| ! | TGACAAGAAATTTCACATTT+AGG | + | chr5_4:11983930-11983949 | None:intergenic | 25.0% |
| ! | AAATGTGAAATTTCTTGTCA+TGG | - | chr5_4:11983930-11983949 | Msa0837870:intron | 25.0% |
| ! | TCATGGGAATGATAAAAAAT+TGG | - | chr5_4:11984037-11984056 | Msa0837870:intron | 25.0% |
| ! | GATAAAAAATTGGAAGTGAA+TGG | - | chr5_4:11984047-11984066 | Msa0837870:intron | 25.0% |
| !! | TGATTCAGTTTCAAATCTTT+TGG | - | chr5_4:11984217-11984236 | Msa0837870:intron | 25.0% |
| ! | ATAATCAGCAAACTATATCT+GGG | - | chr5_4:11984462-11984481 | Msa0837870:intron | 25.0% |
| !! | ATATTTTACACAAGACCAAT+GGG | + | chr5_4:11984573-11984592 | None:intergenic | 25.0% |
| !! | TATATTTTACACAAGACCAA+TGG | + | chr5_4:11984574-11984593 | None:intergenic | 25.0% |
| ! | AAAATAGTCATTAGTGAAGA+AGG | + | chr5_4:11984741-11984760 | None:intergenic | 25.0% |
| !!! | GACACTCATTTTAAAACAAA+CGG | + | chr5_4:11984794-11984813 | None:intergenic | 25.0% |
| ! | AAACAAACCAATAGTTGATT+AGG | - | chr5_4:11984952-11984971 | Msa0837870:intron | 25.0% |
| !!! | ACTCATTTTTTTTGAAACAG+AGG | - | chr5_4:11985051-11985070 | Msa0837870:CDS | 25.0% |
| !!! | CTCATTTTTTTTGAAACAGA+GGG | - | chr5_4:11985052-11985071 | Msa0837870:CDS | 25.0% |
| !!! | TTTTTGTTTTCAGGTTAACT+TGG | - | chr5_4:11985141-11985160 | Msa0837870:CDS | 25.0% |
| !! | GCTATTTATCTTTAGTCTTT+AGG | - | chr5_4:11985179-11985198 | Msa0837870:CDS | 25.0% |
| ! | TTGCAGAAATTTATAATCAG+CGG | - | chr5_4:11985394-11985413 | Msa0837870:five_prime_UTR | 25.0% |
| AGAGAGAAACCCTAAAAATT+GGG | + | chr5_4:11980971-11980990 | None:intergenic | 30.0% | |
| ATTTCCATTTCTCAGCTAAA+CGG | + | chr5_4:11981487-11981506 | None:intergenic | 30.0% | |
| !!! | AAGTTTTATTTTGTGCGAAG+TGG | - | chr5_4:11981712-11981731 | Msa0837870:intron | 30.0% |
| CTAAATTCATGCCTAATGAA+GGG | + | chr5_4:11982048-11982067 | None:intergenic | 30.0% | |
| ACTAAATTCATGCCTAATGA+AGG | + | chr5_4:11982049-11982068 | None:intergenic | 30.0% | |
| ATGGAAATTGTTGAAGATCA+AGG | - | chr5_4:11982079-11982098 | Msa0837870:CDS | 30.0% | |
| ! | TTGGTATGTTACTTCATGTT+TGG | - | chr5_4:11982172-11982191 | Msa0837870:CDS | 30.0% |
| GTGTCAAAGATGTACTAATT+TGG | - | chr5_4:11982332-11982351 | Msa0837870:CDS | 30.0% | |
| CAAAGATGTACTAATTTGGA+AGG | - | chr5_4:11982336-11982355 | Msa0837870:CDS | 30.0% | |
| TACAATAGATTTCTCATGCA+TGG | - | chr5_4:11982411-11982430 | Msa0837870:CDS | 30.0% | |
| AAACATGTGGATAAATGTCT+TGG | - | chr5_4:11982454-11982473 | Msa0837870:CDS | 30.0% | |
| ATAAATGTCTTGGATTATGC+AGG | - | chr5_4:11982464-11982483 | Msa0837870:CDS | 30.0% | |
| TGATCAGCTTGTCAAAAATA+GGG | + | chr5_4:11982577-11982596 | None:intergenic | 30.0% | |
| ATCTACTATACAGGAATTCT+CGG | + | chr5_4:11983181-11983200 | None:intergenic | 30.0% | |
| !!! | AAAGTGGTTATTTTGAACGA+AGG | - | chr5_4:11983895-11983914 | Msa0837870:intron | 30.0% |
| !!! | AAGTGGTTATTTTGAACGAA+GGG | - | chr5_4:11983896-11983915 | Msa0837870:intron | 30.0% |
| GTCATTCAAATTCTCATCAA+AGG | + | chr5_4:11983991-11984010 | None:intergenic | 30.0% | |
| TTGAAACTGAATCATCAACT+AGG | + | chr5_4:11984211-11984230 | None:intergenic | 30.0% | |
| GCTATAACTGATTGTTTACA+AGG | - | chr5_4:11984320-11984339 | Msa0837870:intron | 30.0% | |
| CATAATCAGCAAACTATATC+TGG | - | chr5_4:11984461-11984480 | Msa0837870:intron | 30.0% | |
| TAATCAGCAAACTATATCTG+GGG | - | chr5_4:11984463-11984482 | Msa0837870:intron | 30.0% | |
| CTAATCAATCAATTATGTGC+AGG | - | chr5_4:11984642-11984661 | Msa0837870:intron | 30.0% | |
| !!! | ACTCATTTTAAAACAAACGG+AGG | + | chr5_4:11984791-11984810 | None:intergenic | 30.0% |
| ! | GATTTTAGACCAACTTGAAT+CGG | - | chr5_4:11985209-11985228 | Msa0837870:CDS | 30.0% |
| ATTAAGTATCCGATTCAAGT+TGG | + | chr5_4:11985221-11985240 | None:intergenic | 30.0% | |
| GAGAGAAACCCTAAAAATTG+GGG | + | chr5_4:11980970-11980989 | None:intergenic | 35.0% | |
