Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0653060 | XP_013457002.1 | 100.000 | 248 | 0 | 0 | 1 | 248 | 1 | 248 | 5.63e-179 | 501 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0653060 | sp|Q9M3V8|RS6_ASPOF | 92.975 | 242 | 17 | 0 | 1 | 242 | 1 | 242 | 1.08e-165 | 461 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0653060 | I3S1W3 | 100.000 | 248 | 0 | 0 | 1 | 248 | 1 | 248 | 2.69e-179 | 501 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa0653060 | 0.800575 | 1.351428e-48 | -8.615850e-47 |
| Msa0016350 | Msa0653060 | 0.816425 | 5.567275e-52 | -8.615850e-47 |
| Msa0021290 | Msa0653060 | 0.804996 | 1.652110e-49 | -8.615850e-47 |
| Msa0021320 | Msa0653060 | 0.801680 | 8.033381e-49 | -8.615850e-47 |
| Msa0027590 | Msa0653060 | 0.838264 | 3.188007e-57 | -8.615850e-47 |
| Msa0040220 | Msa0653060 | 0.925143 | 2.734181e-90 | -8.615850e-47 |
| Msa0075350 | Msa0653060 | 0.829837 | 4.115948e-55 | -8.615850e-47 |
| Msa0087910 | Msa0653060 | 0.911534 | 5.451551e-83 | -8.615850e-47 |
| Msa0114570 | Msa0653060 | 0.800861 | 1.181570e-48 | -8.615850e-47 |
| Msa0602900 | Msa0653060 | 0.820423 | 6.914142e-53 | -8.615850e-47 |
| Msa0605890 | Msa0653060 | 0.805474 | 1.311654e-49 | -8.615850e-47 |
| Msa0619230 | Msa0653060 | 0.825384 | 4.827899e-54 | -8.615850e-47 |
| Msa0622230 | Msa0653060 | 0.800586 | 1.344256e-48 | -8.615850e-47 |
| Msa0643960 | Msa0653060 | 0.826083 | 3.295679e-54 | -8.615850e-47 |
| Msa0653060 | Msa0686550 | 0.813416 | 2.587586e-51 | -8.615850e-47 |
| Msa0653060 | Msa0694400 | 0.831831 | 1.335548e-55 | -8.615850e-47 |
| Msa0653060 | Msa0704860 | 0.803602 | 3.224158e-49 | -8.615850e-47 |
| Msa0653060 | Msa0705800 | 0.820415 | 6.941796e-53 | -8.615850e-47 |
| Msa0653060 | Msa0708630 | 0.832637 | 8.437427e-56 | -8.615850e-47 |
| Msa0653060 | Msa0717380 | 0.800369 | 1.488943e-48 | -8.615850e-47 |
| Msa0653060 | Msa0788380 | 0.852756 | 3.747073e-61 | -8.615850e-47 |
| Msa0653060 | Msa0790450 | 0.805119 | 1.556752e-49 | -8.615850e-47 |
| Msa0653060 | Msa0799830 | 0.823729 | 1.184144e-53 | -8.615850e-47 |
| Msa0653060 | Msa0848240 | 0.823307 | 1.486250e-53 | -8.615850e-47 |
| Msa0653060 | Msa0861320 | 0.857807 | 1.268746e-62 | -8.615850e-47 |
| Msa0653060 | Msa0915540 | 0.803471 | 3.432232e-49 | -8.615850e-47 |
| Msa0653060 | Msa0929700 | 0.841452 | 4.711569e-58 | -8.615850e-47 |
| Msa0653060 | Msa0930100 | 0.839405 | 1.615743e-57 | -8.615850e-47 |
| Msa0653060 | Msa1037290 | 0.824186 | 9.250627e-54 | -8.615850e-47 |
| Msa0653060 | Msa1040160 | 0.903830 | 2.310530e-79 | -8.615850e-47 |
| Msa0653060 | Msa1041680 | 0.846198 | 2.525567e-59 | -8.615850e-47 |
| Msa0653060 | Msa1050100 | 0.837020 | 6.647459e-57 | -8.615850e-47 |
| Msa0653060 | Msa1054280 | 0.824262 | 8.880077e-54 | -8.615850e-47 |
| Msa0653060 | Msa1078870 | 0.812879 | 3.395460e-51 | -8.615850e-47 |
| Msa0653060 | Msa1078980 | 0.834975 | 2.196546e-56 | -8.615850e-47 |
| Msa0653060 | Msa1082170 | 0.804662 | 1.939833e-49 | -8.615850e-47 |
| Msa0653060 | Msa1083370 | 0.907131 | 7.053289e-81 | -8.615850e-47 |
| Msa0653060 | Msa1096900 | 0.815666 | 8.225283e-52 | -8.615850e-47 |
| Msa0653060 | Msa1116940 | 0.824409 | 8.198040e-54 | -8.615850e-47 |
| Msa0653060 | Msa1124850 | 0.868354 | 6.949722e-66 | -8.615850e-47 |
| Msa0653060 | Msa1126690 | 0.825629 | 4.222637e-54 | -8.615850e-47 |
| Msa0653060 | Msa1128120 | 0.822223 | 2.657861e-53 | -8.615850e-47 |
| Msa0653060 | Msa1164150 | 0.821359 | 4.211504e-53 | -8.615850e-47 |
| Msa0653060 | Msa1165640 | 0.802318 | 5.938208e-49 | -8.615850e-47 |
| Msa0653060 | Msa1166570 | 0.847013 | 1.512955e-59 | -8.615850e-47 |
| Msa0653060 | Msa1167540 | 0.841325 | 5.089226e-58 | -8.615850e-47 |
| Msa0653060 | Msa1167550 | 0.818885 | 1.551823e-52 | -8.615850e-47 |
| Msa0653060 | Msa1169180 | 0.822165 | 2.741390e-53 | -8.615850e-47 |
| Msa0653060 | Msa1180000 | 0.821895 | 3.165376e-53 | -8.615850e-47 |
| Msa0653060 | Msa1186030 | 0.843771 | 1.141722e-58 | -8.615850e-47 |
| Msa0653060 | Msa1203560 | 0.833512 | 5.112420e-56 | -8.615850e-47 |
| Msa0653060 | Msa1218170 | 0.801584 | 8.404862e-49 | -8.615850e-47 |
| Msa0653060 | Msa1237040 | 0.858095 | 1.041904e-62 | -8.615850e-47 |
| Msa0653060 | Msa1240270 | 0.837553 | 4.857572e-57 | -8.615850e-47 |
| Msa0653060 | Msa1258460 | 0.801096 | 1.057630e-48 | -8.615850e-47 |
| Msa0653060 | Msa1258540 | 0.849223 | 3.711972e-60 | -8.615850e-47 |
| Msa0653060 | Msa1270640 | 0.813059 | 3.100432e-51 | -8.615850e-47 |
| Msa0653060 | Msa1270710 | 0.805049 | 1.610555e-49 | -8.615850e-47 |
| Msa0653060 | Msa1278130 | 0.849783 | 2.590121e-60 | -8.615850e-47 |
