AlfalfaGEDB | Msa0837870

M. sativa cultivar zhongmu-4 / Msa0837870

KEGG: -
GO: -
PFAM: PF02213.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0837870	XP_003612115.1	95.628	709	29	1	1	709	1	707	0.0	1363

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0837870	sp\|Q9SD34\|C3H44_ARATH	51.948	231	95	6	10	229	44	269	2.79e-67	244
Msa0837870	sp\|Q9SD34\|C3H44_ARATH	47.436	78	38	1	324	398	703	780	2.84e-13	77.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0837870	G7KGD1	95.628	709	29	1	1	709	1	707	0.0	1363

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0015670	Msa0837870	0.811728	6.056357e-51	-8.615850e-47
Msa0045550	Msa0837870	0.810176	1.312925e-50	-8.615850e-47
Msa0045910	Msa0837870	0.803091	4.112156e-49	-8.615850e-47
Msa0051050	Msa0837870	0.835599	1.527549e-56	-8.615850e-47
Msa0092410	Msa0837870	0.801657	8.119870e-49	-8.615850e-47
Msa0101240	Msa0837870	0.841637	4.211838e-58	-8.615850e-47
Msa0136630	Msa0837870	0.807875	4.082848e-50	-8.615850e-47
Msa0187830	Msa0837870	0.825998	3.451447e-54	-8.615850e-47
Msa0194010	Msa0837870	0.807652	4.552770e-50	-8.615850e-47
Msa0235880	Msa0837870	0.822229	2.648935e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0837870	MtrunA17_Chr5g0405031	95.628	709	29	1	1	709	1	707	0.0	1363
Msa0837870	MtrunA17_Chr5g0405071	65.665	233	72	5	33	262	60	287	3.14e-96	310
Msa0837870	MtrunA17_Chr5g0405061	40.936	513	201	11	242	696	15	483	5.94e-86	283
Msa0837870	MtrunA17_Chr3g0145201	55.941	202	76	3	46	246	214	403	4.02e-68	241
Msa0837870	MtrunA17_Chr3g0109671	38.462	130	77	2	65	192	9	137	1.09e-24	100
Msa0837870	MtrunA17_Chr7g0274551	48.515	101	51	1	70	170	25	124	1.53e-24	100
Msa0837870	MtrunA17_Chr3g0109641	36.184	152	90	3	71	218	15	163	8.70e-23	103
Msa0837870	MtrunA17_Chr3g0145231	60.000	60	23	1	116	175	4	62	9.61e-23	92.8
Msa0837870	MtrunA17_Chr3g0109631	35.526	152	91	3	71	218	15	163	1.30e-22	102
Msa0837870	MtrunA17_Chr3g0109611	36.842	152	89	3	71	218	15	163	1.67e-22	102

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0837870	AT2G18090.2	60.000	175	67	2	62	234	70	243	9.60e-72	249
Msa0837870	AT2G18090.2	40.625	96	46	3	336	426	458	547	5.26e-12	69.7
Msa0837870	AT2G18090.1	60.000	175	67	2	62	234	70	243	1.42e-71	249
Msa0837870	AT2G18090.1	55.769	52	23	0	336	387	458	509	2.10e-11	67.8
Msa0837870	AT3G51120.1	51.948	231	95	6	10	229	44	269	2.24e-68	244
Msa0837870	AT3G51120.1	47.436	78	38	1	324	398	716	793	2.57e-14	77.8
Msa0837870	AT2G16485.2	54.190	179	79	3	70	247	598	774	5.87e-58	214
Msa0837870	AT2G16485.2	50.909	55	27	0	334	388	1292	1346	1.47e-11	68.9
Msa0837870	AT2G16485.1	54.190	179	79	3	70	247	598	774	6.01e-58	214
Msa0837870	AT2G16485.1	50.909	55	27	0	334	388	1307	1361	1.59e-11	68.6

