Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848240 | XP_003626150.1 | 99.517 | 207 | 1 | 0 | 1 | 207 | 1 | 207 | 3.72e-148 | 420 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848240 | sp|P41129|RL132_BRANA | 85.922 | 206 | 29 | 0 | 2 | 207 | 1 | 206 | 3.45e-131 | 370 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848240 | G7KWF6 | 99.517 | 207 | 1 | 0 | 1 | 207 | 1 | 207 | 1.78e-148 | 420 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040220 | Msa0848240 | 0.818294 | 2.112613e-52 | -8.615850e-47 |
| Msa0087910 | Msa0848240 | 0.845045 | 5.186480e-59 | -8.615850e-47 |
| Msa0653060 | Msa0848240 | 0.823307 | 1.486250e-53 | -8.615850e-47 |
| Msa0184650 | Msa0848240 | 0.813872 | 2.053782e-51 | -8.615850e-47 |
| Msa0210360 | Msa0848240 | 0.802258 | 6.110846e-49 | -8.615850e-47 |
| Msa0222730 | Msa0848240 | 0.828733 | 7.630445e-55 | -8.615850e-47 |
| Msa0426250 | Msa0848240 | 0.800838 | 1.194231e-48 | -8.615850e-47 |
| Msa0312210 | Msa0848240 | 0.800832 | 1.197772e-48 | -8.615850e-47 |
| Msa0342850 | Msa0848240 | 0.823453 | 1.373882e-53 | -8.615850e-47 |
| Msa0848240 | Msa1079920 | 0.819119 | 1.372691e-52 | -8.615850e-47 |
| Msa0848240 | Msa1124850 | 0.849924 | 2.365293e-60 | -8.615850e-47 |
| Msa0848240 | Msa1128120 | 0.823483 | 1.351703e-53 | -8.615850e-47 |
| Msa0848240 | Msa1295170 | 0.806517 | 7.915485e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848240 | MtrunA17_Chr7g0271401 | 99.517 | 207 | 1 | 0 | 1 | 207 | 1 | 207 | 3.42e-152 | 420 |
| Msa0848240 | MtrunA17_Chr5g0409231 | 99.034 | 207 | 2 | 0 | 1 | 207 | 1 | 207 | 1.70e-151 | 418 |
| Msa0848240 | MtrunA17_Chr1g0155011 | 98.068 | 207 | 4 | 0 | 1 | 207 | 1 | 207 | 3.40e-150 | 415 |
| Msa0848240 | MtrunA17_Chr8g0369561 | 88.462 | 52 | 6 | 0 | 133 | 184 | 6 | 57 | 1.18e-27 | 99.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848240 | AT3G49010.3 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 2.92e-126 | 355 |
| Msa0848240 | AT3G49010.6 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 2.92e-126 | 355 |
| Msa0848240 | AT3G49010.1 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 2.92e-126 | 355 |
| Msa0848240 | AT3G49010.2 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 2.92e-126 | 355 |
| Msa0848240 | AT3G49010.7 | 87.435 | 191 | 24 | 0 | 2 | 192 | 1 | 191 | 2.92e-126 | 355 |
| Msa0848240 | AT3G49010.4 | 86.387 | 191 | 24 | 1 | 2 | 192 | 1 | 189 | 4.92e-123 | 347 |
| Msa0848240 | AT5G23900.1 | 85.484 | 186 | 27 | 0 | 2 | 187 | 1 | 186 | 1.74e-119 | 338 |
| Msa0848240 | AT3G48960.1 | 77.083 | 192 | 44 | 0 | 2 | 193 | 1 | 192 | 5.70e-109 | 311 |
| Msa0848240 | AT3G49010.5 | 61.257 | 191 | 21 | 1 | 2 | 192 | 1 | 138 | 4.17e-78 | 231 |
Find 81 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGTTTCATGTTGTATTTC+TGG | 0.038558 | 5_4:-32613551 | None:intergenic |
| ATCGATAAATTGATTCTTAA+AGG | 0.103511 | 5_4:-32612967 | None:intergenic |
| AGATGAAATGAAGGCATTTA+AGG | 0.173990 | 5_4:+32615137 | Msa0848240:CDS |
| CGTCTTCTTGTCTTTCTTGC+AGG | 0.232556 | 5_4:-32613322 | None:intergenic |
| TTTGTTGGTTTAACGCATTC+TGG | 0.260503 | 5_4:+32615403 | Msa0848240:three_prime_UTR |
| TAGTTTCATGTTGTATTTCT+GGG | 0.262590 | 5_4:-32613550 | None:intergenic |
| AATCTGAACTCGAGTTTCTT+AGG | 0.282264 | 5_4:+32615615 | Msa0848240:three_prime_UTR |