| Msa0653060 | Msa1284060 | 0.803297 | 3.728934e-49 | -8.615850e-47 |
| Msa0653060 | Msa1295150 | 0.810522 | 1.105356e-50 | -8.615850e-47 |
| Msa0653060 | Msa1295170 | 0.801328 | 9.482365e-49 | -8.615850e-47 |
| Msa0653060 | Msa1311400 | 0.862610 | 4.487504e-64 | -8.615850e-47 |
| Msa0653060 | Msa1317390 | 0.823066 | 1.691379e-53 | -8.615850e-47 |
| Msa0653060 | Msa1332250 | 0.808060 | 3.728274e-50 | -8.615850e-47 |
| Msa0653060 | Msa1341780 | 0.827112 | 1.872846e-54 | -8.615850e-47 |
| Msa0653060 | Msa1351020 | 0.817939 | 2.541813e-52 | -8.615850e-47 |
| Msa0653060 | Msa1368920 | 0.825074 | 5.715020e-54 | -8.615850e-47 |
| Msa0653060 | Msa1385480 | 0.813493 | 2.488891e-51 | -8.615850e-47 |
| Msa0653060 | Msa1390760 | 0.824151 | 9.428740e-54 | -8.615850e-47 |
| Msa0653060 | Msa1392590 | 0.819036 | 1.433784e-52 | -8.615850e-47 |
| Msa0653060 | Msa1397100 | 0.827267 | 1.719530e-54 | -8.615850e-47 |
| Msa0653060 | Msa1403910 | 0.825593 | 4.307657e-54 | -8.615850e-47 |
| Msa0653060 | Msa1410570 | 0.807905 | 4.022277e-50 | -8.615850e-47 |
| Msa0653060 | Msa1418770 | 0.814411 | 1.561577e-51 | -8.615850e-47 |
| Msa0653060 | Msa1424570 | 0.825850 | 3.743676e-54 | -8.615850e-47 |
| Msa0653060 | Msa1426120 | 0.827024 | 1.966052e-54 | -8.615850e-47 |
| Msa0653060 | Msa1449160 | 0.823396 | 1.416439e-53 | -8.615850e-47 |
| Msa0653060 | Msa1450560 | 0.810796 | 9.647588e-51 | -8.615850e-47 |
| Msa0653060 | Msa1463570 | 0.825842 | 3.759171e-54 | -8.615850e-47 |
| Msa0128330 | Msa0653060 | 0.829244 | 5.736984e-55 | -8.615850e-47 |
| Msa0132460 | Msa0653060 | 0.832514 | 9.053565e-56 | -8.615850e-47 |
| Msa0134580 | Msa0653060 | 0.893873 | 4.188253e-75 | -8.615850e-47 |
| Msa0144810 | Msa0653060 | 0.804076 | 2.569125e-49 | -8.615850e-47 |
| Msa0167860 | Msa0653060 | 0.809913 | 1.496021e-50 | -8.615850e-47 |
| Msa0174580 | Msa0653060 | 0.814585 | 1.429270e-51 | -8.615850e-47 |
| Msa0182050 | Msa0653060 | 0.832242 | 1.057298e-55 | -8.615850e-47 |
| Msa0186740 | Msa0653060 | 0.810819 | 9.533249e-51 | -8.615850e-47 |
| Msa0191450 | Msa0653060 | 0.872387 | 3.307818e-67 | -8.615850e-47 |
| Msa0191550 | Msa0653060 | 0.871020 | 9.389234e-67 | -8.615850e-47 |
| Msa0192300 | Msa0653060 | 0.826777 | 2.252120e-54 | -8.615850e-47 |
| Msa0194940 | Msa0653060 | 0.879892 | 8.596785e-70 | -8.615850e-47 |
| Msa0210330 | Msa0653060 | 0.828691 | 7.807944e-55 | -8.615850e-47 |
| Msa0210360 | Msa0653060 | 0.863597 | 2.222124e-64 | -8.615850e-47 |
| Msa0222730 | Msa0653060 | 0.856637 | 2.811411e-62 | -8.615850e-47 |
| Msa0228540 | Msa0653060 | 0.804549 | 2.048397e-49 | -8.615850e-47 |
| Msa0369410 | Msa0653060 | 0.864097 | 1.553422e-64 | -8.615850e-47 |
| Msa0426090 | Msa0653060 | 0.880062 | 7.477877e-70 | -8.615850e-47 |
| Msa0426250 | Msa0653060 | 0.891703 | 3.117609e-74 | -8.615850e-47 |
| Msa0463520 | Msa0653060 | 0.823109 | 1.652921e-53 | -8.615850e-47 |
| Msa0471880 | Msa0653060 | 0.830526 | 2.794373e-55 | -8.615850e-47 |
| Msa0472480 | Msa0653060 | 0.872709 | 2.581523e-67 | -8.615850e-47 |
| Msa0475810 | Msa0653060 | 0.921236 | 4.633648e-88 | -8.615850e-47 |
| Msa0481520 | Msa0653060 | 0.870168 | 1.789487e-66 | -8.615850e-47 |
| Msa0482560 | Msa0653060 | 0.818809 | 1.614394e-52 | -8.615850e-47 |
| Msa0277600 | Msa0653060 | 0.808098 | 3.659849e-50 | -8.615850e-47 |
| Msa0281370 | Msa0653060 | 0.818257 | 2.154633e-52 | -8.615850e-47 |
| Msa0297830 | Msa0653060 | 0.838788 | 2.334990e-57 | -8.615850e-47 |
| Msa0301220 | Msa0653060 | 0.839921 | 1.186793e-57 | -8.615850e-47 |
| Msa0301250 | Msa0653060 | 0.815541 | 8.768380e-52 | -8.615850e-47 |
| Msa0312210 | Msa0653060 | 0.820235 | 7.634201e-53 | -8.615850e-47 |
| Msa0313060 | Msa0653060 | 0.839363 | 1.657640e-57 | -8.615850e-47 |
| Msa0315430 | Msa0653060 | 0.843389 | 1.443999e-58 | -8.615850e-47 |
| Msa0335840 | Msa0653060 | 0.851166 | 1.059152e-60 | -8.615850e-47 |
| Msa0340560 | Msa0653060 | 0.823907 | 1.075425e-53 | -8.615850e-47 |
| Msa0342850 | Msa0653060 | 0.828942 | 6.791328e-55 | -8.615850e-47 |
| Msa0529900 | Msa0653060 | 0.869163 | 3.804992e-66 | -8.615850e-47 |
| Msa0540480 | Msa0653060 | 0.825452 | 4.652190e-54 | -8.615850e-47 |
| Msa0547920 | Msa0653060 | 0.833138 | 6.333450e-56 | -8.615850e-47 |
| Msa0557720 | Msa0653060 | 0.829170 | 5.980114e-55 | -8.615850e-47 |
| Msa0573550 | Msa0653060 | 0.854963 | 8.668798e-62 | -8.615850e-47 |
| Msa0582070 | Msa0653060 | 0.814564 | 1.444951e-51 | -8.615850e-47 |
| Msa0597240 | Msa0653060 | 0.832001 | 1.212485e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0653060 | MtrunA17_Chr4g0047021 | 100.000 | 248 | 0 | 0 | 1 | 248 | 1 | 248 | 0.0 | 501 |