| GAGAGAGAAACCCTAAAAAT+TGG | + | chr5_4:11980972-11980991 | None:intergenic | 35.0% | |
| TCCTTCAAATTCACCTTTCA+TGG | - | chr5_4:11981025-11981044 | Msa0837870:three_prime_UTR | 35.0% | |
| TCCATGAAAGGTGAATTTGA+AGG | + | chr5_4:11981029-11981048 | None:intergenic | 35.0% | |
| ! | TGGTGATTTTGTTCCATGAA+AGG | + | chr5_4:11981041-11981060 | None:intergenic | 35.0% |
| CATACATCTTCTTCATCCTT+CGG | + | chr5_4:11981245-11981264 | None:intergenic | 35.0% | |
| GTATGCTTCATTTGCTTTGA+TGG | - | chr5_4:11981260-11981279 | Msa0837870:intron | 35.0% | |
| CACTTGTTCTATGTGATCAT+CGG | - | chr5_4:11981288-11981307 | Msa0837870:intron | 35.0% | |
| ! | TTTTCCGTTTAGCTGAGAAA+TGG | - | chr5_4:11981480-11981499 | Msa0837870:intron | 35.0% |
| TTAGCTGAGAAATGGAAATG+TGG | - | chr5_4:11981488-11981507 | Msa0837870:intron | 35.0% | |
| AATGGTTCTTGTCTTTGTTC+TGG | - | chr5_4:11981923-11981942 | Msa0837870:CDS | 35.0% | |
| ATGGTTCTTGTCTTTGTTCT+GGG | - | chr5_4:11981924-11981943 | Msa0837870:CDS | 35.0% | |
| TTGCTTGTGTATTTGATGTC+TGG | - | chr5_4:11982010-11982029 | Msa0837870:CDS | 35.0% | |
| TGCTTGTGTATTTGATGTCT+GGG | - | chr5_4:11982011-11982030 | Msa0837870:CDS | 35.0% | |
| AATTGTTGAAGATCAAGGAG+TGG | - | chr5_4:11982084-11982103 | Msa0837870:CDS | 35.0% | |
| CAAGGAAAGAGAGAGAATTA+GGG | + | chr5_4:11982140-11982159 | None:intergenic | 35.0% | |
| TCAAGGAAAGAGAGAGAATT+AGG | + | chr5_4:11982141-11982160 | None:intergenic | 35.0% | |
| ! | ATGTTACTTCATGTTTGGTG+AGG | - | chr5_4:11982177-11982196 | Msa0837870:CDS | 35.0% |
| ! | TGTTACTTCATGTTTGGTGA+GGG | - | chr5_4:11982178-11982197 | Msa0837870:CDS | 35.0% |
| ! | CATTCACGTTTTTGTGATTC+TGG | + | chr5_4:11982279-11982298 | None:intergenic | 35.0% |
| !! | GTGTTTTTGCTTGAAACATG+TGG | - | chr5_4:11982441-11982460 | Msa0837870:CDS | 35.0% |
| GTGATCAGCTTGTCAAAAAT+AGG | + | chr5_4:11982578-11982597 | None:intergenic | 35.0% | |
| !!! | TTTTTTTGCATTGCCTAGGT+TGG | - | chr5_4:11982656-11982675 | Msa0837870:CDS | 35.0% |
| ! | TCTGATTTTGTTAGTGTCAG+AGG | - | chr5_4:11982766-11982785 | Msa0837870:CDS | 35.0% |
| GACCATTACCTTAATTCCTT+GGG | + | chr5_4:11982848-11982867 | None:intergenic | 35.0% | |
| AGACCATTACCTTAATTCCT+TGG | + | chr5_4:11982849-11982868 | None:intergenic | 35.0% | |
| ! | GCTTTTCATGTATAAAGGGA+GGG | + | chr5_4:11982911-11982930 | None:intergenic | 35.0% |
| ! | AGCTTTTCATGTATAAAGGG+AGG | + | chr5_4:11982912-11982931 | None:intergenic | 35.0% |
| CGCACTAAAAAAATAGCACA+AGG | + | chr5_4:11982963-11982982 | None:intergenic | 35.0% | |
| !!! | GCTATTTTTTTAGTGCGAAG+TGG | - | chr5_4:11982966-11982985 | Msa0837870:CDS | 35.0% |
| !! | ATTTTGATGATAGAAGCAGC+TGG | - | chr5_4:11982989-11983008 | Msa0837870:CDS | 35.0% |
| !! | TTTTGATGATAGAAGCAGCT+GGG | - | chr5_4:11982990-11983009 | Msa0837870:CDS | 35.0% |
| !! | AGTATCTTTTCAAGGTGTAC+TGG | - | chr5_4:11983013-11983032 | Msa0837870:CDS | 35.0% |
| CATCATCTTAAAGTTGACAC+TGG | - | chr5_4:11983147-11983166 | Msa0837870:CDS | 35.0% | |
| TCCTATAAACAAGAAGGCTA+AGG | - | chr5_4:11983209-11983228 | Msa0837870:CDS | 35.0% | |
| CCTATAAACAAGAAGGCTAA+GGG | - | chr5_4:11983210-11983229 | Msa0837870:CDS | 35.0% | |
| ! | TGTATTCACATTTAGCTCAC+AGG | + | chr5_4:11983295-11983314 | None:intergenic | 35.0% |
| AATGAATCGGCAATCAATGA+TGG | - | chr5_4:11983342-11983361 | Msa0837870:intron | 35.0% | |
| AACTGTGAACAACAGTCTTT+GGG | - | chr5_4:11983645-11983664 | Msa0837870:CDS | 35.0% | |
| AGATTCATCTGTACCATTAG+GGG | + | chr5_4:11983802-11983821 | None:intergenic | 35.0% | |
| CAGATTCATCTGTACCATTA+GGG | + | chr5_4:11983803-11983822 | None:intergenic | 35.0% | |
| ACAGATTCATCTGTACCATT+AGG | + | chr5_4:11983804-11983823 | None:intergenic | 35.0% | |
| GATGAATCTGTTAAGAGCAA+CGG | - | chr5_4:11983813-11983832 | Msa0837870:intron | 35.0% | |