| TCGCCGCAAGAACCGATCTT+TGG | 0.321210 | 5_4:+32614790 | Msa0848240:CDS |
| TAACAATCATATGGGTGATT+AGG | 0.341825 | 5_4:-32615276 | None:intergenic |
| TTGACCTTGCGTGCACGTCT+TGG | 0.342253 | 5_4:-32614872 | None:intergenic |
| GCGAACAAACAAACGCCATT+TGG | 0.357834 | 5_4:+32615182 | Msa0848240:CDS |
| CGAACAAACAAACGCCATTT+GGG | 0.361720 | 5_4:+32615183 | Msa0848240:CDS |
| CTCAGCAGCCCTCTTCAGTC+TGG | 0.372652 | 5_4:-32615208 | None:intergenic |
| AGACAAGAAGTGAAAACTTC+AGG | 0.375704 | 5_4:+32615242 | Msa0848240:exon |
| CAGAAGATGATGGTTGAAAA+TGG | 0.383588 | 5_4:-32613003 | None:intergenic |
| TGACCTTGCGTGCACGTCTT+GGG | 0.387927 | 5_4:-32614871 | None:intergenic |
| TGGGTCTGTCCATGAACAAT+AGG | 0.402566 | 5_4:-32613531 | None:intergenic |
| CCTCTCAGGCCTATTGTTCA+TGG | 0.403035 | 5_4:+32613522 | Msa0848240:CDS |
| CTATGGCTATTCAAGTTTGT+TGG | 0.410404 | 5_4:+32615388 | Msa0848240:three_prime_UTR |
| AGAGGTCCAGCTGTAGGCCT+TGG | 0.411701 | 5_4:-32613504 | None:intergenic |
| AGAAATACAACATGAAACTA+AGG | 0.423714 | 5_4:+32613553 | Msa0848240:CDS |
| TCTTAAAGGAATGGGCCTAT+AGG | 0.426158 | 5_4:-32612953 | None:intergenic |
| CAACACAATCAAAACTTGTA+TGG | 0.437815 | 5_4:-32615679 | None:intergenic |
| GTAGCATTTGCTAGTTCCTC+AGG | 0.441712 | 5_4:-32615048 | None:intergenic |
| TAAATTGATTCTTAAAGGAA+TGG | 0.443017 | 5_4:-32612962 | None:intergenic |
| GAGAGGTACCTGCCTGAGGC+TGG | 0.445975 | 5_4:-32613046 | None:intergenic |
| GTATTGCAATAACAATCATA+TGG | 0.446700 | 5_4:-32615285 | None:intergenic |
| TGAAACTAAGGGCTGGTAAA+GGG | 0.455519 | 5_4:+32613565 | Msa0848240:CDS |
| AAATTGATTCTTAAAGGAAT+GGG | 0.455729 | 5_4:-32612961 | None:intergenic |
| TACCTGCCTGAGGCTGGATT+AGG | 0.457226 | 5_4:-32613040 | None:intergenic |
| TGCTTGCGGAAGTGTTCGTT+AGG | 0.460343 | 5_4:-32613265 | None:intergenic |
| TCTTCAGTCTGGCACCCAAA+TGG | 0.461938 | 5_4:-32615197 | None:intergenic |
| GGCCTACAGCTGGACCTCTC+AGG | 0.464622 | 5_4:+32613508 | Msa0848240:CDS |
| GTTCTCCCTTGAGGAGTTGA+AGG | 0.470278 | 5_4:+32613587 | Msa0848240:CDS |
| GATGGCTTCTCCCTCACAAT+TGG | 0.470493 | 5_4:-32615093 | None:intergenic |
| ATGAAACTAAGGGCTGGTAA+AGG | 0.484116 | 5_4:+32613564 | Msa0848240:CDS |
| TTCTTGTCTTTCTTGCAGGT+TGG | 0.486579 | 5_4:-32613318 | None:intergenic |
| GAGGGCTGCTGAGGCAGAGA+AGG | 0.488227 | 5_4:+32615218 | Msa0848240:CDS |
| TAAGATTACAGATGAAATGA+AGG | 0.490511 | 5_4:+32615128 | Msa0848240:CDS |
| GAGGTCCAGCTGTAGGCCTT+GGG | 0.492897 | 5_4:-32613503 | None:intergenic |
| CTTGCAGACCTTCCAAAGAT+CGG | 0.495670 | 5_4:-32614802 | None:intergenic |
| ATGGTTGAAAATGGAGACTA+GGG | 0.504549 | 5_4:-32612994 | None:intergenic |
| GCAAATGCTACACAGGTTCA+AGG | 0.515568 | 5_4:+32615060 | Msa0848240:CDS |
| CCTGCTCCTAATCCAGCCTC+AGG | 0.518295 | 5_4:+32613034 | Msa0848240:five_prime_UTR |
| CCTGAGGCTGGATTAGGAGC+AGG | 0.523984 | 5_4:-32613034 | None:intergenic |
| TCGACAGAAATGCCGATAGT+TGG | 0.527583 | 5_4:-32614764 | None:intergenic |
| CTCCTAATCCAGCCTCAGGC+AGG | 0.529795 | 5_4:+32613038 | Msa0848240:five_prime_UTR |
| AGAAAGACAAGAAGACGCTT+AGG | 0.531399 | 5_4:+32613328 | Msa0848240:CDS |
| TATTGCAATAACAATCATAT+GGG | 0.535333 | 5_4:-32615284 | None:intergenic |
| GATGGTTGAAAATGGAGACT+AGG | 0.535438 | 5_4:-32612995 | None:intergenic |
| TTCTTCAGCTCGTCAGAAGA+AGG | 0.537672 | 5_4:+32613467 | Msa0848240:intron |