| Msa0653060 | MtrunA17_Chr7g0234621 | 96.774 | 248 | 8 | 0 | 1 | 248 | 1 | 248 | 3.67e-177 | 486 |
| Msa0653060 | MtrunA17_Chr2g0282411 | 96.774 | 248 | 8 | 0 | 1 | 248 | 1 | 248 | 1.60e-176 | 485 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0653060 | AT5G10360.1 | 91.968 | 249 | 18 | 1 | 1 | 247 | 1 | 249 | 7.72e-165 | 456 |
| Msa0653060 | AT4G31700.1 | 91.600 | 250 | 19 | 1 | 1 | 248 | 1 | 250 | 1.39e-157 | 437 |
| Msa0653060 | AT5G10360.2 | 73.896 | 249 | 11 | 2 | 1 | 247 | 1 | 197 | 4.26e-120 | 340 |
| Msa0653060 | AT4G31700.2 | 90.957 | 188 | 15 | 1 | 63 | 248 | 1 | 188 | 2.69e-109 | 313 |
Find 97 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATATTGCAGCCGTGCTTTC+TGG | 0.027256 | 4_3:-60871589 | Msa0653060:intron |
| TTGCTCTCTGCAGGAGTTTA+AGG | 0.158668 | 4_3:-60871439 | Msa0653060:intron |
| GTTGAACAGCTTACGGATTT+TGG | 0.198177 | 4_3:+60870586 | None:intergenic |
| CAATTCTTGCTCGCTTCCTT+TGG | 0.278485 | 4_3:+60870052 | None:intergenic |
| GTGACCAATCGTTGTATCTT+TGG | 0.296066 | 4_3:+60870087 | None:intergenic |
| TCATTAGTCTTGTTCCTTGT+GGG | 0.308623 | 4_3:-60869823 | Msa0653060:three_prime_UTR |
| GGAAGTTCTTGGTGATGCTT+TGG | 0.339745 | 4_3:-60871549 | Msa0653060:CDS |
| AGGATTTCACAGGAAGTTCT+TGG | 0.345621 | 4_3:-60871560 | Msa0653060:CDS |
| ATATTGCAGCCGTGCTTTCT+GGG | 0.350681 | 4_3:-60871588 | Msa0653060:intron |
| TTCCCTCTGCTCCTTCAATC+TGG | 0.354522 | 4_3:+60869963 | None:intergenic |
| TTGAGTTTCATTTGAATTGA+AGG | 0.356962 | 4_3:-60869727 | Msa0653060:three_prime_UTR |
| TGGCTTAGCACTGGATAATC+TGG | 0.366469 | 4_3:+60869909 | None:intergenic |
| CTCTTAGGACCTCTCATCCT+TGG | 0.367925 | 4_3:+60870614 | None:intergenic |
| AAAGGTGATAATGATCTTCC+AGG | 0.375447 | 4_3:-60870656 | Msa0653060:CDS |
| GTCAACACTCCCTGCTTCAT+TGG | 0.384872 | 4_3:+60871372 | None:intergenic |
| CTGCTATGATTAACATGAAC+AGG | 0.389358 | 4_3:-60869624 | Msa0653060:three_prime_UTR |
| TGTTGACCCCTGGCCGTGTT+AGG | 0.390290 | 4_3:-60871356 | Msa0653060:CDS |
| GGCGCAATGGAGAGCGTAGA+AGG | 0.390771 | 4_3:-60870742 | Msa0653060:CDS |
| TGCTCTCTGCAGGAGTTTAA+GGG | 0.392051 | 4_3:-60871438 | Msa0653060:intron |
| TTAATCATAGCAGCTTATAA+TGG | 0.395312 | 4_3:+60869634 | None:intergenic |
| CACAAGAGAGTTTCCGCGGC+TGG | 0.413641 | 4_3:-60872428 | Msa0653060:five_prime_UTR |
| GAAGTTCTTGGTGATGCTTT+GGG | 0.420593 | 4_3:-60871548 | Msa0653060:CDS |
| TTCATTAGTCTTGTTCCTTG+TGG | 0.424279 | 4_3:-60869824 | Msa0653060:three_prime_UTR |
| CGCTTCCTTTGGAGTGTCAA+AGG | 0.447165 | 4_3:+60870063 | None:intergenic |
| TCAACACTCCCTGCTTCATT+GGG | 0.455023 | 4_3:+60871373 | None:intergenic |
| CTGACATCCAGTGGTTGGAT+TGG | 0.459762 | 4_3:+60872277 | None:intergenic |
| TTGACAGGTTGAACAGCTTA+CGG | 0.462619 | 4_3:+60870579 | None:intergenic |
| AGCAAGAGCCTAACACGGCC+AGG | 0.463109 | 4_3:+60871348 | None:intergenic |
| TTGTTTGATTGCAGGGAAGA+AGG | 0.475360 | 4_3:-60870121 | Msa0653060:intron |
| ACAAGGATTCCCAATGAAGC+AGG | 0.478682 | 4_3:-60871382 | Msa0653060:CDS |
| GCAGCTTACAGCTAGAGATA+TGG | 0.481546 | 4_3:-60869871 | Msa0653060:three_prime_UTR |
| TTCTTCTGACATCCAGTGGT+TGG | 0.481727 | 4_3:+60872272 | None:intergenic |
| AAGTTCAAAACAGAGAGGTC+GGG | 0.481755 | 4_3:+60870692 | None:intergenic |
| GCTGCTTATGCTGTGGCAGA+TGG | 0.483327 | 4_3:+60869889 | None:intergenic |
| GCACATCATCATCCTTTGAC+AGG | 0.490483 | 4_3:+60870564 | None:intergenic |
| ACTCCTTGCATCCAGATTGA+AGG | 0.490955 | 4_3:-60869974 | Msa0653060:CDS |
| AACTTGGTTATTGTGAAGAA+AGG | 0.498754 | 4_3:-60870674 | Msa0653060:CDS |
| AATCAGAAACTTACCATCCT+TGG | 0.507683 | 4_3:+60870505 | None:intergenic |
| AACGTTGCCAATCCAACCAC+TGG | 0.507932 | 4_3:-60872284 | Msa0653060:CDS |
| CTGGGACAAGAGGATTTCAC+AGG | 0.519001 | 4_3:-60871570 | Msa0653060:CDS |
| TTGAAAACAAACCTTCATGT+TGG | 0.522210 | 4_3:+60872388 | None:intergenic |
| GCAAGAGCCTAACACGGCCA+GGG | 0.526221 | 4_3:+60871349 | None:intergenic |
| GGTTATGTCTTCAAGATCAC+TGG | 0.529877 | 4_3:-60871417 | Msa0653060:CDS |
| AAGCTTCTTCTGACATCCAG+TGG | 0.530433 | 4_3:+60872268 | None:intergenic |
| GCCGTGCTTTCTGGGACAAG+AGG | 0.533262 | 4_3:-60871580 | Msa0653060:CDS |
| TATGTCTTCAAGATCACTGG+TGG | 0.541337 | 4_3:-60871414 | Msa0653060:CDS |
| AAGCAGGGAGTGTTGACCCC+TGG | 0.544754 | 4_3:-60871366 | Msa0653060:CDS |
| CTTCCGTGTCCACGGAAACA+AGG | 0.545510 | 4_3:+60870764 | None:intergenic |
| TTCTCAACATCAGTAAGCCC+TGG | 0.548857 | 4_3:+60870638 | None:intergenic |
| CAAGTTCAAAACAGAGAGGT+CGG | 0.553854 | 4_3:+60870691 | None:intergenic |
| GGAACGCCGAAGTGAGAGCT+TGG | 0.554466 | 4_3:-60869944 | Msa0653060:CDS |
| CTTGTTTCCGTGGACACGGA+AGG | 0.556226 | 4_3:-60870763 | Msa0653060:CDS |
| GCAGGAACTCCTTGTTTCCG+TGG | 0.557291 | 4_3:-60870773 | Msa0653060:intron |