| TGTGAAATTTCTTGTCATGG+TGG | - | chr5_4:11983933-11983952 | Msa0837870:intron | 35.0% | |
| ATTGGAAGTGAATGGAAATG+TGG | - | chr5_4:11984055-11984074 | Msa0837870:intron | 35.0% | |
| TTGGAAGTGAATGGAAATGT+GGG | - | chr5_4:11984056-11984075 | Msa0837870:intron | 35.0% | |
| ! | AAATCTTTTGGATGCAGTAG+CGG | - | chr5_4:11984229-11984248 | Msa0837870:intron | 35.0% |
| GATATTGATGTGTTCACTGA+TGG | - | chr5_4:11984296-11984315 | Msa0837870:intron | 35.0% | |
| !! | ATACTACCAGATTTTGATGC+AGG | - | chr5_4:11984347-11984366 | Msa0837870:intron | 35.0% |
| TTCAAAAACTCCTGAAGTTG+AGG | - | chr5_4:11984493-11984512 | Msa0837870:intron | 35.0% | |
| ACCAAACTCATCAATTTCCA+TGG | - | chr5_4:11984689-11984708 | Msa0837870:intron | 35.0% | |
| CCAAACTCATCAATTTCCAT+GGG | - | chr5_4:11984690-11984709 | Msa0837870:intron | 35.0% | |
| CAAACTCATCAATTTCCATG+GGG | - | chr5_4:11984691-11984710 | Msa0837870:intron | 35.0% | |
| TTCCTTAATCTGTGTGCAAT+TGG | - | chr5_4:11985018-11985037 | Msa0837870:intron | 35.0% | |
| ! | GTTAACTTGGCAGATTACAT+TGG | - | chr5_4:11985154-11985173 | Msa0837870:CDS | 35.0% |
| AGAAACCGTTAATTCTCCTC+CGG | + | chr5_4:11981108-11981127 | None:intergenic | 40.0% | |
| TGAACATGAACAGTGCCTTT+CGG | + | chr5_4:11981203-11981222 | None:intergenic | 40.0% | |
| TGCTTCATTTGCTTTGATGG+TGG | - | chr5_4:11981263-11981282 | Msa0837870:intron | 40.0% | |
| !! | CTATTTTAGGGGTTGTCCTA+AGG | - | chr5_4:11981421-11981440 | Msa0837870:intron | 40.0% |
| TGGTTCTTGTCTTTGTTCTG+GGG | - | chr5_4:11981925-11981944 | Msa0837870:CDS | 40.0% | |
| ! | ATTGTTGCTGGTTGAGAAGA+TGG | - | chr5_4:11981967-11981986 | Msa0837870:CDS | 40.0% |
| GCTTGTGTATTTGATGTCTG+GGG | - | chr5_4:11982012-11982031 | Msa0837870:CDS | 40.0% | |
| CTTGTGTATTTGATGTCTGG+GGG | - | chr5_4:11982013-11982032 | Msa0837870:CDS | 40.0% | |
| TTGTGTATTTGATGTCTGGG+GGG | - | chr5_4:11982014-11982033 | Msa0837870:CDS | 40.0% | |
| GATCCCAAATTCCCAATACT+TGG | + | chr5_4:11982209-11982228 | None:intergenic | 40.0% | |
| ! | TATTGGGAATTTGGGATCCT+TGG | - | chr5_4:11982211-11982230 | Msa0837870:CDS | 40.0% |
| ! | ATTGGGAATTTGGGATCCTT+GGG | - | chr5_4:11982212-11982231 | Msa0837870:CDS | 40.0% |
| CAGCTTGTCAAAAATAGGGA+AGG | + | chr5_4:11982573-11982592 | None:intergenic | 40.0% | |
| TGTCCATATTCCTTGTGCAA+GGG | - | chr5_4:11982727-11982746 | Msa0837870:CDS | 40.0% | |
| ! | TTTTGTACATCCCTTGCACA+AGG | + | chr5_4:11982740-11982759 | None:intergenic | 40.0% |
| GTTAGTGTCAGAGGAAACAA+AGG | - | chr5_4:11982775-11982794 | Msa0837870:CDS | 40.0% | |
| AGAGGAAACAAAGGTTTGTG+CGG | - | chr5_4:11982784-11982803 | Msa0837870:CDS | 40.0% | |
| TGCCCAAGGAATTAAGGTAA+TGG | - | chr5_4:11982843-11982862 | Msa0837870:CDS | 40.0% | |
| TTCATGTATAAAGGGAGGGA+GGG | + | chr5_4:11982907-11982926 | None:intergenic | 40.0% | |
| TTTCATGTATAAAGGGAGGG+AGG | + | chr5_4:11982908-11982927 | None:intergenic | 40.0% | |
| !! | GTGTACTGGTTGTACTTGAA+AGG | - | chr5_4:11983027-11983046 | Msa0837870:CDS | 40.0% |
| TCCTTCGAGCTAAAAATCCT+TGG | - | chr5_4:11983076-11983095 | Msa0837870:CDS | 40.0% | |
| !!! | TCCAAGGATTTTTAGCTCGA+AGG | + | chr5_4:11983080-11983099 | None:intergenic | 40.0% |
| CGAGCTAAAAATCCTTGGAA+AGG | - | chr5_4:11983081-11983100 | Msa0837870:CDS | 40.0% | |
| ! | TTTAAGATGATGACGCTTCC+GGG | + | chr5_4:11983139-11983158 | None:intergenic | 40.0% |
| !! | CTTTAAGATGATGACGCTTC+CGG | + | chr5_4:11983140-11983159 | None:intergenic | 40.0% |
| ! | CTTAAAGTTGACACTGGTTG+TGG | - | chr5_4:11983153-11983172 | Msa0837870:CDS | 40.0% |
| ! | CCCTTAGCCTTCTTGTTTAT+AGG | + | chr5_4:11983213-11983232 | None:intergenic | 40.0% |
| AGAAGGCTAAGGGAAATGTT+TGG | - | chr5_4:11983220-11983239 | Msa0837870:CDS | 40.0% | |
| GAAGGCTAAGGGAAATGTTT+GGG | - | chr5_4:11983221-11983240 | Msa0837870:CDS | 40.0% | |
