AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0025070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0025070 MtrunA17_Chr1g0179631 83.699 730 86 6 92 803 164 878 0.0 1143
Msa0025070 MtrunA17_Chr1g0179631 73.243 370 78 4 37 391 1 364 6.99e-130 409
Msa0025070 MtrunA17_Chr3g0086081 33.779 299 168 10 453 735 1 285 6.93e-37 142
Msa0025070 MtrunA17_Chr4g0010341 30.573 157 103 2 441 593 185 339 1.09e-23 105
Msa0025070 MtrunA17_Chr4g0039731 29.719 249 167 4 440 685 165 408 2.38e-18 90.1
Msa0025070 MtrunA17_Chr4g0025081 28.019 207 142 3 438 637 226 432 2.57e-17 85.9
Msa0025070 MtrunA17_Chr1g0176161 24.670 454 280 12 353 769 51 479 7.71e-16 81.6
Msa0025070 MtrunA17_Chr1g0179111 27.843 255 149 9 362 587 145 393 9.80e-16 80.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 254 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATATACATGTAATGGAAAT+TGG 0.167483 1_1:+48081910 None:intergenic
GATATACAAGTAATGGAAAT+TGG 0.185502 1_1:+48081628 None:intergenic
TCACTTGATAGTGGATATTT+TGG 0.205904 1_1:+48081852 None:intergenic
AGGTTTAAAATATCCCTTTC+TGG 0.230565 1_1:+48079522 None:intergenic
GACTGTATGGCAAAGTTTAT+TGG 0.246279 1_1:-48080881 Msa0025070:CDS
CCTTGTGTTCCTTGAAATCC+TGG 0.250219 1_1:+48081477 None:intergenic
TTGTAGAACCTCAACCAAAT+TGG 0.252973 1_1:+48080207 None:intergenic
TAGGGAGTTGGTTCCCAATT+TGG 0.269466 1_1:-48080221 Msa0025070:CDS
GGCCCCTTTCTTGTAGTTGC+CGG 0.273182 1_1:+48080297 None:intergenic
TTGAGGGAAGTTTGTCTTAA+GGG 0.302871 1_1:-48080928 Msa0025070:CDS
TTAGGATGACTAGACTTTAA+TGG 0.313659 1_1:+48081450 None:intergenic
TCGCAAGTGGCGCACTCATC+TGG 0.324352 1_1:-48082480 Msa0025070:CDS
TTGCCCTATCGTCATCATTT+AGG 0.327091 1_1:+48081151 None:intergenic
TTCACAGACTTACCCTTTAG+TGG 0.344824 1_1:+48081329 None:intergenic
ATCTCAGCGTCCGCCTTATC+AGG 0.352764 1_1:-48081424 Msa0025070:CDS
GATACACAGCTGATGAAGTA+TGG 0.355135 1_1:+48082267 None:intergenic
AATGTCAATACTATCACTTC+TGG 0.364657 1_1:-48079583 Msa0025070:three_prime_UTR
AACATCTTTCCCCTTATCAT+TGG 0.367203 1_1:+48082538 None:intergenic
AAAGTAACTCGAGTAGTTTC+TGG 0.368232 1_1:-48081759 Msa0025070:CDS
ACATCTTTCCCCTTATCATT+GGG 0.370025 1_1:+48082539 None:intergenic
AGTAATGGAAATTGGGTAGA+TGG 0.384566 1_1:+48081636 None:intergenic
TACGTGTTGCGTTGTGTTGA+TGG 0.386656 1_1:+48080765 None:intergenic
TTACCTGATTCTTTCTAGAA+TGG 0.393574 1_1:+48080565 None:intergenic
TGTAATGGAAATTGGGTAGA+TGG 0.393624 1_1:+48081918 None:intergenic
GTTGAGGGAAGTTTGTCTTA+AGG 0.396441 1_1:-48080929 Msa0025070:CDS
TTTGAAGGTTCACTTGATAG+TGG 0.397186 1_1:+48081843 None:intergenic
TGTAGAACCTCAACCAAATT+GGG 0.399007 1_1:+48080208 None:intergenic
TATGTAGGTGGTGGATAAAT+AGG 0.400107 1_1:+48082191 None:intergenic
CATGAGTCTTAATATTCCTT+TGG 0.400784 1_1:-48080275 Msa0025070:CDS
ACTAACCCACCCAATGATAA+GGG 0.402555 1_1:-48082548 Msa0025070:CDS
TCACATAATGTCATTGCTAT+TGG 0.405215 1_1:+48078439 None:intergenic
CTAGGTGGACGCTTCTTTGA+AGG 0.409645 1_1:+48081828 None:intergenic
ACCTCGATTCCTTTGAAAAG+AGG 0.410029 1_1:-48079503 Msa0025070:intron
AAGCGTCCACCTAGTGATAA+GGG 0.413682 1_1:-48081819 Msa0025070:CDS
TGACCATTCTAGAAAGAATC+AGG 0.425997 1_1:-48080568 Msa0025070:intron
GGCAAAGTTTATTGGAGCAT+TGG 0.431611 1_1:-48080873 Msa0025070:CDS
GTTATTCAACCTTCCACTAA+AGG 0.432341 1_1:-48081342 Msa0025070:CDS
TTATTCAACCTTCCACTAAA+GGG 0.433677 1_1:-48081341 Msa0025070:intron
ACCACTTGTTCGGGTGTAGT+TGG 0.436086 1_1:-48080352 Msa0025070:CDS
ATATACATGTAATGGAAATT+GGG 0.437628 1_1:+48081911 None:intergenic
GTTCCTTGAAATCCTGGGTT+GGG 0.437913 1_1:+48081483 None:intergenic
TTTAGTGGATATACATGTAA+TGG 0.440301 1_1:+48081903 None:intergenic
ACTCAGATCATGAAGGAAAC+TGG 0.440348 1_1:-48080603 Msa0025070:CDS
AACTAACCCACCCAATGATA+AGG 0.441389 1_1:-48082549 Msa0025070:CDS
TGTTCCTTGAAATCCTGGGT+TGG 0.444757 1_1:+48081482 None:intergenic
TCGTCGGCACAGGTATAAAT+TGG 0.445880 1_1:+48082006 None:intergenic
AGAGGAGTTCAAACGTGAAC+GGG 0.446513 1_1:-48080638 Msa0025070:CDS
GCAGGGTTACAACTCATAGA+TGG 0.450605 1_1:+48080397 None:intergenic
TCATCGGCATAGGTATAAAC+TGG 0.451031 1_1:+48081724 None:intergenic
ATATACAAGTAATGGAAATT+GGG 0.451555 1_1:+48081629 None:intergenic
GACACCCTTCCCCTTACCAC+TGG 0.453777 1_1:+48082088 None:intergenic
CAAGCGGCCACCCAGTGGTA+AGG 0.455295 1_1:-48082099 Msa0025070:CDS
ATGCCCAACCCAGGATTTCA+AGG 0.458880 1_1:-48081486 Msa0025070:CDS
CCACCCGACAATGGATTTGT+AGG 0.461139 1_1:+48082131 None:intergenic
ATTGGATAGGCGAGACTGTA+TGG 0.461345 1_1:-48080894 Msa0025070:CDS
GTTGGTTCCCAATTTGGTTG+AGG 0.463056 1_1:-48080215 Msa0025070:CDS
CTTGTGTTCCTTGAAATCCT+GGG 0.463860 1_1:+48081478 None:intergenic
GGAGGCTGAGTATAGGTATG+AGG 0.464859 1_1:+48081678 None:intergenic
GAAGCGTCCACCTAGTGATA+AGG 0.465742 1_1:-48081820 Msa0025070:CDS
TTCTGATCATGAGTCTACTT+TGG 0.468251 1_1:-48079972 Msa0025070:CDS
GGGATTAACATGTTTGATGA+TGG 0.472319 1_1:-48081372 Msa0025070:CDS
AAACGTGAACGGGCTTCATA+AGG 0.475012 1_1:-48080628 Msa0025070:CDS
GTTCACGTTTGAACTCCTCT+TGG 0.475194 1_1:+48080641 None:intergenic
GGCACAGGTATAAATTGGTC+TGG 0.477208 1_1:+48082011 None:intergenic
TGAGAACTGGTAGGTGGAGG+TGG 0.480811 1_1:+48081945 None:intergenic
CCATCTTGACCAGCCTGATA+AGG 0.480953 1_1:+48081411 None:intergenic
CTGGGTGGCCGCTTGTGTAA+AGG 0.484039 1_1:+48082107 None:intergenic
AACCAACTCCCTACCACTAC+AGG 0.484892 1_1:+48080231 None:intergenic
AGAAACATGGCATCAAAGAA+AGG 0.485403 1_1:-48080811 Msa0025070:CDS
GGGGCAACAACATCCTTAGC+AGG 0.485567 1_1:+48080379 None:intergenic
TGATCATGAGTCTACTTTGG+TGG 0.485914 1_1:-48079969 Msa0025070:CDS
GCTAGAATGACTAGTGGTAA+TGG 0.486198 1_1:+48082061 None:intergenic
CAACTGCACTTTACCAGAAA+GGG 0.486789 1_1:-48079535 Msa0025070:three_prime_UTR
GAAACATGGCATCAAAGAAA+GGG 0.487800 1_1:-48080810 Msa0025070:CDS
CATTCTAGCAAGGTAACTCC+TGG 0.488789 1_1:-48082047 Msa0025070:CDS
TCTTTCCCCTTATCATTGGG+TGG 0.488915 1_1:+48082542 None:intergenic
TTGAAATCCTGGGTTGGGCA+TGG 0.490031 1_1:+48081488 None:intergenic
ATGCCGGCAACTACAAGAAA+GGG 0.492635 1_1:-48080300 Msa0025070:CDS
TGCGGTGGATATACAAGTAA+TGG 0.493457 1_1:+48081621 None:intergenic
CCACCGAAACTTACACCATC+GGG 0.496584 1_1:-48082227 Msa0025070:CDS
GACAATGGATTTGTAGGTGG+TGG 0.498910 1_1:+48082137 None:intergenic
CTTTCCCCTTATCATTGGGT+GGG 0.499770 1_1:+48082543 None:intergenic
TGAGTATAGGTATGAGGAGA+TGG 0.499968 1_1:+48081684 None:intergenic
AACGCAACACGTAACTCAAA+TGG 0.500116 1_1:-48080755 Msa0025070:intron
