Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0891590 | XP_013449941.1 | 98.466 | 326 | 5 | 0 | 1 | 326 | 1 | 326 | 0.0 | 652 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0891590 | sp|Q9CAN1|RBL2_ARATH | 66.254 | 323 | 103 | 2 | 1 | 323 | 1 | 317 | 1.72e-148 | 423 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0891590 | B7FIQ5 | 98.466 | 326 | 5 | 0 | 1 | 326 | 1 | 326 | 0.0 | 652 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026780 | Msa0891590 | 0.808799 | 2.592846e-50 | -8.615850e-47 |
| Msa0122530 | Msa0891590 | 0.816384 | 5.686706e-52 | -8.615850e-47 |
| Msa0374220 | Msa0891590 | 0.817487 | 3.214743e-52 | -8.615850e-47 |
| Msa0379790 | Msa0891590 | -0.808774 | 2.625199e-50 | -8.615850e-47 |
| Msa0469890 | Msa0891590 | 0.809993 | 1.437425e-50 | -8.615850e-47 |
| Msa0269970 | Msa0891590 | 0.818160 | 2.266303e-52 | -8.615850e-47 |
| Msa0854000 | Msa0891590 | 0.805744 | 1.151666e-49 | -8.615850e-47 |
| Msa0891590 | Msa0910960 | 0.847662 | 1.003269e-59 | -8.615850e-47 |
| Msa0891590 | Msa0972680 | 0.805576 | 1.248592e-49 | -8.615850e-47 |
| Msa0891590 | Msa0992510 | 0.870147 | 1.816872e-66 | -8.615850e-47 |
| Msa0891590 | Msa1184230 | 0.832806 | 7.661532e-56 | -8.615850e-47 |
| Msa0891590 | Msa1228040 | 0.814030 | 1.896018e-51 | -8.615850e-47 |
| Msa0891590 | Msa1357560 | 0.800232 | 1.586958e-48 | -8.615850e-47 |
| Msa0891590 | Msa1392980 | 0.844589 | 6.883493e-59 | -8.615850e-47 |
| Msa0891590 | Msa1417440 | -0.807809 | 4.215267e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0891590 | MtrunA17_Chr6g0472501 | 98.466 | 326 | 5 | 0 | 1 | 326 | 1 | 326 | 0.0 | 652 |
| Msa0891590 | MtrunA17_Chr4g0009841 | 61.398 | 329 | 115 | 4 | 6 | 326 | 8 | 332 | 1.57e-142 | 407 |
| Msa0891590 | MtrunA17_Chr1g0203681 | 64.110 | 326 | 97 | 4 | 4 | 326 | 10 | 318 | 2.53e-139 | 397 |
| Msa0891590 | MtrunA17_Chr2g0328271 | 63.973 | 297 | 101 | 2 | 34 | 326 | 43 | 337 | 3.51e-130 | 376 |
| Msa0891590 | MtrunA17_Chr7g0238701 | 60.678 | 295 | 110 | 3 | 34 | 326 | 25 | 315 | 1.20e-125 | 364 |
| Msa0891590 | MtrunA17_Chr2g0332941 | 56.884 | 276 | 111 | 3 | 34 | 302 | 30 | 304 | 6.07e-106 | 312 |
| Msa0891590 | MtrunA17_Chr3g0115331 | 44.257 | 296 | 155 | 2 | 37 | 325 | 42 | 334 | 1.29e-75 | 237 |
| Msa0891590 | MtrunA17_Chr2g0322601 | 39.153 | 189 | 91 | 4 | 134 | 320 | 1 | 167 | 1.41e-29 | 111 |
| Msa0891590 | MtrunA17_Chr2g0322611 | 46.237 | 93 | 50 | 0 | 90 | 182 | 1 | 93 | 1.06e-22 | 90.5 |
| Msa0891590 | MtrunA17_Chr6g0457251 | 29.213 | 178 | 109 | 4 | 105 | 271 | 206 | 377 | 3.89e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0891590 | AT1G63120.1 | 66.254 | 323 | 103 | 2 | 1 | 323 | 1 | 317 | 1.75e-149 | 423 |
| Msa0891590 | AT5G07250.1 | 65.476 | 336 | 103 | 3 | 1 | 325 | 12 | 345 | 9.31e-145 | 412 |
| Msa0891590 | AT2G29050.1 | 64.452 | 301 | 100 | 3 | 29 | 326 | 48 | 344 | 4.46e-140 | 402 |
| Msa0891590 | AT1G12750.4 | 59.877 | 324 | 112 | 3 | 1 | 323 | 1 | 307 | 2.58e-137 | 392 |
| Msa0891590 | AT1G12750.7 | 59.877 | 324 | 112 | 3 | 1 | 323 | 1 | 307 | 2.58e-137 | 392 |
| Msa0891590 | AT1G12750.6 | 59.877 | 324 | 112 | 3 | 1 | 323 | 1 | 307 | 2.58e-137 | 392 |
| Msa0891590 | AT1G12750.3 | 59.877 | 324 | 112 | 3 | 1 | 323 | 1 | 307 | 2.58e-137 | 392 |
| Msa0891590 | AT1G12750.1 | 59.877 | 324 | 112 | 3 | 1 | 323 | 1 | 307 | 2.58e-137 | 392 |
| Msa0891590 | AT3G53780.2 | 53.372 | 341 | 134 | 4 | 3 | 324 | 13 | 347 | 6.46e-123 | 358 |
| Msa0891590 | AT2G29050.2 | 58.416 | 303 | 90 | 5 | 29 | 299 | 48 | 346 | 6.76e-118 | 344 |
| Msa0891590 | AT5G07250.2 | 54.167 | 336 | 94 | 4 | 1 | 325 | 12 | 298 | 2.41e-105 | 310 |
| Msa0891590 | AT3G53780.3 | 53.443 | 305 | 117 | 4 | 3 | 288 | 13 | 311 | 3.06e-105 | 310 |
| Msa0891590 | AT1G52580.1 | 53.659 | 287 | 122 | 5 | 23 | 302 | 17 | 299 | 7.19e-101 | 299 |
| Msa0891590 | AT3G53780.1 | 58.590 | 227 | 92 | 1 | 100 | 326 | 1 | 225 | 2.16e-97 | 289 |
| Msa0891590 | AT4G23070.1 | 53.583 | 321 | 136 | 3 | 2 | 321 | 4 | 312 | 3.47e-97 | 290 |