| ! | AAATGTTTGGGACAGTGTCT+TGG | - | chr5_4:11983233-11983252 | Msa0837870:CDS | 40.0% |
| CACAGCAACGACATACTAAA+AGG | + | chr5_4:11983495-11983514 | None:intergenic | 40.0% | |
| TCTCTCCAGATCTCAGAATA+TGG | - | chr5_4:11983538-11983557 | Msa0837870:CDS | 40.0% | |
| TCCAGATCTCAGAATATGGA+GGG | - | chr5_4:11983542-11983561 | Msa0837870:CDS | 40.0% | |
| ! | GAGCGGCAATGATACATTTT+GGG | + | chr5_4:11983625-11983644 | None:intergenic | 40.0% |
| ! | TGAGCGGCAATGATACATTT+TGG | + | chr5_4:11983626-11983645 | None:intergenic | 40.0% |
| CAACTGTGAACAACAGTCTT+TGG | - | chr5_4:11983644-11983663 | Msa0837870:CDS | 40.0% | |
| TTTGGGAGCCAATGTTACAT+TGG | - | chr5_4:11983662-11983681 | Msa0837870:intron | 40.0% | |
| ATTCATCTGTACCATTAGGG+GGG | + | chr5_4:11983800-11983819 | None:intergenic | 40.0% | |
| GATTCATCTGTACCATTAGG+GGG | + | chr5_4:11983801-11983820 | None:intergenic | 40.0% | |
| AATCTGTTAAGAGCAACGGA+GGG | - | chr5_4:11983817-11983836 | Msa0837870:intron | 40.0% | |
| CAGATGGGAATATCAGTGAT+GGG | - | chr5_4:11983871-11983890 | Msa0837870:intron | 40.0% | |
| !! | AATATCAGTGATGGGCAAAG+TGG | - | chr5_4:11983879-11983898 | Msa0837870:intron | 40.0% |
| TTCTCATCAAAGGCAGTTGA+AGG | + | chr5_4:11983981-11984000 | None:intergenic | 40.0% | |
| TGACAAACCTTCTGATGAAG+TGG | - | chr5_4:11984007-11984026 | Msa0837870:intron | 40.0% | |
| ! | ATGAAGTGGTGGAATGTCAT+GGG | - | chr5_4:11984021-11984040 | Msa0837870:intron | 40.0% |
| AATGGAAATGTGGGTTCCAA+TGG | - | chr5_4:11984065-11984084 | Msa0837870:intron | 40.0% | |
| ATGGAAATGTGGGTTCCAAT+GGG | - | chr5_4:11984066-11984085 | Msa0837870:intron | 40.0% | |
| TCACTTTGCCCACTATTACT+CGG | + | chr5_4:11984104-11984123 | None:intergenic | 40.0% | |
| ATCCGACATTGAAGAGAATC+CGG | - | chr5_4:11984133-11984152 | Msa0837870:intron | 40.0% | |
| CACATCAATATCCCACTCTT+CGG | + | chr5_4:11984288-11984307 | None:intergenic | 40.0% | |
| CCTTTACCTGCATCAAAATC+TGG | + | chr5_4:11984356-11984375 | None:intergenic | 40.0% | |
| !! | CCAGATTTTGATGCAGGTAA+AGG | - | chr5_4:11984353-11984372 | Msa0837870:intron | 40.0% |
| GGGTAAATGTAAATCACCTG+AGG | + | chr5_4:11984393-11984412 | None:intergenic | 40.0% | |
| !! | TTTGCTACAGTGGATTGAGA+GGG | + | chr5_4:11984413-11984432 | None:intergenic | 40.0% |
| !! | ATTTGCTACAGTGGATTGAG+AGG | + | chr5_4:11984414-11984433 | None:intergenic | 40.0% |
| ! | ATTTTACGCACCTCAACTTC+AGG | + | chr5_4:11984506-11984525 | None:intergenic | 40.0% |
| TTTACACAAGACCAATGGGT+GGG | + | chr5_4:11984569-11984588 | None:intergenic | 40.0% | |
| ! | TTTTACACAAGACCAATGGG+TGG | + | chr5_4:11984570-11984589 | None:intergenic | 40.0% |
| ! | TTTGGTTCCAGCAAATACCT+GGG | + | chr5_4:11984675-11984694 | None:intergenic | 40.0% |
| CCCATGGAAATTGATGAGTT+TGG | + | chr5_4:11984693-11984712 | None:intergenic | 40.0% | |
| TAGAGAAACAACTTACGAGG+TGG | + | chr5_4:11984718-11984737 | None:intergenic | 40.0% | |
| AGGTAGAGAAACAACTTACG+AGG | + | chr5_4:11984721-11984740 | None:intergenic | 40.0% | |
| AGCCAATTGCACACAGATTA+AGG | + | chr5_4:11985023-11985042 | None:intergenic | 40.0% | |
| CATTACTTCCTCGACAATGA+AGG | + | chr5_4:11985291-11985310 | None:intergenic | 40.0% | |
| CTTCATTGTCGAGGAAGTAA+TGG | - | chr5_4:11985289-11985308 | Msa0837870:exon | 40.0% | |
| !! | GGTTTTGATCTGAGTGGACA+CGG | + | chr5_4:11980939-11980958 | None:intergenic | 45.0% |
| AACCCTAAAAATTGGGGACG+CGG | + | chr5_4:11980964-11980983 | None:intergenic | 45.0% | |
| ! | GGAATTACCGGTTGCTGAAT+CGG | + | chr5_4:11981068-11981087 | None:intergenic | 45.0% |
| GGAATTGGAGGTGGAATTAC+CGG | + | chr5_4:11981080-11981099 | None:intergenic | 45.0% | |
| GGTAATTCCACCTCCAATTC+CGG | - | chr5_4:11981079-11981098 | Msa0837870:three_prime_UTR | 45.0% | |
| CACTGTTCATGTTCATGCTC+CGG | - | chr5_4:11981208-11981227 | Msa0837870:intron | 45.0% | |