GATCATGAGTCTACTTTGGT+GGG 0.501918 1_1:-48079968 Msa0025070:CDS
GCCACCCAGTGGTAAGGGGA+AGG 0.502442 1_1:-48082093 Msa0025070:CDS
GAAGTATGGGTAGGTGGAGG+CGG 0.502512 1_1:+48082281 None:intergenic
GGTAGATGGAGATTGAGAAC+TGG 0.505071 1_1:+48081932 None:intergenic
GATATCGCATCCACTACTAA+TGG 0.505243 1_1:-48081792 Msa0025070:CDS
CCACCTACAAATCCATTGTC+GGG 0.509021 1_1:-48082134 Msa0025070:CDS
CAATAGATAAACATGTCATC+AGG 0.512057 1_1:-48082575 Msa0025070:intron
AGCCTGTAGTGGTAGGGAGT+TGG 0.512995 1_1:-48080233 Msa0025070:CDS
GATCAGAAGGTTGGAGGCGG+CGG 0.513611 1_1:+48079987 None:intergenic
ATAGGTATAAACTGGTCTAA+AGG 0.514240 1_1:+48081732 None:intergenic
GGAACATAGGTACGAGGAGA+TGG 0.514609 1_1:+48081966 None:intergenic
TAGACTCATGATCAGAAGGT+TGG 0.515338 1_1:+48079978 None:intergenic
CAAAGGAATATTAAGACTCA+TGG 0.516583 1_1:+48080276 None:intergenic
GTGTAGTTGGAGGTAAGAAA+AGG 0.517698 1_1:-48080339 Msa0025070:CDS
AAAAGCCACAGACAAAATGT+AGG 0.518392 1_1:-48081182 Msa0025070:CDS
CATCGTTAGCCTGTAGTGGT+AGG 0.519129 1_1:-48080240 Msa0025070:CDS
AAGCGGCCACCCAGTGGTAA+GGG 0.520413 1_1:-48082098 Msa0025070:CDS
GGTAGGTGGAGGCTGAGTAT+AGG 0.521908 1_1:+48081671 None:intergenic
TTGCTGAAGAAACGGACAGA+GGG 0.522070 1_1:-48080109 Msa0025070:CDS
ACCACCTACAAATCCATTGT+CGG 0.522590 1_1:-48082135 Msa0025070:CDS
GGAGGCGGCGGTGACGTCCA+TGG 0.522976 1_1:+48079999 None:intergenic
GATGGTGCATATGCATTTAG+TGG 0.525647 1_1:+48081888 None:intergenic
TATCCCGATGGTGTAAGTTT+CGG 0.525804 1_1:+48082224 None:intergenic
GTATCTTTAGTCAGCGGCAT+AGG 0.527229 1_1:+48082428 None:intergenic
CAGCGTCCGCCTTATCAGGC+TGG 0.530739 1_1:-48081420 Msa0025070:CDS
CCACTTGATAGTGGATATGT+AGG 0.532942 1_1:+48081540 None:intergenic
TGTGAAGGTCCACTTGATAG+TGG 0.533328 1_1:+48081531 None:intergenic
ACACCCTTCCCCTTACCACT+GGG 0.533838 1_1:+48082089 None:intergenic
CCACCCAGTGGTAAGGGGAA+GGG 0.534766 1_1:-48082092 Msa0025070:CDS
AAATTATTCGCTCAAGACCA+TGG 0.535708 1_1:-48080016 Msa0025070:CDS
GACTGAGAACGGGTAGGTGG+AGG 0.537395 1_1:+48081660 None:intergenic
TGATAAGGCGGACGCTGAGA+TGG 0.537853 1_1:+48081426 None:intergenic
ACTCGAATTTCCTCGCGAGT+AGG 0.538984 1_1:+48082368 None:intergenic
AACAGTAGGTCTAGTAGTAG+TGG 0.539497 1_1:+48082511 None:intergenic
CTACACCCGAACAAGTGGTA+AGG 0.540049 1_1:+48080356 None:intergenic
GGAGCATATGTACGAGGAGA+TGG 0.541412 1_1:+48082302 None:intergenic
GATGCCGGCAACTACAAGAA+AGG 0.541895 1_1:-48080301 Msa0025070:CDS
AGTGGTAAGGGGAAGGGTGT+CGG 0.543479 1_1:-48082086 Msa0025070:CDS
ATGTTGCATCCACTACTACT+AGG 0.543509 1_1:-48082391 Msa0025070:CDS
CAGACTTACCCTTTAGTGGA+AGG 0.544209 1_1:+48081333 None:intergenic
AATGAGTGGTTGGAAAGTAA+TGG 0.544788 1_1:-48083158 Msa0025070:CDS
GTATGTGCAGTCGTCGGCAC+AGG 0.546385 1_1:+48081996 None:intergenic
ACTTGTTCGGGTGTAGTTGG+AGG 0.547278 1_1:-48080349 Msa0025070:CDS
CCTTATCAGGCTGGTCAAGA+TGG 0.548609 1_1:-48081411 Msa0025070:CDS
GGCGGACGCTGAGATGGCTT+AGG 0.550526 1_1:+48081432 None:intergenic
TCAACTGCACTTTACCAGAA+AGG 0.550910 1_1:-48079536 Msa0025070:three_prime_UTR
GTGACCTAAATGATGACGAT+AGG 0.557016 1_1:-48081155 Msa0025070:CDS
AAGATCCTGTTCGAAAACTA+CGG 0.557292 1_1:-48080165 Msa0025070:CDS
TATGAGTTGTAACCCTGCTA+AGG 0.563576 1_1:-48080392 Msa0025070:CDS
AGCGGCCACCCAGTGGTAAG+GGG 0.566990 1_1:-48082097 Msa0025070:CDS
GGAGATTGAGAACTGGTAGG+TGG 0.567399 1_1:+48081939 None:intergenic
TTTAGTTCCATGCCCAACCC+AGG 0.569175 1_1:-48081495 Msa0025070:CDS
GGTAGATGGAGACTGAGAAC+GGG 0.569951 1_1:+48081650 None:intergenic
GGCAATCAAGACGTTGATGT+TGG 0.570273 1_1:-48079947 Msa0025070:CDS
TCCAACTACACCCGAACAAG+TGG 0.570300 1_1:+48080351 None:intergenic
GGGTAGATGGAGACTGAGAA+CGG 0.570642 1_1:+48081649 None:intergenic
AAATACAGGAGAAGTGTACA+TGG 0.571389 1_1:-48081020 Msa0025070:intron
GGTCAGTGCCCACATTGGAT+AGG 0.573158 1_1:-48080907 Msa0025070:CDS
CCCGATGGTGTAAGTTTCGG+TGG 0.573397 1_1:+48082227 None:intergenic
GTCTGTGTATGTGCAGTCGT+GGG 0.574424 1_1:+48082326 None:intergenic
ATCGTTAGCCTGTAGTGGTA+GGG 0.576808 1_1:-48080239 Msa0025070:CDS
AGCTGGTCTAAAACATGTTG+AGG 0.579381 1_1:+48082455 None:intergenic
TACACCCGAACAAGTGGTAA+GGG 0.579884 1_1:+48080357 None:intergenic
ACTCATGATCAGAAGGTTGG+AGG 0.581322 1_1:+48079981 None:intergenic
TGTAAAGGTCCACCCGACAA+TGG 0.581837 1_1:+48082122 None:intergenic
AAAGCCACAGACAAAATGTA+GGG 0.582116 1_1:-48081181 Msa0025070:CDS
ACCGCATACATATGCACCAC+CGG 0.582783 1_1:-48081604 Msa0025070:CDS
TTTGGCAGTGCGTATGTCGA+TGG 0.583317 1_1:+48081870 None:intergenic
ACCACCGAAACTTACACCAT+CGG 0.584439 1_1:-48082228 Msa0025070:CDS
TATGTAGGTGTTGGATATGT+CGG 0.584602 1_1:+48081555 None:intergenic
CACCCGAACAAGTGGTAAGG+GGG 0.585944 1_1:+48080359 None:intergenic
TGACCTAAATGATGACGATA+GGG 0.586015 1_1:-48081154 Msa0025070:CDS
TCTCGGAGGAAATGAGTGGT+TGG 0.586798 1_1:-48083168 None:intergenic
TGACTTGTCTGATATGTTGA+GGG 0.587957 1_1:-48080944 Msa0025070:CDS
ACATCATGCATATGCTCCAT+CGG 0.589782 1_1:-48082165 Msa0025070:CDS
GTATGTGCAGTCATCGGCAT+AGG 0.589843 1_1:+48081714 None:intergenic
AAGAGGAGTTCAAACGTGAA+CGG 0.590882 1_1:-48080639 Msa0025070:CDS
CCAGGATTTCAAGGAACACA+AGG 0.592183 1_1:-48081477 Msa0025070:CDS
GCGAGTAGGCCTAGTAGTAG+TGG 0.592919 1_1:+48082382 None:intergenic
GTCGGCGGTGCGGATGTCGA+CGG 0.593551 1_1:+48081573 None:intergenic
TACTACTAGGCCTACTCGCG+AGG 0.593671 1_1:-48082378 Msa0025070:CDS
GGTGGTGCATATGCATGTTG+TGG 0.593870 1_1:+48082245 None:intergenic
TGATGTGAATATGTAGGTGG+TGG 0.594089 1_1:+48082182 None:intergenic
ATACACAGCTGATGAAGTAT+GGG 0.598166 1_1:+48082268 None:intergenic
GTAGGTGGTGGATTCACCGA+TGG 0.598426 1_1:+48082149 None:intergenic
CCACAGACAAAATGTAGGGA+TGG 0.598675 1_1:-48081177 Msa0025070:CDS
GGTAGGTGGAGGTGGAACAT+AGG 0.598829 1_1:+48081953 None:intergenic
AAAGTAGACTCATGATCAGA+AGG 0.598945 1_1:+48079974 None:intergenic
CTGTTGAGCGTACTCGCAAG+TGG 0.599569 1_1:-48082493 Msa0025070:CDS
CGGGTGGACCTTTACACAAG+CGG 0.600983 1_1:-48082115 Msa0025070:CDS
TCTGGAGAACTAGAAACTCC+AGG 0.601740 1_1:+48082029 None:intergenic
GGGGAAAGCCTACAGAAAAG+AGG 0.602123 1_1:-48080790 Msa0025070:CDS
GGAGACTGAGAACGGGTAGG+TGG 0.602886 1_1:+48081657 None:intergenic
AGATGGCATTCATGATGCTG+AGG 0.604447 1_1:-48081394 Msa0025070:CDS
TCAGCGGCATAGGTACAAGC+TGG 0.604900 1_1:+48082438 None:intergenic
CTGACTAAAGATACACAGAC+GGG 0.607010 1_1:-48082419 Msa0025070:CDS
GTATGTGCAGTCGTGGGCAT+AGG 0.609019 1_1:+48082332 None:intergenic
GTAGGTGGTGGATAAATAGG+TGG 0.609496 1_1:+48082194 None:intergenic