| Msa0891590 | AT1G77860.1 | 44.444 | 297 | 152 | 3 | 37 | 325 | 48 | 339 | 2.54e-87 | 266 |
| Msa0891590 | AT1G77860.2 | 44.444 | 297 | 152 | 3 | 37 | 325 | 48 | 339 | 3.23e-87 | 267 |
| Msa0891590 | AT1G12750.2 | 59.330 | 209 | 68 | 2 | 1 | 209 | 1 | 192 | 3.34e-85 | 255 |
| Msa0891590 | AT1G12750.5 | 59.709 | 206 | 66 | 2 | 1 | 206 | 1 | 189 | 5.72e-85 | 255 |
| Msa0891590 | AT1G25290.2 | 34.615 | 156 | 100 | 2 | 104 | 258 | 157 | 311 | 1.09e-16 | 80.1 |
| Msa0891590 | AT1G25290.1 | 33.333 | 162 | 101 | 2 | 104 | 258 | 157 | 318 | 1.03e-15 | 77.4 |
Find 98 sgRNAs with CRISPR-Local
Find 288 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAACTACACTCACTTTAT+TGG | 0.150191 | 6_1:-67294901 | None:intergenic |
| AAGGAAAGTTTGGAAATTTA+TGG | 0.166349 | 6_1:-67292500 | None:intergenic |
| ATTCGCCTTGAACAACAATT+TGG | 0.203114 | 6_1:+67294349 | Msa0891590:CDS |
| CTCCTTCCCCGTCCTCAATT+TGG | 0.207305 | 6_1:+67295670 | Msa0891590:CDS |
| AGGTTTACCAATATGTTCTA+TGG | 0.211456 | 6_1:+67295746 | Msa0891590:CDS |
| AGCATCTCCGTTGGTGCTTC+CGG | 0.298447 | 6_1:+67294816 | Msa0891590:CDS |
| ACTAATAACTGATTCTTATA+AGG | 0.319688 | 6_1:-67296784 | None:intergenic |
| AATACAAAAGAAGGAAAGTT+TGG | 0.329196 | 6_1:-67292510 | None:intergenic |
| TCACAACAGCATCCCACTTC+AGG | 0.333624 | 6_1:-67294231 | None:intergenic |
| GTCGACAATTTCGCTCATAT+TGG | 0.336089 | 6_1:+67295613 | Msa0891590:CDS |
| CATGTGTTCCAACTTCTAAA+TGG | 0.341794 | 6_1:+67296666 | Msa0891590:CDS |
| GGAATCGTTTACCTAGTATC+TGG | 0.345805 | 6_1:+67294753 | Msa0891590:CDS |
| ATTGTCATCAATCTTGTGAT+TGG | 0.349416 | 6_1:+67295577 | Msa0891590:CDS |
| GAGAAGATGGGAAGTGGGTT+TGG | 0.375626 | 6_1:-67292460 | None:intergenic |
| GATATATATCATATAGATAA+AGG | 0.376372 | 6_1:+67296843 | Msa0891590:three_prime_UTR |
| GGAGACTTGTCTCATGCATT+TGG | 0.378901 | 6_1:+67294269 | Msa0891590:CDS |
| AGAGTGTGATATAGAGAAGA+TGG | 0.383268 | 6_1:-67292473 | None:intergenic |
| CTTGAACAACAATTTGGGTT+TGG | 0.389033 | 6_1:+67294355 | Msa0891590:CDS |
| TTCGCCTTGAACAACAATTT+GGG | 0.400132 | 6_1:+67294350 | Msa0891590:CDS |
| CATGATGTCCAACTAGTATC+TGG | 0.406441 | 6_1:-67292658 | None:intergenic |
| TCGCATTTCCATTTAGAAGT+TGG | 0.417696 | 6_1:-67296674 | None:intergenic |
| ATGATCAGTCTGGTCTTCAT+TGG | 0.423207 | 6_1:+67294325 | Msa0891590:CDS |
| CTCTCGTACTATTGATTGCC+TGG | 0.425859 | 6_1:+67295776 | Msa0891590:CDS |
| CAAACCCAAATTGTTGTTCA+AGG | 0.427904 | 6_1:-67294354 | None:intergenic |
| TGGTTTAGTGATGCTATTGC+GGG | 0.429270 | 6_1:+67296601 | Msa0891590:CDS |
| TTCCTGACAGGATTTCTCCT+TGG | 0.432706 | 6_1:+67295640 | Msa0891590:CDS |
| GACAATTTCGCTCATATTGG+TGG | 0.441282 | 6_1:+67295616 | Msa0891590:CDS |
| ATATTTCACTCTTCTCCAAC+AGG | 0.444821 | 6_1:-67296912 | None:intergenic |
| ATCAGTTATTAGTTTGTCGT+TGG | 0.446390 | 6_1:+67296794 | Msa0891590:three_prime_UTR |
| ACTCCAGTTTGTGATAAGTT+CGG | 0.447369 | 6_1:-67294871 | None:intergenic |
| ACACGCTGGAATCATTCATT+TGG | 0.450645 | 6_1:+67294294 | Msa0891590:CDS |
| GCGATGACAGTTAAACGAAT+AGG | 0.466599 | 6_1:+67296693 | Msa0891590:exon |
| GAGTGTGATATAGAGAAGAT+GGG | 0.467989 | 6_1:-67292472 | None:intergenic |
| AGAGATCTAGAGAGAGATGG+AGG | 0.474513 | 6_1:+67292577 | Msa0891590:CDS |
| GGAAGTGGGTTTGGTGAGAG+AGG | 0.480292 | 6_1:-67292451 | None:intergenic |
| TTCCCCGTCCTCAATTTGGT+TGG | 0.482477 | 6_1:+67295674 | Msa0891590:CDS |
| TTTCCGAACTTATCACAAAC+TGG | 0.485212 | 6_1:+67294868 | Msa0891590:CDS |
| TAGAAGTTGGAACACATGTC+AGG | 0.485216 | 6_1:-67296661 | None:intergenic |
| GTTTACCTAGTATCTGGATT+CGG | 0.485927 | 6_1:+67294759 | Msa0891590:CDS |
| GGTTTACCAATATGTTCTAT+GGG | 0.487504 | 6_1:+67295747 | Msa0891590:CDS |
| ATAGCTATACATAAAAGAAC+AGG | 0.488821 | 6_1:-67296727 | None:intergenic |
| TGGAAATTTGCAGTGAGGAT+AGG | 0.489071 | 6_1:+67294732 | Msa0891590:intron |
| TTGAAAGAGAATCCTTTGCT+TGG | 0.490540 | 6_1:+67292817 | Msa0891590:CDS |
| TTGAATGGTAGGTTATCCAT+TGG | 0.492130 | 6_1:+67296581 | Msa0891590:intron |
| GATATAGAGAAGATGGGAAG+TGG | 0.498304 | 6_1:-67292466 | None:intergenic |