| TTGTCCTAAGGCGTATCATC+CGG | - | chr5_4:11981433-11981452 | Msa0837870:intron | 45.0% | |
| TCATCTCGTTTAACACACGC+CGG | + | chr5_4:11981455-11981474 | None:intergenic | 45.0% | |
| GGTTCTTGTCTTTGTTCTGG+GGG | - | chr5_4:11981926-11981945 | Msa0837870:CDS | 45.0% | |
| TCAACCAGCAACAATTTCGC+CGG | + | chr5_4:11981962-11981981 | None:intergenic | 45.0% | |
| CCAAATTCCCAATACTTGGC+CGG | + | chr5_4:11982205-11982224 | None:intergenic | 45.0% | |
| !! | CGGCCAAGTATTGGGAATTT+GGG | - | chr5_4:11982203-11982222 | Msa0837870:CDS | 45.0% |
| ! | TTGGGAATTTGGGATCCTTG+GGG | - | chr5_4:11982213-11982232 | Msa0837870:CDS | 45.0% |
| ! | ATCCTTGGGGGTACAAAAAC+AGG | - | chr5_4:11982226-11982245 | Msa0837870:CDS | 45.0% |
| !!! | TTCCTGTTTTTGTACCCCCA+AGG | + | chr5_4:11982231-11982250 | None:intergenic | 45.0% |
| TGGCATCTATGTAGCGATTG+TGG | - | chr5_4:11982676-11982695 | Msa0837870:CDS | 45.0% | |
| GACAGGTATAGCACATGTAG+TGG | + | chr5_4:11982711-11982730 | None:intergenic | 45.0% | |
| CTTGCACAAGGAATATGGAC+AGG | + | chr5_4:11982728-11982747 | None:intergenic | 45.0% | |
| CTGTCCATATTCCTTGTGCA+AGG | - | chr5_4:11982726-11982745 | Msa0837870:CDS | 45.0% | |
| CATCCCTTGCACAAGGAATA+TGG | + | chr5_4:11982733-11982752 | None:intergenic | 45.0% | |
| GAACAGTGCCCAAGGAATTA+AGG | - | chr5_4:11982837-11982856 | Msa0837870:CDS | 45.0% | |
| TCATGTATAAAGGGAGGGAG+GGG | + | chr5_4:11982906-11982925 | None:intergenic | 45.0% | |
| !!! | CAGCTGGGAGTATCTTTTCA+AGG | - | chr5_4:11983005-11983024 | Msa0837870:CDS | 45.0% |
| ! | TTAAGATGATGACGCTTCCG+GGG | + | chr5_4:11983138-11983157 | None:intergenic | 45.0% |
| ! | CACATTTAGCTCACAGGTAG+TGG | + | chr5_4:11983289-11983308 | None:intergenic | 45.0% |
| !! | ATCAATGATGGCACTGATGC+AGG | - | chr5_4:11983354-11983373 | Msa0837870:intron | 45.0% |
| !! | TCAATGATGGCACTGATGCA+GGG | - | chr5_4:11983355-11983374 | Msa0837870:intron | 45.0% |
| GTTTCAAGACTAGGAGAGTC+TGG | - | chr5_4:11983378-11983397 | Msa0837870:intron | 45.0% | |
| TCATCGTTGCTTCACTCTAC+AGG | - | chr5_4:11983417-11983436 | Msa0837870:intron | 45.0% | |
| CATCGTTGCTTCACTCTACA+GGG | - | chr5_4:11983418-11983437 | Msa0837870:intron | 45.0% | |
| TGGCATTATCAGGATCCAAC+TGG | - | chr5_4:11983456-11983475 | Msa0837870:intron | 45.0% | |
| GGCATTATCAGGATCCAACT+GGG | - | chr5_4:11983457-11983476 | Msa0837870:intron | 45.0% | |
| TTATCAGGATCCAACTGGGA+AGG | - | chr5_4:11983461-11983480 | Msa0837870:intron | 45.0% | |
| ! | TCGTTGCTGTGCAAGTTGAA+AGG | - | chr5_4:11983504-11983523 | Msa0837870:CDS | 45.0% |
| CTCCAGATCTCAGAATATGG+AGG | - | chr5_4:11983541-11983560 | Msa0837870:CDS | 45.0% | |
| !! | ACCCTCCATATTCTGAGATC+TGG | + | chr5_4:11983546-11983565 | None:intergenic | 45.0% |
| GACTGTTGTTCACAGTTGAG+CGG | + | chr5_4:11983642-11983661 | None:intergenic | 45.0% | |
| ! | TAGTCAGGATGGTCTTAGCA+AGG | - | chr5_4:11983698-11983717 | Msa0837870:intron | 45.0% |
| ! | ATGGTCTTAGCAAGGCAACA+AGG | - | chr5_4:11983706-11983725 | Msa0837870:intron | 45.0% |
| TTCATCTGTACCATTAGGGG+GGG | + | chr5_4:11983799-11983818 | None:intergenic | 45.0% | |
| GAATCTGTTAAGAGCAACGG+AGG | - | chr5_4:11983816-11983835 | Msa0837870:intron | 45.0% | |
| TGTGTAGTCACACTAGGAGA+CGG | + | chr5_4:11983849-11983868 | None:intergenic | 45.0% | |
| TCTGCTTGTGTAGTCACACT+AGG | + | chr5_4:11983855-11983874 | None:intergenic | 45.0% | |
| AGTGTGACTACACAAGCAGA+TGG | - | chr5_4:11983855-11983874 | Msa0837870:intron | 45.0% | |
| GTGTGACTACACAAGCAGAT+GGG | - | chr5_4:11983856-11983875 | Msa0837870:intron | 45.0% | |
| GCAGATGGGAATATCAGTGA+TGG | - | chr5_4:11983870-11983889 | Msa0837870:intron | 45.0% | |
| CAAACCTTCTGATGAAGTGG+TGG | - | chr5_4:11984010-11984029 | Msa0837870:intron | 45.0% | |
| CATTCCACCACTTCATCAGA+AGG | + | chr5_4:11984017-11984036 | None:intergenic | 45.0% | |