| GGAGAAGCTGCAGAAGATGA+TGG | 0.546094 | 5_4:-32613013 | None:intergenic |
| CAGACTGAAGAGGGCTGCTG+AGG | 0.549159 | 5_4:+32615209 | Msa0848240:CDS |
| TGGTAAAGGGTTCTCCCTTG+AGG | 0.559974 | 5_4:+32613578 | Msa0848240:CDS |
| ACGAACACTTCCGCAAGCAT+TGG | 0.561260 | 5_4:+32613269 | Msa0848240:CDS |
| AAGACGTGCACGCAAGGTCA+AGG | 0.565249 | 5_4:+32614874 | Msa0848240:CDS |
| TACAACATGAAACTAAGGGC+TGG | 0.568361 | 5_4:+32613558 | Msa0848240:CDS |
| CTTCCCAAGACGTGCACGCA+AGG | 0.568390 | 5_4:+32614868 | Msa0848240:CDS |
| TTCATACTTACCAATTGTGA+GGG | 0.574179 | 5_4:+32615083 | Msa0848240:CDS |
| CGCAAGAACCGATCTTTGGA+AGG | 0.577563 | 5_4:+32614794 | Msa0848240:CDS |
| AACTGAGATTCATCTTGTCA+TGG | 0.580725 | 5_4:-32615638 | None:intergenic |
| GCTTGCGGAAGTGTTCGTTA+GGG | 0.583423 | 5_4:-32613264 | None:intergenic |
| GTCTGCAAGCCAACGTGCAG+AGG | 0.583501 | 5_4:+32614816 | Msa0848240:CDS |
| TCTTGGGAAGACTACCAACT+TGG | 0.587079 | 5_4:-32614855 | None:intergenic |
| GAAGACATACAAGGCCAAGT+TGG | 0.587284 | 5_4:+32614841 | Msa0848240:CDS |
| CTTCCAAAGATCGGTTCTTG+CGG | 0.587526 | 5_4:-32614793 | None:intergenic |
| CGGTGAGAGGTACCTGCCTG+AGG | 0.589669 | 5_4:-32613050 | None:intergenic |
| GTTCATACTTACCAATTGTG+AGG | 0.591073 | 5_4:+32615082 | Msa0848240:CDS |
| ATTTGGGTGCCAGACTGAAG+AGG | 0.592370 | 5_4:+32615199 | Msa0848240:CDS |
| GGCTGGTGATTCCACTCCTG+AGG | 0.595885 | 5_4:+32615032 | Msa0848240:intron |
| GAAATACAACATGAAACTAA+GGG | 0.596413 | 5_4:+32613554 | Msa0848240:CDS |
| ATCTTAACAAGCTCTACAGA+TGG | 0.608105 | 5_4:-32615111 | None:intergenic |
| TTTGGGTGCCAGACTGAAGA+GGG | 0.608247 | 5_4:+32615200 | Msa0848240:CDS |
| GGCAAAACTATGTCAAGACA+TGG | 0.612396 | 5_4:+32613290 | Msa0848240:CDS |
| ATTTGCTAGTTCCTCAGGAG+TGG | 0.614969 | 5_4:-32615043 | None:intergenic |
| TGTCTTCAGCCTCTGCACGT+TGG | 0.625495 | 5_4:-32614825 | None:intergenic |
| GGAACTAGCAAATGCTACAC+AGG | 0.641783 | 5_4:+32615053 | Msa0848240:CDS |
| GGCCTGAGAGGTCCAGCTGT+AGG | 0.645171 | 5_4:-32613510 | None:intergenic |
| CCATGAACAATAGGCCTGAG+AGG | 0.663723 | 5_4:-32613522 | None:intergenic |
| CATAGTTCACAAAATAACAA+CGG | 0.683289 | 5_4:-32615370 | None:intergenic |
| GCAGAGGCTGAAGACATACA+AGG | 0.685449 | 5_4:+32614832 | Msa0848240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTATAATAATATCATC+AGG | - | chr5_4:32613949-32613968 | None:intergenic | 10.0% |
| !! | AAAAAAAAACTCAATTAAAT+TGG | - | chr5_4:32614251-32614270 | None:intergenic | 10.0% |
| !!! | TTTAATTGAGTTTTTTTTTA+AGG | + | chr5_4:32614252-32614271 | Msa0848240:intron | 10.0% |
| !! | AATTAAACCTTTATGATTTA+TGG | + | chr5_4:32613184-32613203 | Msa0848240:intron | 15.0% |
| !!! | TTTTGATTTATTTGACATAA+TGG | + | chr5_4:32613435-32613454 | Msa0848240:intron | 15.0% |
| !!! | TTTGATTTATTTGACATAAT+GGG | + | chr5_4:32613436-32613455 | Msa0848240:intron | 15.0% |
| !! | AAGATATAATCTAATCTTAT+TGG | + | chr5_4:32613970-32613989 | Msa0848240:intron | 15.0% |
| !!! | AGTTATATGCTTTTAATATA+TGG | + | chr5_4:32614911-32614930 | Msa0848240:intron | 15.0% |
| !! | AAAAAACGTTAAATTCCTAT+AGG | + | chr5_4:32612938-32612957 | Msa0848240:five_prime_UTR | 20.0% |
| !!! | AAATTGATTCTTAAAGGAAT+GGG | - | chr5_4:32612964-32612983 | None:intergenic | 20.0% |
| !!! | TAAATTGATTCTTAAAGGAA+TGG | - | chr5_4:32612965-32612984 | None:intergenic | 20.0% |