| CAGATACTAGTTGGACATCA+TGG | 0.498885 | 6_1:+67292659 | Msa0891590:CDS |
| AGCAAAGGATTCTCTTTCAA+AGG | 0.499402 | 6_1:-67292814 | None:intergenic |
| ATACAACCCATAGAACATAT+TGG | 0.500183 | 6_1:-67295753 | None:intergenic |
| GACTTGAGGCGAACACCAGC+AGG | 0.504828 | 6_1:-67295715 | None:intergenic |
| TCTTGAACCAATACAAAAGA+AGG | 0.506248 | 6_1:-67292519 | None:intergenic |
| CTCTAGATCTCTCCCAGACA+TGG | 0.508385 | 6_1:-67292566 | None:intergenic |
| CACAACAGCATCCCACTTCA+GGG | 0.508924 | 6_1:-67294230 | None:intergenic |
| CATATTGGTGGATTCCTGAC+AGG | 0.513213 | 6_1:+67295628 | Msa0891590:CDS |
| AACCAAGGAGAAATCCTGTC+AGG | 0.521407 | 6_1:-67295642 | None:intergenic |
| GTTATGATCCAGATACTAGT+TGG | 0.521904 | 6_1:+67292650 | Msa0891590:CDS |
| TACCTAGTATCTGGATTCGG+TGG | 0.524332 | 6_1:+67294762 | Msa0891590:CDS |
| GCTTGTACCTATGTTTGTTG+TGG | 0.524538 | 6_1:+67292681 | Msa0891590:CDS |
| GGCAGCAAACATGATCAGTC+TGG | 0.524653 | 6_1:+67294315 | Msa0891590:CDS |
| TTGTGAATCATCACCAAGGA+TGG | 0.525415 | 6_1:+67294248 | Msa0891590:CDS |
| AAGAGCACCGGAAGCACCAA+CGG | 0.530069 | 6_1:-67294823 | None:intergenic |
| ATGAGACAAGTCTCCATCCT+TGG | 0.532446 | 6_1:-67294261 | None:intergenic |
| GCGCAGCGACATGTTCCTGC+TGG | 0.534637 | 6_1:+67295700 | Msa0891590:CDS |
| GAAGTGGGTTTGGTGAGAGA+GGG | 0.537929 | 6_1:-67292450 | None:intergenic |
| GCGGATACGACCACTGCCAT+TGG | 0.539605 | 6_1:+67296630 | Msa0891590:CDS |
| TAACCAACCAAATTGAGGAC+GGG | 0.543254 | 6_1:-67295677 | None:intergenic |
| ACGACAAGATCAGCAGGTAG+TGG | 0.545640 | 6_1:-67292369 | None:intergenic |
| AACCCTTACGTATCAGAAGA+AGG | 0.549064 | 6_1:-67292841 | None:intergenic |
| ATATAGAGAAGATGGGAAGT+GGG | 0.549967 | 6_1:-67292465 | None:intergenic |
| TCCCACCGAATCCAGATACT+AGG | 0.555103 | 6_1:-67294764 | None:intergenic |
| TCGCCTCAAGTCTAAGTACA+AGG | 0.555196 | 6_1:+67295726 | Msa0891590:CDS |
| CGAAGATGGGAGCCCTGAAG+TGG | 0.555545 | 6_1:+67294218 | Msa0891590:CDS |
| TGTGATAAGTTCGGAAAGCA+TGG | 0.557185 | 6_1:-67294862 | None:intergenic |
| TGCGCTAACCAACCAAATTG+AGG | 0.558542 | 6_1:-67295682 | None:intergenic |
| GGATCATAACCACTTGAAGT+TGG | 0.566480 | 6_1:-67292637 | None:intergenic |
| ACCTAGTATCTGGATTCGGT+GGG | 0.566887 | 6_1:+67294763 | Msa0891590:CDS |
| AGGGATTGTTGAATCTGAAA+CGG | 0.568705 | 6_1:-67292431 | None:intergenic |
| GGTAGTGACACCAATGGCAG+TGG | 0.569166 | 6_1:-67296640 | None:intergenic |
| TTGGTTTAGTGATGCTATTG+CGG | 0.570398 | 6_1:+67296600 | Msa0891590:CDS |
| AGATTAGCCACAACAAACAT+AGG | 0.571657 | 6_1:-67292688 | None:intergenic |
| CAATAGCATCACTAAACCAA+TGG | 0.573374 | 6_1:-67296597 | None:intergenic |
| GGGAGAGATCTAGAGAGAGA+TGG | 0.574429 | 6_1:+67292574 | Msa0891590:CDS |
| TCATAACCACTTGAAGTTGG+TGG | 0.579347 | 6_1:-67292634 | None:intergenic |
| GCTGTTCCACCAACTTCAAG+TGG | 0.584755 | 6_1:+67292628 | Msa0891590:CDS |
| ATGCTATTGCGGGGTGAAAG+CGG | 0.592655 | 6_1:+67296611 | Msa0891590:CDS |
| TAAAAGAACAGGAATAGCGC+AGG | 0.608845 | 6_1:-67296716 | None:intergenic |
| TCATGCATTTGGTTACACGC+TGG | 0.611101 | 6_1:+67294280 | Msa0891590:CDS |
| AACCAAATTGAGGACGGGGA+AGG | 0.621571 | 6_1:-67295672 | None:intergenic |
| AACCAACCAAATTGAGGACG+GGG | 0.621889 | 6_1:-67295676 | None:intergenic |
| TCAGAAGAAGGACCAAGCAA+AGG | 0.624296 | 6_1:-67292829 | None:intergenic |
| CTAACCAACCAAATTGAGGA+CGG | 0.637433 | 6_1:-67295678 | None:intergenic |
| AAACCTTGTACTTAGACTTG+AGG | 0.651465 | 6_1:-67295729 | None:intergenic |
| GAAGATGGGAGCCCTGAAGT+GGG | 0.651962 | 6_1:+67294219 | Msa0891590:CDS |
| TGAGCGAAATTGTCGACATG+TGG | 0.659405 | 6_1:-67295607 | None:intergenic |
| GAGATCTAGAGAGAGATGGA+GGG | 0.661813 | 6_1:+67292578 | Msa0891590:CDS |
| GGGGAAGGAGAATGAAACCA+AGG | 0.674315 | 6_1:-67295657 | None:intergenic |
| ATGTCAGGTAGTGACACCAA+TGG | 0.701971 | 6_1:-67296646 | None:intergenic |
| GGTTTAGTGATGCTATTGCG+GGG | 0.740371 | 6_1:+67296602 | Msa0891590:CDS |
| GCTGTTGTGAATCATCACCA+AGG | 0.777652 | 6_1:+67294244 | Msa0891590:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTATTCATAAGTTTGTTA+AGG | + | chr6_1:67292930-67292949 | Msa0891590:intron | 15.0% |