GATGGCATTCATGATGCTGA+GGG 0.610481 1_1:-48081393 Msa0025070:CDS
GCTGATGAAGTATGGGTAGG+TGG 0.612690 1_1:+48082275 None:intergenic
GATTGAGAACTGGTAGGTGG+AGG 0.613125 1_1:+48081942 None:intergenic
CATGATCAGAAGGTTGGAGG+CGG 0.613383 1_1:+48079984 None:intergenic
CCTACATATCCACTATCAAG+TGG 0.613583 1_1:-48081540 Msa0025070:CDS
GTTTGTGTATGTGCAGTCAT+CGG 0.614271 1_1:+48081708 None:intergenic
GTCTGTGTATCTTTAGTCAG+CGG 0.615011 1_1:+48082422 None:intergenic
AGTCGCTTATATGATGATGC+CGG 0.615837 1_1:-48080316 Msa0025070:CDS
AGCGTCCACCTAGTGATAAG+GGG 0.616167 1_1:-48081818 Msa0025070:CDS
TTGGTGCCGATGATGAATGA+TGG 0.617362 1_1:-48079928 Msa0025070:intron
AGTCTGTGTATGTGCAGTCG+TGG 0.617498 1_1:+48082325 None:intergenic
GATAGTGGATATGTAGGTGT+TGG 0.619025 1_1:+48081546 None:intergenic
GAAGCACCATCATTCATCAT+CGG 0.619327 1_1:+48079922 None:intergenic
TATGCATGATGTGAATATGT+AGG 0.619505 1_1:+48082176 None:intergenic
ACAGTCTCGCCTATCCAATG+TGG 0.619509 1_1:+48080898 None:intergenic
GATGCTCTTGCATTATCCAA+AGG 0.620366 1_1:+48080259 None:intergenic
ATCTGTGTATGTGCAGTCGT+CGG 0.624063 1_1:+48081990 None:intergenic
TAAGGATACTCAGATCATGA+AGG 0.624522 1_1:-48080610 Msa0025070:CDS
GATGAAGTATGGGTAGGTGG+AGG 0.627193 1_1:+48082278 None:intergenic
TACCACTAGTCATTCTAGCA+AGG 0.630639 1_1:-48082057 Msa0025070:CDS
ACACCCGAACAAGTGGTAAG+GGG 0.633338 1_1:+48080358 None:intergenic
AGAGCATCGTTAGCCTGTAG+TGG 0.637169 1_1:-48080244 Msa0025070:CDS
GCGAGAACGACCATTAGTAG+TGG 0.637821 1_1:+48081782 None:intergenic
CAGTCTCGCCTATCCAATGT+GGG 0.638006 1_1:+48080899 None:intergenic
AAACATGGCATCAAAGAAAG+GGG 0.640330 1_1:-48080809 Msa0025070:CDS
TCTTGACCAGCCTGATAAGG+CGG 0.640440 1_1:+48081414 None:intergenic
CTAACCCACCCAATGATAAG+GGG 0.640535 1_1:-48082547 Msa0025070:CDS
CCCGACAATGGATTTGTAGG+TGG 0.641838 1_1:+48082134 None:intergenic
TATAGACTAAGAAGTCCAAG+AGG 0.643321 1_1:-48080656 Msa0025070:intron
TCACTAACAAAATTACAAGA+CGG 0.643632 1_1:+48078401 None:intergenic
TTGCGAGTACGCTCAACAGT+AGG 0.645839 1_1:+48082497 None:intergenic
GATGGAGATTGAGAACTGGT+AGG 0.646075 1_1:+48081936 None:intergenic
TACCTTGCTAGAATGACTAG+TGG 0.646973 1_1:+48082055 None:intergenic
TTAAGGGTCAGTGCCCACAT+TGG 0.648200 1_1:-48080912 Msa0025070:CDS
CCCTTCCCCTTACCACTGGG+TGG 0.654508 1_1:+48082092 None:intergenic
GTGACTTGTCTGATATGTTG+AGG 0.654751 1_1:-48080945 Msa0025070:CDS
TGCTGAAGAAACGGACAGAG+GGG 0.654920 1_1:-48080108 Msa0025070:CDS
GCTGACTAAAGATACACAGA+CGG 0.660781 1_1:-48082420 Msa0025070:CDS
AATAGCAATGACATTATGTG+AGG 0.662671 1_1:-48078437 Msa0025070:three_prime_UTR
GCGTCCACCTAGTGATAAGG+GGG 0.664476 1_1:-48081817 Msa0025070:CDS
ATCAAGTGGACCTTCACACA+AGG 0.664485 1_1:-48081526 Msa0025070:CDS
TTTGTCTCGGAGGAAATGAG+TGG 0.664898 1_1:-48083172 None:intergenic
ACAGCTGATGAAGTATGGGT+AGG 0.665045 1_1:+48082272 None:intergenic
GTCGACGGTGTATACGCCGG+TGG 0.665297 1_1:+48081588 None:intergenic
TATAGGAGAAGTGTGAGGCG+AGG 0.665947 1_1:-48080456 Msa0025070:intron
ACCCGAACAAGTGGTAAGGG+GGG 0.667715 1_1:+48080360 None:intergenic
TAGATAAACATGTCATCAGG+AGG 0.668522 1_1:-48082572 Msa0025070:CDS
AAAGATTATGAATTCGCAGG+GGG 0.672074 1_1:-48080134 Msa0025070:CDS
GGGCAACAACATCCTTAGCA+GGG 0.676632 1_1:+48080380 None:intergenic
GATGTCGACGGTGTATACGC+CGG 0.677914 1_1:+48081585 None:intergenic
TTGGGCATGGAACTAAATTG+TGG 0.681887 1_1:+48081501 None:intergenic
TGCCAGAGAAAAGAGAAACA+TGG 0.684012 1_1:-48080824 Msa0025070:CDS
TGCCGGCAACTACAAGAAAG+GGG 0.684243 1_1:-48080299 Msa0025070:CDS
ATAGGTCAACTGAAAACTAG+CGG 0.685932 1_1:+48080846 None:intergenic
GGTGGCAGTGTGTATCCCGA+TGG 0.687025 1_1:+48082212 None:intergenic
GATGGAGACTGAGAACGGGT+AGG 0.689290 1_1:+48081654 None:intergenic
TTCATTATAGGAGAAGTGTG+AGG 0.694705 1_1:-48080461 Msa0025070:intron
ATTGCTGAAGAAACGGACAG+AGG 0.696753 1_1:-48080110 Msa0025070:CDS
CCTACAAATCCATTGTCGGG+TGG 0.698994 1_1:-48082131 Msa0025070:CDS
AATTGTGGTACCTTGTGTGA+AGG 0.703679 1_1:+48081516 None:intergenic
AAAAGATTATGAATTCGCAG+GGG 0.706642 1_1:-48080135 Msa0025070:CDS
GCATGATGTGAATATGTAGG+TGG 0.708116 1_1:+48082179 None:intergenic
CATATCAGACAAGTCACGCG+AGG 0.709129 1_1:+48080951 None:intergenic
TTACACAAGCGGCCACCCAG+TGG 0.712688 1_1:-48082104 Msa0025070:CDS
ATGGCATTCATGATGCTGAG+GGG 0.723530 1_1:-48081392 Msa0025070:CDS
GTAGGTGTTGGATATGTCGG+CGG 0.725546 1_1:+48081558 None:intergenic
GGTGGTGCATATGTATGCGG+TGG 0.727513 1_1:+48081606 None:intergenic
GCCGGTGGTGCATATGTATG+CGG 0.731075 1_1:+48081603 None:intergenic
TGTTGGATATGTCGGCGGTG+CGG 0.734289 1_1:+48081563 None:intergenic
GGAGGTGGAACATAGGTACG+AGG 0.741556 1_1:+48081960 None:intergenic
GGAGGCGGAGCATATGTACG+AGG 0.748386 1_1:+48082296 None:intergenic
TGACTAAAGATACACAGACG+GGG 0.766798 1_1:-48082418 Msa0025070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATATAAACATTTTATG+AGG - chr1_1:48078611-48078630 Msa0025070:intron 10.0%
!! TTATGTTATATAAAAAATAC+AGG - chr1_1:48080529-48080548 Msa0025070:intron 10.0%
!!! TTTTATCTTTTTTCTCATTT+TGG - chr1_1:48078891-48078910 Msa0025070:intron 15.0%
!!! TTTGTATTGATTTATTAACA+TGG - chr1_1:48080289-48080308 Msa0025070:CDS 15.0%
!!! TAGTTCTTCTTTATTTATTT+TGG - chr1_1:48080844-48080863 Msa0025070:CDS 15.0%
!!! AGTTCTTCTTTATTTATTTT+GGG - chr1_1:48080845-48080864 Msa0025070:CDS 15.0%
!! GTTTCAAAAAATTATCATTA+TGG - chr1_1:48082170-48082189 Msa0025070:CDS 15.0%
!! AAAAGAATTTAAAAAGAGAA+CGG - chr1_1:48082567-48082586 Msa0025070:CDS 15.0%
!!! ATATACATGTAATGGAAATT+GGG + chr1_1:48079655-48079674 None:intergenic 20.0%
!!! ATATACAAGTAATGGAAATT+GGG + chr1_1:48079937-48079956 None:intergenic 20.0%
!! TTATTAACATGGTATTGTTA+AGG - chr1_1:48080300-48080319 Msa0025070:CDS 20.0%
!! AAATAAAGAAGAACTAGTTA+AGG + chr1_1:48080840-48080859 None:intergenic 20.0%
!! TTTGTATGGTTATTCATTAT+AGG - chr1_1:48081090-48081109 Msa0025070:intron 20.0%
!!! TTGTCTTGTTTATGTTTTTT+TGG - chr1_1:48081678-48081697 Msa0025070:CDS 20.0%
!!! TGTTTTGAATGTTATACTTA+TGG + chr1_1:48082200-48082219 None:intergenic 20.0%
!! TTAAACAGAAATATGAACTT+AGG - chr1_1:48082313-48082332 Msa0025070:CDS 20.0%
!!! AATGAGTTTTTTTAAGTGAT+AGG - chr1_1:48082384-48082403 Msa0025070:CDS 20.0%
!!! AATGTTTTTTGTACAACTAA+AGG - chr1_1:48082448-48082467 Msa0025070:CDS 20.0%
!! AATTGGATCTCTTATTTGAA+TGG - chr1_1:48078777-48078796 Msa0025070:intron 25.0%
!! ATTGGATCTCTTATTTGAAT+GGG - chr1_1:48078778-48078797 Msa0025070:intron 25.0%
!!! TATCTTTTTTCTCATTTTGG+TGG - chr1_1:48078894-48078913 Msa0025070:intron 25.0%
