Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1234690 | XP_003627374.1 | 97.468 | 237 | 4 | 2 | 1 | 237 | 1 | 235 | 1.05e-165 | 467 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1234690 | sp|Q72GN6|DNAJ_THET2 | 33.333 | 120 | 74 | 1 | 9 | 128 | 2 | 115 | 7.52e-16 | 79.0 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0006040 | Msa1234690 | 0.880953 | 3.588662e-70 | -8.615850e-47 |
Msa0032610 | Msa1234690 | 0.827661 | 1.383280e-54 | -8.615850e-47 |
Msa0036160 | Msa1234690 | 0.827007 | 1.984627e-54 | -8.615850e-47 |
Msa0042980 | Msa1234690 | -0.808258 | 3.383151e-50 | -8.615850e-47 |
Msa0054750 | Msa1234690 | 0.867790 | 1.055571e-65 | -8.615850e-47 |
Msa0111310 | Msa1234690 | 0.810241 | 1.271130e-50 | -8.615850e-47 |
Msa0615270 | Msa1234690 | -0.800555 | 1.364258e-48 | -8.615850e-47 |
Msa0629650 | Msa1234690 | 0.811743 | 6.009336e-51 | -8.615850e-47 |
Msa0650730 | Msa1234690 | 0.804628 | 1.971407e-49 | -8.615850e-47 |
Msa0654010 | Msa1234690 | 0.814287 | 1.663300e-51 | -8.615850e-47 |
Msa0661210 | Msa1234690 | 0.872363 | 3.368594e-67 | -8.615850e-47 |
Msa0671740 | Msa1234690 | 0.801878 | 7.313219e-49 | -8.615850e-47 |
Msa0684850 | Msa1234690 | 0.825735 | 3.985329e-54 | -8.615850e-47 |
Msa0723130 | Msa1234690 | 0.806100 | 9.691723e-50 | -8.615850e-47 |
Msa0755080 | Msa1234690 | 0.845242 | 4.588435e-59 | -8.615850e-47 |
Msa0782470 | Msa1234690 | 0.811807 | 5.820155e-51 | -8.615850e-47 |
Msa0795920 | Msa1234690 | 0.850188 | 1.995548e-60 | -8.615850e-47 |
Msa0796950 | Msa1234690 | 0.832980 | 6.934483e-56 | -8.615850e-47 |
Msa0797970 | Msa1234690 | 0.857427 | 1.644930e-62 | -8.615850e-47 |
Msa0801360 | Msa1234690 | 0.809167 | 2.162963e-50 | -8.615850e-47 |
Msa0834450 | Msa1234690 | 0.845368 | 4.242304e-59 | -8.615850e-47 |
Msa0839830 | Msa1234690 | 0.807293 | 5.424463e-50 | -8.615850e-47 |
Msa0148120 | Msa1234690 | 0.840144 | 1.037773e-57 | -8.615850e-47 |
Msa0172780 | Msa1234690 | 0.804237 | 2.378437e-49 | -8.615850e-47 |
Msa0178860 | Msa1234690 | -0.800081 | 1.703349e-48 | -8.615850e-47 |
Msa0197180 | Msa1234690 | 0.826336 | 2.868874e-54 | -8.615850e-47 |
Msa0223380 | Msa1234690 | 0.803666 | 3.126518e-49 | -8.615850e-47 |
Msa1234690 | Msa1234730 | 0.977508 | 6.394284e-144 | -8.615850e-47 |
Msa1234690 | Msa1260130 | 0.802958 | 4.381751e-49 | -8.615850e-47 |
Msa1234690 | Msa1282920 | 0.816050 | 6.751122e-52 | -8.615850e-47 |
Msa1234690 | Msa1301650 | 0.825771 | 3.907494e-54 | -8.615850e-47 |
Msa1234690 | Msa1302100 | 0.815654 | 8.275027e-52 | -8.615850e-47 |
Msa1234690 | Msa1307740 | 0.829218 | 5.822165e-55 | -8.615850e-47 |
Msa1234690 | Msa1315110 | 0.977061 | 4.921096e-143 | -8.615850e-47 |
Msa1234690 | Msa1322190 | 0.809417 | 1.911465e-50 | -8.615850e-47 |
Msa1234690 | Msa1342100 | 0.805163 | 1.524303e-49 | -8.615850e-47 |
Msa1234690 | Msa1359630 | 0.870770 | 1.135321e-66 | -8.615850e-47 |
Msa1234690 | Msa1368980 | 0.804684 | 1.919811e-49 | -8.615850e-47 |
Msa1234690 | Msa1403340 | 0.814115 | 1.815956e-51 | -8.615850e-47 |
Msa1234690 | Msa1419970 | 0.820042 | 8.452634e-53 | -8.615850e-47 |
Msa1234690 | Msa1427830 | 0.808523 | 2.970165e-50 | -8.615850e-47 |
Msa1234690 | Msa1459760 | -0.806715 | 7.189241e-50 | -8.615850e-47 |
Msa1234690 | Msa1465960 | 0.814125 | 1.806243e-51 | -8.615850e-47 |
Msa0379410 | Msa1234690 | 0.826459 | 2.681323e-54 | -8.615850e-47 |
Msa0380040 | Msa1234690 | 0.810432 | 1.156111e-50 | -8.615850e-47 |
Msa0389810 | Msa1234690 | 0.830781 | 2.420528e-55 | -8.615850e-47 |
Msa0394340 | Msa1234690 | 0.825803 | 3.840842e-54 | -8.615850e-47 |
Msa0429290 | Msa1234690 | 0.808301 | 3.312783e-50 | -8.615850e-47 |
Msa0442200 | Msa1234690 | 0.814577 | 1.435303e-51 | -8.615850e-47 |
Msa0457510 | Msa1234690 | 0.818139 | 2.290900e-52 | -8.615850e-47 |
Msa0468130 | Msa1234690 | 0.833569 | 4.945889e-56 | -8.615850e-47 |
Msa0475240 | Msa1234690 | 0.811465 | 6.907821e-51 | -8.615850e-47 |
Msa0475580 | Msa1234690 | 0.822385 | 2.437338e-53 | -8.615850e-47 |
Msa0982270 | Msa1234690 | 0.832844 | 7.497304e-56 | -8.615850e-47 |
Msa1012830 | Msa1234690 | 0.803664 | 3.128770e-49 | -8.615850e-47 |
Msa1012920 | Msa1234690 | 0.806376 | 8.475670e-50 | -8.615850e-47 |
Msa1021340 | Msa1234690 | 0.811104 | 8.274136e-51 | -8.615850e-47 |
Msa1037020 | Msa1234690 | 0.800904 | 1.157996e-48 | -8.615850e-47 |
Msa1054410 | Msa1234690 | 0.843376 | 1.456007e-58 | -8.615850e-47 |
Msa1077670 | Msa1234690 | 0.845493 | 3.924669e-59 | -8.615850e-47 |
Msa1079730 | Msa1234690 | -0.839013 | 2.042435e-57 | -8.615850e-47 |
Msa1089040 | Msa1234690 | 0.804415 | 2.183803e-49 | -8.615850e-47 |
Msa0265380 | Msa1234690 | 0.830352 | 3.081867e-55 | -8.615850e-47 |
Msa0267310 | Msa1234690 | 0.808656 | 2.782560e-50 | -8.615850e-47 |
Msa0268090 | Msa1234690 | 0.838460 | 2.838820e-57 | -8.615850e-47 |
Msa0303360 | Msa1234690 | 0.838674 | 2.499520e-57 | -8.615850e-47 |
Msa0308770 | Msa1234690 | 0.836068 | 1.162050e-56 | -8.615850e-47 |
Msa0347610 | Msa1234690 | 0.829166 | 5.993270e-55 | -8.615850e-47 |
Msa1124540 | Msa1234690 | -0.806880 | 6.634627e-50 | -8.615850e-47 |
Msa1132890 | Msa1234690 | 0.820561 | 6.428432e-53 | -8.615850e-47 |
Msa1148750 | Msa1234690 | 0.808664 | 2.771679e-50 | -8.615850e-47 |
Msa1162980 | Msa1234690 | 0.827366 | 1.628069e-54 | -8.615850e-47 |
Msa1164530 | Msa1234690 | 0.802158 | 6.405588e-49 | -8.615850e-47 |
Msa1168040 | Msa1234690 | -0.839545 | 1.485908e-57 | -8.615850e-47 |
Msa1174870 | Msa1234690 | 0.981930 | 8.396746e-154 | -8.615850e-47 |