| !!! | AGTTAAATTGTTTTTGTATA+TGG | + | chr6_1:67293175-67293194 | Msa0891590:intron | 15.0% |
| !! | TAAGTCATTGATATAAAAAT+AGG | - | chr6_1:67294070-67294089 | None:intergenic | 15.0% |
| !!! | TATTTTTATATCAATGACTT+AGG | + | chr6_1:67294069-67294088 | Msa0891590:intron | 15.0% |
| !! | AGTTAACAAAAATAAATAGT+TGG | - | chr6_1:67295178-67295197 | None:intergenic | 15.0% |
| !! | TAATATCATCGTTTAATAAT+AGG | - | chr6_1:67296111-67296130 | None:intergenic | 15.0% |
| !!! | TTACAAATTGTTTCTTTTTT+TGG | + | chr6_1:67296755-67296774 | Msa0891590:three_prime_UTR | 15.0% |
| !! | GATATATATCATATAGATAA+AGG | + | chr6_1:67296843-67296862 | Msa0891590:three_prime_UTR | 15.0% |
| !!! | TTATGATTTTGTTTTAGCTT+AGG | + | chr6_1:67293505-67293524 | Msa0891590:intron | 20.0% |
| !!! | TATGATTTTGTTTTAGCTTA+GGG | + | chr6_1:67293506-67293525 | Msa0891590:intron | 20.0% |
| !!! | TTAGTGAAATTTTCAGTTTT+TGG | + | chr6_1:67293696-67293715 | Msa0891590:intron | 20.0% |
| !! | AAACATGAAAAACAAAACAT+GGG | - | chr6_1:67293763-67293782 | None:intergenic | 20.0% |
| !! | AAAACATGAAAAACAAAACA+TGG | - | chr6_1:67293764-67293783 | None:intergenic | 20.0% |
| !! | TATCAAAAACTAATATGTAG+TGG | + | chr6_1:67293882-67293901 | Msa0891590:intron | 20.0% |
| !!! | TTCGATTTTGATTAAGATTA+GGG | + | chr6_1:67293975-67293994 | Msa0891590:intron | 20.0% |
| !! | TTGATATAAAAATAGGATCA+AGG | - | chr6_1:67294063-67294082 | None:intergenic | 20.0% |
| !! | TTGTATTAAATAACGTATTG+CGG | + | chr6_1:67294511-67294530 | Msa0891590:intron | 20.0% |
| !!! | ATTTTACACAAACATATGAA+TGG | + | chr6_1:67294606-67294625 | Msa0891590:intron | 20.0% |
| !!! | CAAATTTCCAACAAATTTTT+TGG | - | chr6_1:67294722-67294741 | None:intergenic | 20.0% |
| !!! | ATATGACATGAATTATTTTG+AGG | + | chr6_1:67295233-67295252 | Msa0891590:intron | 20.0% |
| !! | ACAACTAATGACAAAATTAT+AGG | - | chr6_1:67295278-67295297 | None:intergenic | 20.0% |
| !! | TTGATTAAACATCTTATATC+TGG | + | chr6_1:67295453-67295472 | Msa0891590:intron | 20.0% |
| !! | TGATTAAACATCTTATATCT+GGG | + | chr6_1:67295454-67295473 | Msa0891590:intron | 20.0% |
| !! | TCGTTTAATAATAGGAATTT+GGG | - | chr6_1:67296103-67296122 | None:intergenic | 20.0% |
| !! | ATCGTTTAATAATAGGAATT+TGG | - | chr6_1:67296104-67296123 | None:intergenic | 20.0% |
| !! | ACAATTTATAAAACCTCTAA+AGG | - | chr6_1:67296459-67296478 | None:intergenic | 20.0% |
| !! | AATTGTCATTATCTATTGTT+AGG | + | chr6_1:67296473-67296492 | Msa0891590:intron | 20.0% |
| !! | TATCTATTGTTAGGAAAATA+AGG | + | chr6_1:67296482-67296501 | Msa0891590:intron | 20.0% |
| !!! | ACTAATAACTGATTCTTATA+AGG | - | chr6_1:67296787-67296806 | None:intergenic | 20.0% |
| !!! | CAATAATATATTTTACCTGT+TGG | + | chr6_1:67296897-67296916 | Msa0891590:three_prime_UTR | 20.0% |
| ! | AAGGAAAGTTTGGAAATTTA+TGG | - | chr6_1:67292503-67292522 | None:intergenic | 25.0% |
| ! | AATACAAAAGAAGGAAAGTT+TGG | - | chr6_1:67292513-67292532 | None:intergenic | 25.0% |
| !! | AAACTTTCCTTCTTTTGTAT+TGG | + | chr6_1:67292512-67292531 | Msa0891590:five_prime_UTR | 25.0% |
| !! | TCAAAACCAAGATTTTTACT+GGG | - | chr6_1:67292751-67292770 | None:intergenic | 25.0% |
| !! | ATCAAAACCAAGATTTTTAC+TGG | - | chr6_1:67292752-67292771 | None:intergenic | 25.0% |
| !!! | AGTAAAAATCTTGGTTTTGA+TGG | + | chr6_1:67292751-67292770 | Msa0891590:CDS | 25.0% |
| ! | AGTTTATGAAAAAACAGCTT+AGG | + | chr6_1:67292954-67292973 | Msa0891590:intron | 25.0% |
| ! | AAAAAATAAGCCAATCCAAA+CGG | + | chr6_1:67293047-67293066 | Msa0891590:intron | 25.0% |
| ! | GCAATACCAAAATCATTTAA+GGG | - | chr6_1:67293074-67293093 | None:intergenic | 25.0% |
| ! | AGCAATACCAAAATCATTTA+AGG | - | chr6_1:67293075-67293094 | None:intergenic | 25.0% |
| ! | CATAAAATACAATTATGTCG+TGG | + | chr6_1:67293456-67293475 | Msa0891590:intron | 25.0% |
| !!! | ATGATTTTGTTTTAGCTTAG+GGG | + | chr6_1:67293507-67293526 | Msa0891590:intron | 25.0% |
| ! | ATTAACATAAAAACCAGATC+AGG | - | chr6_1:67293599-67293618 | None:intergenic | 25.0% |