!! GATATACATGTAATGGAAAT+TGG + chr1_1:48079656-48079675 None:intergenic 25.0%
!! TTTAGTGGATATACATGTAA+TGG + chr1_1:48079663-48079682 None:intergenic 25.0%
!! GATATACAAGTAATGGAAAT+TGG + chr1_1:48079938-48079957 None:intergenic 25.0%
!!! TTGTTATTTGACTCTTTGTA+TGG - chr1_1:48081076-48081095 Msa0025070:intron 25.0%
! AAAAAAGATTATGAATTCGC+AGG - chr1_1:48081426-48081445 Msa0025070:CDS 25.0%
! AAAAAGATTATGAATTCGCA+GGG - chr1_1:48081427-48081446 Msa0025070:CDS 25.0%
!!! TTTCAGGTTTGGTATAATTT+TGG + chr1_1:48081809-48081828 None:intergenic 25.0%
! AAATTATACCAAACCTGAAA+TGG - chr1_1:48081809-48081828 Msa0025070:CDS 25.0%
! AATTATACCAAACCTGAAAT+GGG - chr1_1:48081810-48081829 Msa0025070:CDS 25.0%
!! GTTAGTTGTGAACATTTTAA+CGG + chr1_1:48081849-48081868 None:intergenic 25.0%
! TTAAAATGTTCACAACTAAC+TGG - chr1_1:48081849-48081868 Msa0025070:CDS 25.0%
! AATGACAATAATTAGATGTC+AGG + chr1_1:48081898-48081917 None:intergenic 25.0%
! TTGAATGTTATACTTATGGA+TGG + chr1_1:48082196-48082215 None:intergenic 25.0%
!!! TAGTTTTGTTTATGTGAAGT+AGG + chr1_1:48082414-48082433 None:intergenic 25.0%
!! ATAGAAGTTTAAAGTAGCTT+TGG + chr1_1:48082517-48082536 None:intergenic 25.0%
! AACTTCTATTCTCTGATTAA+TGG - chr1_1:48082528-48082547 Msa0025070:CDS 25.0%
! TACAAAATATCGTCAAACAA+CGG + chr1_1:48083017-48083036 None:intergenic 25.0%
! TCTTCAAATTTCATTATGCT+AGG - chr1_1:48083068-48083087 Msa0025070:intron 25.0%
!! TAGGTTTTTGTAAACATGAA+GGG - chr1_1:48083087-48083106 Msa0025070:CDS 25.0%
AAAACTCGTCGGAAAAATTT+AGG - chr1_1:48078485-48078504 Msa0025070:intron 30.0%
AAACTCGTCGGAAAAATTTA+GGG - chr1_1:48078486-48078505 Msa0025070:intron 30.0%
TGTTGGGGATGAATTTATAA+AGG + chr1_1:48078516-48078535 None:intergenic 30.0%
GAAGTTCATATGTATCAATG+TGG - chr1_1:48078688-48078707 Msa0025070:intron 30.0%
TCTCAAGTTACAAAGACAAT+TGG - chr1_1:48078760-48078779 Msa0025070:intron 30.0%
! TTGGATCTCTTATTTGAATG+GGG - chr1_1:48078779-48078798 Msa0025070:intron 30.0%
CAATAGATAAACATGTCATC+AGG - chr1_1:48078988-48079007 Msa0025070:intron 30.0%
TATGCATGATGTGAATATGT+AGG + chr1_1:48079390-48079409 None:intergenic 30.0%
!!! TCACTTGATAGTGGATATTT+TGG + chr1_1:48079714-48079733 None:intergenic 30.0%
! ATAGGTATAAACTGGTCTAA+AGG + chr1_1:48079834-48079853 None:intergenic 30.0%
TTAGGATGACTAGACTTTAA+TGG + chr1_1:48080116-48080135 None:intergenic 30.0%
TTATTCAACCTTCCACTAAA+GGG - chr1_1:48080222-48080241 Msa0025070:CDS 30.0%
! TTACCTGATTCTTTCTAGAA+TGG + chr1_1:48081001-48081020 None:intergenic 30.0%
CAAAGGAATATTAAGACTCA+TGG + chr1_1:48081290-48081309 None:intergenic 30.0%
CATGAGTCTTAATATTCCTT+TGG - chr1_1:48081288-48081307 Msa0025070:intron 30.0%
AAAAGATTATGAATTCGCAG+GGG - chr1_1:48081428-48081447 Msa0025070:CDS 30.0%
!! TTATGCCATCATTTTTCAGA+TGG + chr1_1:48081759-48081778 None:intergenic 30.0%
ATTATACCAAACCTGAAATG+GGG - chr1_1:48081811-48081830 Msa0025070:CDS 30.0%
AATGTCAATACTATCACTTC+TGG - chr1_1:48081980-48081999 Msa0025070:CDS 30.0%
! AGGTTTAAAATATCCCTTTC+TGG + chr1_1:48082044-48082063 None:intergenic 30.0%
! ATTAACTGACCTCTTTTCAA+AGG + chr1_1:48082072-48082091 None:intergenic 30.0%
AGTGACAAAACTGCATTATT+TGG - chr1_1:48082249-48082268 Msa0025070:CDS 30.0%
TGTACAACTAAAGGATGATA+AGG - chr1_1:48082457-48082476 Msa0025070:CDS 30.0%
!! AGAATGAGTTTGCTGAATAA+TGG - chr1_1:48082627-48082646 Msa0025070:intron 30.0%
TAGACTTGTAGTAAATGCAA+AGG + chr1_1:48082682-48082701 None:intergenic 30.0%
! GAATAACAAGACTTTTGCTT+TGG + chr1_1:48082772-48082791 None:intergenic 30.0%
! CATGAAAGCATGATTAGAAT+CGG + chr1_1:48082794-48082813 None:intergenic 30.0%
ATGCTTTCATGTATTCTTCT+TGG - chr1_1:48082803-48082822 Msa0025070:intron 30.0%
ATACTAACCTACTTTGTGTA+GGG + chr1_1:48082920-48082939 None:intergenic 30.0%
AATACTAACCTACTTTGTGT+AGG + chr1_1:48082921-48082940 None:intergenic 30.0%
CTACTATGTTATAGTGCTAT+AGG - chr1_1:48082980-48082999 Msa0025070:intron 30.0%
! CTAGGTTTTTGTAAACATGA+AGG - chr1_1:48083086-48083105 Msa0025070:CDS 30.0%
TCACATAATGTCATTGCTAT+TGG + chr1_1:48083127-48083146 None:intergenic 30.0%
AATAGCAATGACATTATGTG+AGG - chr1_1:48083126-48083145 Msa0025070:CDS 30.0%
! AGGAAGAAAAAATGGTGTTG+GGG + chr1_1:48078531-48078550 None:intergenic 35.0%
GAGGAAGAAAAAATGGTGTT+GGG + chr1_1:48078532-48078551 None:intergenic 35.0%
AGAGGAAGAAAAAATGGTGT+TGG + chr1_1:48078533-48078552 None:intergenic 35.0%
TGAGAGAGAGGAAGAAAAAA+TGG + chr1_1:48078539-48078558 None:intergenic 35.0%
TAGATAAACATGTCATCAGG+AGG - chr1_1:48078991-48079010 Msa0025070:intron 35.0%
ACATCTTTCCCCTTATCATT+GGG + chr1_1:48079027-48079046 None:intergenic 35.0%
AACATCTTTCCCCTTATCAT+TGG + chr1_1:48079028-48079047 None:intergenic 35.0%
ATACACAGCTGATGAAGTAT+GGG + chr1_1:48079298-48079317 None:intergenic 35.0%
!! TATGTAGGTGGTGGATAAAT+AGG + chr1_1:48079375-48079394 None:intergenic 35.0%
! TGTAATGGAAATTGGGTAGA+TGG + chr1_1:48079648-48079667 None:intergenic 35.0%
TTTGAAGGTTCACTTGATAG+TGG + chr1_1:48079723-48079742 None:intergenic 35.0%
AAAGTAACTCGAGTAGTTTC+TGG - chr1_1:48079804-48079823 Msa0025070:intron 35.0%
! AGTAATGGAAATTGGGTAGA+TGG + chr1_1:48079930-48079949 None:intergenic 35.0%
!! TATGTAGGTGTTGGATATGT+CGG + chr1_1:48080011-48080030 None:intergenic 35.0%
GGGATTAACATGTTTGATGA+TGG - chr1_1:48080191-48080210 Msa0025070:CDS 35.0%
GTTATTCAACCTTCCACTAA+AGG - chr1_1:48080221-48080240 Msa0025070:CDS 35.0%
! TGTCTGTGGCTTTTTATGTT+GGG + chr1_1:48080375-48080394 None:intergenic 35.0%
! TTGTCTGTGGCTTTTTATGT+TGG + chr1_1:48080376-48080395 None:intergenic 35.0%
AAAAGCCACAGACAAAATGT+AGG - chr1_1:48080381-48080400 Msa0025070:CDS 35.0%
AAAGCCACAGACAAAATGTA+GGG - chr1_1:48080382-48080401 Msa0025070:CDS 35.0%
! TGACCTAAATGATGACGATA+GGG - chr1_1:48080409-48080428 Msa0025070:CDS 35.0%
CGATAGGGCAAAAAAATTCA+AGG - chr1_1:48080424-48080443 Msa0025070:CDS 35.0%
! AAATACAGGAGAAGTGTACA+TGG - chr1_1:48080543-48080562 Msa0025070:intron 35.0%
! TGACTTGTCTGATATGTTGA+GGG - chr1_1:48080619-48080638 Msa0025070:CDS 35.0%
TTGAGGGAAGTTTGTCTTAA+GGG - chr1_1:48080635-48080654 Msa0025070:CDS 35.0%
GACTGTATGGCAAAGTTTAT+TGG - chr1_1:48080682-48080701 Msa0025070:intron 35.0%
ATAGGTCAACTGAAAACTAG+CGG + chr1_1:48080720-48080739 None:intergenic 35.0%
AGAAACATGGCATCAAAGAA+AGG - chr1_1:48080752-48080771 Msa0025070:intron 35.0%
GAAACATGGCATCAAAGAAA+GGG - chr1_1:48080753-48080772 Msa0025070:intron 35.0%