| ! | GATGAAGTGGTGGAATGTCA+TGG | - | chr5_4:11984020-11984039 | Msa0837870:intron | 45.0% |
| TCCGACATTGAAGAGAATCC+GGG | - | chr5_4:11984134-11984153 | Msa0837870:intron | 45.0% | |
| TTCTGGTCAGAACTGGATGA+TGG | - | chr5_4:11984163-11984182 | Msa0837870:intron | 45.0% | |
| ATCAATATCCCACTCTTCGG+CGG | + | chr5_4:11984285-11984304 | None:intergenic | 45.0% | |
| ! | TGCACATCTGCTTGCTGAAA+CGG | + | chr5_4:11984443-11984462 | None:intergenic | 45.0% |
| TTCCAGCAAATACCTGGGAA+AGG | + | chr5_4:11984670-11984689 | None:intergenic | 45.0% | |
| ! | GTTTGGTTCCAGCAAATACC+TGG | + | chr5_4:11984676-11984695 | None:intergenic | 45.0% |
| ! | GAGGGAGTATAATCGTTGCT+AGG | - | chr5_4:11985070-11985089 | Msa0837870:CDS | 45.0% |
| ACTTCCTCGACAATGAAGGA+AGG | + | chr5_4:11985287-11985306 | None:intergenic | 45.0% | |
| CTAAAAATTGGGGACGCGGT+GGG | + | chr5_4:11980960-11980979 | None:intergenic | 50.0% | |
| ! | CACCGCGTCCCCAATTTTTA+GGG | - | chr5_4:11980959-11980978 | Msa0837870:three_prime_UTR | 50.0% |
| ! | TTACCGGTTGCTGAATCGGT+GGG | + | chr5_4:11981064-11981083 | None:intergenic | 50.0% |
| ! | ATTACCGGTTGCTGAATCGG+TGG | + | chr5_4:11981065-11981084 | None:intergenic | 50.0% |
| GTTAATTCTCCTCCGGTGAC+CGG | + | chr5_4:11981101-11981120 | None:intergenic | 50.0% | |
| GGTCACCGGAGGAGAATTAA+CGG | - | chr5_4:11981100-11981119 | Msa0837870:three_prime_UTR | 50.0% | |
| !! | GTAGCGTTGACTCGGATCAT+CGG | + | chr5_4:11981140-11981159 | None:intergenic | 50.0% |
| ACATGAACAGTGCCTTTCGG+CGG | + | chr5_4:11981200-11981219 | None:intergenic | 50.0% | |
| TCCTTCGGCTTCTTCACAAC+CGG | + | chr5_4:11981230-11981249 | None:intergenic | 50.0% | |
| TGAACCGGCGAAATTGTTGC+TGG | - | chr5_4:11981955-11981974 | Msa0837870:CDS | 50.0% | |
| TATTTGATGTCTGGGGGGCT+TGG | - | chr5_4:11982019-11982038 | Msa0837870:CDS | 50.0% | |
| ! | GGGCTTGGTTTCCCTTCATT+AGG | - | chr5_4:11982034-11982053 | Msa0837870:CDS | 50.0% |
| ! | CTTCATGTTTGGTGAGGGTC+CGG | - | chr5_4:11982183-11982202 | Msa0837870:CDS | 50.0% |
| !! | CCGGCCAAGTATTGGGAATT+TGG | - | chr5_4:11982202-11982221 | Msa0837870:CDS | 50.0% |
| ! | TGGGAATTTGGGATCCTTGG+GGG | - | chr5_4:11982214-11982233 | Msa0837870:CDS | 50.0% |
| CGCTACATAGATGCCAACCT+AGG | + | chr5_4:11982672-11982691 | None:intergenic | 50.0% | |
| GTTGCAAGGTTCAAACTCCC+CGG | - | chr5_4:11983118-11983137 | Msa0837870:CDS | 50.0% | |
| ! | GTTTGGGACAGTGTCTTGGA+CGG | - | chr5_4:11983237-11983256 | Msa0837870:CDS | 50.0% |
| !! | CAATGATGGCACTGATGCAG+GGG | - | chr5_4:11983356-11983375 | Msa0837870:intron | 50.0% |
| GATGCAGGGGTTTCAAGACT+AGG | - | chr5_4:11983369-11983388 | Msa0837870:intron | 50.0% | |
| GTTGCTTCACTCTACAGGGA+TGG | - | chr5_4:11983422-11983441 | Msa0837870:intron | 50.0% | |
| ACAGCCAGTCTGGCATTATC+AGG | - | chr5_4:11983446-11983465 | Msa0837870:intron | 50.0% | |
| ! | GGATCCTGATAATGCCAGAC+TGG | + | chr5_4:11983453-11983472 | None:intergenic | 50.0% |
| GATCCAACTGGGAAGGTTCA+TGG | - | chr5_4:11983468-11983487 | Msa0837870:intron | 50.0% | |
| CAAGCAGAGCGAGGAAGAAA+AGG | - | chr5_4:11983758-11983777 | Msa0837870:intron | 50.0% | |
| CAGAGCGAGGAAGAAAAGGT+GGG | - | chr5_4:11983762-11983781 | Msa0837870:intron | 50.0% | |
| GATACTTGTACCCCCCCTAA+TGG | - | chr5_4:11983786-11983805 | Msa0837870:intron | 50.0% | |
| AGGTAGTGCAAGGTGTACGT+CGG | + | chr5_4:11983961-11983980 | None:intergenic | 50.0% | |
| AGGCAGTTGAAGGTAGTGCA+AGG | + | chr5_4:11983971-11983990 | None:intergenic | 50.0% | |
| GGTTCCAATGGGTCTTCTGA+GGG | - | chr5_4:11984077-11984096 | Msa0837870:intron | 50.0% | |
| TCTGAGGGTCCGAGTAATAG+TGG | - | chr5_4:11984092-11984111 | Msa0837870:intron | 50.0% | |
| CTGAGGGTCCGAGTAATAGT+GGG | - | chr5_4:11984093-11984112 | Msa0837870:intron | 50.0% | |
| CCCCGGATTCTCTTCAATGT+CGG | + | chr5_4:11984138-11984157 | None:intergenic | 50.0% | |