| TCCTCTTGTCCCAGAAAGCA+CGG | 0.557747 | 4_3:+60871579 | None:intergenic |
| CAGAAACTTACCATCCTTGG+TGG | 0.557776 | 4_3:+60870508 | None:intergenic |
| CAAGAAGAAGAGAATTGCTA+AGG | 0.559648 | 4_3:-60870025 | Msa0653060:CDS |
| GCTCCTTCAATCTGGATGCA+AGG | 0.562477 | 4_3:+60869971 | None:intergenic |
| CGTGGACACGGAAGGCGCAA+TGG | 0.565614 | 4_3:-60870755 | Msa0653060:CDS |
| AGGACGAGATTCCAACATGA+AGG | 0.566551 | 4_3:-60872399 | Msa0653060:intron |
| ACTCCTTGTTTCCGTGGACA+CGG | 0.569669 | 4_3:-60870767 | Msa0653060:CDS |
| AGCTCCAAAGATACAACGAT+TGG | 0.570130 | 4_3:-60870091 | Msa0653060:CDS |
| ATAGCCAGTCTTGTTAAAAG+TGG | 0.573346 | 4_3:-60869472 | Msa0653060:three_prime_UTR |
| CGTAGAAGGAAGTCTGTTCG+TGG | 0.573391 | 4_3:-60870728 | Msa0653060:CDS |
| CCTTGGTGGTGAAAGTTCTA+CGG | 0.579080 | 4_3:+60870522 | None:intergenic |
| AGAACTTTCACCACCAAGGA+TGG | 0.589936 | 4_3:-60870518 | Msa0653060:intron |
| CATTGCGCCTTCCGTGTCCA+CGG | 0.591891 | 4_3:+60870756 | None:intergenic |
| TAAGCTGTTCAACCTGTCAA+AGG | 0.594543 | 4_3:-60870576 | Msa0653060:CDS |
| AGTTCAAAACAGAGAGGTCG+GGG | 0.595017 | 4_3:+60870693 | None:intergenic |
| TTACTGATGTTGAGAAGCCA+AGG | 0.596042 | 4_3:-60870631 | Msa0653060:CDS |
| TAGCTTGTAGAGGAATAAGT+AGG | 0.598780 | 4_3:-60869599 | Msa0653060:three_prime_UTR |
| GTTGAGAAGCCAAGGATGAG+AGG | 0.601224 | 4_3:-60870623 | Msa0653060:CDS |
| TGTGGCAGATGGCTTAGCAC+TGG | 0.603451 | 4_3:+60869900 | None:intergenic |
| ATCCAGATTGAAGGAGCAGA+GGG | 0.604009 | 4_3:-60869965 | Msa0653060:CDS |
| GTTTCCGCGGCTGGATCAAG+AGG | 0.604884 | 4_3:-60872419 | Msa0653060:five_prime_UTR |
| AAGGTGATAATGATCTTCCA+GGG | 0.607328 | 4_3:-60870655 | Msa0653060:CDS |
| GTTAGGCTCTTGCTCCATAG+AGG | 0.608724 | 4_3:-60871339 | Msa0653060:intron |
| TCTTAGCCAAGCTCTCACTT+CGG | 0.610174 | 4_3:+60869938 | None:intergenic |
| TCACTCCTTTGACACTCCAA+AGG | 0.610174 | 4_3:-60870068 | Msa0653060:CDS |
| GTGAGAGCTTGGCTAAGAAG+AGG | 0.611225 | 4_3:-60869933 | Msa0653060:CDS |
| CAAGAGCCTAACACGGCCAG+GGG | 0.618346 | 4_3:+60871350 | None:intergenic |
| ATGTCTTCAAGATCACTGGT+GGG | 0.622519 | 4_3:-60871413 | Msa0653060:CDS |
| GTGTGCGGCTTCAGCAACAA+TGG | 0.626284 | 4_3:+60872448 | None:intergenic |
| AATTGCTAAGGCAAAATCAG+AGG | 0.627856 | 4_3:-60870013 | Msa0653060:CDS |
| GGTGGTGAAAGTTCTACGGT+AGG | 0.627958 | 4_3:+60870526 | None:intergenic |
| CATCCAGATTGAAGGAGCAG+AGG | 0.633629 | 4_3:-60869966 | Msa0653060:CDS |
| CAAGGATTCCCAATGAAGCA+GGG | 0.635106 | 4_3:-60871381 | Msa0653060:CDS |
| ACTGGTGGGTGTGACAAACA+AGG | 0.636404 | 4_3:-60871399 | Msa0653060:CDS |
| CGCGGAAACTCTCTTGTGTG+CGG | 0.645005 | 4_3:+60872433 | None:intergenic |
| TGAACAGGTCTAGCTTGTAG+AGG | 0.649483 | 4_3:-60869609 | Msa0653060:three_prime_UTR |
| CGCACACAAGAGAGTTTCCG+CGG | 0.651647 | 4_3:-60872432 | Msa0653060:five_prime_UTR |
| GCTGTAAGCTGCTTATGCTG+TGG | 0.655143 | 4_3:+60869882 | None:intergenic |
| TTGATGTTATGTTTGCACAA+TGG | 0.655165 | 4_3:-60869677 | Msa0653060:three_prime_UTR |
| TCGTCCTCTTGATCCAGCCG+CGG | 0.656441 | 4_3:+60872415 | None:intergenic |
| GTTTATCATCAACACCCACA+AGG | 0.674409 | 4_3:+60869809 | None:intergenic |
| CCGTAGAACTTTCACCACCA+AGG | 0.691015 | 4_3:-60870522 | Msa0653060:CDS |
| TATGGAGCAAGAGCCTAACA+CGG | 0.710814 | 4_3:+60871343 | None:intergenic |
| TAACCAAGTTCAAAACAGAG+AGG | 0.738467 | 4_3:+60870687 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATATATCCTTATATTAA+GGG | - | chr4_3:60871452-60871471 | Msa0653060:intron | 10.0% |
| !!! | TTTTGAAATAATAAATGTTA+TGG | - | chr4_3:60872417-60872436 | Msa0653060:five_prime_UTR | 10.0% |
| !! | TATAAGGATATATAAAGAAA+TGG | + | chr4_3:60871448-60871467 | None:intergenic | 15.0% |
| !! | CTTTATATATCCTTATATTA+AGG | - | chr4_3:60871451-60871470 | Msa0653060:intron | 15.0% |
| !!! | TCATTTGAAGTATTTTTCTT+AGG | - | chr4_3:60869728-60869747 | Msa0653060:three_prime_UTR | 20.0% |
| !! | CAGAAAATTGAAAAGAATTT+CGG | + | chr4_3:60869822-60869841 | None:intergenic | 20.0% |
| !! | TAGCTTATGAAAATAGTTTA+TGG | - | chr4_3:60870075-60870094 | Msa0653060:CDS | 20.0% |
| !!! | TTAAGTTGTTTATCAAAACA+AGG | - | chr4_3:60870208-60870227 | Msa0653060:intron | 20.0% |
| !!! | TTTTTGTGAAGTTATTTATG+TGG | - | chr4_3:60870271-60870290 | Msa0653060:intron | 20.0% |
| !! | ACATGAGATAAATAGTAAAA+TGG | + | chr4_3:60870741-60870760 | None:intergenic | 20.0% |
| !! | AAGAATATTACTTTCATTGA+AGG | - | chr4_3:60871612-60871631 | Msa0653060:intron | 20.0% |
| !!! | TCAATATGTTTTGATATGCA+TGG | - | chr4_3:60869903-60869922 | Msa0653060:CDS | 25.0% |
| !! | CATTGTCATTTATCTGAATT+TGG | - | chr4_3:60869935-60869954 | Msa0653060:CDS | 25.0% |