| ! | AATGTTATAGTACTTTGACT+TGG | + | chr6_1:67293616-67293635 | Msa0891590:intron | 25.0% |
| ! | ACTAAACAGGGTTTAAATAA+AGG | - | chr6_1:67293927-67293946 | None:intergenic | 25.0% |
| ! | CTAATCTTAATCAAAATCGA+AGG | - | chr6_1:67293976-67293995 | None:intergenic | 25.0% |
| !!! | CTTCGATTTTGATTAAGATT+AGG | + | chr6_1:67293974-67293993 | Msa0891590:intron | 25.0% |
| !!! | TCGATTTTGATTAAGATTAG+GGG | + | chr6_1:67293976-67293995 | Msa0891590:intron | 25.0% |
| !! | GAGTTACATGAAAATTTGTT+TGG | + | chr6_1:67293999-67294018 | Msa0891590:intron | 25.0% |
| ! | TATAAAAATAGGATCAAGGT+AGG | - | chr6_1:67294059-67294078 | None:intergenic | 25.0% |
| ! | TTTGTGTAAAATTCCCTAAA+TGG | - | chr6_1:67294598-67294617 | None:intergenic | 25.0% |
| ! | GTTATGACCAAAAAATTTGT+TGG | + | chr6_1:67294712-67294731 | Msa0891590:intron | 25.0% |
| ! | ATTAACTACACTCACTTTAT+TGG | - | chr6_1:67294904-67294923 | None:intergenic | 25.0% |
| !! | ACGATTCGGAAAAAAATATT+TGG | + | chr6_1:67295364-67295383 | Msa0891590:intron | 25.0% |
| !! | ACCAAACTTTTATACAATTC+GGG | - | chr6_1:67296002-67296021 | None:intergenic | 25.0% |
| !! | CACCAAACTTTTATACAATT+CGG | - | chr6_1:67296003-67296022 | None:intergenic | 25.0% |
| ! | TTAATAATAGGAATTTGGGA+CGG | - | chr6_1:67296099-67296118 | None:intergenic | 25.0% |
| ! | TACTTCATTTAACTAACATG+TGG | - | chr6_1:67296355-67296374 | None:intergenic | 25.0% |
| ! | AATTTAAATGTGACCTTTAG+AGG | + | chr6_1:67296443-67296462 | Msa0891590:intron | 25.0% |
| ! | ATAGCTATACATAAAAGAAC+AGG | - | chr6_1:67296730-67296749 | None:intergenic | 25.0% |
| !! | GATTTATGTGTATTTTGTGT+GGG | + | chr6_1:67296816-67296835 | Msa0891590:three_prime_UTR | 25.0% |
| TCTTGAACCAATACAAAAGA+AGG | - | chr6_1:67292522-67292541 | None:intergenic | 30.0% | |
| AATTGTCCCAGTAAAAATCT+TGG | + | chr6_1:67292742-67292761 | Msa0891590:CDS | 30.0% | |
| !!! | CTTGTGTTTTGAAGTTTCTT+GGG | + | chr6_1:67292776-67292795 | Msa0891590:CDS | 30.0% |
| AAAAATAAGCCAATCCAAAC+GGG | + | chr6_1:67293048-67293067 | Msa0891590:intron | 30.0% | |
| !! | ATGATTTTGGTATTGCTTTC+TGG | + | chr6_1:67293078-67293097 | Msa0891590:intron | 30.0% |
| ATAAGCTGTTTATCCAAACA+GGG | - | chr6_1:67293104-67293123 | None:intergenic | 30.0% | |
| AATAAGCTGTTTATCCAAAC+AGG | - | chr6_1:67293105-67293124 | None:intergenic | 30.0% | |
| AACAGCTTATTTGTAGCTTA+AGG | + | chr6_1:67293114-67293133 | Msa0891590:intron | 30.0% | |
| ! | CTAAACCAGACAAATTTTCA+TGG | - | chr6_1:67293538-67293557 | None:intergenic | 30.0% |
| ! | ATTTGTCTGGTTTAGTGAAT+TGG | + | chr6_1:67293543-67293562 | Msa0891590:intron | 30.0% |
| TGGTTTAGTGAATTGGATTT+GGG | + | chr6_1:67293550-67293569 | Msa0891590:intron | 30.0% | |
| GCATGATTATCTACTAAACA+GGG | - | chr6_1:67293939-67293958 | None:intergenic | 30.0% | |
| TGCATGATTATCTACTAAAC+AGG | - | chr6_1:67293940-67293959 | None:intergenic | 30.0% | |
| !!! | CGATTTTGATTAAGATTAGG+GGG | + | chr6_1:67293977-67293996 | Msa0891590:intron | 30.0% |
| ! | ATTTGTTTGGTTCAGTGAAT+TGG | + | chr6_1:67294012-67294031 | Msa0891590:intron | 30.0% |
| TCAGATATGAGTATCTAAAC+AGG | - | chr6_1:67294096-67294115 | None:intergenic | 30.0% | |
| !! | TTTTTGAAGACTAACGAAGA+TGG | + | chr6_1:67294204-67294223 | Msa0891590:intron | 30.0% |
| !! | TTTTGAAGACTAACGAAGAT+GGG | + | chr6_1:67294205-67294224 | Msa0891590:intron | 30.0% |
| ATGTCAATTAGCATCTATAG+TGG | - | chr6_1:67294487-67294506 | None:intergenic | 30.0% | |
| GAGATTCATCTTAGTGAATT+GGG | - | chr6_1:67295118-67295137 | None:intergenic | 30.0% | |
| ATAAGATTCTGTTGACGATT+CGG | + | chr6_1:67295350-67295369 | Msa0891590:intron | 30.0% | |
| ATAACTGAGTATCAGAGAAA+TGG | - | chr6_1:67295418-67295437 | None:intergenic | 30.0% | |
| !! | ACCATTTTTCTGTATCTTGT+AGG | + | chr6_1:67295525-67295544 | Msa0891590:intron | 30.0% |
| ACCTACAAGATACAGAAAAA+TGG | - | chr6_1:67295529-67295548 | None:intergenic | 30.0% | |
| ATTGTCATCAATCTTGTGAT+TGG | + | chr6_1:67295577-67295596 | Msa0891590:CDS | 30.0% | |
| AGGTTTACCAATATGTTCTA+TGG | + | chr6_1:67295746-67295765 | Msa0891590:CDS | 30.0% | |