| CCGACATTGAAGAGAATCCG+GGG | - | chr5_4:11984135-11984154 | Msa0837870:intron | 50.0% | |
| TTCTGACCAGAAGATTGCCC+CGG | + | chr5_4:11984155-11984174 | None:intergenic | 50.0% | |
| GGCAATCTTCTGGTCAGAAC+TGG | - | chr5_4:11984156-11984175 | Msa0837870:intron | 50.0% | |
| ! | TGGATGATGGCAGCACTCTT+TGG | - | chr5_4:11984176-11984195 | Msa0837870:intron | 50.0% |
| ! | TCTTTTGGATGCAGTAGCGG+CGG | - | chr5_4:11984232-11984251 | Msa0837870:intron | 50.0% |
| GGAGGAGAAACACAGTGTCA+CGG | - | chr5_4:11984253-11984272 | Msa0837870:intron | 50.0% | |
| ! | CGGTTGCTCATTTGCTACAG+TGG | + | chr5_4:11984423-11984442 | None:intergenic | 50.0% |
| CTGAAAACCATCCCACCCAT+TGG | - | chr5_4:11984555-11984574 | Msa0837870:intron | 50.0% | |
| CTCCTTTCCCAGGTATTTGC+TGG | - | chr5_4:11984665-11984684 | Msa0837870:intron | 50.0% | |
| CGACAATGAAGGAAGGTGAG+AGG | + | chr5_4:11985280-11985299 | None:intergenic | 50.0% | |
| CTCACCTTCCTTCATTGTCG+AGG | - | chr5_4:11985280-11985299 | Msa0837870:exon | 50.0% | |
| !! | GCGGTGGGTTTTGATCTGAG+TGG | + | chr5_4:11980945-11980964 | None:intergenic | 55.0% |
| CCTAAAAATTGGGGACGCGG+TGG | + | chr5_4:11980961-11980980 | None:intergenic | 55.0% | |
| ! | CCACCGCGTCCCCAATTTTT+AGG | - | chr5_4:11980958-11980977 | Msa0837870:three_prime_UTR | 55.0% |
| GTGGCGGTGAGTAAGAAACG+CGG | - | chr5_4:11981170-11981189 | Msa0837870:intron | 55.0% | |
| TCCGGTTGTGAAGAAGCCGA+AGG | - | chr5_4:11981226-11981245 | Msa0837870:intron | 55.0% | |
| ! | TTCTGGGGGCTGAACTGAAC+CGG | - | chr5_4:11981940-11981959 | Msa0837870:CDS | 55.0% |
| CAAGGAGTGGCGCTTGTAAC+CGG | - | chr5_4:11982097-11982116 | Msa0837870:CDS | 55.0% | |
| AAGGAGTGGCGCTTGTAACC+GGG | - | chr5_4:11982098-11982117 | Msa0837870:CDS | 55.0% | |
| TGAGGGTCCGGCCAAGTATT+GGG | - | chr5_4:11982195-11982214 | Msa0837870:CDS | 55.0% | |
| GTTTGTGCGGAGCATGCTTG+AGG | - | chr5_4:11982797-11982816 | Msa0837870:CDS | 55.0% | |
| CTGATCGAGAACAGTGCCCA+AGG | - | chr5_4:11982829-11982848 | Msa0837870:CDS | 55.0% | |
| GCACGAACAGCACCTTTCCA+AGG | + | chr5_4:11983096-11983115 | None:intergenic | 55.0% | |
| TGCTGTTCGTGCGAGTTGCA+AGG | - | chr5_4:11983104-11983123 | Msa0837870:CDS | 55.0% | |
| GACAGTGTCTTGGACGGTGT+TGG | - | chr5_4:11983243-11983262 | Msa0837870:CDS | 55.0% | |
| ! | AGTGTCTTGGACGGTGTTGG+AGG | - | chr5_4:11983246-11983265 | Msa0837870:CDS | 55.0% |
| GGACCATGAACCTTCCCAGT+TGG | + | chr5_4:11983474-11983493 | None:intergenic | 55.0% | |
| CCTCGCTCTGCTTGACAATC+TGG | + | chr5_4:11983752-11983771 | None:intergenic | 55.0% | |
| CCAGATTGTCAAGCAGAGCG+AGG | - | chr5_4:11983749-11983768 | Msa0837870:intron | 55.0% | |
| GCAGAGCGAGGAAGAAAAGG+TGG | - | chr5_4:11983761-11983780 | Msa0837870:intron | 55.0% | |
| GGTAGTGCAAGGTGTACGTC+GGG | + | chr5_4:11983960-11983979 | None:intergenic | 55.0% | |
| GGGTTCCAATGGGTCTTCTG+AGG | - | chr5_4:11984076-11984095 | Msa0837870:intron | 55.0% | |
| GAGAATCCGGGGCAATCTTC+TGG | - | chr5_4:11984146-11984165 | Msa0837870:intron | 55.0% | |
| ATATCCCACTCTTCGGCGGA+AGG | + | chr5_4:11984281-11984300 | None:intergenic | 55.0% | |
| CACAAGACCAATGGGTGGGA+TGG | + | chr5_4:11984565-11984584 | None:intergenic | 55.0% | |
| TATGTGCAGGCTCCTTTCCC+AGG | - | chr5_4:11984655-11984674 | Msa0837870:intron | 55.0% | |
| AACTTACGAGGTGGACCCCA+TGG | + | chr5_4:11984709-11984728 | None:intergenic | 55.0% | |
| !! | CCACCCACCGATTCAGCAAC+CGG | - | chr5_4:11981058-11981077 | Msa0837870:three_prime_UTR | 60.0% |
| CCACCTCCAATTCCGGTCAC+CGG | - | chr5_4:11981086-11981105 | Msa0837870:three_prime_UTR | 60.0% | |
| TCTCCTCCGGTGACCGGAAT+TGG | + | chr5_4:11981095-11981114 | None:intergenic | 60.0% | |
| !! | CAGCGTCGGTAGCGTTGACT+CGG | + | chr5_4:11981148-11981167 | None:intergenic | 60.0% |
| CACGCCGGATGATACGCCTT+AGG | + | chr5_4:11981440-11981459 | None:intergenic | 60.0% | |