| !!! | ATTTGGTTTGAACTGATATT+TGG | - | chr4_3:60869952-60869971 | Msa0653060:CDS | 25.0% |
| !! | ACTATTTTCATAAGCTATCT+TGG | + | chr4_3:60870072-60870091 | None:intergenic | 25.0% |
| !!! | TTTATTTTATCGTGTGTAGT+AGG | - | chr4_3:60870120-60870139 | Msa0653060:intron | 25.0% |
| ! | AAAAAAAAATGCTACCTCTA+TGG | + | chr4_3:60870590-60870609 | None:intergenic | 25.0% |
| ! | TCTTCAATCTATTTACCTTT+CGG | - | chr4_3:60870618-60870637 | Msa0653060:CDS | 25.0% |
| ! | CGTTCATAAATTTATAGTAG+TGG | - | chr4_3:60870692-60870711 | Msa0653060:CDS | 25.0% |
| ! | TCATAAATTTATAGTAGTGG+AGG | - | chr4_3:60870695-60870714 | Msa0653060:CDS | 25.0% |
| ! | GTTATCTCTAATATTACATG+TGG | + | chr4_3:60870823-60870842 | None:intergenic | 25.0% |
| !! | AGTTCTTTTCATAAAGTTAG+TGG | + | chr4_3:60870871-60870890 | None:intergenic | 25.0% |
| ! | TCATCCAAAACTATTTAACT+AGG | + | chr4_3:60870903-60870922 | None:intergenic | 25.0% |
| !!! | TTAAATAGTTTTGGATGAGT+GGG | - | chr4_3:60870905-60870924 | Msa0653060:intron | 25.0% |
| ! | AACAATAATCATTGTGATCA+TGG | + | chr4_3:60871009-60871028 | None:intergenic | 25.0% |
| ! | GCAAATAATGAAATACTAAG+TGG | + | chr4_3:60871068-60871087 | None:intergenic | 25.0% |
| ! | CTTAGTATTTCATTATTTGC+AGG | - | chr4_3:60871068-60871087 | Msa0653060:intron | 25.0% |
| ! | ATATATCCTTATATTAAGGG+TGG | - | chr4_3:60871455-60871474 | Msa0653060:intron | 25.0% |
| ! | AGAACAAAAATGAATACAAG+TGG | + | chr4_3:60871554-60871573 | None:intergenic | 25.0% |
| ! | TTCATTACAAATGTCTGTAT+TGG | + | chr4_3:60871753-60871772 | None:intergenic | 25.0% |
| ! | GTAATGAATTGTAATCTTAG+TGG | - | chr4_3:60871765-60871784 | Msa0653060:intron | 25.0% |
| ! | TTGAGTTTCATTTGAATTGA+AGG | - | chr4_3:60872185-60872204 | Msa0653060:intron | 25.0% |
| ! | TTAATCATAGCAGCTTATAA+TGG | + | chr4_3:60872281-60872300 | None:intergenic | 25.0% |
| TTGAAAACAAACCTTCATGT+TGG | + | chr4_3:60869527-60869546 | None:intergenic | 30.0% | |
| GAAAATGAAGAGAGAGTAAA+TGG | + | chr4_3:60869701-60869720 | None:intergenic | 30.0% | |
| CCAACATAGATTTATGAACA+TGG | + | chr4_3:60869778-60869797 | None:intergenic | 30.0% | |
| CCATGTTCATAAATCTATGT+TGG | - | chr4_3:60869775-60869794 | Msa0653060:three_prime_UTR | 30.0% | |
| ATATGACTGTAGTGTAAATC+TGG | - | chr4_3:60869871-60869890 | Msa0653060:three_prime_UTR | 30.0% | |
| ! | TGTAGAAATAAGTTGGAAAC+AGG | + | chr4_3:60870043-60870062 | None:intergenic | 30.0% |
| GTGAACTTGTAGAAATAAGT+TGG | + | chr4_3:60870050-60870069 | None:intergenic | 30.0% | |
| TTACGATGCTCTACAAAATA+AGG | + | chr4_3:60870430-60870449 | None:intergenic | 30.0% | |
| TTGCCTCTTAGTATTACTAT+CGG | - | chr4_3:60870666-60870685 | Msa0653060:CDS | 30.0% | |
| ! | TATCTCATGTGATTTTGCAT+TGG | - | chr4_3:60870751-60870770 | Msa0653060:CDS | 30.0% |
| ! | GTGATTTTGCATTGGATTAT+TGG | - | chr4_3:60870759-60870778 | Msa0653060:CDS | 30.0% |
| ! | GCATATGTAGTTATTTCAGT+AGG | - | chr4_3:60870789-60870808 | Msa0653060:intron | 30.0% |
| CCAAAACTATTTAACTAGGA+GGG | + | chr4_3:60870899-60870918 | None:intergenic | 30.0% | |
| TCCAAAACTATTTAACTAGG+AGG | + | chr4_3:60870900-60870919 | None:intergenic | 30.0% | |
| !!! | GTTAAATAGTTTTGGATGAG+TGG | - | chr4_3:60870904-60870923 | Msa0653060:intron | 30.0% |
| ! | TTATGCATTTTGTACTTTGC+AGG | - | chr4_3:60871121-60871140 | Msa0653060:intron | 30.0% |
| AACTTGGTTATTGTGAAGAA+AGG | - | chr4_3:60871238-60871257 | Msa0653060:intron | 30.0% | |
| ACAAAAATGAATACAAGTGG+AGG | + | chr4_3:60871551-60871570 | None:intergenic | 30.0% | |
| ACAGTATACATTGTCTAGAT+TGG | - | chr4_3:60871647-60871666 | Msa0653060:intron | 30.0% | |
| CAGTATACATTGTCTAGATT+GGG | - | chr4_3:60871648-60871667 | Msa0653060:intron | 30.0% | |
| AGTATACATTGTCTAGATTG+GGG | - | chr4_3:60871649-60871668 | Msa0653060:intron | 30.0% | |
| !! | CTGTATTGGTACAATTTTAC+CGG | + | chr4_3:60871739-60871758 | None:intergenic | 30.0% |
| ATGAATTGTAATCTTAGTGG+TGG | - | chr4_3:60871768-60871787 | Msa0653060:intron | 30.0% | |
| TTGATGTTATGTTTGCACAA+TGG | - | chr4_3:60872235-60872254 | Msa0653060:intron | 30.0% | |
| CTAAACAAACCAATCCAAAC+AGG | + | chr4_3:60869980-60869999 | None:intergenic | 35.0% | |
| TCTCCGATAGTAATACTAAG+AGG | + | chr4_3:60870672-60870691 | None:intergenic | 35.0% | |
| ! | CCCTCCTAGTTAAATAGTTT+TGG | - | chr4_3:60870896-60870915 | Msa0653060:intron | 35.0% |
| TGGGAAACATGCATATAGTA+TGG | - | chr4_3:60870924-60870943 | Msa0653060:intron | 35.0% | |
| AAAAAATCCATGCCATAGTG+AGG | - | chr4_3:60870949-60870968 | Msa0653060:intron | 35.0% | |
| AAAAATCCATGCCATAGTGA+GGG | - | chr4_3:60870950-60870969 | Msa0653060:intron | 35.0% | |
| ! | GAGTAAGCTTCTTTTCTACT+TGG | - | chr4_3:60871090-60871109 | Msa0653060:intron | 35.0% |