| GGTTTACCAATATGTTCTAT+GGG | + | chr6_1:67295747-67295766 | Msa0891590:CDS | 30.0% | |
| ATACAACCCATAGAACATAT+TGG | - | chr6_1:67295756-67295775 | None:intergenic | 30.0% | |
| TAACAGTTATGTTGCTAATG+AGG | - | chr6_1:67295820-67295839 | None:intergenic | 30.0% | |
| TCATTAGCAACATAACTGTT+AGG | + | chr6_1:67295819-67295838 | Msa0891590:intron | 30.0% | |
| CATTAGCAACATAACTGTTA+GGG | + | chr6_1:67295820-67295839 | Msa0891590:intron | 30.0% | |
| ! | TAAACTAGTAACCCTTGTTT+AGG | + | chr6_1:67295883-67295902 | Msa0891590:intron | 30.0% |
| TCATGAATAGTCCTAAACAA+GGG | - | chr6_1:67295897-67295916 | None:intergenic | 30.0% | |
| ATCATGAATAGTCCTAAACA+AGG | - | chr6_1:67295898-67295917 | None:intergenic | 30.0% | |
| ! | GTTTAGGACTATTCATGATT+CGG | + | chr6_1:67295899-67295918 | Msa0891590:intron | 30.0% |
| ! | CTTTTACCAAACTGTTGTAA+TGG | - | chr6_1:67295949-67295968 | None:intergenic | 30.0% |
| CTAATATTCAGTCAAGTGTT+TGG | - | chr6_1:67296137-67296156 | None:intergenic | 30.0% | |
| CAAACACTTGACTGAATATT+AGG | + | chr6_1:67296135-67296154 | Msa0891590:intron | 30.0% | |
| ! | CTTCACAGTTTGATTCTTTT+CGG | - | chr6_1:67296188-67296207 | None:intergenic | 30.0% |
| CTATTGTTAGGAAAATAAGG+TGG | + | chr6_1:67296485-67296504 | Msa0891590:intron | 30.0% | |
| !! | ATCAGTTATTAGTTTGTCGT+TGG | + | chr6_1:67296794-67296813 | Msa0891590:three_prime_UTR | 30.0% |
| ! | GGATTTATGTGTATTTTGTG+TGG | + | chr6_1:67296815-67296834 | Msa0891590:three_prime_UTR | 30.0% |
| AGGGATTGTTGAATCTGAAA+CGG | - | chr6_1:67292434-67292453 | None:intergenic | 35.0% | |
| ATATAGAGAAGATGGGAAGT+GGG | - | chr6_1:67292468-67292487 | None:intergenic | 35.0% | |
| GAGTGTGATATAGAGAAGAT+GGG | - | chr6_1:67292475-67292494 | None:intergenic | 35.0% | |
| AGAGTGTGATATAGAGAAGA+TGG | - | chr6_1:67292476-67292495 | None:intergenic | 35.0% | |
| GTTATGATCCAGATACTAGT+TGG | + | chr6_1:67292650-67292669 | Msa0891590:CDS | 35.0% | |
| ! | AGATTAGCCACAACAAACAT+AGG | - | chr6_1:67292691-67292710 | None:intergenic | 35.0% |
| !!! | GCTTGTGTTTTGAAGTTTCT+TGG | + | chr6_1:67292775-67292794 | Msa0891590:CDS | 35.0% |
| AGCAAAGGATTCTCTTTCAA+AGG | - | chr6_1:67292817-67292836 | None:intergenic | 35.0% | |
| TTGAAAGAGAATCCTTTGCT+TGG | + | chr6_1:67292817-67292836 | Msa0891590:CDS | 35.0% | |
| TATTTGTAGCTTAAGGCACA+AGG | + | chr6_1:67293121-67293140 | Msa0891590:intron | 35.0% | |
| ATTTGTAGCTTAAGGCACAA+GGG | + | chr6_1:67293122-67293141 | Msa0891590:intron | 35.0% | |
| ACACAAATAAGAATCCAGAC+AGG | + | chr6_1:67293327-67293346 | Msa0891590:intron | 35.0% | |
| !!! | ATTTTGTTTTAGCTTAGGGG+TGG | + | chr6_1:67293510-67293529 | Msa0891590:intron | 35.0% |
| TGGTTCCATGAAAATTTGTC+TGG | + | chr6_1:67293530-67293549 | Msa0891590:intron | 35.0% | |
| CTGGTTTAGTGAATTGGATT+TGG | + | chr6_1:67293549-67293568 | Msa0891590:intron | 35.0% | |
| GGTTTAGTGAATTGGATTTG+GGG | + | chr6_1:67293551-67293570 | Msa0891590:intron | 35.0% | |
| GTTTAGTGAATTGGATTTGG+GGG | + | chr6_1:67293552-67293571 | Msa0891590:intron | 35.0% | |
| ! | CTTTTAGTCGAAAACTGTCA+TGG | + | chr6_1:67293834-67293853 | Msa0891590:intron | 35.0% |
| TTGGTTCAGTGAATTGGATA+TGG | + | chr6_1:67294018-67294037 | Msa0891590:intron | 35.0% | |
| TGGTTCAGTGAATTGGATAT+GGG | + | chr6_1:67294019-67294038 | Msa0891590:intron | 35.0% | |
| TACCGTACTACACAAGAATT+CGG | - | chr6_1:67294136-67294155 | None:intergenic | 35.0% | |
| TAGTACGGTAGCATAGATTT+AGG | + | chr6_1:67294146-67294165 | Msa0891590:intron | 35.0% | |
| ATTCGCCTTGAACAACAATT+TGG | + | chr6_1:67294349-67294368 | Msa0891590:CDS | 35.0% | |
| TTCGCCTTGAACAACAATTT+GGG | + | chr6_1:67294350-67294369 | Msa0891590:CDS | 35.0% | |
| ! | CAAACCCAAATTGTTGTTCA+AGG | - | chr6_1:67294357-67294376 | None:intergenic | 35.0% |
| ! | CTTGAACAACAATTTGGGTT+TGG | + | chr6_1:67294355-67294374 | Msa0891590:CDS | 35.0% |
| CCTTTCAGTGTTATCAATTG+CGG | + | chr6_1:67294416-67294435 | Msa0891590:intron | 35.0% | |
| ACCAATGTTGTCAAATAGCA+GGG | - | chr6_1:67294574-67294593 | None:intergenic | 35.0% | |