AAACATGGCATCAAAGAAAG+GGG - chr1_1:48080754-48080773 Msa0025070:intron 35.0%
TATAGACTAAGAAGTCCAAG+AGG - chr1_1:48080907-48080926 Msa0025070:CDS 35.0%
TAAGGATACTCAGATCATGA+AGG - chr1_1:48080953-48080972 Msa0025070:CDS 35.0%
! TGACCATTCTAGAAAGAATC+AGG - chr1_1:48080995-48081014 Msa0025070:CDS 35.0%
! TTCATTATAGGAGAAGTGTG+AGG - chr1_1:48081102-48081121 Msa0025070:intron 35.0%
TGTAGAACCTCAACCAAATT+GGG + chr1_1:48081358-48081377 None:intergenic 35.0%
TTGTAGAACCTCAACCAAAT+TGG + chr1_1:48081359-48081378 None:intergenic 35.0%
AAGATCCTGTTCGAAAACTA+CGG - chr1_1:48081398-48081417 Msa0025070:CDS 35.0%
AAAGATTATGAATTCGCAGG+GGG - chr1_1:48081429-48081448 Msa0025070:CDS 35.0%
ACGTCTGCAAAAAATGAAAG+AGG - chr1_1:48081495-48081514 Msa0025070:CDS 35.0%
AAATTATTCGCTCAAGACCA+TGG - chr1_1:48081547-48081566 Msa0025070:CDS 35.0%
AAAGTAGACTCATGATCAGA+AGG + chr1_1:48081592-48081611 None:intergenic 35.0%
TTCTGATCATGAGTCTACTT+TGG - chr1_1:48081591-48081610 Msa0025070:CDS 35.0%
!! ATCATTTTTCAGATGGAAGG+GGG + chr1_1:48081752-48081771 None:intergenic 35.0%
!! CATCATTTTTCAGATGGAAG+GGG + chr1_1:48081753-48081772 None:intergenic 35.0%
!! CCATCATTTTTCAGATGGAA+GGG + chr1_1:48081754-48081773 None:intergenic 35.0%
TTATACCAAACCTGAAATGG+GGG - chr1_1:48081812-48081831 Msa0025070:CDS 35.0%
!! CTCAACTCTAAAATCATCTC+AGG - chr1_1:48081936-48081955 Msa0025070:CDS 35.0%
AATCATCTCAGGTGTCAAAT+TGG - chr1_1:48081947-48081966 Msa0025070:CDS 35.0%
! GTTTTTGTAAACATGAAGGG+TGG - chr1_1:48083090-48083109 Msa0025070:CDS 35.0%
!! GGCATTTTCATTTTTGCGAG+GGG + chr1_1:48078451-48078470 None:intergenic 40.0%
!! GGGCATTTTCATTTTTGCGA+GGG + chr1_1:48078452-48078471 None:intergenic 40.0%
GCAAAAATGAAAATGCCCCT+CGG - chr1_1:48078454-48078473 Msa0025070:three_prime_UTR 40.0%
!! TAGTACTGACCAGTGAATGA+CGG + chr1_1:48078587-48078606 None:intergenic 40.0%
GTAACTTGAGACAAGCTCAT+GGG + chr1_1:48078751-48078770 None:intergenic 40.0%
TGTAACTTGAGACAAGCTCA+TGG + chr1_1:48078752-48078771 None:intergenic 40.0%
! AGCTGACAGTACTAGGTTTT+GGG + chr1_1:48078808-48078827 None:intergenic 40.0%
! TAGCTGACAGTACTAGGTTT+TGG + chr1_1:48078809-48078828 None:intergenic 40.0%
GATAGATAGCTGACAGTACT+AGG + chr1_1:48078815-48078834 None:intergenic 40.0%
AACTAACCCACCCAATGATA+AGG - chr1_1:48079014-48079033 Msa0025070:intron 40.0%
ACTAACCCACCCAATGATAA+GGG - chr1_1:48079015-48079034 Msa0025070:intron 40.0%
AACAGTAGGTCTAGTAGTAG+TGG + chr1_1:48079055-48079074 None:intergenic 40.0%
! AGCTGGTCTAAAACATGTTG+AGG + chr1_1:48079111-48079130 None:intergenic 40.0%
GTCTGTGTATCTTTAGTCAG+CGG + chr1_1:48079144-48079163 None:intergenic 40.0%
GCTGACTAAAGATACACAGA+CGG - chr1_1:48079143-48079162 Msa0025070:intron 40.0%
CTGACTAAAGATACACAGAC+GGG - chr1_1:48079144-48079163 Msa0025070:intron 40.0%
TGACTAAAGATACACAGACG+GGG - chr1_1:48079145-48079164 Msa0025070:intron 40.0%
ATGTTGCATCCACTACTACT+AGG - chr1_1:48079043-48079062 Msa0025070:intron 40.0%
GATACACAGCTGATGAAGTA+TGG + chr1_1:48079299-48079318 None:intergenic 40.0%
TATCCCGATGGTGTAAGTTT+CGG + chr1_1:48079342-48079361 None:intergenic 40.0%
TGATGTGAATATGTAGGTGG+TGG + chr1_1:48079384-48079403 None:intergenic 40.0%
GCATGATGTGAATATGTAGG+TGG + chr1_1:48079387-48079406 None:intergenic 40.0%
ACATCATGCATATGCTCCAT+CGG - chr1_1:48079398-48079417 Msa0025070:intron 40.0%
ACCACCTACAAATCCATTGT+CGG - chr1_1:48079428-48079447 Msa0025070:intron 40.0%
GCTAGAATGACTAGTGGTAA+TGG + chr1_1:48079505-48079524 None:intergenic 40.0%
TACCACTAGTCATTCTAGCA+AGG - chr1_1:48079506-48079525 Msa0025070:three_prime_UTR 40.0%
TACCTTGCTAGAATGACTAG+TGG + chr1_1:48079511-48079530 None:intergenic 40.0%
GATGGTGCATATGCATTTAG+TGG + chr1_1:48079678-48079697 None:intergenic 40.0%
GATATCGCATCCACTACTAA+TGG - chr1_1:48079771-48079790 Msa0025070:intron 40.0%
TCATCGGCATAGGTATAAAC+TGG + chr1_1:48079842-48079861 None:intergenic 40.0%
GTTTGTGTATGTGCAGTCAT+CGG + chr1_1:48079858-48079877 None:intergenic 40.0%
TGAGTATAGGTATGAGGAGA+TGG + chr1_1:48079882-48079901 None:intergenic 40.0%
TGCGGTGGATATACAAGTAA+TGG + chr1_1:48079945-48079964 None:intergenic 40.0%
!! GATAGTGGATATGTAGGTGT+TGG + chr1_1:48080020-48080039 None:intergenic 40.0%
!! CCACTTGATAGTGGATATGT+AGG + chr1_1:48080026-48080045 None:intergenic 40.0%
CCTACATATCCACTATCAAG+TGG - chr1_1:48080023-48080042 Msa0025070:CDS 40.0%
AATTGTGGTACCTTGTGTGA+AGG + chr1_1:48080050-48080069 None:intergenic 40.0%
TTGGGCATGGAACTAAATTG+TGG + chr1_1:48080065-48080084 None:intergenic 40.0%
CTTGTGTTCCTTGAAATCCT+GGG + chr1_1:48080088-48080107 None:intergenic 40.0%
TTCACAGACTTACCCTTTAG+TGG + chr1_1:48080237-48080256 None:intergenic 40.0%
! GCTGAAATGCTTTTCGTCTT+CGG + chr1_1:48080341-48080360 None:intergenic 40.0%
! GTGACCTAAATGATGACGAT+AGG - chr1_1:48080408-48080427 Msa0025070:CDS 40.0%
TTGCCCTATCGTCATCATTT+AGG + chr1_1:48080415-48080434 None:intergenic 40.0%
! GTGACTTGTCTGATATGTTG+AGG - chr1_1:48080618-48080637 Msa0025070:CDS 40.0%
GTTGAGGGAAGTTTGTCTTA+AGG - chr1_1:48080634-48080653 Msa0025070:CDS 40.0%
GGCAAAGTTTATTGGAGCAT+TGG - chr1_1:48080690-48080709 Msa0025070:intron 40.0%
! GTTTCTCTTTTCTCTGGCAT+AGG + chr1_1:48080738-48080757 None:intergenic 40.0%
TGCCAGAGAAAAGAGAAACA+TGG - chr1_1:48080739-48080758 Msa0025070:intron 40.0%
! TGCCATGTTTCTCTTTTCTC+TGG + chr1_1:48080744-48080763 None:intergenic 40.0%
! TGATGGAACCTCTTTTCTGT+AGG + chr1_1:48080784-48080803 None:intergenic 40.0%
AACGCAACACGTAACTCAAA+TGG - chr1_1:48080808-48080827 Msa0025070:CDS 40.0%
AAGAGGAGTTCAAACGTGAA+CGG - chr1_1:48080924-48080943 Msa0025070:CDS 40.0%
ACTCAGATCATGAAGGAAAC+TGG - chr1_1:48080960-48080979 Msa0025070:CDS 40.0%
TATGAGTTGTAACCCTGCTA+AGG - chr1_1:48081171-48081190 Msa0025070:CDS 40.0%
GTGTAGTTGGAGGTAAGAAA+AGG - chr1_1:48081224-48081243 Msa0025070:CDS 40.0%
! AGTCGCTTATATGATGATGC+CGG - chr1_1:48081247-48081266 Msa0025070:intron 40.0%
GATGCTCTTGCATTATCCAA+AGG + chr1_1:48081307-48081326 None:intergenic 40.0%
! AGTTTCCGTAGTTTTCGAAC+AGG + chr1_1:48081406-48081425 None:intergenic 40.0%
TAGACTCATGATCAGAAGGT+TGG + chr1_1:48081588-48081607 None:intergenic 40.0%
TGATCATGAGTCTACTTTGG+TGG - chr1_1:48081594-48081613 Msa0025070:CDS 40.0%
GATCATGAGTCTACTTTGGT+GGG - chr1_1:48081595-48081614 Msa0025070:CDS 40.0%
! GAAGCACCATCATTCATCAT+CGG + chr1_1:48081644-48081663 None:intergenic 40.0%
!! TCATTTTTCAGATGGAAGGG+GGG + chr1_1:48081751-48081770 None:intergenic 40.0%
CCCTTCCATCTGAAAAATGA+TGG - chr1_1:48081751-48081770 Msa0025070:CDS 40.0%