Msa1176070 | Msa1234690 | 0.805277 | 1.443027e-49 | -8.615850e-47 |
Msa1187520 | Msa1234690 | 0.804946 | 1.691800e-49 | -8.615850e-47 |
Msa1219810 | Msa1234690 | 0.843468 | 1.375986e-58 | -8.615850e-47 |
Msa0489610 | Msa1234690 | 0.822951 | 1.799094e-53 | -8.615850e-47 |
Msa0504410 | Msa1234690 | 0.856622 | 2.841051e-62 | -8.615850e-47 |
Msa0504450 | Msa1234690 | 0.802558 | 5.299225e-49 | -8.615850e-47 |
Msa0516160 | Msa1234690 | 0.806127 | 9.565451e-50 | -8.615850e-47 |
Msa0519220 | Msa1234690 | 0.818228 | 2.186622e-52 | -8.615850e-47 |
Msa0532540 | Msa1234690 | 0.810084 | 1.373951e-50 | -8.615850e-47 |
Msa0561130 | Msa1234690 | -0.808268 | 3.366462e-50 | -8.615850e-47 |
Msa0580420 | Msa1234690 | 0.830867 | 2.306123e-55 | -8.615850e-47 |
Msa0589390 | Msa1234690 | 0.801592 | 8.374687e-49 | -8.615850e-47 |
Msa0592720 | Msa1234690 | 0.801535 | 8.600855e-49 | -8.615850e-47 |
Msa0859380 | Msa1234690 | 0.818964 | 1.489074e-52 | -8.615850e-47 |
Msa0870150 | Msa1234690 | 0.846760 | 1.774023e-59 | -8.615850e-47 |
Msa0901630 | Msa1234690 | 0.806734 | 7.124872e-50 | -8.615850e-47 |
Msa0903400 | Msa1234690 | 0.810078 | 1.378250e-50 | -8.615850e-47 |
Msa0935850 | Msa1234690 | 0.840326 | 9.299871e-58 | -8.615850e-47 |
Msa0941540 | Msa1234690 | 0.806891 | 6.598989e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1234690 | MtrunA17_Chr8g0344721 | 83.260 | 227 | 29 | 3 | 1 | 219 | 1 | 226 | 1.67e-132 | 372 |
Msa1234690 | MtrunA17_Chr7g0271891 | 45.161 | 124 | 62 | 3 | 11 | 134 | 17 | 134 | 1.13e-31 | 114 |
Msa1234690 | MtrunA17_Chr4g0044331 | 43.307 | 127 | 66 | 3 | 16 | 139 | 18 | 141 | 1.20e-28 | 105 |
Msa1234690 | MtrunA17_Chr7g0263971 | 49.333 | 75 | 33 | 1 | 6 | 80 | 365 | 434 | 2.60e-15 | 74.7 |
Msa1234690 | MtrunA17_Chr2g0282761 | 47.826 | 69 | 31 | 1 | 10 | 78 | 4 | 67 | 3.34e-15 | 73.6 |
Msa1234690 | MtrunA17_Chr4g0021141 | 45.455 | 77 | 36 | 1 | 3 | 79 | 15 | 85 | 5.37e-15 | 69.7 |
Msa1234690 | MtrunA17_Chr2g0324921 | 49.275 | 69 | 30 | 1 | 10 | 78 | 4 | 67 | 5.42e-15 | 73.2 |
Msa1234690 | MtrunA17_Chr2g0295831 | 47.561 | 82 | 36 | 2 | 9 | 90 | 109 | 183 | 7.29e-15 | 71.2 |
Msa1234690 | MtrunA17_Chr4g0061421 | 53.731 | 67 | 29 | 1 | 12 | 78 | 10 | 74 | 1.09e-14 | 72.8 |
Msa1234690 | MtrunA17_Chr4g0006391 | 46.377 | 69 | 32 | 1 | 10 | 78 | 4 | 67 | 4.57e-14 | 70.5 |
Msa1234690 | MtrunA17_Chr2g0282741 | 43.478 | 69 | 34 | 1 | 10 | 78 | 4 | 67 | 6.96e-14 | 70.1 |
Msa1234690 | MtrunA17_Chr4g0040501 | 44.928 | 69 | 33 | 1 | 10 | 78 | 4 | 67 | 1.09e-13 | 69.3 |
Msa1234690 | MtrunA17_Chr3g0138471 | 43.478 | 69 | 34 | 1 | 10 | 78 | 4 | 67 | 4.45e-13 | 67.4 |
Msa1234690 | MtrunA17_Chr5g0427221 | 40.741 | 81 | 38 | 2 | 7 | 83 | 45 | 119 | 6.44e-13 | 64.3 |
Msa1234690 | MtrunA17_Chr7g0258061 | 42.857 | 84 | 41 | 2 | 4 | 86 | 16 | 93 | 9.66e-13 | 66.2 |
Msa1234690 | MtrunA17_Chr1g0173931 | 42.500 | 80 | 39 | 2 | 8 | 86 | 36 | 109 | 1.60e-12 | 65.5 |
Msa1234690 | MtrunA17_Chr1g0209551 | 40.476 | 84 | 44 | 1 | 9 | 92 | 15 | 92 | 2.01e-12 | 65.9 |
Msa1234690 | MtrunA17_Chr7g0269841 | 50.000 | 68 | 28 | 2 | 11 | 78 | 27 | 88 | 5.42e-12 | 64.3 |
Msa1234690 | MtrunA17_Chr8g0378161 | 44.118 | 68 | 34 | 1 | 11 | 78 | 61 | 124 | 7.41e-12 | 62.4 |
Msa1234690 | MtrunA17_Chr5g0399201 | 42.857 | 70 | 37 | 1 | 10 | 79 | 12 | 78 | 9.16e-12 | 64.3 |
Msa1234690 | MtrunA17_Chr2g0295821 | 41.250 | 80 | 40 | 2 | 1 | 80 | 95 | 167 | 3.82e-11 | 62.0 |
Msa1234690 | MtrunA17_Chr3g0123861 | 44.928 | 69 | 31 | 1 | 10 | 78 | 82 | 143 | 6.56e-11 | 61.6 |
Msa1234690 | MtrunA17_Chr6g0460381 | 48.485 | 66 | 31 | 2 | 10 | 74 | 3 | 66 | 7.52e-11 | 59.7 |
Msa1234690 | MtrunA17_Chr6g0460411 | 47.143 | 70 | 34 | 2 | 10 | 78 | 2 | 69 | 9.06e-11 | 59.7 |
Msa1234690 | MtrunA17_Chr6g0460461 | 47.143 | 70 | 34 | 2 | 10 | 78 | 2 | 69 | 9.10e-11 | 59.7 |
Msa1234690 | MtrunA17_Chr5g0415731 | 38.889 | 72 | 42 | 1 | 9 | 78 | 4 | 75 | 9.18e-11 | 58.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1234690 | AT3G14200.1 | 50.649 | 231 | 93 | 8 | 10 | 234 | 12 | 227 | 8.53e-61 | 191 |
Msa1234690 | AT1G72416.4 | 63.208 | 106 | 25 | 3 | 10 | 110 | 5 | 101 | 1.41e-38 | 132 |
Msa1234690 | AT1G72416.2 | 64.423 | 104 | 23 | 3 | 10 | 108 | 5 | 99 | 1.54e-38 | 132 |
Msa1234690 | AT1G72416.1 | 64.423 | 104 | 23 | 3 | 10 | 108 | 5 | 99 | 2.11e-38 | 132 |
Msa1234690 | AT1G72416.3 | 64.423 | 104 | 23 | 3 | 10 | 108 | 5 | 99 | 5.54e-38 | 131 |
Msa1234690 | AT1G56300.1 | 50.376 | 133 | 58 | 3 | 1 | 130 | 1 | 128 | 2.39e-34 | 120 |
Msa1234690 | AT1G71000.1 | 46.897 | 145 | 60 | 6 | 4 | 140 | 2 | 137 | 7.65e-32 | 114 |
Msa1234690 | AT1G56300.2 | 52.727 | 110 | 47 | 2 | 1 | 107 | 1 | 108 | 3.04e-29 | 106 |
Msa1234690 | AT1G71000.2 | 41.104 | 163 | 81 | 5 | 4 | 160 | 2 | 155 | 3.58e-27 | 102 |
Msa1234690 | AT1G72416.5 | 72.000 | 50 | 13 | 1 | 61 | 110 | 10 | 58 | 5.54e-17 | 75.9 |
Msa1234690 | AT5G01390.3 | 49.275 | 69 | 30 | 1 | 10 | 78 | 4 | 67 | 4.73e-15 | 72.4 |
Msa1234690 | AT5G01390.2 | 49.275 | 69 | 30 | 1 | 10 | 78 | 4 | 67 | 8.76e-15 | 72.4 |
Msa1234690 | AT1G59725.1 | 46.377 | 69 | 33 | 1 | 10 | 78 | 4 | 68 | 1.11e-14 | 72.4 |
Msa1234690 | AT5G01390.1 | 49.275 | 69 | 30 | 1 | 10 | 78 | 4 | 67 | 1.41e-14 | 72.4 |
Msa1234690 | AT5G49060.2 | 46.914 | 81 | 35 | 3 | 7 | 86 | 96 | 169 | 1.53e-14 | 72.4 |
Msa1234690 | AT5G49060.1 | 46.914 | 81 | 35 | 3 | 7 | 86 | 96 | 169 | 1.53e-14 | 72.4 |
Msa1234690 | AT5G01390.4 | 49.275 | 69 | 30 | 1 | 10 | 78 | 4 | 67 | 2.72e-14 | 70.1 |