| !!! | ATCGATAAATTGATTCTTAA+AGG | - | chr5_4:32612970-32612989 | None:intergenic | 20.0% |
| !! | CATAAAACCATAAATCATAA+AGG | - | chr5_4:32613194-32613213 | None:intergenic | 20.0% |
| !!! | CTTTATGATTTATGGTTTTA+TGG | + | chr5_4:32613192-32613211 | Msa0848240:intron | 20.0% |
| !!! | TTTTATGGTTGATTATTTGA+AGG | + | chr5_4:32613207-32613226 | Msa0848240:intron | 20.0% |
| !!! | TTTTAAGAGTATGTGATTAA+TGG | + | chr5_4:32613857-32613876 | Msa0848240:intron | 20.0% |
| !! | TAATCTTATTGGATAAAACT+TGG | + | chr5_4:32613981-32614000 | Msa0848240:intron | 20.0% |
| !! | AAATTAGACAGAATTGAATA+TGG | - | chr5_4:32614571-32614590 | None:intergenic | 20.0% |
| !!! | TTTCTTCTATTTTACAATGT+AGG | + | chr5_4:32614715-32614734 | Msa0848240:intron | 20.0% |
| !! | GCATTATTCTTAATTTCTTA+TGG | + | chr5_4:32614991-32615010 | Msa0848240:intron | 20.0% |
| !! | TATTGCAATAACAATCATAT+GGG | - | chr5_4:32615287-32615306 | None:intergenic | 20.0% |
| !!! | TTAGCATGTTTTATTTTCAT+TGG | + | chr5_4:32615431-32615450 | Msa0848240:three_prime_UTR | 20.0% |
| !!! | TTTTGATTGTGTTGTTTTAA+AGG | + | chr5_4:32615688-32615707 | Msa0848240:three_prime_UTR | 20.0% |
| ! | TTTGAAGGTAAGGTAAAAAA+TGG | + | chr5_4:32613222-32613241 | Msa0848240:intron | 25.0% |
| ! | TAGTTTCATGTTGTATTTCT+GGG | - | chr5_4:32613553-32613572 | None:intergenic | 25.0% |
| ! | TTAGTTTCATGTTGTATTTC+TGG | - | chr5_4:32613554-32613573 | None:intergenic | 25.0% |
| ! | AGAAATACAACATGAAACTA+AGG | + | chr5_4:32613553-32613572 | Msa0848240:CDS | 25.0% |
| ! | GAAATACAACATGAAACTAA+GGG | + | chr5_4:32613554-32613573 | Msa0848240:CDS | 25.0% |
| ! | AGCAATTCACTAAACTATAT+GGG | - | chr5_4:32613652-32613671 | None:intergenic | 25.0% |
| ! | TAGCAATTCACTAAACTATA+TGG | - | chr5_4:32613653-32613672 | None:intergenic | 25.0% |
| ! | AAATTGCAAGTCACTAAAAT+CGG | + | chr5_4:32613750-32613769 | Msa0848240:intron | 25.0% |
| ! | TTAGTAGCAATATCACTATA+TGG | + | chr5_4:32614034-32614053 | Msa0848240:intron | 25.0% |
| ! | ATAGATAAAAACACTCCATA+TGG | - | chr5_4:32614216-32614235 | None:intergenic | 25.0% |
| !!! | TATGGAGTGTTTTTATCTAT+AGG | + | chr5_4:32614216-32614235 | Msa0848240:intron | 25.0% |
| !!! | GAGTTTTTTTTTAAGGTCTA+TGG | + | chr5_4:32614259-32614278 | Msa0848240:intron | 25.0% |
| !!! | ACAACTAAAGTTGATTTTGA+TGG | - | chr5_4:32614377-32614396 | None:intergenic | 25.0% |
| !!! | TTTTACTTTACCTTTTTCGA+TGG | + | chr5_4:32614681-32614700 | Msa0848240:intron | 25.0% |
| ! | AAGAAATAAACCATCGAAAA+AGG | - | chr5_4:32614694-32614713 | None:intergenic | 25.0% |
| !! | TATGGCCTTTTTCTTAATTT+TGG | + | chr5_4:32614929-32614948 | Msa0848240:intron | 25.0% |
| ! | TGGTACCAAAATTAAGAAAA+AGG | - | chr5_4:32614937-32614956 | None:intergenic | 25.0% |
| ! | TAAGATTACAGATGAAATGA+AGG | + | chr5_4:32615128-32615147 | Msa0848240:CDS | 25.0% |
| ! | GTATTGCAATAACAATCATA+TGG | - | chr5_4:32615288-32615307 | None:intergenic | 25.0% |
| ! | CATAGTTCACAAAATAACAA+CGG | - | chr5_4:32615373-32615392 | None:intergenic | 25.0% |
| ATTGAGATTAGAACGTGTTA+GGG | - | chr5_4:32613078-32613097 | None:intergenic | 30.0% | |
| AATTGAGATTAGAACGTGTT+AGG | - | chr5_4:32613079-32613098 | None:intergenic | 30.0% | |
| TGGTTGATTATTTGAAGGTA+AGG | + | chr5_4:32613212-32613231 | Msa0848240:intron | 30.0% | |
| TGGGAAAATCAAAATCACAT+AGG | - | chr5_4:32613633-32613652 | None:intergenic | 30.0% | |