!! GCCATCATTTTTCAGATGGA+AGG + chr1_1:48081755-48081774 None:intergenic 40.0%
TCAACTGCACTTTACCAGAA+AGG - chr1_1:48082027-48082046 Msa0025070:CDS 40.0%
CAACTGCACTTTACCAGAAA+GGG - chr1_1:48082028-48082047 Msa0025070:CDS 40.0%
! ACCTCGATTCCTTTGAAAAG+AGG - chr1_1:48082060-48082079 Msa0025070:CDS 40.0%
! ACCTCTTTTCAAAGGAATCG+AGG + chr1_1:48082064-48082083 None:intergenic 40.0%
GTGTAGGGTCTGTAAGTTTA+GGG + chr1_1:48082905-48082924 None:intergenic 40.0%
TGTGTAGGGTCTGTAAGTTT+AGG + chr1_1:48082906-48082925 None:intergenic 40.0%
TTACAGACCCTACACAAAGT+AGG - chr1_1:48082910-48082929 Msa0025070:intron 40.0%
!! GGGGCATTTTCATTTTTGCG+AGG + chr1_1:48078453-48078472 None:intergenic 45.0%
! GAGTTTTTCACAGTTCCGAG+GGG + chr1_1:48078472-48078491 None:intergenic 45.0%
! CGAGTTTTTCACAGTTCCGA+GGG + chr1_1:48078473-48078492 None:intergenic 45.0%
! ACGAGTTTTTCACAGTTCCG+AGG + chr1_1:48078474-48078493 None:intergenic 45.0%
CGGAACTGTGAAAAACTCGT+CGG - chr1_1:48078474-48078493 Msa0025070:three_prime_UTR 45.0%
GGGAGTGAAAAATGAGAGAG+AGG + chr1_1:48078551-48078570 None:intergenic 45.0%
AATGACGGCTACTGGAAGAA+GGG + chr1_1:48078572-48078591 None:intergenic 45.0%
CTAACCCACCCAATGATAAG+GGG - chr1_1:48079016-48079035 Msa0025070:intron 45.0%
CTTTCCCCTTATCATTGGGT+GGG + chr1_1:48079023-48079042 None:intergenic 45.0%
TCTTTCCCCTTATCATTGGG+TGG + chr1_1:48079024-48079043 None:intergenic 45.0%
GTATCTTTAGTCAGCGGCAT+AGG + chr1_1:48079138-48079157 None:intergenic 45.0%
ACAGCTGATGAAGTATGGGT+AGG + chr1_1:48079294-48079313 None:intergenic 45.0%
ACCACCGAAACTTACACCAT+CGG - chr1_1:48079335-48079354 Msa0025070:intron 45.0%
!! GTAGGTGGTGGATAAATAGG+TGG + chr1_1:48079372-48079391 None:intergenic 45.0%
! GACAATGGATTTGTAGGTGG+TGG + chr1_1:48079429-48079448 None:intergenic 45.0%
CCACCTACAAATCCATTGTC+GGG - chr1_1:48079429-48079448 Msa0025070:intron 45.0%
CATTCTAGCAAGGTAACTCC+TGG - chr1_1:48079516-48079535 Msa0025070:three_prime_UTR 45.0%
TCTGGAGAACTAGAAACTCC+AGG + chr1_1:48079537-48079556 None:intergenic 45.0%
GGCACAGGTATAAATTGGTC+TGG + chr1_1:48079555-48079574 None:intergenic 45.0%
TCGTCGGCACAGGTATAAAT+TGG + chr1_1:48079560-48079579 None:intergenic 45.0%
ATCTGTGTATGTGCAGTCGT+CGG + chr1_1:48079576-48079595 None:intergenic 45.0%
GATGGAGATTGAGAACTGGT+AGG + chr1_1:48079630-48079649 None:intergenic 45.0%
GGTAGATGGAGATTGAGAAC+TGG + chr1_1:48079634-48079653 None:intergenic 45.0%
AAGCGTCCACCTAGTGATAA+GGG - chr1_1:48079744-48079763 Msa0025070:intron 45.0%
ATATCCTCCCCCTTATCACT+AGG + chr1_1:48079756-48079775 None:intergenic 45.0%
TGTGAAGGTCCACTTGATAG+TGG + chr1_1:48080035-48080054 None:intergenic 45.0%
ATCAAGTGGACCTTCACACA+AGG - chr1_1:48080037-48080056 Msa0025070:CDS 45.0%
GTTCCTTGAAATCCTGGGTT+GGG + chr1_1:48080083-48080102 None:intergenic 45.0%
TGTTCCTTGAAATCCTGGGT+TGG + chr1_1:48080084-48080103 None:intergenic 45.0%
CCTTGTGTTCCTTGAAATCC+TGG + chr1_1:48080089-48080108 None:intergenic 45.0%
CCAGGATTTCAAGGAACACA+AGG - chr1_1:48080086-48080105 Msa0025070:CDS 45.0%
AGATGGCATTCATGATGCTG+AGG - chr1_1:48080169-48080188 Msa0025070:CDS 45.0%
GATGGCATTCATGATGCTGA+GGG - chr1_1:48080170-48080189 Msa0025070:CDS 45.0%
ATGGCATTCATGATGCTGAG+GGG - chr1_1:48080171-48080190 Msa0025070:CDS 45.0%
CAGACTTACCCTTTAGTGGA+AGG + chr1_1:48080233-48080252 None:intergenic 45.0%
!! CTTTTCGTCTTCGGCTTTGA+AGG + chr1_1:48080332-48080351 None:intergenic 45.0%
! CCATCCCTACATTTTGTCTG+TGG + chr1_1:48080389-48080408 None:intergenic 45.0%
CCACAGACAAAATGTAGGGA+TGG - chr1_1:48080386-48080405 Msa0025070:CDS 45.0%
ATTGGATAGGCGAGACTGTA+TGG - chr1_1:48080669-48080688 Msa0025070:intron 45.0%
TACGTGTTGCGTTGTGTTGA+TGG + chr1_1:48080801-48080820 None:intergenic 45.0%
GTTCACGTTTGAACTCCTCT+TGG + chr1_1:48080925-48080944 None:intergenic 45.0%
AGAGGAGTTCAAACGTGAAC+GGG - chr1_1:48080925-48080944 Msa0025070:CDS 45.0%
! AAACGTGAACGGGCTTCATA+AGG - chr1_1:48080935-48080954 Msa0025070:CDS 45.0%
GCAGGGTTACAACTCATAGA+TGG + chr1_1:48081169-48081188 None:intergenic 45.0%
TACACCCGAACAAGTGGTAA+GGG + chr1_1:48081209-48081228 None:intergenic 45.0%
ATGCCGGCAACTACAAGAAA+GGG - chr1_1:48081263-48081282 Msa0025070:intron 45.0%
! ATCGTTAGCCTGTAGTGGTA+GGG - chr1_1:48081324-48081343 Msa0025070:intron 45.0%
! TAGGGAGTTGGTTCCCAATT+TGG - chr1_1:48081342-48081361 Msa0025070:CDS 45.0%
! GTTGGTTCCCAATTTGGTTG+AGG - chr1_1:48081348-48081367 Msa0025070:CDS 45.0%
AGGGGGAATTGCTGAAGAAA+CGG - chr1_1:48081446-48081465 Msa0025070:CDS 45.0%
ATTGCTGAAGAAACGGACAG+AGG - chr1_1:48081453-48081472 Msa0025070:CDS 45.0%
TTGCTGAAGAAACGGACAGA+GGG - chr1_1:48081454-48081473 Msa0025070:CDS 45.0%
ACTCATGATCAGAAGGTTGG+AGG + chr1_1:48081585-48081604 None:intergenic 45.0%
GGCAATCAAGACGTTGATGT+TGG - chr1_1:48081616-48081635 Msa0025070:CDS 45.0%
!! TTGGTGCCGATGATGAATGA+TGG - chr1_1:48081635-48081654 Msa0025070:CDS 45.0%
ATCTCAGGTGTCAAATTGGC+AGG - chr1_1:48081951-48081970 Msa0025070:CDS 45.0%
! TCGTCAAACAACGGCTTTTG+CGG + chr1_1:48083008-48083027 None:intergenic 45.0%
!! TATATAACATAAAATATAAT+AGG + chr1_1:48080521-48080540 None:intergenic 5.0%
ATGACGGCTACTGGAAGAAG+GGG + chr1_1:48078571-48078590 None:intergenic 50.0%
GAATGACGGCTACTGGAAGA+AGG + chr1_1:48078573-48078592 None:intergenic 50.0%
TTCCAGTAGCCGTCATTCAC+TGG - chr1_1:48078575-48078594 Msa0025070:intron 50.0%
TTGCGAGTACGCTCAACAGT+AGG + chr1_1:48079069-48079088 None:intergenic 50.0%
ACTCGAATTTCCTCGCGAGT+AGG + chr1_1:48079198-48079217 None:intergenic 50.0%
GTCTGTGTATGTGCAGTCGT+GGG + chr1_1:48079240-48079259 None:intergenic 50.0%
AGTCTGTGTATGTGCAGTCG+TGG + chr1_1:48079241-48079260 None:intergenic 50.0%
GGAGCATATGTACGAGGAGA+TGG + chr1_1:48079264-48079283 None:intergenic 50.0%
GATGAAGTATGGGTAGGTGG+AGG + chr1_1:48079288-48079307 None:intergenic 50.0%
GCTGATGAAGTATGGGTAGG+TGG + chr1_1:48079291-48079310 None:intergenic 50.0%
GGTGGTGCATATGCATGTTG+TGG + chr1_1:48079321-48079340 None:intergenic 50.0%
CCACCGAAACTTACACCATC+GGG - chr1_1:48079336-48079355 Msa0025070:intron 50.0%
! CCCGACAATGGATTTGTAGG+TGG + chr1_1:48079432-48079451 None:intergenic 50.0%
! CCACCCGACAATGGATTTGT+AGG + chr1_1:48079435-48079454 None:intergenic 50.0%
CCTACAAATCCATTGTCGGG+TGG - chr1_1:48079432-48079451 Msa0025070:intron 50.0%
TGTAAAGGTCCACCCGACAA+TGG + chr1_1:48079444-48079463 None:intergenic 50.0%
GGAACATAGGTACGAGGAGA+TGG + chr1_1:48079600-48079619 None:intergenic 50.0%
