AlfalfaGEDB | Msa1234690

M. sativa cultivar zhongmu-4 / Msa1234690

KEGG: K09512
GO: GO:0003674 GO:0005488 GO:0005515 GO:0051087
PFAM: PF00226.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1234690	XP_003627374.1	97.468	237	4	2	1	237	1	235	1.05e-165	467

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1234690	sp\|Q72GN6\|DNAJ_THET2	33.333	120	74	1	9	128	2	115	7.52e-16	79.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006040	Msa1234690	0.880953	3.588662e-70	-8.615850e-47
Msa0032610	Msa1234690	0.827661	1.383280e-54	-8.615850e-47
Msa0036160	Msa1234690	0.827007	1.984627e-54	-8.615850e-47
Msa0042980	Msa1234690	-0.808258	3.383151e-50	-8.615850e-47
Msa0054750	Msa1234690	0.867790	1.055571e-65	-8.615850e-47
Msa0111310	Msa1234690	0.810241	1.271130e-50	-8.615850e-47
Msa0148120	Msa1234690	0.840144	1.037773e-57	-8.615850e-47
Msa0172780	Msa1234690	0.804237	2.378437e-49	-8.615850e-47
Msa0178860	Msa1234690	-0.800081	1.703349e-48	-8.615850e-47
Msa0197180	Msa1234690	0.826336	2.868874e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1234690	MtrunA17_Chr8g0344721	83.260	227	29	3	1	219	1	226	1.67e-132	372
Msa1234690	MtrunA17_Chr7g0271891	45.161	124	62	3	11	134	17	134	1.13e-31	114
Msa1234690	MtrunA17_Chr4g0044331	43.307	127	66	3	16	139	18	141	1.20e-28	105
Msa1234690	MtrunA17_Chr7g0263971	49.333	75	33	1	6	80	365	434	2.60e-15	74.7
Msa1234690	MtrunA17_Chr2g0282761	47.826	69	31	1	10	78	4	67	3.34e-15	73.6
Msa1234690	MtrunA17_Chr4g0021141	45.455	77	36	1	3	79	15	85	5.37e-15	69.7
Msa1234690	MtrunA17_Chr2g0324921	49.275	69	30	1	10	78	4	67	5.42e-15	73.2
Msa1234690	MtrunA17_Chr2g0295831	47.561	82	36	2	9	90	109	183	7.29e-15	71.2
Msa1234690	MtrunA17_Chr4g0061421	53.731	67	29	1	12	78	10	74	1.09e-14	72.8
Msa1234690	MtrunA17_Chr4g0006391	46.377	69	32	1	10	78	4	67	4.57e-14	70.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1234690	AT3G14200.1	50.649	231	93	8	10	234	12	227	8.53e-61	191
Msa1234690	AT1G72416.4	63.208	106	25	3	10	110	5	101	1.41e-38	132
Msa1234690	AT1G72416.2	64.423	104	23	3	10	108	5	99	1.54e-38	132
Msa1234690	AT1G72416.1	64.423	104	23	3	10	108	5	99	2.11e-38	132
Msa1234690	AT1G72416.3	64.423	104	23	3	10	108	5	99	5.54e-38	131
Msa1234690	AT1G56300.1	50.376	133	58	3	1	130	1	128	2.39e-34	120
Msa1234690	AT1G71000.1	46.897	145	60	6	4	140	2	137	7.65e-32	114
Msa1234690	AT1G56300.2	52.727	110	47	2	1	107	1	108	3.04e-29	106
Msa1234690	AT1G71000.2	41.104	163	81	5	4	160	2	155	3.58e-27	102
Msa1234690	AT1G72416.5	72.000	50	13	1	61	110	10	58	5.54e-17	75.9