| CAAGCTCTATGTGAAATTAT+AGG | + | chr5_4:32613916-32613935 | Msa0848240:intron | 30.0% | |
| CAATATCACTATATGGAAAC+TGG | + | chr5_4:32614041-32614060 | Msa0848240:intron | 30.0% | |
| CAAACAGAAAAACACTCTAT+AGG | - | chr5_4:32614093-32614112 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTAAGGTCTATGGC+TGG | + | chr5_4:32614263-32614282 | Msa0848240:intron | 30.0% |
| AAGAAATCATGGATCATACA+AGG | - | chr5_4:32614457-32614476 | None:intergenic | 30.0% | |
| GTGTATAAGCAAAGAAATCA+TGG | - | chr5_4:32614468-32614487 | None:intergenic | 30.0% | |
| !! | ATAGTGTTTTCACTTTTCAG+TGG | - | chr5_4:32614492-32614511 | None:intergenic | 30.0% |
| AGATCACTACTGAGAATATT+CGG | - | chr5_4:32614545-32614564 | None:intergenic | 30.0% | |
| GATAAAAGAGTAAAAGACCT+TGG | + | chr5_4:32614603-32614622 | Msa0848240:intron | 30.0% | |
| TACAAATTTATCAGCAACGA+TGG | - | chr5_4:32614957-32614976 | None:intergenic | 30.0% | |
| CGTTGCTGATAAATTTGTAA+AGG | + | chr5_4:32614958-32614977 | Msa0848240:intron | 30.0% | |
| TTCATACTTACCAATTGTGA+GGG | + | chr5_4:32615083-32615102 | Msa0848240:CDS | 30.0% | |
| !! | AGATGAAATGAAGGCATTTA+AGG | + | chr5_4:32615137-32615156 | Msa0848240:CDS | 30.0% |
| TAACAATCATATGGGTGATT+AGG | - | chr5_4:32615279-32615298 | None:intergenic | 30.0% | |
| !!! | CGTTGTTATTTTGTGAACTA+TGG | + | chr5_4:32615371-32615390 | Msa0848240:three_prime_UTR | 30.0% |
| CAACACAATCAAAACTTGTA+TGG | - | chr5_4:32615682-32615701 | None:intergenic | 30.0% | |
| ATGGTTGAAAATGGAGACTA+GGG | - | chr5_4:32612997-32613016 | None:intergenic | 35.0% | |
| ! | CAGAAGATGATGGTTGAAAA+TGG | - | chr5_4:32613006-32613025 | None:intergenic | 35.0% |
| TTGAGATTAGAACGTGTTAG+GGG | - | chr5_4:32613077-32613096 | None:intergenic | 35.0% | |
| ! | TTTTACCTTCAACTCCTCAA+GGG | - | chr5_4:32613595-32613614 | None:intergenic | 35.0% |
| ! | ATTTTACCTTCAACTCCTCA+AGG | - | chr5_4:32613596-32613615 | None:intergenic | 35.0% |
| !!! | AAGTGGTTTTGATGCTCTTT+TGG | + | chr5_4:32613686-32613705 | Msa0848240:intron | 35.0% |
| CTGCAATCTACATCAATACA+TGG | + | chr5_4:32614127-32614146 | Msa0848240:intron | 35.0% | |
| TAAAAACACTCCATATGGAC+AGG | - | chr5_4:32614211-32614230 | None:intergenic | 35.0% | |
| AAATCATGGATCATACAAGG+AGG | - | chr5_4:32614454-32614473 | None:intergenic | 35.0% | |
| ! | TATTTTACAATGTAGGCTGC+AGG | + | chr5_4:32614722-32614741 | Msa0848240:intron | 35.0% |
| ! | ATAGTTGGAGCAAGCTTTTT+GGG | - | chr5_4:32614752-32614771 | None:intergenic | 35.0% |
| ! | AAAAAGCTTGCTCCAACTAT+CGG | + | chr5_4:32614752-32614771 | Msa0848240:CDS | 35.0% |
| CAGCCTGGAAATATAAAACA+GGG | - | chr5_4:32615017-32615036 | None:intergenic | 35.0% | |
| GTTCATACTTACCAATTGTG+AGG | + | chr5_4:32615082-32615101 | Msa0848240:CDS | 35.0% | |
| ATCTTAACAAGCTCTACAGA+TGG | - | chr5_4:32615114-32615133 | None:intergenic | 35.0% | |
| AGACAAGAAGTGAAAACTTC+AGG | + | chr5_4:32615242-32615261 | Msa0848240:exon | 35.0% | |
| ! | CTATGGCTATTCAAGTTTGT+TGG | + | chr5_4:32615388-32615407 | Msa0848240:three_prime_UTR | 35.0% |
| !! | TTTGTTGGTTTAACGCATTC+TGG | + | chr5_4:32615403-32615422 | Msa0848240:three_prime_UTR | 35.0% |
| AATCTGAACTCGAGTTTCTT+AGG | + | chr5_4:32615615-32615634 | Msa0848240:three_prime_UTR | 35.0% | |
| AACTGAGATTCATCTTGTCA+TGG | - | chr5_4:32615641-32615660 | None:intergenic | 35.0% | |