GATTGAGAACTGGTAGGTGG+AGG + chr1_1:48079624-48079643 None:intergenic 50.0%
GGAGATTGAGAACTGGTAGG+TGG + chr1_1:48079627-48079646 None:intergenic 50.0%
TTTGGCAGTGCGTATGTCGA+TGG + chr1_1:48079696-48079715 None:intergenic 50.0%
CTAGGTGGACGCTTCTTTGA+AGG + chr1_1:48079738-48079757 None:intergenic 50.0%
! GAAGCGTCCACCTAGTGATA+AGG - chr1_1:48079743-48079762 Msa0025070:intron 50.0%
AGCGTCCACCTAGTGATAAG+GGG - chr1_1:48079745-48079764 Msa0025070:intron 50.0%
GCGAGAACGACCATTAGTAG+TGG + chr1_1:48079784-48079803 None:intergenic 50.0%
GTATGTGCAGTCATCGGCAT+AGG + chr1_1:48079852-48079871 None:intergenic 50.0%
GGAGGCTGAGTATAGGTATG+AGG + chr1_1:48079888-48079907 None:intergenic 50.0%
GGTAGATGGAGACTGAGAAC+GGG + chr1_1:48079916-48079935 None:intergenic 50.0%
GGGTAGATGGAGACTGAGAA+CGG + chr1_1:48079917-48079936 None:intergenic 50.0%
ACCGCATACATATGCACCAC+CGG - chr1_1:48079959-48079978 Msa0025070:CDS 50.0%
!! GTAGGTGTTGGATATGTCGG+CGG + chr1_1:48080008-48080027 None:intergenic 50.0%
! TTTAGTTCCATGCCCAACCC+AGG - chr1_1:48080068-48080087 Msa0025070:CDS 50.0%
! TTGAAATCCTGGGTTGGGCA+TGG + chr1_1:48080078-48080097 None:intergenic 50.0%
ATGCCCAACCCAGGATTTCA+AGG - chr1_1:48080077-48080096 Msa0025070:CDS 50.0%
TCTTGACCAGCCTGATAAGG+CGG + chr1_1:48080152-48080171 None:intergenic 50.0%
CCATCTTGACCAGCCTGATA+AGG + chr1_1:48080155-48080174 None:intergenic 50.0%
! CCTTATCAGGCTGGTCAAGA+TGG - chr1_1:48080152-48080171 Msa0025070:CDS 50.0%
CATATCAGACAAGTCACGCG+AGG + chr1_1:48080615-48080634 None:intergenic 50.0%
TTAAGGGTCAGTGCCCACAT+TGG - chr1_1:48080651-48080670 Msa0025070:CDS 50.0%
CAGTCTCGCCTATCCAATGT+GGG + chr1_1:48080667-48080686 None:intergenic 50.0%
ACAGTCTCGCCTATCCAATG+TGG + chr1_1:48080668-48080687 None:intergenic 50.0%
GGGGAAAGCCTACAGAAAAG+AGG - chr1_1:48080773-48080792 Msa0025070:CDS 50.0%
! TATAGGAGAAGTGTGAGGCG+AGG - chr1_1:48081107-48081126 Msa0025070:intron 50.0%
GGGCAACAACATCCTTAGCA+GGG + chr1_1:48081186-48081205 None:intergenic 50.0%
ACACCCGAACAAGTGGTAAG+GGG + chr1_1:48081208-48081227 None:intergenic 50.0%
CTACACCCGAACAAGTGGTA+AGG + chr1_1:48081210-48081229 None:intergenic 50.0%
ACCACTTGTTCGGGTGTAGT+TGG - chr1_1:48081211-48081230 Msa0025070:CDS 50.0%
TCCAACTACACCCGAACAAG+TGG + chr1_1:48081215-48081234 None:intergenic 50.0%
ACTTGTTCGGGTGTAGTTGG+AGG - chr1_1:48081214-48081233 Msa0025070:CDS 50.0%
GATGCCGGCAACTACAAGAA+AGG - chr1_1:48081262-48081281 Msa0025070:intron 50.0%
TGCCGGCAACTACAAGAAAG+GGG - chr1_1:48081264-48081283 Msa0025070:intron 50.0%
!! AGAGCATCGTTAGCCTGTAG+TGG - chr1_1:48081319-48081338 Msa0025070:intron 50.0%
! CATCGTTAGCCTGTAGTGGT+AGG - chr1_1:48081323-48081342 Msa0025070:intron 50.0%
AACCAACTCCCTACCACTAC+AGG + chr1_1:48081335-48081354 None:intergenic 50.0%
TGCTGAAGAAACGGACAGAG+GGG - chr1_1:48081455-48081474 Msa0025070:CDS 50.0%
CATGATCAGAAGGTTGGAGG+CGG + chr1_1:48081582-48081601 None:intergenic 50.0%
!! CTCTTCCCCCATTTCAGGTT+TGG + chr1_1:48081820-48081839 None:intergenic 50.0%
CAAACCTGAAATGGGGGAAG+AGG - chr1_1:48081818-48081837 Msa0025070:CDS 50.0%
AGATCCTCTTCCCCCATTTC+AGG + chr1_1:48081825-48081844 None:intergenic 50.0%
GTCTGATGCAGACAGTACAG+CGG + chr1_1:48082281-48082300 None:intergenic 50.0%
TGTCTGCATCAGACATACGC+TGG - chr1_1:48082287-48082306 Msa0025070:CDS 50.0%
GACCAGTGAATGACGGCTAC+TGG + chr1_1:48078580-48078599 None:intergenic 55.0%
CTGTTGAGCGTACTCGCAAG+TGG - chr1_1:48079070-48079089 Msa0025070:intron 55.0%
TCAGCGGCATAGGTACAAGC+TGG + chr1_1:48079128-48079147 None:intergenic 55.0%
GCGAGTAGGCCTAGTAGTAG+TGG + chr1_1:48079184-48079203 None:intergenic 55.0%
TACTACTAGGCCTACTCGCG+AGG - chr1_1:48079185-48079204 Msa0025070:intron 55.0%
GTATGTGCAGTCGTGGGCAT+AGG + chr1_1:48079234-48079253 None:intergenic 55.0%
GAAGTATGGGTAGGTGGAGG+CGG + chr1_1:48079285-48079304 None:intergenic 55.0%
CCCGATGGTGTAAGTTTCGG+TGG + chr1_1:48079339-48079358 None:intergenic 55.0%
!! GTAGGTGGTGGATTCACCGA+TGG + chr1_1:48079417-48079436 None:intergenic 55.0%
CGGGTGGACCTTTACACAAG+CGG - chr1_1:48079448-48079467 Msa0025070:intron 55.0%
ACACCCTTCCCCTTACCACT+GGG + chr1_1:48079477-48079496 None:intergenic 55.0%
! AGTGGTAAGGGGAAGGGTGT+CGG - chr1_1:48079477-48079496 Msa0025070:intron 55.0%
GGAGGTGGAACATAGGTACG+AGG + chr1_1:48079606-48079625 None:intergenic 55.0%
GGTAGGTGGAGGTGGAACAT+AGG + chr1_1:48079613-48079632 None:intergenic 55.0%
TGAGAACTGGTAGGTGGAGG+TGG + chr1_1:48079621-48079640 None:intergenic 55.0%
GCGTCCACCTAGTGATAAGG+GGG - chr1_1:48079746-48079765 Msa0025070:intron 55.0%
TCCACCTAGTGATAAGGGGG+AGG - chr1_1:48079749-48079768 Msa0025070:intron 55.0%
TCCTCCCCCTTATCACTAGG+TGG + chr1_1:48079753-48079772 None:intergenic 55.0%
GGTAGGTGGAGGCTGAGTAT+AGG + chr1_1:48079895-48079914 None:intergenic 55.0%
GATGGAGACTGAGAACGGGT+AGG + chr1_1:48079912-48079931 None:intergenic 55.0%
GGTGGTGCATATGTATGCGG+TGG + chr1_1:48079960-48079979 None:intergenic 55.0%
GCCGGTGGTGCATATGTATG+CGG + chr1_1:48079963-48079982 None:intergenic 55.0%
GATGTCGACGGTGTATACGC+CGG + chr1_1:48079981-48080000 None:intergenic 55.0%
TGTTGGATATGTCGGCGGTG+CGG + chr1_1:48080003-48080022 None:intergenic 55.0%
TGATAAGGCGGACGCTGAGA+TGG + chr1_1:48080140-48080159 None:intergenic 55.0%
ATCTCAGCGTCCGCCTTATC+AGG - chr1_1:48080139-48080158 Msa0025070:CDS 55.0%
GGTCAGTGCCCACATTGGAT+AGG - chr1_1:48080656-48080675 Msa0025070:intron 55.0%
GGGGCAACAACATCCTTAGC+AGG + chr1_1:48081187-48081206 None:intergenic 55.0%
TGCCCCCCTTACCACTTGTT+CGG - chr1_1:48081201-48081220 Msa0025070:CDS 55.0%
ACCCGAACAAGTGGTAAGGG+GGG + chr1_1:48081206-48081225 None:intergenic 55.0%
CACCCGAACAAGTGGTAAGG+GGG + chr1_1:48081207-48081226 None:intergenic 55.0%
GGCCCCTTTCTTGTAGTTGC+CGG + chr1_1:48081269-48081288 None:intergenic 55.0%
AGCCTGTAGTGGTAGGGAGT+TGG - chr1_1:48081330-48081349 Msa0025070:intron 55.0%
TCGCAAGTGGCGCACTCATC+TGG - chr1_1:48079083-48079102 Msa0025070:intron 60.0%
GGAGGCGGAGCATATGTACG+AGG + chr1_1:48079270-48079289 None:intergenic 60.0%
GGTGGCAGTGTGTATCCCGA+TGG + chr1_1:48079354-48079373 None:intergenic 60.0%
CTGGGTGGCCGCTTGTGTAA+AGG + chr1_1:48079459-48079478 None:intergenic 60.0%
TTACACAAGCGGCCACCCAG+TGG - chr1_1:48079459-48079478 Msa0025070:intron 60.0%
AAGCGGCCACCCAGTGGTAA+GGG - chr1_1:48079465-48079484 Msa0025070:intron 60.0%
CCACCCAGTGGTAAGGGGAA+GGG - chr1_1:48079471-48079490 Msa0025070:intron 60.0%