Msa1234690 | AT5G03160.1 | 46.667 | 75 | 35 | 1 | 6 | 80 | 366 | 435 | 4.33e-14 | 71.2 |
Msa1234690 | AT5G25530.2 | 44.928 | 69 | 33 | 1 | 10 | 78 | 4 | 67 | 6.62e-14 | 70.5 |
Msa1234690 | AT4G28480.2 | 46.377 | 69 | 32 | 1 | 10 | 78 | 4 | 67 | 8.98e-14 | 69.7 |
Msa1234690 | AT3G08910.1 | 46.377 | 69 | 32 | 1 | 10 | 78 | 4 | 67 | 1.13e-13 | 69.7 |
Msa1234690 | AT4G28480.1 | 46.377 | 69 | 32 | 1 | 10 | 78 | 4 | 67 | 1.47e-13 | 69.3 |
Msa1234690 | AT2G35720.1 | 42.308 | 78 | 42 | 1 | 2 | 79 | 7 | 81 | 2.35e-13 | 69.3 |
Msa1234690 | AT3G47940.1 | 42.857 | 70 | 36 | 1 | 10 | 79 | 4 | 69 | 2.54e-13 | 68.9 |
Msa1234690 | AT1G10350.1 | 42.029 | 69 | 35 | 1 | 10 | 78 | 4 | 67 | 4.20e-13 | 68.2 |
Msa1234690 | AT5G16650.1 | 39.024 | 82 | 43 | 2 | 3 | 83 | 4 | 79 | 6.57e-13 | 64.3 |
Msa1234690 | AT5G06910.1 | 38.525 | 122 | 59 | 5 | 1 | 117 | 19 | 129 | 7.79e-13 | 67.0 |
Msa1234690 | AT2G20560.1 | 44.928 | 69 | 33 | 1 | 10 | 78 | 4 | 67 | 9.50e-13 | 67.0 |
Msa1234690 | AT3G12170.1 | 38.739 | 111 | 55 | 5 | 1 | 105 | 1 | 104 | 2.11e-12 | 65.5 |
Msa1234690 | AT5G16650.2 | 39.024 | 82 | 43 | 2 | 3 | 83 | 4 | 79 | 2.67e-12 | 63.5 |
Msa1234690 | AT2G33735.1 | 50.704 | 71 | 25 | 2 | 10 | 78 | 22 | 84 | 3.32e-12 | 62.0 |
Msa1234690 | AT2G33735.2 | 50.704 | 71 | 25 | 2 | 10 | 78 | 22 | 84 | 3.32e-12 | 62.0 |
Msa1234690 | AT3G12170.2 | 37.838 | 111 | 56 | 5 | 1 | 105 | 37 | 140 | 5.31e-12 | 64.7 |
Msa1234690 | AT4G39960.1 | 39.560 | 91 | 47 | 2 | 9 | 98 | 84 | 167 | 2.38e-11 | 63.2 |
Msa1234690 | AT4G39960.2 | 39.560 | 91 | 47 | 2 | 9 | 98 | 84 | 167 | 2.38e-11 | 63.2 |
Msa1234690 | AT5G25530.1 | 40.260 | 77 | 33 | 2 | 10 | 78 | 4 | 75 | 2.45e-11 | 62.8 |
Msa1234690 | AT1G80030.4 | 42.254 | 71 | 34 | 1 | 8 | 78 | 73 | 136 | 5.35e-11 | 62.4 |
Msa1234690 | AT1G80030.2 | 42.254 | 71 | 34 | 1 | 8 | 78 | 73 | 136 | 6.53e-11 | 62.0 |
Msa1234690 | AT1G80030.3 | 42.254 | 71 | 34 | 1 | 8 | 78 | 73 | 136 | 6.53e-11 | 62.0 |
Msa1234690 | AT1G80030.1 | 42.254 | 71 | 34 | 1 | 8 | 78 | 73 | 136 | 6.53e-11 | 62.0 |
Msa1234690 | AT1G28210.3 | 31.973 | 147 | 84 | 5 | 8 | 150 | 46 | 180 | 8.32e-11 | 61.6 |
Msa1234690 | AT1G28210.1 | 31.973 | 147 | 84 | 5 | 8 | 150 | 46 | 180 | 8.44e-11 | 61.6 |
Msa1234690 | AT3G62600.1 | 48.529 | 68 | 29 | 2 | 11 | 78 | 27 | 88 | 8.83e-11 | 61.2 |
Find 67 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAACAGAAGTTCTGGTAATT+TGG | 0.142853 | 8_2:-12331679 | None:intergenic |
AATTCTACTCAGATGAATTA+TGG | 0.200136 | 8_2:+12331628 | Msa1234690:CDS |
TCTAGTTGGTTGTGAAAATT+TGG | 0.205516 | 8_2:+12329135 | Msa1234690:five_prime_UTR |
TGTTATTGTTGGAAATAATA+TGG | 0.247286 | 8_2:+12329160 | Msa1234690:exon |
ATTAGTCATTTGTTGCATTA+TGG | 0.247313 | 8_2:+12333028 | Msa1234690:three_prime_UTR |
GAAGATGTGGAGAAGGAAAA+AGG | 0.260664 | 8_2:+12332583 | Msa1234690:CDS |
CCTTCTCCACATCTTCTTGA+AGG | 0.267807 | 8_2:-12332576 | None:intergenic |
GTGTGTCAACCTTAGCATTT+TGG | 0.273693 | 8_2:+12332743 | Msa1234690:three_prime_UTR |
CAATGATTTCTATGCAGTTT+TGG | 0.279803 | 8_2:+12329202 | Msa1234690:CDS |
CCAGATCGTTGTTCAGCTTC+AGG | 0.283002 | 8_2:+12329546 | Msa1234690:CDS |
AATTACCAGAACTTCTGTTT+TGG | 0.283009 | 8_2:+12331682 | Msa1234690:CDS |
GGCTCACATTTGATTTAGTT+TGG | 0.297419 | 8_2:-12330864 | None:intergenic |
CAAGCGGATATCGGATTAAA+TGG | 0.298600 | 8_2:+12331523 | Msa1234690:CDS |
GCAGAGGATTCTTCTAGTTT+TGG | 0.305479 | 8_2:+12331655 | Msa1234690:CDS |
AGCACCTCTCTTAATGCTTC+GGG | 0.329574 | 8_2:+12331547 | Msa1234690:CDS |
CTTAAACTCAAACTCCTAGA+TGG | 0.329984 | 8_2:-12332920 | None:intergenic |
CTTCAACTTGGATGACAACT+TGG | 0.330506 | 8_2:-12328886 | None:intergenic |
CTAATGTTTCTTTGTATTGT+CGG | 0.332006 | 8_2:-12329064 | None:intergenic |
TTATATGTGATACAGGAAAA+TGG | 0.333099 | 8_2:+12331454 | Msa1234690:intron |
TATATAAAGTCTAGAATTAG+AGG | 0.347820 | 8_2:+12328753 | Msa1234690:five_prime_UTR |
GCAATTCAAGAAGCCTATTC+TGG | 0.348966 | 8_2:+12329609 | Msa1234690:CDS |
AGAAGCTAAGAAGAAATTTC+AGG | 0.357982 | 8_2:+12329587 | Msa1234690:CDS |
TCATCTACTTTCATGACTTT+CGG | 0.362653 | 8_2:+12331580 | Msa1234690:CDS |
AAATGCCTTGGAAAATTTGA+TGG | 0.373884 | 8_2:+12332867 | Msa1234690:three_prime_UTR |
GTTTGGTTGGTTGATCTAGT+TGG | 0.390684 | 8_2:+12329121 | Msa1234690:five_prime_UTR |
AAGCACCTCTCTTAATGCTT+CGG | 0.391365 | 8_2:+12331546 | Msa1234690:CDS |
GATATGTTTCAAGCGGATAT+CGG | 0.410739 | 8_2:+12331514 | Msa1234690:CDS |
TCTGTTGGAGAATTCTAGTT+TGG | 0.411390 | 8_2:+12329104 | Msa1234690:five_prime_UTR |
ACATTAGTTTGATATTTGAT+TGG | 0.420967 | 8_2:+12329080 | Msa1234690:five_prime_UTR |
ATTCTACTCAGATGAATTAT+GGG | 0.423184 | 8_2:+12331629 | Msa1234690:CDS |
TGACCCCAAAACAGAAGTTC+TGG | 0.428777 | 8_2:-12331687 | None:intergenic |
AAAATTTGGATTGTTATTGT+TGG | 0.435217 | 8_2:+12329149 | Msa1234690:five_prime_UTR |
CAGATCGTTGTTCAGCTTCA+GGG | 0.447334 | 8_2:+12329547 | Msa1234690:CDS |
AAGCAATTGTACACCCATCT+AGG | 0.450605 | 8_2:+12332906 | Msa1234690:three_prime_UTR |
TGCATGTAAATTACCAGAAT+AGG | 0.452286 | 8_2:-12329622 | None:intergenic |
AAATGGAGAGGAGAGCTTTG+AGG | 0.455188 | 8_2:+12331471 | Msa1234690:CDS |
TATCAATTAGCAGAAATTCC+AGG | 0.462490 | 8_2:-12332697 | None:intergenic |
CCTGAAGCTGAACAACGATC+TGG | 0.468892 | 8_2:-12329546 | None:intergenic |
AATTCCAGGATGGTCATTAG+AGG | 0.478304 | 8_2:-12332683 | None:intergenic |
GGGAGACTTTCTGAACGAAA+TGG | 0.482099 | 8_2:+12330828 | Msa1234690:CDS |
TTGGATGACAACTTGGGTTG+CGG | 0.483218 | 8_2:-12328879 | None:intergenic |
TACTAAGATAAGATAAACTA+TGG | 0.485649 | 8_2:-12332823 | None:intergenic |