| AACCAATGTTGTCAAATAGC+AGG | - | chr6_1:67294575-67294594 | None:intergenic | 35.0% | |
| !! | TGACAACATTGGTTCCATTT+AGG | + | chr6_1:67294581-67294600 | Msa0891590:intron | 35.0% |
| !! | GACAACATTGGTTCCATTTA+GGG | + | chr6_1:67294582-67294601 | Msa0891590:intron | 35.0% |
| GCTTGCAGATAGGTATAAAA+CGG | - | chr6_1:67294648-67294667 | None:intergenic | 35.0% | |
| AGGTAAATAAGCTTGCAGAT+AGG | - | chr6_1:67294658-67294677 | None:intergenic | 35.0% | |
| TATCTGCAAGCTTATTTACC+TGG | + | chr6_1:67294657-67294676 | Msa0891590:intron | 35.0% | |
| TTTGTTGGAAATTTGCAGTG+AGG | + | chr6_1:67294727-67294746 | Msa0891590:intron | 35.0% | |
| GTTTACCTAGTATCTGGATT+CGG | + | chr6_1:67294759-67294778 | Msa0891590:CDS | 35.0% | |
| !! | ATTAGAAAAAGCATCTCCGT+TGG | + | chr6_1:67294807-67294826 | Msa0891590:CDS | 35.0% |
| TTTCCGAACTTATCACAAAC+TGG | + | chr6_1:67294868-67294887 | Msa0891590:CDS | 35.0% | |
| ACTCCAGTTTGTGATAAGTT+CGG | - | chr6_1:67294874-67294893 | None:intergenic | 35.0% | |
| GCATCTAATGTGTATCATTC+TGG | + | chr6_1:67295069-67295088 | Msa0891590:intron | 35.0% | |
| CGAGATTCATCTTAGTGAAT+TGG | - | chr6_1:67295119-67295138 | None:intergenic | 35.0% | |
| AAACCTTGTACTTAGACTTG+AGG | - | chr6_1:67295732-67295751 | None:intergenic | 35.0% | |
| ACTGTTGTAATGGTTCAGTT+TGG | - | chr6_1:67295939-67295958 | None:intergenic | 35.0% | |
| ACTGAACCATTACAACAGTT+TGG | + | chr6_1:67295940-67295959 | Msa0891590:intron | 35.0% | |
| GGTAAAAGCTGAACTGTTAA+TGG | + | chr6_1:67295961-67295980 | Msa0891590:intron | 35.0% | |
| ! | AACTTTTATACAATTCGGGC+TGG | - | chr6_1:67295998-67296017 | None:intergenic | 35.0% |
| GCCCGAATTGTATAAAAGTT+TGG | + | chr6_1:67295998-67296017 | Msa0891590:intron | 35.0% | |
| ! | AAAGTAGTTCAGGTTAGGTT+CGG | - | chr6_1:67296042-67296061 | None:intergenic | 35.0% |
| ! | CTGTAAAAGTAGTTCAGGTT+AGG | - | chr6_1:67296047-67296066 | None:intergenic | 35.0% |
| GTTAGCTGTAAAAGTAGTTC+AGG | - | chr6_1:67296052-67296071 | None:intergenic | 35.0% | |
| CGAAAAGAATCAAACTGTGA+AGG | + | chr6_1:67296186-67296205 | Msa0891590:intron | 35.0% | |
| !!! | TTCACGAGTTCAGTTTTGTT+CGG | - | chr6_1:67296222-67296241 | None:intergenic | 35.0% |
| CTAAACTGACTAAACTGTGA+CGG | - | chr6_1:67296248-67296267 | None:intergenic | 35.0% | |
| !! | TCAGTTTAGTCTTTTCAGTG+CGG | + | chr6_1:67296259-67296278 | Msa0891590:intron | 35.0% |
| ! | TGGTTTAACGGTTCAGTTTT+TGG | + | chr6_1:67296284-67296303 | Msa0891590:intron | 35.0% |
| ! | CACTGTATTCGTTTGTTGAA+TGG | + | chr6_1:67296566-67296585 | Msa0891590:intron | 35.0% |
| ! | GTATTCGTTTGTTGAATGGT+AGG | + | chr6_1:67296570-67296589 | Msa0891590:intron | 35.0% |
| TTGAATGGTAGGTTATCCAT+TGG | + | chr6_1:67296581-67296600 | Msa0891590:intron | 35.0% | |
| CAATAGCATCACTAAACCAA+TGG | - | chr6_1:67296600-67296619 | None:intergenic | 35.0% | |
| TTGGTTTAGTGATGCTATTG+CGG | + | chr6_1:67296600-67296619 | Msa0891590:CDS | 35.0% | |
| CATGTGTTCCAACTTCTAAA+TGG | + | chr6_1:67296666-67296685 | Msa0891590:CDS | 35.0% | |
| TCGCATTTCCATTTAGAAGT+TGG | - | chr6_1:67296677-67296696 | None:intergenic | 35.0% | |
| GAAAAAACGACAAGATCAGC+AGG | - | chr6_1:67292378-67292397 | None:intergenic | 40.0% | |
| GATATAGAGAAGATGGGAAG+TGG | - | chr6_1:67292469-67292488 | None:intergenic | 40.0% | |
| AGAGGGAAAAAAACCATGTC+TGG | + | chr6_1:67292553-67292572 | Msa0891590:exon | 40.0% | |
| GAGGGAAAAAAACCATGTCT+GGG | + | chr6_1:67292554-67292573 | Msa0891590:exon | 40.0% | |
| TCATAACCACTTGAAGTTGG+TGG | - | chr6_1:67292637-67292656 | None:intergenic | 40.0% | |
| GGATCATAACCACTTGAAGT+TGG | - | chr6_1:67292640-67292659 | None:intergenic | 40.0% | |
| CATGATGTCCAACTAGTATC+TGG | - | chr6_1:67292661-67292680 | None:intergenic | 40.0% | |
| CAGATACTAGTTGGACATCA+TGG | + | chr6_1:67292659-67292678 | Msa0891590:CDS | 40.0% | |
| ! | GCTTGTACCTATGTTTGTTG+TGG | + | chr6_1:67292681-67292700 | Msa0891590:CDS | 40.0% |
| GTCCTTCTTCTGATACGTAA+GGG | + | chr6_1:67292839-67292858 | Msa0891590:intron | 40.0% | |
| AACCCTTACGTATCAGAAGA+AGG | - | chr6_1:67292844-67292863 | None:intergenic | 40.0% | |