| AGGAGTGGCGCTTGTAACCG+GGG | - | chr5_4:11982099-11982118 | Msa0837870:CDS | 60.0% | |
| GTGAGGGTCCGGCCAAGTAT+TGG | - | chr5_4:11982194-11982213 | Msa0837870:CDS | 60.0% | |
| CAGGGATGGAACAGCCAGTC+TGG | - | chr5_4:11983436-11983455 | Msa0837870:intron | 60.0% | |
| CGGACCCTCAGAAGACCCAT+TGG | + | chr5_4:11984084-11984103 | None:intergenic | 60.0% | |
| TTTGGATGCAGTAGCGGCGG+AGG | - | chr5_4:11984235-11984254 | Msa0837870:intron | 60.0% | |
| GGAACCTTCCGCCGAAGAGT+GGG | - | chr5_4:11984274-11984293 | Msa0837870:intron | 60.0% | |
| ! | GGTGATGCTCTGAGCTCCTC+AGG | - | chr5_4:11984374-11984393 | Msa0837870:intron | 60.0% |
| CCGGTTGCTGAATCGGTGGG+TGG | + | chr5_4:11981061-11981080 | None:intergenic | 65.0% | |
| CCGGTGACCGGAATTGGAGG+TGG | + | chr5_4:11981089-11981108 | None:intergenic | 65.0% | |
| CCTCCGGTGACCGGAATTGG+AGG | + | chr5_4:11981092-11981111 | None:intergenic | 65.0% | |
| CCTCCAATTCCGGTCACCGG+AGG | - | chr5_4:11981089-11981108 | Msa0837870:three_prime_UTR | 65.0% | |
| CAACGCTACCGACGCTGACG+TGG | - | chr5_4:11981151-11981170 | Msa0837870:three_prime_UTR | 65.0% | |
| ACTCACCGCCACGTCAGCGT+CGG | + | chr5_4:11981162-11981181 | None:intergenic | 65.0% | |
| AAACGCGGTCGTCCGCCGAA+AGG | - | chr5_4:11981185-11981204 | Msa0837870:intron | 65.0% | |
| GGAGTGGCGCTTGTAACCGG+GGG | - | chr5_4:11982100-11982119 | Msa0837870:CDS | 65.0% | |
| GCGCTTGTAACCGGGGGAGT+GGG | - | chr5_4:11982106-11982125 | Msa0837870:CDS | 65.0% | |
| CGCTTGTAACCGGGGGAGTG+GGG | - | chr5_4:11982107-11982126 | Msa0837870:CDS | 65.0% | |
| GCTTGTAACCGGGGGAGTGG+GGG | - | chr5_4:11982108-11982127 | Msa0837870:CDS | 65.0% | |
| CGGAACCTTCCGCCGAAGAG+TGG | - | chr5_4:11984273-11984292 | Msa0837870:intron | 65.0% | |
| CGCTACCGACGCTGACGTGG+CGG | - | chr5_4:11981154-11981173 | Msa0837870:three_prime_UTR | 70.0% | |
| GGCGCTTGTAACCGGGGGAG+TGG | - | chr5_4:11982105-11982124 | Msa0837870:CDS | 70.0% | |
| GGATACAGCCCCCACTCCCC+CGG | + | chr5_4:11982119-11982138 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 11980904 | 11985434 | 11980904 | ID=Msa0837870;Name=Msa0837870 |
| chr5_4 | mRNA | 11980904 | 11985434 | 11980904 | ID=Msa0837870-mRNA-1;Parent=Msa0837870;Name=Msa0837870-mRNA-1;_AED=0.05;_eAED=0.05;_QI=140|1|1|1|0.4|0.66|6|276|709 |
| chr5_4 | exon | 11980904 | 11981184 | 11980904 | ID=Msa0837870-mRNA-1:exon:5246;Parent=Msa0837870-mRNA-1 |
| chr5_4 | exon | 11981617 | 11981674 | 11981617 | ID=Msa0837870-mRNA-1:exon:5245;Parent=Msa0837870-mRNA-1 |
| chr5_4 | exon | 11981824 | 11983359 | 11981824 | ID=Msa0837870-mRNA-1:exon:5244;Parent=Msa0837870-mRNA-1 |
| chr5_4 | exon | 11983480 | 11983664 | 11983480 | ID=Msa0837870-mRNA-1:exon:5243;Parent=Msa0837870-mRNA-1 |
| chr5_4 | exon | 11984829 | 11984908 | 11984829 | ID=Msa0837870-mRNA-1:exon:5242;Parent=Msa0837870-mRNA-1 |
| chr5_4 | exon | 11985029 | 11985434 | 11985029 | ID=Msa0837870-mRNA-1:exon:5241;Parent=Msa0837870-mRNA-1 |
| chr5_4 | five_prime_UTR | 11985295 | 11985434 | 11985295 | ID=Msa0837870-mRNA-1:five_prime_utr;Parent=Msa0837870-mRNA-1 |
| chr5_4 | CDS | 11985029 | 11985294 | 11985029 | ID=Msa0837870-mRNA-1:cds;Parent=Msa0837870-mRNA-1 |
| chr5_4 | CDS | 11984829 | 11984908 | 11984829 | ID=Msa0837870-mRNA-1:cds;Parent=Msa0837870-mRNA-1 |
| chr5_4 | CDS | 11983480 | 11983664 | 11983480 | ID=Msa0837870-mRNA-1:cds;Parent=Msa0837870-mRNA-1 |
| chr5_4 | CDS | 11981824 | 11983359 | 11981824 | ID=Msa0837870-mRNA-1:cds;Parent=Msa0837870-mRNA-1 |
| chr5_4 | CDS | 11981617 | 11981674 | 11981617 | ID=Msa0837870-mRNA-1:cds;Parent=Msa0837870-mRNA-1 |
| chr5_4 | CDS | 11981180 | 11981184 | 11981180 | ID=Msa0837870-mRNA-1:cds;Parent=Msa0837870-mRNA-1 |
| chr5_4 | three_prime_UTR | 11980904 | 11981179 | 11980904 | ID=Msa0837870-mRNA-1:three_prime_utr;Parent=Msa0837870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