GGAAATAATATGGCTAATGA+AGG | 0.487826 | 8_2:+12329170 | Msa1234690:exon |
TTGGAGAATTCTAGTTTGGT+TGG | 0.496008 | 8_2:+12329108 | Msa1234690:five_prime_UTR |
TTCCCATGACCAAAATGCTA+AGG | 0.508517 | 8_2:-12332752 | None:intergenic |
TGATATTTGATTGGTTCTGT+TGG | 0.511150 | 8_2:+12329089 | Msa1234690:five_prime_UTR |
AATGCTCTGATTCAGAACTA+AGG | 0.513112 | 8_2:+12329237 | Msa1234690:CDS |
TTCAGGGAATGTGAAGTTTG+TGG | 0.516942 | 8_2:+12329563 | Msa1234690:CDS |
ATGGGTGTACAATTGCTTGA+AGG | 0.522891 | 8_2:-12332901 | None:intergenic |
TTAGGAGGTCACAAATGCCT+TGG | 0.526911 | 8_2:+12332855 | Msa1234690:three_prime_UTR |
AGTCATGAAAGTAGATGAAG+TGG | 0.538936 | 8_2:-12331575 | None:intergenic |
TGCTTATAAGAAACTTGCAC+TGG | 0.543386 | 8_2:+12329262 | Msa1234690:CDS |
TTCAACTTGGATGACAACTT+GGG | 0.545053 | 8_2:-12328885 | None:intergenic |
ATTAATATACAACTTCAACT+TGG | 0.554791 | 8_2:-12328898 | None:intergenic |
TTAAACTCAAACTCCTAGAT+GGG | 0.559329 | 8_2:-12332919 | None:intergenic |
GTTTCCTCTAATGACCATCC+TGG | 0.561659 | 8_2:+12332679 | Msa1234690:CDS |
ATTTGATGATATGTTTCAAG+CGG | 0.571158 | 8_2:+12331507 | Msa1234690:CDS |
TTTAGACTAGATGGAATGAA+GGG | 0.573998 | 8_2:-12328815 | None:intergenic |
CCTTCAAGAAGATGTGGAGA+AGG | 0.586502 | 8_2:+12332576 | Msa1234690:CDS |
GAAGCACCTTCAAGAAGATG+TGG | 0.587778 | 8_2:+12332570 | Msa1234690:CDS |
GATGAATTATGGGAAGGCAG+AGG | 0.603296 | 8_2:+12331639 | Msa1234690:CDS |
TACTCAGATGAATTATGGGA+AGG | 0.609702 | 8_2:+12331633 | Msa1234690:CDS |
TGTGATACAGGAAAATGGAG+AGG | 0.651222 | 8_2:+12331459 | Msa1234690:intron |
AAGAGATTAATGTACGACGT+TGG | 0.670458 | 8_2:+12329789 | Msa1234690:CDS |
AATTAGCAGAAATTCCAGGA+TGG | 0.683865 | 8_2:-12332693 | None:intergenic |
GCAACCCGAAGCATTAAGAG+AGG | 0.689028 | 8_2:-12331551 | None:intergenic |
AGGTCTCTAGAGTATTCATG+AGG | 0.690314 | 8_2:+12328773 | Msa1234690:five_prime_UTR |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTGATTATATGAAAAAAAT+CGG | - | chr8_2:12330426-12330445 | None:intergenic | 10.0% |
!! | TATTGCAAAAATATTAAATA+GGG | - | chr8_2:12330888-12330907 | None:intergenic | 10.0% |
!! | ATATTGCAAAAATATTAAAT+AGG | - | chr8_2:12330889-12330908 | None:intergenic | 10.0% |
!!! | TTTATATATTTTTTGTTTAG+TGG | + | chr8_2:12330985-12331004 | Msa1234690:intron | 10.0% |
!! | TATTATTTGAAAATAATTGT+TGG | + | chr8_2:12331222-12331241 | Msa1234690:intron | 10.0% |
!!! | TGAATAAACTTTAGAAAAAA+CGG | - | chr8_2:12329360-12329379 | None:intergenic | 15.0% |
!! | AGGAAAATAATTTGATTAAA+TGG | + | chr8_2:12329510-12329529 | Msa1234690:intron | 15.0% |
!! | ACAAATAATAATTTGAATCA+TGG | - | chr8_2:12329705-12329724 | None:intergenic | 15.0% |
!!! | TTCTCAATCTATTTTTTAAA+CGG | - | chr8_2:12330140-12330159 | None:intergenic | 15.0% |
!! | TTGATTATATGAAAAAAATC+GGG | - | chr8_2:12330425-12330444 | None:intergenic | 15.0% |
!! | AACTTGAATTAATCAATTTA+TGG | - | chr8_2:12331341-12331360 | None:intergenic | 15.0% |
!!! | CTTTAAATTATACAAGATTT+TGG | + | chr8_2:12331909-12331928 | Msa1234690:intron | 15.0% |
!!! | TCTATAAATGCAATTTTTTT+AGG | + | chr8_2:12332479-12332498 | Msa1234690:intron | 15.0% |
!!! | TATATAAAGTCTAGAATTAG+AGG | + | chr8_2:12328753-12328772 | Msa1234690:five_prime_UTR | 20.0% |
!! | ATTAATATACAACTTCAACT+TGG | - | chr8_2:12328901-12328920 | None:intergenic | 20.0% |
!!! | GTTTCTTACTTTTTATGTTA+AGG | + | chr8_2:12328996-12329015 | Msa1234690:five_prime_UTR | 20.0% |
!!! | ACGAATTTTGTGTTTTTATT+TGG | + | chr8_2:12329023-12329042 | Msa1234690:five_prime_UTR | 20.0% |
!!! | TTTTGTGTTTTTATTTGGTT+TGG | + | chr8_2:12329028-12329047 | Msa1234690:five_prime_UTR | 20.0% |
!!! | ACATTAGTTTGATATTTGAT+TGG | + | chr8_2:12329080-12329099 | Msa1234690:five_prime_UTR | 20.0% |
!!! | AAAATTTGGATTGTTATTGT+TGG | + | chr8_2:12329149-12329168 | Msa1234690:five_prime_UTR | 20.0% |
!! | TGTTATTGTTGGAAATAATA+TGG | + | chr8_2:12329160-12329179 | Msa1234690:exon | 20.0% |
!!! | TTTTCTAAAGTTTATTCACA+TGG | + | chr8_2:12329362-12329381 | Msa1234690:intron | 20.0% |
!!! | TTTCTAAAGTTTATTCACAT+GGG | + | chr8_2:12329363-12329382 | Msa1234690:intron | 20.0% |
!! | TATCTTTCTTTCACAAATTT+AGG | - | chr8_2:12329440-12329459 | None:intergenic | 20.0% |
!!! | TTTGTGAAAGAAAGATATTT+TGG | + | chr8_2:12329443-12329462 | Msa1234690:intron | 20.0% |
!!! | AATGTAAATGGTGTTTTTTT+TGG | + | chr8_2:12329744-12329763 | Msa1234690:intron | 20.0% |
!!! | ATGTAAATGGTGTTTTTTTT+GGG | + | chr8_2:12329745-12329764 | Msa1234690:intron | 20.0% |
!! | AAAGTGAAAAGGTAAAATTA+AGG | - | chr8_2:12329967-12329986 | None:intergenic | 20.0% |
!! | ATTCAGTTTCAATATTCATT+AGG | - | chr8_2:12330019-12330038 | None:intergenic | 20.0% |
!! | ATGAATATTGAAACTGAATT+AGG | + | chr8_2:12330020-12330039 | Msa1234690:intron | 20.0% |
!! | TGAATATTGAAACTGAATTA+GGG | + | chr8_2:12330021-12330040 | Msa1234690:intron | 20.0% |
!!! | TGGAAATGAGTTAATTTTTT+AGG | + | chr8_2:12330240-12330259 | Msa1234690:intron | 20.0% |
!!! | GTTTAAAATAGTGACTTAAT+TGG | - | chr8_2:12330310-12330329 | None:intergenic | 20.0% |
!! | TTATAGCACATCAAAATTAT+TGG | - | chr8_2:12330776-12330795 | None:intergenic | 20.0% |
!!! | AAAATGAATTTTGTTTTGCA+GGG | + | chr8_2:12330802-12330821 | Msa1234690:intron | 20.0% |
!! | AACAAGACATAAACATTATT+AGG | - | chr8_2:12331087-12331106 | None:intergenic | 20.0% |
!!! | AATAATGTTTATGTCTTGTT+TGG | + | chr8_2:12331087-12331106 | Msa1234690:intron | 20.0% |
!! | ATTTGAAAATAATTGTTGGA+AGG | + | chr8_2:12331226-12331245 | Msa1234690:intron | 20.0% |
!!! | AGTTAAAAGGATTGAAATTT+TGG | - | chr8_2:12331393-12331412 | None:intergenic | 20.0% |