| TCTTAAAGGAATGGGCCTAT+AGG | - | chr5_4:32612956-32612975 | None:intergenic | 40.0% | |
| GATGGTTGAAAATGGAGACT+AGG | - | chr5_4:32612998-32613017 | None:intergenic | 40.0% | |
| !! | CATAGTTTTGCCAATGCTTG+CGG | - | chr5_4:32613282-32613301 | None:intergenic | 40.0% |
| GGCAAAACTATGTCAAGACA+TGG | + | chr5_4:32613290-32613309 | Msa0848240:CDS | 40.0% | |
| TTCTTGTCTTTCTTGCAGGT+TGG | - | chr5_4:32613321-32613340 | None:intergenic | 40.0% | |
| AGAAAGACAAGAAGACGCTT+AGG | + | chr5_4:32613328-32613347 | Msa0848240:CDS | 40.0% | |
| TACAACATGAAACTAAGGGC+TGG | + | chr5_4:32613558-32613577 | Msa0848240:CDS | 40.0% | |
| ! | ATGAAACTAAGGGCTGGTAA+AGG | + | chr5_4:32613564-32613583 | Msa0848240:CDS | 40.0% |
| ! | TGAAACTAAGGGCTGGTAAA+GGG | + | chr5_4:32613565-32613584 | Msa0848240:CDS | 40.0% |
| GCTACGCATTATCAGAAAAG+TGG | + | chr5_4:32613669-32613688 | Msa0848240:intron | 40.0% | |
| CATGTAAATGCGAAGACACA+GGG | - | chr5_4:32614011-32614030 | None:intergenic | 40.0% | |
| TATGGCTGGCATTAATCGTA+TGG | + | chr5_4:32614277-32614296 | Msa0848240:intron | 40.0% | |
| TTTAAGAACCCTGACCATCA+AGG | + | chr5_4:32614302-32614321 | Msa0848240:intron | 40.0% | |
| TACTAGATGCACTCAAACCA+AGG | - | chr5_4:32614623-32614642 | None:intergenic | 40.0% | |
| TGGTTTGAGTGCATCTAGTA+TGG | + | chr5_4:32614623-32614642 | Msa0848240:intron | 40.0% | |
| ! | GATAGTTGGAGCAAGCTTTT+TGG | - | chr5_4:32614753-32614772 | None:intergenic | 40.0% |
| ! | TGGCCCTGTTTTATATTTCC+AGG | + | chr5_4:32615011-32615030 | Msa0848240:intron | 40.0% |
| CCAGCCTGGAAATATAAAAC+AGG | - | chr5_4:32615018-32615037 | None:intergenic | 40.0% | |
| ! | CCTGTTTTATATTTCCAGGC+TGG | + | chr5_4:32615015-32615034 | Msa0848240:intron | 40.0% |
| CGAACAAACAAACGCCATTT+GGG | + | chr5_4:32615183-32615202 | Msa0848240:CDS | 40.0% | |
| GATTAGAACGTGTTAGGGGA+CGG | - | chr5_4:32613073-32613092 | None:intergenic | 45.0% | |
| CGTCTTCTTGTCTTTCTTGC+AGG | - | chr5_4:32613325-32613344 | None:intergenic | 45.0% | |
| TTCTTCAGCTCGTCAGAAGA+AGG | + | chr5_4:32613467-32613486 | Msa0848240:intron | 45.0% | |
| ! | AGGCAGTGAAGATTTTCCCA+AGG | + | chr5_4:32613487-32613506 | Msa0848240:CDS | 45.0% |
| TGGGTCTGTCCATGAACAAT+AGG | - | chr5_4:32613534-32613553 | None:intergenic | 45.0% | |
| CCATGTAAATGCGAAGACAC+AGG | - | chr5_4:32614012-32614031 | None:intergenic | 45.0% | |
| CCTGTGTCTTCGCATTTACA+TGG | + | chr5_4:32614009-32614028 | Msa0848240:intron | 45.0% | |
| ! | ACTTGACAACGGGTTTGTAC+AGG | - | chr5_4:32614182-32614201 | None:intergenic | 45.0% |
| !! | ACAGGTTGGTCACTTGACAA+CGG | - | chr5_4:32614193-32614212 | None:intergenic | 45.0% |
| AAGTGACCAACCTGTCCATA+TGG | + | chr5_4:32614198-32614217 | Msa0848240:intron | 45.0% | |
| AACACTCCATATGGACAGGT+TGG | - | chr5_4:32614207-32614226 | None:intergenic | 45.0% | |
| ACCATCAAGGTCTAGGTCTA+TGG | + | chr5_4:32614315-32614334 | Msa0848240:intron | 45.0% | |
| TCGACAGAAATGCCGATAGT+TGG | - | chr5_4:32614767-32614786 | None:intergenic | 45.0% | |
| ! | CTTCCAAAGATCGGTTCTTG+CGG | - | chr5_4:32614796-32614815 | None:intergenic | 45.0% |
| CTTGCAGACCTTCCAAAGAT+CGG | - | chr5_4:32614805-32614824 | None:intergenic | 45.0% | |
| GAAGACATACAAGGCCAAGT+TGG | + | chr5_4:32614841-32614860 | Msa0848240:CDS | 45.0% | |