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Find 202 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAATGTTGTTATAAAC+AGG	0.366748	5_4:+11981073	None:intergenic
AAACGCGGTCGTCCGCCGAA+AGG	0.610043	5_4:-11985131	Msa0837870:CDS
AAATAGTCCTATAAACAAGA+AGG	0.573367	5_4:-11983113	Msa0837870:CDS
AAATGTGAAATTTCTTGTCA+TGG	0.555258	5_4:-11982386	Msa0837870:CDS
AAATGTTTGGGACAGTGTCT+TGG	0.472814	5_4:-11983083	Msa0837870:CDS
AACTGTGAACAACAGTCTTT+GGG	0.383075	5_4:-11982671	Msa0837870:CDS
AACTTACGAGGTGGACCCCA+TGG	0.535838	5_4:+11981610	None:intergenic
AATAAAGAAAATAGTCAGGA+TGG	0.574172	5_4:-11982629	Msa0837870:CDS
AATATCAGTGATGGGCAAAG+TGG	0.641070	5_4:-11982437	Msa0837870:CDS
AATCTGTTAAGAGCAACGGA+GGG	0.752755	5_4:-11982499	Msa0837870:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAGAGAAACCCTAAAAATT+GGG	+	chr5_4:11980971-11980990	None:intergenic	30.0%
ATTTCCATTTCTCAGCTAAA+CGG	+	chr5_4:11981487-11981506	None:intergenic	30.0%
CTAAATTCATGCCTAATGAA+GGG	+	chr5_4:11982048-11982067	None:intergenic	30.0%
ACTAAATTCATGCCTAATGA+AGG	+	chr5_4:11982049-11982068	None:intergenic	30.0%
ATGGAAATTGTTGAAGATCA+AGG	-	chr5_4:11982079-11982098	Msa0837870:CDS	30.0%
GTGTCAAAGATGTACTAATT+TGG	-	chr5_4:11982332-11982351	Msa0837870:CDS	30.0%
CAAAGATGTACTAATTTGGA+AGG	-	chr5_4:11982336-11982355	Msa0837870:CDS	30.0%
TACAATAGATTTCTCATGCA+TGG	-	chr5_4:11982411-11982430	Msa0837870:CDS	30.0%
AAACATGTGGATAAATGTCT+TGG	-	chr5_4:11982454-11982473	Msa0837870:CDS	30.0%
ATAAATGTCTTGGATTATGC+AGG	-	chr5_4:11982464-11982483	Msa0837870:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	11980904	11985434	11980904	ID=Msa0837870;Name=Msa0837870
chr5_4	mRNA	11980904	11985434	11980904	ID=Msa0837870-mRNA-1;Parent=Msa0837870;Name=Msa0837870-mRNA-1;_AED=0.05;_eAED=0.05;_QI=140\|1\|1\|1\|0.4\|0.66\|6\|276\|709
chr5_4	exon	11980904	11981184	11980904	ID=Msa0837870-mRNA-1:exon:5246;Parent=Msa0837870-mRNA-1
chr5_4	exon	11981617	11981674	11981617	ID=Msa0837870-mRNA-1:exon:5245;Parent=Msa0837870-mRNA-1
chr5_4	exon	11981824	11983359	11981824	ID=Msa0837870-mRNA-1:exon:5244;Parent=Msa0837870-mRNA-1
chr5_4	exon	11983480	11983664	11983480	ID=Msa0837870-mRNA-1:exon:5243;Parent=Msa0837870-mRNA-1
chr5_4	exon	11984829	11984908	11984829	ID=Msa0837870-mRNA-1:exon:5242;Parent=Msa0837870-mRNA-1
chr5_4	exon	11985029	11985434	11985029	ID=Msa0837870-mRNA-1:exon:5241;Parent=Msa0837870-mRNA-1
chr5_4	five_prime_UTR	11985295	11985434	11985295	ID=Msa0837870-mRNA-1:five_prime_utr;Parent=Msa0837870-mRNA-1
chr5_4	CDS	11985029	11985294	11985029	ID=Msa0837870-mRNA-1:cds;Parent=Msa0837870-mRNA-1
chr5_4	CDS	11984829	11984908	11984829	ID=Msa0837870-mRNA-1:cds;Parent=Msa0837870-mRNA-1
chr5_4	CDS	11983480	11983664	11983480	ID=Msa0837870-mRNA-1:cds;Parent=Msa0837870-mRNA-1
chr5_4	CDS	11981824	11983359	11981824	ID=Msa0837870-mRNA-1:cds;Parent=Msa0837870-mRNA-1
chr5_4	CDS	11981617	11981674	11981617	ID=Msa0837870-mRNA-1:cds;Parent=Msa0837870-mRNA-1
chr5_4	CDS	11981180	11981184	11981180	ID=Msa0837870-mRNA-1:cds;Parent=Msa0837870-mRNA-1
chr5_4	three_prime_UTR	11980904	11981179	11980904	ID=Msa0837870-mRNA-1:three_prime_utr;Parent=Msa0837870-mRNA-1