!! | AATGAATTGAAAGAGTTAAA+AGG | - | chr8_2:12331406-12331425 | None:intergenic | 20.0% |
!! | GATTAATTTATATGTGATAC+AGG | + | chr8_2:12331447-12331466 | Msa1234690:intron | 20.0% |
!! | TTTAACATGTAATTGAGTTA+TGG | + | chr8_2:12331880-12331899 | Msa1234690:intron | 20.0% |
!! | TTAACATGTAATTGAGTTAT+GGG | + | chr8_2:12331881-12331900 | Msa1234690:intron | 20.0% |
!!! | ATGATAGAAGATTTAGAATT+TGG | + | chr8_2:12331942-12331961 | Msa1234690:intron | 20.0% |
!! | ACTCTATTAATAACTCAAAA+TGG | - | chr8_2:12332380-12332399 | None:intergenic | 20.0% |
!!! | ATCCAACATTTTTTTATTCT+TGG | + | chr8_2:12332534-12332553 | Msa1234690:intron | 20.0% |
!! | TACCAAGAATAAAAAAATGT+TGG | - | chr8_2:12332539-12332558 | None:intergenic | 20.0% |
!! | ATGTACAACTAAAAAGATTA+GGG | + | chr8_2:12332794-12332813 | Msa1234690:three_prime_UTR | 20.0% |
!! | TACTAAGATAAGATAAACTA+TGG | - | chr8_2:12332826-12332845 | None:intergenic | 20.0% |
!! | ATCTTAGTACTAAAAAGATT+AGG | + | chr8_2:12332837-12332856 | Msa1234690:three_prime_UTR | 20.0% |
!!! | AATGTCAATTTTGATTTGAA+AGG | + | chr8_2:12333061-12333080 | Msa1234690:three_prime_UTR | 20.0% |
! | CTAATGTTTCTTTGTATTGT+CGG | - | chr8_2:12329067-12329086 | None:intergenic | 25.0% |
!! | AATGATTTCTATGCAGTTTT+GGG | + | chr8_2:12329203-12329222 | Msa1234690:CDS | 25.0% |
!! | ATAAACTTTAGAAAAAACGG+TGG | - | chr8_2:12329357-12329376 | None:intergenic | 25.0% |
!! | ATTGTTGTTATGATGAAAGT+TGG | + | chr8_2:12329475-12329494 | Msa1234690:intron | 25.0% |
! | AAAGTTGGAATTGTTTAGAA+AGG | + | chr8_2:12329490-12329509 | Msa1234690:intron | 25.0% |
! | TTTGATTAAATGGACAGAAA+TGG | + | chr8_2:12329520-12329539 | Msa1234690:intron | 25.0% |
!! | TATTGGGTCTAAAATGTAAA+TGG | + | chr8_2:12329732-12329751 | Msa1234690:intron | 25.0% |
! | CATAACACAAAAATAGAAGT+AGG | - | chr8_2:12329902-12329921 | None:intergenic | 25.0% |
!! | TTGTTTCTTCATTTACTTGA+AGG | + | chr8_2:12329924-12329943 | Msa1234690:intron | 25.0% |
! | TGTTTCTTCATTTACTTGAA+GGG | + | chr8_2:12329925-12329944 | Msa1234690:intron | 25.0% |
! | TTGTTAATGTGAAAGTGAAA+AGG | - | chr8_2:12329978-12329997 | None:intergenic | 25.0% |
!! | CACTTTCACATTAACAATTT+TGG | + | chr8_2:12329981-12330000 | Msa1234690:intron | 25.0% |
!! | TATAAGGATGATTTGATAGT+TGG | + | chr8_2:12330045-12330064 | Msa1234690:intron | 25.0% |
! | AACAATGATATGGTCAATTT+CGG | + | chr8_2:12330195-12330214 | Msa1234690:intron | 25.0% |
! | CAACGAAAACAAGAAAAAAA+TGG | + | chr8_2:12330220-12330239 | Msa1234690:intron | 25.0% |
!!! | AGTCACTATTTTAAACCTAA+AGG | + | chr8_2:12330314-12330333 | Msa1234690:intron | 25.0% |
! | AAGAGGAGAAGAAAAATAAT+TGG | - | chr8_2:12330528-12330547 | None:intergenic | 25.0% |
! | AAAAAGAGATATGTTCTTCA+AGG | + | chr8_2:12330556-12330575 | Msa1234690:intron | 25.0% |
!!! | AACATTTTTTTTCCTCCTTT+GGG | - | chr8_2:12330618-12330637 | None:intergenic | 25.0% |
!!! | AAACATTTTTTTTCCTCCTT+TGG | - | chr8_2:12330619-12330638 | None:intergenic | 25.0% |
! | GATTCAATTCCATGAATTAT+TGG | - | chr8_2:12330732-12330751 | None:intergenic | 25.0% |
! | ATTCATGGAATTGAATCAAA+TGG | + | chr8_2:12330735-12330754 | Msa1234690:intron | 25.0% |
!!! | GAAAATGAATTTTGTTTTGC+AGG | + | chr8_2:12330801-12330820 | Msa1234690:intron | 25.0% |
!!! | TTTTGTTTGCTTGTAATTAG+TGG | + | chr8_2:12330916-12330935 | Msa1234690:intron | 25.0% |
!! | AATCAATTTATGGAAAGTAC+AGG | - | chr8_2:12331331-12331350 | None:intergenic | 25.0% |
! | TTATATGTGATACAGGAAAA+TGG | + | chr8_2:12331454-12331473 | Msa1234690:intron | 25.0% |
!! | ATTTGATGATATGTTTCAAG+CGG | + | chr8_2:12331507-12331526 | Msa1234690:CDS | 25.0% |
! | AATTCTACTCAGATGAATTA+TGG | + | chr8_2:12331628-12331647 | Msa1234690:CDS | 25.0% |
! | ATTCTACTCAGATGAATTAT+GGG | + | chr8_2:12331629-12331648 | Msa1234690:CDS | 25.0% |
! | TTGAATGATTGTTTATTGTG+AGG | + | chr8_2:12331805-12331824 | Msa1234690:intron | 25.0% |
! | AGTAGTAACAACAAAAAGAT+AGG | + | chr8_2:12331857-12331876 | Msa1234690:intron | 25.0% |
! | TAACATGTAATTGAGTTATG+GGG | + | chr8_2:12331882-12331901 | Msa1234690:intron | 25.0% |
! | TAATCTATCTTCAGAGTAAT+TGG | - | chr8_2:12332110-12332129 | None:intergenic | 25.0% |
! | TTAAGTGGTTAAGGAAAAAA+TGG | + | chr8_2:12332127-12332146 | Msa1234690:intron | 25.0% |
! | CACTAATTAAAAGACTCATT+GGG | - | chr8_2:12332175-12332194 | None:intergenic | 25.0% |
!!! | TTTTGTTGTTCATGTTATCA+AGG | + | chr8_2:12332202-12332221 | Msa1234690:intron | 25.0% |
! | ATTATCATTACCAATGAATG+AGG | + | chr8_2:12332237-12332256 | Msa1234690:intron | 25.0% |
! | TTTGTACCAAATTCTCAAAT+TGG | - | chr8_2:12332409-12332428 | None:intergenic | 25.0% |
! | AAAGACAGAGAATAATTTGA+TGG | + | chr8_2:12332426-12332445 | Msa1234690:intron | 25.0% |
!!! | TGCAATTTTTTTAGGAAGAT+TGG | + | chr8_2:12332487-12332506 | Msa1234690:intron | 25.0% |
! | AGAAAACAAAAAATCTCATG+TGG | + | chr8_2:12332649-12332668 | Msa1234690:CDS | 25.0% |
! | CATGTACAACTAAAAAGATT+AGG | + | chr8_2:12332793-12332812 | Msa1234690:three_prime_UTR | 25.0% |
! | TGTACAACTAAAAAGATTAG+GGG | + | chr8_2:12332795-12332814 | Msa1234690:three_prime_UTR | 25.0% |
! | TTAGTACTAAAAAGATTAGG+AGG | + | chr8_2:12332840-12332859 | Msa1234690:three_prime_UTR | 25.0% |
!! | ATTAGTCATTTGTTGCATTA+TGG | + | chr8_2:12333028-12333047 | Msa1234690:three_prime_UTR | 25.0% |
TTTAGACTAGATGGAATGAA+GGG | - | chr8_2:12328818-12328837 | None:intergenic | 30.0% | |
! | TTTTAGACTAGATGGAATGA+AGG | - | chr8_2:12328819-12328838 | None:intergenic | 30.0% |
!!! | GCATTTTGTTTTAGACTAGA+TGG | - | chr8_2:12328827-12328846 | None:intergenic | 30.0% |