| TAACCAAGTTCAAAACAGAG+AGG | + | chr4_3:60871228-60871247 | None:intergenic | 35.0% | |
| ! | AAAGGTGATAATGATCTTCC+AGG | - | chr4_3:60871256-60871275 | Msa0653060:intron | 35.0% |
| ! | AAGGTGATAATGATCTTCCA+GGG | - | chr4_3:60871257-60871276 | Msa0653060:intron | 35.0% |
| AATCAGAAACTTACCATCCT+TGG | + | chr4_3:60871410-60871429 | None:intergenic | 35.0% | |
| AGAAATGGTTACGATATTCG+TGG | + | chr4_3:60871433-60871452 | None:intergenic | 35.0% | |
| TATCCTTATATTAAGGGTGG+TGG | - | chr4_3:60871458-60871477 | Msa0653060:intron | 35.0% | |
| ATCCTTATATTAAGGGTGGT+GGG | - | chr4_3:60871459-60871478 | Msa0653060:intron | 35.0% | |
| AAACAGTTGTCCAAACTACT+AGG | - | chr4_3:60871515-60871534 | Msa0653060:intron | 35.0% | |
| AACAGTTGTCCAAACTACTA+GGG | - | chr4_3:60871516-60871535 | Msa0653060:intron | 35.0% | |
| AATCGCAAATTGTGAGGAAA+CGG | + | chr4_3:60871701-60871720 | None:intergenic | 35.0% | |
| CAAGAAGAAGAGAATTGCTA+AGG | - | chr4_3:60871887-60871906 | Msa0653060:intron | 35.0% | |
| AATTGCTAAGGCAAAATCAG+AGG | - | chr4_3:60871899-60871918 | Msa0653060:intron | 35.0% | |
| !! | TTCATTAGTCTTGTTCCTTG+TGG | - | chr4_3:60872088-60872107 | Msa0653060:intron | 35.0% |
| !! | TCATTAGTCTTGTTCCTTGT+GGG | - | chr4_3:60872089-60872108 | Msa0653060:intron | 35.0% |
| CTGCTATGATTAACATGAAC+AGG | - | chr4_3:60872288-60872307 | Msa0653060:CDS | 35.0% | |
| ! | TAGCTTGTAGAGGAATAAGT+AGG | - | chr4_3:60872313-60872332 | Msa0653060:intron | 35.0% |
| !! | ATAGCCAGTCTTGTTAAAAG+TGG | - | chr4_3:60872440-60872459 | Msa0653060:five_prime_UTR | 35.0% |
| !! | ATCTCCACTTTTAACAAGAC+TGG | + | chr4_3:60872447-60872466 | None:intergenic | 35.0% |
| ! | ACTGATATTTGGAGCCTGTT+TGG | - | chr4_3:60869963-60869982 | Msa0653060:CDS | 40.0% |
| ! | TATTTGGAGCCTGTTTGGAT+TGG | - | chr4_3:60869968-60869987 | Msa0653060:CDS | 40.0% |
| AGGATTTCACAGGAAGTTCT+TGG | - | chr4_3:60870352-60870371 | Msa0653060:intron | 40.0% | |
| !! | GAAGTTCTTGGTGATGCTTT+GGG | - | chr4_3:60870364-60870383 | Msa0653060:intron | 40.0% |
| GGTTATGTCTTCAAGATCAC+TGG | - | chr4_3:60870495-60870514 | Msa0653060:intron | 40.0% | |
| TATGTCTTCAAGATCACTGG+TGG | - | chr4_3:60870498-60870517 | Msa0653060:intron | 40.0% | |
| ATGTCTTCAAGATCACTGGT+GGG | - | chr4_3:60870499-60870518 | Msa0653060:intron | 40.0% | |
| TAAAGTTAGTGGAGACGTTG+AGG | + | chr4_3:60870860-60870879 | None:intergenic | 40.0% | |
| AAGTTCAAAACAGAGAGGTC+GGG | + | chr4_3:60871223-60871242 | None:intergenic | 40.0% | |
| CAAGTTCAAAACAGAGAGGT+CGG | + | chr4_3:60871224-60871243 | None:intergenic | 40.0% | |
| TTACTGATGTTGAGAAGCCA+AGG | - | chr4_3:60871281-60871300 | Msa0653060:intron | 40.0% | |
| ! | GTTGAACAGCTTACGGATTT+TGG | + | chr4_3:60871329-60871348 | None:intergenic | 40.0% |
| ! | TTGACAGGTTGAACAGCTTA+CGG | + | chr4_3:60871336-60871355 | None:intergenic | 40.0% |
| TAAGCTGTTCAACCTGTCAA+AGG | - | chr4_3:60871336-60871355 | Msa0653060:intron | 40.0% | |
| TCCTTATATTAAGGGTGGTG+GGG | - | chr4_3:60871460-60871479 | Msa0653060:intron | 40.0% | |
| ACAGTTGTCCAAACTACTAG+GGG | - | chr4_3:60871517-60871536 | Msa0653060:intron | 40.0% | |
| AAACGGCACTTCTTTCAAAC+GGG | + | chr4_3:60871684-60871703 | None:intergenic | 40.0% | |
| GAAACGGCACTTCTTTCAAA+CGG | + | chr4_3:60871685-60871704 | None:intergenic | 40.0% | |
| AAGGACAATCGCAAATTGTG+AGG | + | chr4_3:60871707-60871726 | None:intergenic | 40.0% | |
| ! | ATTTTACCGGATGTCACTGA+AGG | + | chr4_3:60871726-60871745 | None:intergenic | 40.0% |
| TTGTTTGATTGCAGGGAAGA+AGG | - | chr4_3:60871791-60871810 | Msa0653060:intron | 40.0% | |
| AGCTCCAAAGATACAACGAT+TGG | - | chr4_3:60871821-60871840 | Msa0653060:intron | 40.0% | |
| GTGACCAATCGTTGTATCTT+TGG | + | chr4_3:60871828-60871847 | None:intergenic | 40.0% | |
| GTTTATCATCAACACCCACA+AGG | + | chr4_3:60872106-60872125 | None:intergenic | 40.0% | |
| AGGACGAGATTCCAACATGA+AGG | - | chr4_3:60869513-60869532 | Msa0653060:three_prime_UTR | 45.0% | |
| TTCTTCTGACATCCAGTGGT+TGG | + | chr4_3:60869643-60869662 | None:intergenic | 45.0% | |
| AAGCTTCTTCTGACATCCAG+TGG | + | chr4_3:60869647-60869666 | None:intergenic | 45.0% | |
| TATATTGCAGCCGTGCTTTC+TGG | - | chr4_3:60870323-60870342 | Msa0653060:intron | 45.0% | |
| ATATTGCAGCCGTGCTTTCT+GGG | - | chr4_3:60870324-60870343 | Msa0653060:intron | 45.0% | |
| !! | GGAAGTTCTTGGTGATGCTT+TGG | - | chr4_3:60870363-60870382 | Msa0653060:intron | 45.0% |
| ! | GTTGTGATTTTGCTCTCTGC+AGG | - | chr4_3:60870464-60870483 | Msa0653060:intron | 45.0% |
| TTGCTCTCTGCAGGAGTTTA+AGG | - | chr4_3:60870473-60870492 | Msa0653060:intron | 45.0% | |
| TGCTCTCTGCAGGAGTTTAA+GGG | - | chr4_3:60870474-60870493 | Msa0653060:intron | 45.0% | |