| TCTTGGGAAGACTACCAACT+TGG | - | chr5_4:32614858-32614877 | None:intergenic | 45.0% | |
| ! | ATTTGCTAGTTCCTCAGGAG+TGG | - | chr5_4:32615046-32615065 | None:intergenic | 45.0% |
| ! | GTAGCATTTGCTAGTTCCTC+AGG | - | chr5_4:32615051-32615070 | None:intergenic | 45.0% |
| GGAACTAGCAAATGCTACAC+AGG | + | chr5_4:32615053-32615072 | Msa0848240:CDS | 45.0% | |
| GCAAATGCTACACAGGTTCA+AGG | + | chr5_4:32615060-32615079 | Msa0848240:CDS | 45.0% | |
| GCGAACAAACAAACGCCATT+TGG | + | chr5_4:32615182-32615201 | Msa0848240:CDS | 45.0% | |
| GGAGAAGCTGCAGAAGATGA+TGG | - | chr5_4:32613016-32613035 | None:intergenic | 50.0% | |
| !! | GCTTGCGGAAGTGTTCGTTA+GGG | - | chr5_4:32613267-32613286 | None:intergenic | 50.0% |
| !! | TGCTTGCGGAAGTGTTCGTT+AGG | - | chr5_4:32613268-32613287 | None:intergenic | 50.0% |
| ACGAACACTTCCGCAAGCAT+TGG | + | chr5_4:32613269-32613288 | Msa0848240:CDS | 50.0% | |
| ! | ATTTTCCCAAGGCCTACAGC+TGG | + | chr5_4:32613498-32613517 | Msa0848240:CDS | 50.0% |
| CCATGAACAATAGGCCTGAG+AGG | - | chr5_4:32613525-32613544 | None:intergenic | 50.0% | |
| CCTCTCAGGCCTATTGTTCA+TGG | + | chr5_4:32613522-32613541 | Msa0848240:CDS | 50.0% | |
| TGGTAAAGGGTTCTCCCTTG+AGG | + | chr5_4:32613578-32613597 | Msa0848240:CDS | 50.0% | |
| GTTCTCCCTTGAGGAGTTGA+AGG | + | chr5_4:32613587-32613606 | Msa0848240:CDS | 50.0% | |
| !! | CAGGTTGGTCACTTGACAAC+GGG | - | chr5_4:32614192-32614211 | None:intergenic | 50.0% |
| AACCCTGACCATCAAGGTCT+AGG | + | chr5_4:32614308-32614327 | Msa0848240:intron | 50.0% | |
| ! | GACCTAGACCTTGATGGTCA+GGG | - | chr5_4:32614313-32614332 | None:intergenic | 50.0% |
| ! | AGACCTAGACCTTGATGGTC+AGG | - | chr5_4:32614314-32614333 | None:intergenic | 50.0% |
| GCCATAGACCTAGACCTTGA+TGG | - | chr5_4:32614319-32614338 | None:intergenic | 50.0% | |
| TCAAGGTCTAGGTCTATGGC+TGG | + | chr5_4:32614319-32614338 | Msa0848240:intron | 50.0% | |
| CACCAATCTCCAATGTACGC+AGG | + | chr5_4:32614424-32614443 | Msa0848240:intron | 50.0% | |
| CACCTGCGTACATTGGAGAT+TGG | - | chr5_4:32614429-32614448 | None:intergenic | 50.0% | |
| CGCAAGAACCGATCTTTGGA+AGG | + | chr5_4:32614794-32614813 | Msa0848240:CDS | 50.0% | |
| GCAGAGGCTGAAGACATACA+AGG | + | chr5_4:32614832-32614851 | Msa0848240:CDS | 50.0% | |
| GATGGCTTCTCCCTCACAAT+TGG | - | chr5_4:32615096-32615115 | None:intergenic | 50.0% | |
| TCTTCAGTCTGGCACCCAAA+TGG | - | chr5_4:32615200-32615219 | None:intergenic | 50.0% | |
| ATTTGGGTGCCAGACTGAAG+AGG | + | chr5_4:32615199-32615218 | Msa0848240:CDS | 50.0% | |
| TTTGGGTGCCAGACTGAAGA+GGG | + | chr5_4:32615200-32615219 | Msa0848240:CDS | 50.0% | |
| TACCTGCCTGAGGCTGGATT+AGG | - | chr5_4:32613043-32613062 | None:intergenic | 55.0% | |
| GGAGGTTCACCTGCGTACAT+TGG | - | chr5_4:32614436-32614455 | None:intergenic | 55.0% | |
| TCGCCGCAAGAACCGATCTT+TGG | + | chr5_4:32614790-32614809 | Msa0848240:CDS | 55.0% | |
| TGTCTTCAGCCTCTGCACGT+TGG | - | chr5_4:32614828-32614847 | None:intergenic | 55.0% | |
| TGACCTTGCGTGCACGTCTT+GGG | - | chr5_4:32614874-32614893 | None:intergenic | 55.0% | |
| TTGACCTTGCGTGCACGTCT+TGG | - | chr5_4:32614875-32614894 | None:intergenic | 55.0% | |
| AAGACGTGCACGCAAGGTCA+AGG | + | chr5_4:32614874-32614893 | Msa0848240:CDS | 55.0% | |
| ! | CCTGAGGCTGGATTAGGAGC+AGG | - | chr5_4:32613037-32613056 | None:intergenic | 60.0% |