!! | TGATATTTGATTGGTTCTGT+TGG | + | chr8_2:12329089-12329108 | Msa1234690:five_prime_UTR | 30.0% |
TCTAGTTGGTTGTGAAAATT+TGG | + | chr8_2:12329135-12329154 | Msa1234690:five_prime_UTR | 30.0% | |
GGAAATAATATGGCTAATGA+AGG | + | chr8_2:12329170-12329189 | Msa1234690:exon | 30.0% | |
! | CAATGATTTCTATGCAGTTT+TGG | + | chr8_2:12329202-12329221 | Msa1234690:CDS | 30.0% |
AGAAGCTAAGAAGAAATTTC+AGG | + | chr8_2:12329587-12329606 | Msa1234690:CDS | 30.0% | |
TGCATGTAAATTACCAGAAT+AGG | - | chr8_2:12329625-12329644 | None:intergenic | 30.0% | |
TAATTTGAATCATGGCTCAT+GGG | - | chr8_2:12329697-12329716 | None:intergenic | 30.0% | |
ATAATTTGAATCATGGCTCA+TGG | - | chr8_2:12329698-12329717 | None:intergenic | 30.0% | |
GTTTCAATATTCATTAGGCA+TGG | - | chr8_2:12330014-12330033 | None:intergenic | 30.0% | |
GAAACTGAATTAGGGATATA+AGG | + | chr8_2:12330029-12330048 | Msa1234690:intron | 30.0% | |
GGAGAAGAAAAATAATTGGA+CGG | - | chr8_2:12330524-12330543 | None:intergenic | 30.0% | |
ATATGTTCTTCAAGGTTAGT+AGG | + | chr8_2:12330564-12330583 | Msa1234690:intron | 30.0% | |
TTTGGGAAAAGACATTTGTT+GGG | - | chr8_2:12330601-12330620 | None:intergenic | 30.0% | |
CAATAAGAGCCAATAATTCA+TGG | + | chr8_2:12330720-12330739 | Msa1234690:intron | 30.0% | |
!!! | AATTTTGTTTTGCAGGGTAT+GGG | + | chr8_2:12330808-12330827 | Msa1234690:intron | 30.0% |
TAATTGTTGGAAGGATAAAG+TGG | + | chr8_2:12331235-12331254 | Msa1234690:intron | 30.0% | |
TCATCTACTTTCATGACTTT+CGG | + | chr8_2:12331580-12331599 | Msa1234690:CDS | 30.0% | |
! | AAACAGAAGTTCTGGTAATT+TGG | - | chr8_2:12331682-12331701 | None:intergenic | 30.0% |
! | AATTACCAGAACTTCTGTTT+TGG | + | chr8_2:12331682-12331701 | Msa1234690:CDS | 30.0% |
! | ATTACCAGAACTTCTGTTTT+GGG | + | chr8_2:12331683-12331702 | Msa1234690:CDS | 30.0% |
ATGAATGTTGCATCAAATGA+AGG | - | chr8_2:12331743-12331762 | None:intergenic | 30.0% | |
TTCATTTGATGCAACATTCA+TGG | + | chr8_2:12331742-12331761 | Msa1234690:intron | 30.0% | |
AATCACAACAATTCATGCTT+CGG | - | chr8_2:12332073-12332092 | None:intergenic | 30.0% | |
! | TACTCTGAAGATAGATTAAG+TGG | + | chr8_2:12332112-12332131 | Msa1234690:intron | 30.0% |
GAAGATAGATTAAGTGGTTA+AGG | + | chr8_2:12332118-12332137 | Msa1234690:intron | 30.0% | |
CCACTAATTAAAAGACTCAT+TGG | - | chr8_2:12332176-12332195 | None:intergenic | 30.0% | |
!! | CCAATGAGTCTTTTAATTAG+TGG | + | chr8_2:12332173-12332192 | Msa1234690:intron | 30.0% |
! | TGTTTTGTATCCTCATTCAT+TGG | - | chr8_2:12332250-12332269 | None:intergenic | 30.0% |
TGAATGAGGATACAAAACAA+TGG | + | chr8_2:12332251-12332270 | Msa1234690:intron | 30.0% | |
TCTCCTTACAAAACTAATAG+AGG | + | chr8_2:12332320-12332339 | Msa1234690:intron | 30.0% | |
CTCCTTACAAAACTAATAGA+GGG | + | chr8_2:12332321-12332340 | Msa1234690:intron | 30.0% | |
CACTCCATATATTATATAGC+TGG | + | chr8_2:12332451-12332470 | Msa1234690:intron | 30.0% | |
GAGACCAGCTATATAATATA+TGG | - | chr8_2:12332458-12332477 | None:intergenic | 30.0% | |
GGTAGCAAAAAACAAAGAAA+AGG | + | chr8_2:12332625-12332644 | Msa1234690:CDS | 30.0% | |
TATCAATTAGCAGAAATTCC+AGG | - | chr8_2:12332700-12332719 | None:intergenic | 30.0% | |
GTACAACTAAAAAGATTAGG+GGG | + | chr8_2:12332796-12332815 | Msa1234690:three_prime_UTR | 30.0% | |
AAATGCCTTGGAAAATTTGA+TGG | + | chr8_2:12332867-12332886 | Msa1234690:three_prime_UTR | 30.0% | |
TTAAACTCAAACTCCTAGAT+GGG | - | chr8_2:12332922-12332941 | None:intergenic | 30.0% | |
TTCAACTTGGATGACAACTT+GGG | - | chr8_2:12328888-12328907 | None:intergenic | 35.0% | |
! | TCTGTTGGAGAATTCTAGTT+TGG | + | chr8_2:12329104-12329123 | Msa1234690:five_prime_UTR | 35.0% |
!! | TTGGAGAATTCTAGTTTGGT+TGG | + | chr8_2:12329108-12329127 | Msa1234690:five_prime_UTR | 35.0% |
!!! | TGCAGTTTTGGGATTGAATA+AGG | + | chr8_2:12329214-12329233 | Msa1234690:CDS | 35.0% |
AATGCTCTGATTCAGAACTA+AGG | + | chr8_2:12329237-12329256 | Msa1234690:CDS | 35.0% | |
TGCTTATAAGAAACTTGCAC+TGG | + | chr8_2:12329262-12329281 | Msa1234690:CDS | 35.0% | |
GGTTAGAGTAGAAACAAAGA+CGG | - | chr8_2:12329329-12329348 | None:intergenic | 35.0% | |
! | ACTTTAGAAAAAACGGTGGA+GGG | - | chr8_2:12329353-12329372 | None:intergenic | 35.0% |
! | AACTTTAGAAAAAACGGTGG+AGG | - | chr8_2:12329354-12329373 | None:intergenic | 35.0% |
AAGAGATTAATGTACGACGT+TGG | + | chr8_2:12329789-12329808 | Msa1234690:CDS | 35.0% | |
ATTTCACACCATTCATGAGT+TGG | + | chr8_2:12329854-12329873 | Msa1234690:intron | 35.0% | |
TTTCACACCATTCATGAGTT+GGG | + | chr8_2:12329855-12329874 | Msa1234690:intron | 35.0% | |
! | AAGGATGATTTGATAGTTGG+TGG | + | chr8_2:12330048-12330067 | Msa1234690:intron | 35.0% |
! | AGGATGATTTGATAGTTGGT+GGG | + | chr8_2:12330049-12330068 | Msa1234690:intron | 35.0% |
TTAAAGATCAGAGTGATGAG+CGG | + | chr8_2:12330076-12330095 | Msa1234690:intron | 35.0% | |
TGAGAATGAATTTCCTCTCT+TGG | + | chr8_2:12330154-12330173 | Msa1234690:intron | 35.0% | |
TTGACCATATCATTGTTTCG+TGG | - | chr8_2:12330192-12330211 | None:intergenic | 35.0% | |
TCACTGTCTTCTTTACCTTT+AGG | - | chr8_2:12330332-12330351 | None:intergenic | 35.0% | |
!!! | TCTCTTTTTTCACGTGAAAG+AGG | - | chr8_2:12330545-12330564 | None:intergenic | 35.0% |
! | TTGGGAAAAGACATTTGTTG+GGG | - | chr8_2:12330600-12330619 | None:intergenic | 35.0% |
! | CTTTGGGAAAAGACATTTGT+TGG | - | chr8_2:12330602-12330621 | None:intergenic | 35.0% |
! | CAACAAATGTCTTTTCCCAA+AGG | + | chr8_2:12330600-12330619 | Msa1234690:intron | 35.0% |
TATGTGTCACATAACACATG+TGG | + | chr8_2:12330678-12330697 | Msa1234690:intron | 35.0% | |
CATGGAATTGAATCAAATGG+AGG | + | chr8_2:12330738-12330757 | Msa1234690:intron | 35.0% | |