GACACCCTTCCCCTTACCAC+TGG + chr1_1:48079478-48079497 None:intergenic 60.0%
GTATGTGCAGTCGTCGGCAC+AGG + chr1_1:48079570-48079589 None:intergenic 60.0%
GACTGAGAACGGGTAGGTGG+AGG + chr1_1:48079906-48079925 None:intergenic 60.0%
GGAGACTGAGAACGGGTAGG+TGG + chr1_1:48079909-48079928 None:intergenic 60.0%
GCCCCCCTTACCACTTGTTC+GGG - chr1_1:48081202-48081221 Msa0025070:CDS 60.0%
GATCAGAAGGTTGGAGGCGG+CGG + chr1_1:48081579-48081598 None:intergenic 60.0%
CAAGCGGCCACCCAGTGGTA+AGG - chr1_1:48079464-48079483 Msa0025070:intron 65.0%
AGCGGCCACCCAGTGGTAAG+GGG - chr1_1:48079466-48079485 Msa0025070:intron 65.0%
GCCACCCAGTGGTAAGGGGA+AGG - chr1_1:48079470-48079489 Msa0025070:intron 65.0%
CCCTTCCCCTTACCACTGGG+TGG + chr1_1:48079474-48079493 None:intergenic 65.0%
GTCGACGGTGTATACGCCGG+TGG + chr1_1:48079978-48079997 None:intergenic 65.0%
GGCGGACGCTGAGATGGCTT+AGG + chr1_1:48080134-48080153 None:intergenic 65.0%
CAGCGTCCGCCTTATCAGGC+TGG - chr1_1:48080143-48080162 Msa0025070:CDS 65.0%
GTCGGCGGTGCGGATGTCGA+CGG + chr1_1:48079993-48080012 None:intergenic 70.0%
GGAGGCGGCGGTGACGTCCA+TGG + chr1_1:48081567-48081586 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 48078406 48083179 48078406 ID=Msa0025070;Name=Msa0025070
chr1_1 mRNA 48078406 48083179 48078406 ID=Msa0025070-mRNA-1;Parent=Msa0025070;Name=Msa0025070-mRNA-1;_AED=0.09;_eAED=0.12;_QI=0|0.85|0.75|1|0.57|0.37|8|201|803
chr1_1 exon 48078406 48078495 48078406 ID=Msa0025070-mRNA-1:exon:13743;Parent=Msa0025070-mRNA-1
chr1_1 exon 48079504 48079612 48079504 ID=Msa0025070-mRNA-1:exon:13742;Parent=Msa0025070-mRNA-1
chr1_1 exon 48079929 48080473 48079929 ID=Msa0025070-mRNA-1:exon:13741;Parent=Msa0025070-mRNA-1
chr1_1 exon 48080569 48080673 48080569 ID=Msa0025070-mRNA-1:exon:13740;Parent=Msa0025070-mRNA-1
chr1_1 exon 48080756 48081034 48080756 ID=Msa0025070-mRNA-1:exon:13739;Parent=Msa0025070-mRNA-1
chr1_1 exon 48081131 48081263 48081131 ID=Msa0025070-mRNA-1:exon:13738;Parent=Msa0025070-mRNA-1
chr1_1 exon 48081342 48082591 48081342 ID=Msa0025070-mRNA-1:exon:13737;Parent=Msa0025070-mRNA-1
chr1_1 exon 48083078 48083179 48083078 ID=Msa0025070-mRNA-1:exon:13736;Parent=Msa0025070-mRNA-1
chr1_1 CDS 48083078 48083179 48083078 ID=Msa0025070-mRNA-1:cds;Parent=Msa0025070-mRNA-1
chr1_1 CDS 48081342 48082591 48081342 ID=Msa0025070-mRNA-1:cds;Parent=Msa0025070-mRNA-1
chr1_1 CDS 48081131 48081263 48081131 ID=Msa0025070-mRNA-1:cds;Parent=Msa0025070-mRNA-1
chr1_1 CDS 48080756 48081034 48080756 ID=Msa0025070-mRNA-1:cds;Parent=Msa0025070-mRNA-1
chr1_1 CDS 48080569 48080673 48080569 ID=Msa0025070-mRNA-1:cds;Parent=Msa0025070-mRNA-1
chr1_1 CDS 48079931 48080473 48079931 ID=Msa0025070-mRNA-1:cds;Parent=Msa0025070-mRNA-1
chr1_1 three_prime_UTR 48079929 48079930 48079929 ID=Msa0025070-mRNA-1:three_prime_utr;Parent=Msa0025070-mRNA-1
chr1_1 three_prime_UTR 48079504 48079612 48079504 ID=Msa0025070-mRNA-1:three_prime_utr;Parent=Msa0025070-mRNA-1
chr1_1 three_prime_UTR 48078406 48078495 48078406 ID=Msa0025070-mRNA-1:three_prime_utr;Parent=Msa0025070-mRNA-1
Gene Sequence

>Msa0025070

ATGAGTGGTTGGAAAGTAATGGATAATTTTGCAATTGAAATGCCCCTCGCAAAAATGAAAATGCCCCTCGGAACTGTGAAAAACTCGTCGGAAAAATTTAGGATAAACATGTCATCAGGAGGAACTAACCCACCCAATGATAAGGGGAAAGATGTTGCATCCACTACTACTAGACCTACTGTTGAGCGTACTCGCAAGTGGCGCACTCATCTGGCTCCTCAACATGTTTTAGACCAGCTTGTACCTATGCCGCTGACTAAAGATACACAGACGGGGAAAGATGTTGCATCCACTACTACTAGGCCTACTCGCGAGGAAATTCGAGTAGACAAGTCTATACCTATGCCCACGACTGCACATACACAGACTCCATCTCCTCGTACATATGCTCCGCCTCCACCTACCCATACTTCATCAGCTGTGTATCCACAACATGCATATGCACCACCGAAACTTACACCATCGGGATACACACTGCCACCTATTTATCCACCACCTACATATTCACATCATGCATATGCTCCATCGGTGAATCCACCACCTACAAATCCATTGTCGGGTGGACCTTTACACAAGCGGCCACCCAGTGGTAAGGGGAAGGGTGTCGGATCCATTACCACTAGTCATTCTAGCAAGGTAACTCCTGGAGTTTCTAGTTCTCCAGACCAATTTATACCTGTGCCGACGACTGCACATACACAGATTCCATCTCCTCGTACCTATGTTCCACCTCCACCTACCAGTTCTCAATCTCCATCTACCCAATTTCCATTACATGTATATCCACTAAATGCATATGCACCATCGACATACGCACTGCCAAAATATCCACTATCAAGTGAACCTTCAAAGAAGCGTCCACCTAGTGATAAGGGGGAGGATATCGCATCCACTACTAATGGTCGTTCTCGCAAAGTAACTCGAGTAGTTTCTGGTTCTCCTTTAGACCAGTTTATACCTATGCCGATGACTGCACATACACAAACTCCATCTCCTCATACCTATACTCAGCCTCCACCTACCCGTTCTCAGTCTCCATCTACCCAATTTCCATTACTTGTATATCCACCGCATACATATGCACCACCGGCGTATACACCGTCGACATCCGCACCGCCGACATATCCAACACCTACATATCCACTATCAAGTGGACCTTCACACAAGGTACCACAATTTAGTTCCATGCCCAACCCAGGATTTCAAGGAACACAAGGAACTCCATTAAAGTCTAGTCATCCTAAGCCATCTCAGCGTCCGCCTTATCAGGCTGGTCAAGATGGCATTCATGATGCTGAGGGGATTAACATGTTTGATGATGGAAGACACGTTATTCAACCTTCCACTAAAGGGCTTTTGCCTTCAAAGCCGAAGACGAAAAGCATTTCAGCAAATATACAATCCCAACATAAAAAGCCACAGACAAAATGTAGGGATGGTGACCTAAATGATGACGATAGGGCAAAAAAATTCAAGGTTTTTAGTGAGAAGTGTACATGGCATGACAAGCAGAGTGATCAGATTCAGAATAACTTTCATGTGAGAGCCTCGCGTGACTTGTCTGATATGTTGAGGGAAGTTTGTCTTAAGGGTCAGTGCCCACATTGGATAGGCGAGACTGTATGGCAAAGTTTATTGGAGCATTGGAGTTCCGCTAGTTTTCAGTTGACCTATGCCAGAGAAAAGAGAAACATGGCATCAAAGAAAGGGGAAAGCCTACAGAAAAGAGGTTCCATCAACACAACGCAACACGTAACTCAAATGACTAAGAAGTCCAAGAGGAGTTCAAACGTGAACGGGCTTCATAAGGATACTCAGATCATGAAGGAAACTGGTGATTATGCAGATGACCATTCTAGAAAGAATCAGGAGAAGTGTGAGGCGAGGAAGTCTCAGACTAGATCTCAAAATAATTCAACTTCTCCATCTATGAGTTGTAACCCTGCTAAGGATGTTGTTGCCCCCCTTACCACTTGTTCGGGTGTAGTTGGAGGTAAGAAAAGGAGTCGCTTATATGATGATGCCGGCAACTACAAGAAAGGGGCCATGAGTCTTAATATTCCTTTGGATAATGCAAGAGCATCGTTAGCCTGTAGTGGTAGGGAGTTGGTTCCCAATTTGGTTGAGGTTCTACAAAGAACAGTGACTTCTAGTGAAGATCCTGTTCGAAAACTACGGAAACTAAAAAAGATTATGAATTCGCAGGGGGAATTGCTGAAGAAACGGACAGAGGGGCTAGAAGAGCTAAAAAAACGTCTGCAAAAAATGAAAGAGGAGCGAGAAGCATTTGAAGAACGTGTGCGAAAATTATTCGCTCAAGACCATGGACGTCACCGCCGCCTCCAACCTTCTGATCATGAGTCTACTTTGGTGGGCAATCAAGACGTTGATGTTGGTGCCGATGATGAATGA
Protein sequence

>Msa0025070

MSGWKVMDNFAIEMPLAKMKMPLGTVKNSSEKFRINMSSGGTNPPNDKGKDVASTTTRPTVERTRKWRTHLAPQHVLDQLVPMPLTKDTQTGKDVASTTTRPTREEIRVDKSIPMPTTAHTQTPSPRTYAPPPPTHTSSAVYPQHAYAPPKLTPSGYTLPPIYPPPTYSHHAYAPSVNPPPTNPLSGGPLHKRPPSGKGKGVGSITTSHSSKVTPGVSSSPDQFIPVPTTAHTQIPSPRTYVPPPPTSSQSPSTQFPLHVYPLNAYAPSTYALPKYPLSSEPSKKRPPSDKGEDIASTTNGRSRKVTRVVSGSPLDQFIPMPMTAHTQTPSPHTYTQPPPTRSQSPSTQFPLLVYPPHTYAPPAYTPSTSAPPTYPTPTYPLSSGPSHKVPQFSSMPNPGFQGTQGTPLKSSHPKPSQRPPYQAGQDGIHDAEGINMFDDGRHVIQPSTKGLLPSKPKTKSISANIQSQHKKPQTKCRDGDLNDDDRAKKFKVFSEKCTWHDKQSDQIQNNFHVRASRDLSDMLREVCLKGQCPHWIGETVWQSLLEHWSSASFQLTYAREKRNMASKKGESLQKRGSINTTQHVTQMTKKSKRSSNVNGLHKDTQIMKETGDYADDHSRKNQEKCEARKSQTRSQNNSTSPSMSCNPAKDVVAPLTTCSGVVGGKKRSRLYDDAGNYKKGAMSLNIPLDNARASLACSGRELVPNLVEVLQRTVTSSEDPVRKLRKLKKIMNSQGELLKKRTEGLEELKKRLQKMKEEREAFEERVRKLFAQDHGRHRRLQPSDHESTLVGNQDVDVGADDE*