Gene Sequence

>Msa0837870

ATGGAACAAAATCACCACCCACCGATTCAGCAACCGGTAATTCCACCTCCAATTCCGGTCACCGGAGGAGAATTAACGGTTTCTGAACATACTCCGATGATCCGAGTCAACGCTACCGACGCTGACGTGGCGGTGAGTAAGAAACGCGGTCGTCCGCCGAAAGGCACTGTTCATGTTCATGCTCCGGTTGTGAAGAAGCCGAAGGATGAAGAAGATGTATGCTTCATTTGCTTTGATGGTGGTTCACTTGTTCTATGTGATCATCGGGGTTGTCCTAAGGCGTATCATCCGGCGTGTGTTAAACGAGATGAAGAGTTTTTCCGTTTAGCTGAGAAATGGAAATGTGGTTGGCATCTATGTAGCGATTGTGGCAAATCGTGCCACTACATGTGCTATACCTGTCCATATTCCTTGTGCAAGGGATGTACAAAACAAGAGTCTGATTTTGTTAGTGTCAGAGGAAACAAAGGTTTGTGCGGAGCATGCTTGAGGACTATAATGCTGATCGAGAACAGTGCCCAAGGAATTAAGTGCGAAGTGGATTTTGATGATAGAAGCAGCTGGGAGTATCTTTTCAAGGTGTACTGGTTGTACTTGAAAGGAAAACTATCTCTAAATTTTGATGAGATCCTTCGAGCTAAAAATCCTTGGAAAGGTGCTGTTCGTGCGAGTTGCAAGGTTCAAACTCCCCGGAAGCGTCATCATCTTAAAGTTGACACTGGTTGTGGTTCCGAGAATTCCTGTATAGTAGATTCAAATAGTCCTATAAACAAGAAGGCTAAGGGAAATGTTTGGGACAGTGTCTTGGACGGTGTTGGAGGCAATGCACAAGAACTTTCCACTACCTGTGAGCTAAATGTGAATACATGTACAATAAAGAACGAAATGAATACTAATGAATCGGCAATCAATGATGGCACTGATGCAGGGGTTTCAAGACTAGGAGAGTCTGGTGTTGCAGAAGACATTTCATCGTTGCTTCACTCTACAGGGATGGAACAGCCAGTCTGGCATTATCAGGATCCAACTGGGAAGGTTCATGGTCCTTTTAGTATGTCGTTGCTGTGCAAGTTGAAAGGAACTGAATATTTCTCTCCAGATCTCAGAATATGGAGGGTAGATGAGAAACAAGAGAACTCTATATTGTTATCTGATGCACTGAGTCTGAAGTGTTCCCAAAATGTATCATTGCCGCTCAACTGTGAACAACAGTCTTTGGGAGCCAATGTTACATTGGAAAATAAAGAAAATAGTCAGGATGGTCTTAGCAAGGCAACAAGGAGTGAAATTTGTGCTAACAACCAGATTGTCAAGCAGAGCGAGGAAGAAAAGGTGGGTGATACTTGTACCCCCCCTAATGGTACAGATGAATCTGTTAAGAGCAACGGAGGGTACACTCCGTCTCCTAGTGTGACTACACAAGCAGATGGGAATATCAGTGATGGGCAAAGTGGTTATTTTGAACGAAGGGAAGAGTCACCTAAATGTGAAATTTCTTGTCATGGTGGTCCCGACGTACACCTTGCACTACCTTCAACTGCCTTTGATGAGAATTTGAATGACAAACCTTCTGATGAAGTGGTGGAATGTCATGGGAATGATAAAAAATTGGAAGTGAATGGAAATGTGGGTTCCAATGGGTCTTCTGAGGGTCCGAGTAATAGTGGGCAAAGTGATCAGAAACAATCCGACATTGAAGAGAATCCGGGGCAATCTTCTGGTCAGAACTGGATGATGGCAGCACTCTTTGGCGATGATTTCCTAGTTGATGATTCAGTTTCAAATCTTTTGGATGCAGTAGCGGCGGAGGAGAAACACAGTGTCACGGAACCTTCCGCCGAAGAGTGGGATATTGATGTGTTCACTGATGGTGCTATAACTGATTGTTTACAAGGTATAATACTACCAGATTTTGATGCAGGTAAAGGTGATGCTCTGAGCTCCTCAGGTGATTTACATTTACCCTCTCAATCCACTGTAGCAAATGAGCAACCGTTTCAGCAAGCAGATGTGCATAATCAGCAAACTATATCTGGGGAACAATCTTCAAAAACTCCTGAAGTTGAGGCTCCTTTCCCAGGTATTTGCTGGAACCAAACTCATCAATTTCCATGGGGTCCACCTCGTTAA

Protein sequence

>Msa0837870

MEQNHHPPIQQPVIPPPIPVTGGELTVSEHTPMIRVNATDADVAVSKKRGRPPKGTVHVHAPVVKKPKDEEDVCFICFDGGSLVLCDHRGCPKAYHPACVKRDEEFFRLAEKWKCGWHLCSDCGKSCHYMCYTCPYSLCKGCTKQESDFVSVRGNKGLCGACLRTIMLIENSAQGIKCEVDFDDRSSWEYLFKVYWLYLKGKLSLNFDEILRAKNPWKGAVRASCKVQTPRKRHHLKVDTGCGSENSCIVDSNSPINKKAKGNVWDSVLDGVGGNAQELSTTCELNVNTCTIKNEMNTNESAINDGTDAGVSRLGESGVAEDISSLLHSTGMEQPVWHYQDPTGKVHGPFSMSLLCKLKGTEYFSPDLRIWRVDEKQENSILLSDALSLKCSQNVSLPLNCEQQSLGANVTLENKENSQDGLSKATRSEICANNQIVKQSEEEKVGDTCTPPNGTDESVKSNGGYTPSPSVTTQADGNISDGQSGYFERREESPKCEISCHGGPDVHLALPSTAFDENLNDKPSDEVVECHGNDKKLEVNGNVGSNGSSEGPSNSGQSDQKQSDIEENPGQSSGQNWMMAALFGDDFLVDDSVSNLLDAVAAEEKHSVTEPSAEEWDIDVFTDGAITDCLQGIILPDFDAGKGDALSSSGDLHLPSQSTVANEQPFQQADVHNQQTISGEQSSKTPEVEAPFPGICWNQTHQFPWGPPR*