| ACAAGGATTCCCAATGAAGC+AGG | - | chr4_3:60870530-60870549 | Msa0653060:CDS | 45.0% | |
| CAAGGATTCCCAATGAAGCA+GGG | - | chr4_3:60870531-60870550 | Msa0653060:CDS | 45.0% | |
| TCAACACTCCCTGCTTCATT+GGG | + | chr4_3:60870542-60870561 | None:intergenic | 45.0% | |
| TATGGAGCAAGAGCCTAACA+CGG | + | chr4_3:60870572-60870591 | None:intergenic | 45.0% | |
| GCAACATACAGTATGCCGAA+AGG | + | chr4_3:60870636-60870655 | None:intergenic | 45.0% | |
| ! | TGGAGACGTTGAGGTATTTG+TGG | + | chr4_3:60870851-60870870 | None:intergenic | 45.0% |
| TCATGGAAAGCCCTACCTTA+GGG | + | chr4_3:60870992-60871011 | None:intergenic | 45.0% | |
| ATCATGGAAAGCCCTACCTT+AGG | + | chr4_3:60870993-60871012 | None:intergenic | 45.0% | |
| AGTTCAAAACAGAGAGGTCG+GGG | + | chr4_3:60871222-60871241 | None:intergenic | 45.0% | |
| !! | CGACCTCTCTGTTTTGAACT+TGG | - | chr4_3:60871222-60871241 | Msa0653060:intron | 45.0% |
| TTCTCAACATCAGTAAGCCC+TGG | + | chr4_3:60871277-60871296 | None:intergenic | 45.0% | |
| ! | CGGATTTTGGATGCTCTCTT+AGG | + | chr4_3:60871316-60871335 | None:intergenic | 45.0% |
| GCACATCATCATCCTTTGAC+AGG | + | chr4_3:60871351-60871370 | None:intergenic | 45.0% | |
| !! | CCTTGGTGGTGAAAGTTCTA+CGG | + | chr4_3:60871393-60871412 | None:intergenic | 45.0% |
| AGAACTTTCACCACCAAGGA+TGG | - | chr4_3:60871394-60871413 | Msa0653060:CDS | 45.0% | |
| CAGAAACTTACCATCCTTGG+TGG | + | chr4_3:60871407-60871426 | None:intergenic | 45.0% | |
| ! | CCTTATATTAAGGGTGGTGG+GGG | - | chr4_3:60871461-60871480 | Msa0653060:intron | 45.0% |
| CTATGAAGCCCCTAGTAGTT+TGG | + | chr4_3:60871528-60871547 | None:intergenic | 45.0% | |
| GATTGTCCTTCAGTGACATC+CGG | - | chr4_3:60871717-60871736 | Msa0653060:intron | 45.0% | |
| AGTGGTGGTTGTTTGATTGC+AGG | - | chr4_3:60871783-60871802 | Msa0653060:intron | 45.0% | |
| GTGGTGGTTGTTTGATTGCA+GGG | - | chr4_3:60871784-60871803 | Msa0653060:intron | 45.0% | |
| TCACTCCTTTGACACTCCAA+AGG | - | chr4_3:60871844-60871863 | Msa0653060:intron | 45.0% | |
| CAATTCTTGCTCGCTTCCTT+TGG | + | chr4_3:60871863-60871882 | None:intergenic | 45.0% | |
| ACTCCTTGCATCCAGATTGA+AGG | - | chr4_3:60871938-60871957 | Msa0653060:intron | 45.0% | |
| ATCCAGATTGAAGGAGCAGA+GGG | - | chr4_3:60871947-60871966 | Msa0653060:intron | 45.0% | |
| TCTTAGCCAAGCTCTCACTT+CGG | + | chr4_3:60871977-60871996 | None:intergenic | 45.0% | |
| ! | TGGCTTAGCACTGGATAATC+TGG | + | chr4_3:60872006-60872025 | None:intergenic | 45.0% |
| GCAGCTTACAGCTAGAGATA+TGG | - | chr4_3:60872041-60872060 | Msa0653060:intron | 45.0% | |
| ! | TGAACAGGTCTAGCTTGTAG+AGG | - | chr4_3:60872303-60872322 | Msa0653060:intron | 45.0% |
| AACGTTGCCAATCCAACCAC+TGG | - | chr4_3:60869628-60869647 | Msa0653060:three_prime_UTR | 50.0% | |
| CTGACATCCAGTGGTTGGAT+TGG | + | chr4_3:60869638-60869657 | None:intergenic | 50.0% | |
| TCCTCTTGTCCCAGAAAGCA+CGG | + | chr4_3:60870336-60870355 | None:intergenic | 50.0% | |
| CTGGGACAAGAGGATTTCAC+AGG | - | chr4_3:60870342-60870361 | Msa0653060:intron | 50.0% | |
| ! | ACTGGTGGGTGTGACAAACA+AGG | - | chr4_3:60870513-60870532 | Msa0653060:intron | 50.0% |
| GTCAACACTCCCTGCTTCAT+TGG | + | chr4_3:60870543-60870562 | None:intergenic | 50.0% | |
| GTTAGGCTCTTGCTCCATAG+AGG | - | chr4_3:60870573-60870592 | Msa0653060:CDS | 50.0% | |
| CATGGAAAGCCCTACCTTAG+GGG | + | chr4_3:60870991-60871010 | None:intergenic | 50.0% | |
| ! | ACTCCTTGTTTCCGTGGACA+CGG | - | chr4_3:60871145-60871164 | Msa0653060:intron | 50.0% |
| CGTAGAAGGAAGTCTGTTCG+TGG | - | chr4_3:60871184-60871203 | Msa0653060:intron | 50.0% | |
| GTTGAGAAGCCAAGGATGAG+AGG | - | chr4_3:60871289-60871308 | Msa0653060:intron | 50.0% | |
| CTCTTAGGACCTCTCATCCT+TGG | + | chr4_3:60871301-60871320 | None:intergenic | 50.0% | |
| GGTGGTGAAAGTTCTACGGT+AGG | + | chr4_3:60871389-60871408 | None:intergenic | 50.0% | |
| CCGTAGAACTTTCACCACCA+AGG | - | chr4_3:60871390-60871409 | Msa0653060:CDS | 50.0% | |
| CCCCCACCACCCTTAATATA+AGG | + | chr4_3:60871464-60871483 | None:intergenic | 50.0% | |
| !! | CGCTTCCTTTGGAGTGTCAA+AGG | + | chr4_3:60871852-60871871 | None:intergenic | 50.0% |
| GCTCCTTCAATCTGGATGCA+AGG | + | chr4_3:60871944-60871963 | None:intergenic | 50.0% | |
| CATCCAGATTGAAGGAGCAG+AGG | - | chr4_3:60871946-60871965 | Msa0653060:intron | 50.0% | |
| TTCCCTCTGCTCCTTCAATC+TGG | + | chr4_3:60871952-60871971 | None:intergenic | 50.0% | |
| GTGAGAGCTTGGCTAAGAAG+AGG | - | chr4_3:60871979-60871998 | Msa0653060:intron | 50.0% | |
| GCTGTAAGCTGCTTATGCTG+TGG | + | chr4_3:60872033-60872052 | None:intergenic | 50.0% | |
| CGCGGAAACTCTCTTGTGTG+CGG | + | chr4_3:60869482-60869501 | None:intergenic | 55.0% | |
| CGCACACAAGAGAGTTTCCG+CGG | - | chr4_3:60869480-60869499 | Msa0653060:three_prime_UTR | 55.0% | |