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Find 67 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTGGATTGTTATTGT+TGG	0.435217	8_2:+12329149	Msa1234690:five_prime_UTR
AAACAGAAGTTCTGGTAATT+TGG	0.142853	8_2:-12331679	None:intergenic
AAATGCCTTGGAAAATTTGA+TGG	0.373884	8_2:+12332867	Msa1234690:three_prime_UTR
AAATGGAGAGGAGAGCTTTG+AGG	0.455188	8_2:+12331471	Msa1234690:CDS
AAGAGATTAATGTACGACGT+TGG	0.670458	8_2:+12329789	Msa1234690:CDS
AAGCAATTGTACACCCATCT+AGG	0.450605	8_2:+12332906	Msa1234690:three_prime_UTR
AAGCACCTCTCTTAATGCTT+CGG	0.391365	8_2:+12331546	Msa1234690:CDS
AATGCTCTGATTCAGAACTA+AGG	0.513112	8_2:+12329237	Msa1234690:CDS
AATTACCAGAACTTCTGTTT+TGG	0.283009	8_2:+12331682	Msa1234690:CDS
AATTAGCAGAAATTCCAGGA+TGG	0.683865	8_2:-12332693	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTAGACTAGATGGAATGAA+GGG	-	chr8_2:12328818-12328837	None:intergenic	30.0%
TCTAGTTGGTTGTGAAAATT+TGG	+	chr8_2:12329135-12329154	Msa1234690:five_prime_UTR	30.0%
GGAAATAATATGGCTAATGA+AGG	+	chr8_2:12329170-12329189	Msa1234690:exon	30.0%
AGAAGCTAAGAAGAAATTTC+AGG	+	chr8_2:12329587-12329606	Msa1234690:CDS	30.0%
TGCATGTAAATTACCAGAAT+AGG	-	chr8_2:12329625-12329644	None:intergenic	30.0%
TAATTTGAATCATGGCTCAT+GGG	-	chr8_2:12329697-12329716	None:intergenic	30.0%
ATAATTTGAATCATGGCTCA+TGG	-	chr8_2:12329698-12329717	None:intergenic	30.0%
GTTTCAATATTCATTAGGCA+TGG	-	chr8_2:12330014-12330033	None:intergenic	30.0%
GAAACTGAATTAGGGATATA+AGG	+	chr8_2:12330029-12330048	Msa1234690:intron	30.0%
GGAGAAGAAAAATAATTGGA+CGG	-	chr8_2:12330524-12330543	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	12328734	12333095	12328734	ID=Msa1234690;Name=Msa1234690
chr8_2	mRNA	12328734	12333095	12328734	ID=Msa1234690-mRNA-1;Parent=Msa1234690;Name=Msa1234690-mRNA-1;_AED=0.21;_eAED=0.21;_QI=445\|1\|1\|1\|1\|1\|6\|378\|237
chr8_2	exon	12328734	12329283	12328734	ID=Msa1234690-mRNA-1:exon:4754;Parent=Msa1234690-mRNA-1
chr8_2	exon	12329537	12329630	12329537	ID=Msa1234690-mRNA-1:exon:4755;Parent=Msa1234690-mRNA-1
chr8_2	exon	12329772	12329842	12329772	ID=Msa1234690-mRNA-1:exon:4756;Parent=Msa1234690-mRNA-1
chr8_2	exon	12330823	12330879	12330823	ID=Msa1234690-mRNA-1:exon:4757;Parent=Msa1234690-mRNA-1
chr8_2	exon	12331469	12331705	12331469	ID=Msa1234690-mRNA-1:exon:4758;Parent=Msa1234690-mRNA-1
chr8_2	exon	12332568	12333095	12332568	ID=Msa1234690-mRNA-1:exon:4759;Parent=Msa1234690-mRNA-1
chr8_2	five_prime_UTR	12328734	12329178	12328734	ID=Msa1234690-mRNA-1:five_prime_utr;Parent=Msa1234690-mRNA-1
chr8_2	CDS	12329179	12329283	12329179	ID=Msa1234690-mRNA-1:cds;Parent=Msa1234690-mRNA-1
chr8_2	CDS	12329537	12329630	12329537	ID=Msa1234690-mRNA-1:cds;Parent=Msa1234690-mRNA-1
chr8_2	CDS	12329772	12329842	12329772	ID=Msa1234690-mRNA-1:cds;Parent=Msa1234690-mRNA-1
chr8_2	CDS	12330823	12330879	12330823	ID=Msa1234690-mRNA-1:cds;Parent=Msa1234690-mRNA-1
chr8_2	CDS	12331469	12331705	12331469	ID=Msa1234690-mRNA-1:cds;Parent=Msa1234690-mRNA-1
chr8_2	CDS	12332568	12332717	12332568	ID=Msa1234690-mRNA-1:cds;Parent=Msa1234690-mRNA-1
chr8_2	three_prime_UTR	12332718	12333095	12332718	ID=Msa1234690-mRNA-1:three_prime_utr;Parent=Msa1234690-mRNA-1

Gene Sequence

>Msa1234690

ATGGCTAATGAAGGAAACAAAAGCAATGATTTCTATGCAGTTTTGGGATTGAATAAGGAATGCTCTGATTCAGAACTAAGGAATGCTTATAAGAAACTTGCACTGAAATGGCATCCAGATCGTTGTTCAGCTTCAGGGAATGTGAAGTTTGTGGAAGAAGCTAAGAAGAAATTTCAGGCAATTCAAGAAGCCTATTCTGTTTTATCTGACTCGAACAAGAGATTAATGTACGACGTTGGAGTTTACGACAACAGTGATGATGACGAAAATGGTATGGGAGACTTTCTGAACGAAATGGTTACAATGATGAGCCAAACTAAATCAAATGAAAATGGAGAGGAGAGCTTTGAGGAGTTGCAACAGTTATTTGATGATATGTTTCAAGCGGATATCGGATTAAATGGAAGCACCTCTCTTAATGCTTCGGGTTGCTCCACTTCATCTACTTTCATGACTTTCGGTGAAAGCGCGAATTCAAATAAGCGCAATTCTACTCAGATGAATTATGGGAAGGCAGAGGATTCTTCTAGTTTTGGTCCAAATTACCAGAACTTCTGTTTTGGGATGAAGCACCTTCAAGAAGATGTGGAGAAGGAAAAAGGGGGAATTCTAGAAGGAGGAGGTAGCAAAAAACAAAGAAAAGGAAGAAAACAAAAAATCTCATGTGGACATGATGTTTCCTCTAATGACCATCCTGGAATTTCTGCTAATTGA

Protein sequence

>Msa1234690

MANEGNKSNDFYAVLGLNKECSDSELRNAYKKLALKWHPDRCSASGNVKFVEEAKKKFQAIQEAYSVLSDSNKRLMYDVGVYDNSDDDENGMGDFLNEMVTMMSQTKSNENGEESFEELQQLFDDMFQADIGLNGSTSLNASGCSTSSTFMTFGESANSNKRNSTQMNYGKAEDSSSFGPNYQNFCFGMKHLQEDVEKEKGGILEGGGSKKQRKGRKQKISCGHDVSSNDHPGISAN*