| CCTGCTCCTAATCCAGCCTC+AGG | + | chr5_4:32613034-32613053 | Msa0848240:five_prime_UTR | 60.0% | |
| CTCCTAATCCAGCCTCAGGC+AGG | + | chr5_4:32613038-32613057 | Msa0848240:five_prime_UTR | 60.0% | |
| ACGTGTTAGGGGACGGTGAG+AGG | - | chr5_4:32613066-32613085 | None:intergenic | 60.0% | |
| GAGGTCCAGCTGTAGGCCTT+GGG | - | chr5_4:32613506-32613525 | None:intergenic | 60.0% | |
| AGAGGTCCAGCTGTAGGCCT+TGG | - | chr5_4:32613507-32613526 | None:intergenic | 60.0% | |
| GTCTGCAAGCCAACGTGCAG+AGG | + | chr5_4:32614816-32614835 | Msa0848240:CDS | 60.0% | |
| CTTCCCAAGACGTGCACGCA+AGG | + | chr5_4:32614868-32614887 | Msa0848240:CDS | 60.0% | |
| CAGGAGTGGAATCACCAGCC+TGG | - | chr5_4:32615032-32615051 | None:intergenic | 60.0% | |
| GGCTGGTGATTCCACTCCTG+AGG | + | chr5_4:32615032-32615051 | Msa0848240:intron | 60.0% | |
| CTCAGCAGCCCTCTTCAGTC+TGG | - | chr5_4:32615211-32615230 | None:intergenic | 60.0% | |
| CAGACTGAAGAGGGCTGCTG+AGG | + | chr5_4:32615209-32615228 | Msa0848240:CDS | 60.0% | |
| !! | GAGAGGTACCTGCCTGAGGC+TGG | - | chr5_4:32613049-32613068 | None:intergenic | 65.0% |
| !! | CGGTGAGAGGTACCTGCCTG+AGG | - | chr5_4:32613053-32613072 | None:intergenic | 65.0% |
| GGCCTACAGCTGGACCTCTC+AGG | + | chr5_4:32613508-32613527 | Msa0848240:CDS | 65.0% | |
| GGCCTGAGAGGTCCAGCTGT+AGG | - | chr5_4:32613513-32613532 | None:intergenic | 65.0% | |
| GAGGGCTGCTGAGGCAGAGA+AGG | + | chr5_4:32615218-32615237 | Msa0848240:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 32612906 | 32615719 | 32612906 | ID=Msa0848240;Name=Msa0848240 |
| chr5_4 | mRNA | 32612906 | 32615719 | 32612906 | ID=Msa0848240-mRNA-1;Parent=Msa0848240;Name=Msa0848240-mRNA-1;_AED=0.19;_eAED=0.19;_QI=166|1|1|1|0.6|0.5|6|421|207 |
| chr5_4 | exon | 32612906 | 32613059 | 32612906 | ID=Msa0848240-mRNA-1:exon:11396;Parent=Msa0848240-mRNA-1 |
| chr5_4 | exon | 32613229 | 32613349 | 32613229 | ID=Msa0848240-mRNA-1:exon:11397;Parent=Msa0848240-mRNA-1 |
| chr5_4 | exon | 32613475 | 32613608 | 32613475 | ID=Msa0848240-mRNA-1:exon:11398;Parent=Msa0848240-mRNA-1 |
| chr5_4 | exon | 32614737 | 32614895 | 32614737 | ID=Msa0848240-mRNA-1:exon:11399;Parent=Msa0848240-mRNA-1 |
| chr5_4 | exon | 32615033 | 32615553 | 32615033 | ID=Msa0848240-mRNA-1:exon:11400;Parent=Msa0848240-mRNA-1 |
| chr5_4 | exon | 32615598 | 32615719 | 32615598 | ID=Msa0848240-mRNA-1:exon:11401;Parent=Msa0848240-mRNA-1 |
| chr5_4 | five_prime_UTR | 32612906 | 32613059 | 32612906 | ID=Msa0848240-mRNA-1:five_prime_utr;Parent=Msa0848240-mRNA-1 |
| chr5_4 | five_prime_UTR | 32613229 | 32613240 | 32613229 | ID=Msa0848240-mRNA-1:five_prime_utr;Parent=Msa0848240-mRNA-1 |
| chr5_4 | CDS | 32613241 | 32613349 | 32613241 | ID=Msa0848240-mRNA-1:cds;Parent=Msa0848240-mRNA-1 |
| chr5_4 | CDS | 32613475 | 32613608 | 32613475 | ID=Msa0848240-mRNA-1:cds;Parent=Msa0848240-mRNA-1 |
| chr5_4 | CDS | 32614737 | 32614895 | 32614737 | ID=Msa0848240-mRNA-1:cds;Parent=Msa0848240-mRNA-1 |
| chr5_4 | CDS | 32615033 | 32615254 | 32615033 | ID=Msa0848240-mRNA-1:cds;Parent=Msa0848240-mRNA-1 |
| chr5_4 | three_prime_UTR | 32615255 | 32615553 | 32615255 | ID=Msa0848240-mRNA-1:three_prime_utr;Parent=Msa0848240-mRNA-1 |
| chr5_4 | three_prime_UTR | 32615598 | 32615719 | 32615598 | ID=Msa0848240-mRNA-1:three_prime_utr;Parent=Msa0848240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