!!! | GAATTTTGTTTTGCAGGGTA+TGG | + | chr8_2:12330807-12330826 | Msa1234690:intron | 35.0% |
! | GGCTCACATTTGATTTAGTT+TGG | - | chr8_2:12330867-12330886 | None:intergenic | 35.0% |
CTTGTAATTAGTGGAACGTT+AGG | + | chr8_2:12330925-12330944 | Msa1234690:intron | 35.0% | |
AATTAGTGGAACGTTAGGTT+AGG | + | chr8_2:12330930-12330949 | Msa1234690:intron | 35.0% | |
AGGCACAACTACATAGTATT+AGG | - | chr8_2:12331043-12331062 | None:intergenic | 35.0% | |
! | AGTTGTGCCTTTTTACCTTT+TGG | + | chr8_2:12331053-12331072 | Msa1234690:intron | 35.0% |
! | GTTGTGCCTTTTTACCTTTT+GGG | + | chr8_2:12331054-12331073 | Msa1234690:intron | 35.0% |
!!! | CCTTTTTACCTTTTGGGATT+GGG | + | chr8_2:12331060-12331079 | Msa1234690:intron | 35.0% |
ACACCAACTATCATAGCAAT+TGG | - | chr8_2:12331114-12331133 | None:intergenic | 35.0% | |
! | AATTGCTATGATAGTTGGTG+TGG | + | chr8_2:12331113-12331132 | Msa1234690:intron | 35.0% |
GATATGTTTCAAGCGGATAT+CGG | + | chr8_2:12331514-12331533 | Msa1234690:CDS | 35.0% | |
AGTCATGAAAGTAGATGAAG+TGG | - | chr8_2:12331578-12331597 | None:intergenic | 35.0% | |
TACTCAGATGAATTATGGGA+AGG | + | chr8_2:12331633-12331652 | Msa1234690:CDS | 35.0% | |
! | TTACCAGAACTTCTGTTTTG+GGG | + | chr8_2:12331684-12331703 | Msa1234690:CDS | 35.0% |
GGCAAACATATAGCATAGTA+AGG | + | chr8_2:12331763-12331782 | Msa1234690:intron | 35.0% | |
TGTTACTACTTACTACCCAT+AGG | - | chr8_2:12331847-12331866 | None:intergenic | 35.0% | |
TATCTTCAGAGTAATTGGCA+AGG | - | chr8_2:12332105-12332124 | None:intergenic | 35.0% | |
ACAAAACAATGGAGTATGTG+TGG | + | chr8_2:12332262-12332281 | Msa1234690:intron | 35.0% | |
ATGTGTGGAGTATATAGAAG+TGG | + | chr8_2:12332277-12332296 | Msa1234690:intron | 35.0% | |
!! | AGTTTTGTAAGGAGATCACT+AGG | - | chr8_2:12332315-12332334 | None:intergenic | 35.0% |
!!! | GTCCCTCTATTAGTTTTGTA+AGG | - | chr8_2:12332326-12332345 | None:intergenic | 35.0% |
TTGTCAAACGTTTCTCAGAT+TGG | - | chr8_2:12332348-12332367 | None:intergenic | 35.0% | |
CAGAGACCAATTTGAGAATT+TGG | + | chr8_2:12332400-12332419 | Msa1234690:intron | 35.0% | |
CAGTATCAAGTTAAATGCAG+TGG | - | chr8_2:12332514-12332533 | None:intergenic | 35.0% | |
AAGATGTGGAGAAGGAAAAA+GGG | + | chr8_2:12332584-12332603 | Msa1234690:CDS | 35.0% | |
AATTAGCAGAAATTCCAGGA+TGG | - | chr8_2:12332696-12332715 | None:intergenic | 35.0% | |
!! | AACCTTAGCATTTTGGTCAT+GGG | + | chr8_2:12332750-12332769 | Msa1234690:three_prime_UTR | 35.0% |
! | CACTACCATCAAATTTTCCA+AGG | - | chr8_2:12332875-12332894 | None:intergenic | 35.0% |
CTTAAACTCAAACTCCTAGA+TGG | - | chr8_2:12332923-12332942 | None:intergenic | 35.0% | |
!! | AGGTCTCTAGAGTATTCATG+AGG | + | chr8_2:12328773-12328792 | Msa1234690:five_prime_UTR | 40.0% |
CTTCAACTTGGATGACAACT+TGG | - | chr8_2:12328889-12328908 | None:intergenic | 40.0% | |
! | GTTTGGTTGGTTGATCTAGT+TGG | + | chr8_2:12329121-12329140 | Msa1234690:five_prime_UTR | 40.0% |
TTCAGGGAATGTGAAGTTTG+TGG | + | chr8_2:12329563-12329582 | Msa1234690:CDS | 40.0% | |
GCAATTCAAGAAGCCTATTC+TGG | + | chr8_2:12329609-12329628 | Msa1234690:CDS | 40.0% | |
AGGCAAGTGAAAGAGAAAGA+GGG | - | chr8_2:12329882-12329901 | None:intergenic | 40.0% | |
TAGGCAAGTGAAAGAGAAAG+AGG | - | chr8_2:12329883-12329902 | None:intergenic | 40.0% | |
! | GGATGATTTGATAGTTGGTG+GGG | + | chr8_2:12330050-12330069 | Msa1234690:intron | 40.0% |
TAAAGATCAGAGTGATGAGC+GGG | + | chr8_2:12330077-12330096 | Msa1234690:intron | 40.0% | |
GAAGCAAATATGACCAAGAG+AGG | - | chr8_2:12330170-12330189 | None:intergenic | 40.0% | |
GCTTCCACGAAACAATGATA+TGG | + | chr8_2:12330185-12330204 | Msa1234690:intron | 40.0% | |
! | CAAATGTCTTTTCCCAAAGG+AGG | + | chr8_2:12330603-12330622 | Msa1234690:intron | 40.0% |
!!! | GCCTTTTTACCTTTTGGGAT+TGG | + | chr8_2:12331059-12331078 | Msa1234690:intron | 40.0% |
CCCAATCCCAAAAGGTAAAA+AGG | - | chr8_2:12331063-12331082 | None:intergenic | 40.0% | |
TATTAGGACCCAATCCCAAA+AGG | - | chr8_2:12331071-12331090 | None:intergenic | 40.0% | |
GGTCCAATTGCTATGATAGT+TGG | + | chr8_2:12331108-12331127 | Msa1234690:intron | 40.0% | |
GGAAGGATAAAGTGGTTTAC+TGG | + | chr8_2:12331243-12331262 | Msa1234690:intron | 40.0% | |
GATAAAGTGGTTTACTGGAC+CGG | + | chr8_2:12331248-12331267 | Msa1234690:intron | 40.0% | |
ATAAAGTGGTTTACTGGACC+GGG | + | chr8_2:12331249-12331268 | Msa1234690:intron | 40.0% | |
TGTGATACAGGAAAATGGAG+AGG | + | chr8_2:12331459-12331478 | Msa1234690:intron | 40.0% | |
CAAGCGGATATCGGATTAAA+TGG | + | chr8_2:12331523-12331542 | Msa1234690:CDS | 40.0% | |
AAGCACCTCTCTTAATGCTT+CGG | + | chr8_2:12331546-12331565 | Msa1234690:CDS | 40.0% | |
!!! | GCAGAGGATTCTTCTAGTTT+TGG | + | chr8_2:12331655-12331674 | Msa1234690:CDS | 40.0% |
TGTGAGGTCCTTTACTTGTT+TGG | + | chr8_2:12331821-12331840 | Msa1234690:intron | 40.0% | |
TCCTTTACTTGTTTGGCCTA+TGG | + | chr8_2:12331828-12331847 | Msa1234690:intron | 40.0% | |
CCTTTACTTGTTTGGCCTAT+GGG | + | chr8_2:12331829-12331848 | Msa1234690:intron | 40.0% | |
GATGCAACTATTGTAGTCGT+TGG | + | chr8_2:12331986-12332005 | Msa1234690:intron | 40.0% | |
! | AATGCACATTTGTTGGATCC+TGG | - | chr8_2:12332016-12332035 | None:intergenic | 40.0% |
TGCAACGAATGCACATTTGT+TGG | - | chr8_2:12332023-12332042 | None:intergenic | 40.0% | |
ACAACAATTCATGCTTCGGA+TGG | - | chr8_2:12332069-12332088 | None:intergenic | 40.0% | |
GAAGATGTGGAGAAGGAAAA+AGG | + | chr8_2:12332583-12332602 | Msa1234690:CDS | 40.0% | |
AGATGTGGAGAAGGAAAAAG+GGG | + | chr8_2:12332585-12332604 | Msa1234690:CDS | 40.0% | |
GAAAAAGGGGGAATTCTAGA+AGG | + | chr8_2:12332598-12332617 | Msa1234690:CDS | 40.0% | |