| ! | GCAGGAACTCCTTGTTTCCG+TGG | - | chr4_3:60871139-60871158 | Msa0653060:intron | 55.0% |
| CTTCCGTGTCCACGGAAACA+AGG | + | chr4_3:60871151-60871170 | None:intergenic | 55.0% | |
| CTTGTTTCCGTGGACACGGA+AGG | - | chr4_3:60871149-60871168 | Msa0653060:intron | 55.0% | |
| TGTGGCAGATGGCTTAGCAC+TGG | + | chr4_3:60872015-60872034 | None:intergenic | 55.0% | |
| GCTGCTTATGCTGTGGCAGA+TGG | + | chr4_3:60872026-60872045 | None:intergenic | 55.0% | |
| CACAAGAGAGTTTCCGCGGC+TGG | - | chr4_3:60869484-60869503 | Msa0653060:three_prime_UTR | 60.0% | |
| GTTTCCGCGGCTGGATCAAG+AGG | - | chr4_3:60869493-60869512 | Msa0653060:three_prime_UTR | 60.0% | |
| TCGTCCTCTTGATCCAGCCG+CGG | + | chr4_3:60869500-60869519 | None:intergenic | 60.0% | |
| !! | GCCGTGCTTTCTGGGACAAG+AGG | - | chr4_3:60870332-60870351 | Msa0653060:intron | 60.0% |
| !! | AAGCAGGGAGTGTTGACCCC+TGG | - | chr4_3:60870546-60870565 | Msa0653060:CDS | 60.0% |
| TGTTGACCCCTGGCCGTGTT+AGG | - | chr4_3:60870556-60870575 | Msa0653060:CDS | 60.0% | |
| CAAGAGCCTAACACGGCCAG+GGG | + | chr4_3:60870565-60870584 | None:intergenic | 60.0% | |
| GCAAGAGCCTAACACGGCCA+GGG | + | chr4_3:60870566-60870585 | None:intergenic | 60.0% | |
| AGCAAGAGCCTAACACGGCC+AGG | + | chr4_3:60870567-60870586 | None:intergenic | 60.0% | |
| CCTTGGCCCTCACTATGGCA+TGG | + | chr4_3:60870959-60870978 | None:intergenic | 60.0% | |
| CCATGCCATAGTGAGGGCCA+AGG | - | chr4_3:60870956-60870975 | Msa0653060:intron | 60.0% | |
| ! | CCCTACCTTAGGGGAGGTGT+GGG | + | chr4_3:60870982-60871001 | None:intergenic | 60.0% |
| CCCACACCTCCCCTAAGGTA+GGG | - | chr4_3:60870979-60870998 | Msa0653060:intron | 60.0% | |
| GGAAAGCCCTACCTTAGGGG+AGG | + | chr4_3:60870988-60871007 | None:intergenic | 60.0% | |
| CATTGCGCCTTCCGTGTCCA+CGG | + | chr4_3:60871159-60871178 | None:intergenic | 60.0% | |
| ! | GGCGCAATGGAGAGCGTAGA+AGG | - | chr4_3:60871170-60871189 | Msa0653060:intron | 60.0% |
| GGAACGCCGAAGTGAGAGCT+TGG | - | chr4_3:60871968-60871987 | Msa0653060:intron | 60.0% | |
| GTGGGCCTTGGCCCTCACTA+TGG | + | chr4_3:60870964-60870983 | None:intergenic | 65.0% | |
| ! | CTTAGGGGAGGTGTGGGCCT+TGG | + | chr4_3:60870976-60870995 | None:intergenic | 65.0% |
| CAAGGCCCACACCTCCCCTA+AGG | - | chr4_3:60870974-60870993 | Msa0653060:intron | 65.0% | |
| GCCCACACCTCCCCTAAGGT+AGG | - | chr4_3:60870978-60870997 | Msa0653060:intron | 65.0% | |
| GCCCTACCTTAGGGGAGGTG+TGG | + | chr4_3:60870983-60871002 | None:intergenic | 65.0% | |
| ! | CGTGGACACGGAAGGCGCAA+TGG | - | chr4_3:60871157-60871176 | Msa0653060:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 60869466 | 60872468 | 60869466 | ID=Msa0653060;Name=Msa0653060 |
| chr4_3 | mRNA | 60869466 | 60872468 | 60869466 | ID=Msa0653060-mRNA-1;Parent=Msa0653060;Name=Msa0653060-mRNA-1;_AED=0.02;_eAED=0.02;_QI=63|1|1|1|0.83|0.71|7|394|248 |
| chr4_3 | exon | 60869466 | 60869548 | 60869466 | ID=Msa0653060-mRNA-1:exon:16584;Parent=Msa0653060-mRNA-1 |
| chr4_3 | exon | 60869583 | 60870129 | 60869583 | ID=Msa0653060-mRNA-1:exon:16583;Parent=Msa0653060-mRNA-1 |
| chr4_3 | exon | 60870519 | 60870791 | 60870519 | ID=Msa0653060-mRNA-1:exon:16582;Parent=Msa0653060-mRNA-1 |
| chr4_3 | exon | 60871340 | 60871448 | 60871340 | ID=Msa0653060-mRNA-1:exon:16581;Parent=Msa0653060-mRNA-1 |
| chr4_3 | exon | 60871544 | 60871601 | 60871544 | ID=Msa0653060-mRNA-1:exon:16580;Parent=Msa0653060-mRNA-1 |
| chr4_3 | exon | 60872245 | 60872309 | 60872245 | ID=Msa0653060-mRNA-1:exon:16579;Parent=Msa0653060-mRNA-1 |
| chr4_3 | exon | 60872400 | 60872468 | 60872400 | ID=Msa0653060-mRNA-1:exon:16578;Parent=Msa0653060-mRNA-1 |
| chr4_3 | five_prime_UTR | 60872406 | 60872468 | 60872406 | ID=Msa0653060-mRNA-1:five_prime_utr;Parent=Msa0653060-mRNA-1 |
| chr4_3 | CDS | 60872400 | 60872405 | 60872400 | ID=Msa0653060-mRNA-1:cds;Parent=Msa0653060-mRNA-1 |
| chr4_3 | CDS | 60872245 | 60872309 | 60872245 | ID=Msa0653060-mRNA-1:cds;Parent=Msa0653060-mRNA-1 |
| chr4_3 | CDS | 60871544 | 60871601 | 60871544 | ID=Msa0653060-mRNA-1:cds;Parent=Msa0653060-mRNA-1 |
| chr4_3 | CDS | 60871340 | 60871448 | 60871340 | ID=Msa0653060-mRNA-1:cds;Parent=Msa0653060-mRNA-1 |
| chr4_3 | CDS | 60870519 | 60870791 | 60870519 | ID=Msa0653060-mRNA-1:cds;Parent=Msa0653060-mRNA-1 |
| chr4_3 | CDS | 60869894 | 60870129 | 60869894 | ID=Msa0653060-mRNA-1:cds;Parent=Msa0653060-mRNA-1 |
| chr4_3 | three_prime_UTR | 60869583 | 60869893 | 60869583 | ID=Msa0653060-mRNA-1:three_prime_utr;Parent=Msa0653060-mRNA-1 |
| chr4_3 | three_prime_UTR | 60869466 | 60869548 | 60869466 | ID=Msa0653060-mRNA-1:three_prime_utr;Parent=Msa0653060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