AATTCCAGGATGGTCATTAG+AGG | - | chr8_2:12332686-12332705 | None:intergenic | 40.0% | |
! | GTGTGTCAACCTTAGCATTT+TGG | + | chr8_2:12332743-12332762 | Msa1234690:three_prime_UTR | 40.0% |
!! | CAACCTTAGCATTTTGGTCA+TGG | + | chr8_2:12332749-12332768 | Msa1234690:three_prime_UTR | 40.0% |
TTCCCATGACCAAAATGCTA+AGG | - | chr8_2:12332755-12332774 | None:intergenic | 40.0% | |
ATGGGTGTACAATTGCTTGA+AGG | - | chr8_2:12332904-12332923 | None:intergenic | 40.0% | |
AAGCAATTGTACACCCATCT+AGG | + | chr8_2:12332906-12332925 | Msa1234690:three_prime_UTR | 40.0% | |
! | TTGGATGACAACTTGGGTTG+CGG | - | chr8_2:12328882-12328901 | None:intergenic | 45.0% |
TTAGAAAAAACGGTGGAGGG+TGG | - | chr8_2:12329350-12329369 | None:intergenic | 45.0% | |
CAGATCGTTGTTCAGCTTCA+GGG | + | chr8_2:12329547-12329566 | Msa1234690:CDS | 45.0% | |
GGGAGACTTTCTGAACGAAA+TGG | + | chr8_2:12330828-12330847 | Msa1234690:CDS | 45.0% | |
! | TGCTATGATAGTTGGTGTGG+TGG | + | chr8_2:12331116-12331135 | Msa1234690:intron | 45.0% |
! | GCTATGATAGTTGGTGTGGT+GGG | + | chr8_2:12331117-12331136 | Msa1234690:intron | 45.0% |
! | CTATGATAGTTGGTGTGGTG+GGG | + | chr8_2:12331118-12331137 | Msa1234690:intron | 45.0% |
! | TATGATAGTTGGTGTGGTGG+GGG | + | chr8_2:12331119-12331138 | Msa1234690:intron | 45.0% |
! | TGTGGTGGGGGTATATTGTT+GGG | + | chr8_2:12331131-12331150 | Msa1234690:intron | 45.0% |
TATTGTACGAACACACAGCC+CGG | - | chr8_2:12331270-12331289 | None:intergenic | 45.0% | |
AAATGGAGAGGAGAGCTTTG+AGG | + | chr8_2:12331471-12331490 | Msa1234690:CDS | 45.0% | |
AGCACCTCTCTTAATGCTTC+GGG | + | chr8_2:12331547-12331566 | Msa1234690:CDS | 45.0% | |
GATGAATTATGGGAAGGCAG+AGG | + | chr8_2:12331639-12331658 | Msa1234690:CDS | 45.0% | |
TGACCCCAAAACAGAAGTTC+TGG | - | chr8_2:12331690-12331709 | None:intergenic | 45.0% | |
CCCATAGGCCAAACAAGTAA+AGG | - | chr8_2:12331832-12331851 | None:intergenic | 45.0% | |
! | GAAGCACCTTCAAGAAGATG+TGG | + | chr8_2:12332570-12332589 | Msa1234690:CDS | 45.0% |
CCTTCTCCACATCTTCTTGA+AGG | - | chr8_2:12332579-12332598 | None:intergenic | 45.0% | |
CCTTCAAGAAGATGTGGAGA+AGG | + | chr8_2:12332576-12332595 | Msa1234690:CDS | 45.0% | |
GATGTGGAGAAGGAAAAAGG+GGG | + | chr8_2:12332586-12332605 | Msa1234690:CDS | 45.0% | |
! | AAAGGGGGAATTCTAGAAGG+AGG | + | chr8_2:12332601-12332620 | Msa1234690:CDS | 45.0% |
GTTTCCTCTAATGACCATCC+TGG | + | chr8_2:12332679-12332698 | Msa1234690:CDS | 45.0% | |
TTAGGAGGTCACAAATGCCT+TGG | + | chr8_2:12332855-12332874 | Msa1234690:three_prime_UTR | 45.0% | |
!!! | AAATTATATATTTTTTTTCA+TGG | + | chr8_2:12329394-12329413 | Msa1234690:intron | 5.0% |
!!! | TATTATTTGTTTTTATATAT+TGG | + | chr8_2:12329715-12329734 | Msa1234690:intron | 5.0% |
!!! | ATTATTTGTTTTTATATATT+GGG | + | chr8_2:12329716-12329735 | Msa1234690:intron | 5.0% |
CCTGAAGCTGAACAACGATC+TGG | - | chr8_2:12329549-12329568 | None:intergenic | 50.0% | |
CCAGATCGTTGTTCAGCTTC+AGG | + | chr8_2:12329546-12329565 | Msa1234690:CDS | 50.0% | |
AGAGGGTCCCAACTCATGAA+TGG | - | chr8_2:12329865-12329884 | None:intergenic | 50.0% | |
! | GTGTGGTGGGGGTATATTGT+TGG | + | chr8_2:12331130-12331149 | Msa1234690:intron | 50.0% |
! | GTGGTGGGGGTATATTGTTG+GGG | + | chr8_2:12331132-12331151 | Msa1234690:intron | 50.0% |
! | GCAACCCGAAGCATTAAGAG+AGG | - | chr8_2:12331554-12331573 | None:intergenic | 50.0% |
ATTGTAGTCGTTGGATCGCC+AGG | + | chr8_2:12331995-12332014 | Msa1234690:intron | 50.0% | |
ATCCTCGACAACAGCAACAC+TGG | - | chr8_2:12332046-12332065 | None:intergenic | 50.0% | |
! | CACCAGTGTTGCTGTTGTCG+AGG | + | chr8_2:12332041-12332060 | Msa1234690:intron | 55.0% |
! | GGGGGAATTCTAGAAGGAGG+AGG | + | chr8_2:12332604-12332623 | Msa1234690:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_2 | gene | 12328734 | 12333095 | 12328734 | ID=Msa1234690;Name=Msa1234690 |
chr8_2 | mRNA | 12328734 | 12333095 | 12328734 | ID=Msa1234690-mRNA-1;Parent=Msa1234690;Name=Msa1234690-mRNA-1;_AED=0.21;_eAED=0.21;_QI=445|1|1|1|1|1|6|378|237 |
chr8_2 | exon | 12328734 | 12329283 | 12328734 | ID=Msa1234690-mRNA-1:exon:4754;Parent=Msa1234690-mRNA-1 |
chr8_2 | exon | 12329537 | 12329630 | 12329537 | ID=Msa1234690-mRNA-1:exon:4755;Parent=Msa1234690-mRNA-1 |
chr8_2 | exon | 12329772 | 12329842 | 12329772 | ID=Msa1234690-mRNA-1:exon:4756;Parent=Msa1234690-mRNA-1 |
chr8_2 | exon | 12330823 | 12330879 | 12330823 | ID=Msa1234690-mRNA-1:exon:4757;Parent=Msa1234690-mRNA-1 |
chr8_2 | exon | 12331469 | 12331705 | 12331469 | ID=Msa1234690-mRNA-1:exon:4758;Parent=Msa1234690-mRNA-1 |
chr8_2 | exon | 12332568 | 12333095 | 12332568 | ID=Msa1234690-mRNA-1:exon:4759;Parent=Msa1234690-mRNA-1 |
chr8_2 | five_prime_UTR | 12328734 | 12329178 | 12328734 | ID=Msa1234690-mRNA-1:five_prime_utr;Parent=Msa1234690-mRNA-1 |
chr8_2 | CDS | 12329179 | 12329283 | 12329179 | ID=Msa1234690-mRNA-1:cds;Parent=Msa1234690-mRNA-1 |
chr8_2 | CDS | 12329537 | 12329630 | 12329537 | ID=Msa1234690-mRNA-1:cds;Parent=Msa1234690-mRNA-1 |
chr8_2 | CDS | 12329772 | 12329842 | 12329772 | ID=Msa1234690-mRNA-1:cds;Parent=Msa1234690-mRNA-1 |
chr8_2 | CDS | 12330823 | 12330879 | 12330823 | ID=Msa1234690-mRNA-1:cds;Parent=Msa1234690-mRNA-1 |
chr8_2 | CDS | 12331469 | 12331705 | 12331469 | ID=Msa1234690-mRNA-1:cds;Parent=Msa1234690-mRNA-1 |
chr8_2 | CDS | 12332568 | 12332717 | 12332568 | ID=Msa1234690-mRNA-1:cds;Parent=Msa1234690-mRNA-1 |
chr8_2 | three_prime_UTR | 12332718 | 12333095 | 12332718 | ID=Msa1234690-mRNA-1:three_prime_utr;Parent=Msa1234690-mRNA-1 |
Gene Sequence |
Protein sequence |