| AAATCATTTAAGGGCCCGTT+TGG | - | chr6_1:67293065-67293084 | None:intergenic | 40.0% | |
| ! | AACGGGCCCTTAAATGATTT+TGG | + | chr6_1:67293065-67293084 | Msa0891590:intron | 40.0% |
| ! | GCTGATTTCGTAAGCTATCA+TGG | + | chr6_1:67293203-67293222 | Msa0891590:intron | 40.0% |
| TGTCATGGCAGTCTTAAATG+TGG | + | chr6_1:67293849-67293868 | Msa0891590:intron | 40.0% | |
| !! | AAATCGAAGGCACTTCTACT+AGG | - | chr6_1:67293963-67293982 | None:intergenic | 40.0% |
| GGTTCAGTGAATTGGATATG+GGG | + | chr6_1:67294020-67294039 | Msa0891590:intron | 40.0% | |
| ACCGTACTACACAAGAATTC+GGG | - | chr6_1:67294135-67294154 | None:intergenic | 40.0% | |
| TTGTGAATCATCACCAAGGA+TGG | + | chr6_1:67294248-67294267 | Msa0891590:CDS | 40.0% | |
| ACACGCTGGAATCATTCATT+TGG | + | chr6_1:67294294-67294313 | Msa0891590:CDS | 40.0% | |
| ! | ATGATCAGTCTGGTCTTCAT+TGG | + | chr6_1:67294325-67294344 | Msa0891590:CDS | 40.0% |
| ! | CCGCAATTGATAACACTGAA+AGG | - | chr6_1:67294419-67294438 | None:intergenic | 40.0% |
| TTGCGGATCGTGGAAAATAA+CGG | + | chr6_1:67294433-67294452 | Msa0891590:intron | 40.0% | |
| CTTGAACACATAAATTCGCC+AGG | - | chr6_1:67294678-67294697 | None:intergenic | 40.0% | |
| TGGAAATTTGCAGTGAGGAT+AGG | + | chr6_1:67294732-67294751 | Msa0891590:intron | 40.0% | |
| GGAATCGTTTACCTAGTATC+TGG | + | chr6_1:67294753-67294772 | Msa0891590:CDS | 40.0% | |
| ! | AAGAAGTCCAAAAAGAGCAC+CGG | - | chr6_1:67294838-67294857 | None:intergenic | 40.0% |
| TGTGATAAGTTCGGAAAGCA+TGG | - | chr6_1:67294865-67294884 | None:intergenic | 40.0% | |
| CAGAGAGCGATAATTAGACA+TGG | - | chr6_1:67294942-67294961 | None:intergenic | 40.0% | |
| ! | TTGGATTCACGCTTTGAATC+TGG | + | chr6_1:67295383-67295402 | Msa0891590:intron | 40.0% |
| GTCGACAATTTCGCTCATAT+TGG | + | chr6_1:67295613-67295632 | Msa0891590:CDS | 40.0% | |
| GACAATTTCGCTCATATTGG+TGG | + | chr6_1:67295616-67295635 | Msa0891590:CDS | 40.0% | |
| TAACCAACCAAATTGAGGAC+GGG | - | chr6_1:67295680-67295699 | None:intergenic | 40.0% | |
| CTAACCAACCAAATTGAGGA+CGG | - | chr6_1:67295681-67295700 | None:intergenic | 40.0% | |
| ATTCGAGAAAGGAACTTACC+AGG | - | chr6_1:67295797-67295816 | None:intergenic | 40.0% | |
| TGCTAATGAGGATTCGAGAA+AGG | - | chr6_1:67295808-67295827 | None:intergenic | 40.0% | |
| !! | GACTATTCATGATTCGGTTC+AGG | + | chr6_1:67295905-67295924 | Msa0891590:intron | 40.0% |
| !! | ATTCATGATTCGGTTCAGGT+AGG | + | chr6_1:67295909-67295928 | Msa0891590:intron | 40.0% |
| !! | TTAGTCTTTTCAGTGCGGTT+TGG | + | chr6_1:67296264-67296283 | Msa0891590:intron | 40.0% |
| !! | TTCAGTGCGGTTTGGTTTAA+CGG | + | chr6_1:67296272-67296291 | Msa0891590:intron | 40.0% |
| TGGTTTAGTGATGCTATTGC+GGG | + | chr6_1:67296601-67296620 | Msa0891590:CDS | 40.0% | |
| TAGAAGTTGGAACACATGTC+AGG | - | chr6_1:67296664-67296683 | None:intergenic | 40.0% | |
| GCGATGACAGTTAAACGAAT+AGG | + | chr6_1:67296693-67296712 | Msa0891590:exon | 40.0% | |
| TAAAAGAACAGGAATAGCGC+AGG | - | chr6_1:67296719-67296738 | None:intergenic | 40.0% | |
| TTCAAGAGAGAGAGAGAGAG+AGG | + | chr6_1:67292535-67292554 | Msa0891590:five_prime_UTR | 45.0% | |
| TCAAGAGAGAGAGAGAGAGA+GGG | + | chr6_1:67292536-67292555 | Msa0891590:five_prime_UTR | 45.0% | |
| AGAGATCTAGAGAGAGATGG+AGG | + | chr6_1:67292577-67292596 | Msa0891590:CDS | 45.0% | |
| GAGATCTAGAGAGAGATGGA+GGG | + | chr6_1:67292578-67292597 | Msa0891590:CDS | 45.0% | |
| TCAGAAGAAGGACCAAGCAA+AGG | - | chr6_1:67292832-67292851 | None:intergenic | 45.0% | |
| GGTCCTTCTTCTGATACGTA+AGG | + | chr6_1:67292838-67292857 | Msa0891590:intron | 45.0% | |
| ATTTAAGGGCCCGTTTGGAT+TGG | - | chr6_1:67293060-67293079 | None:intergenic | 45.0% | |
| ! | TATTGCTTTCTGGCCCTGTT+TGG | + | chr6_1:67293088-67293107 | Msa0891590:intron | 45.0% |
| AAGAATCCAGACAGGCTAGT+TGG | + | chr6_1:67293335-67293354 | Msa0891590:intron | 45.0% | |
| GTTGGAAACCATCATAGCTG+CGG | + | chr6_1:67293353-67293372 | Msa0891590:intron | 45.0% | |
| TAATCATGCCGCAGCTATGA+TGG | - | chr6_1:67293364-67293383 | None:intergenic | 45.0% | |
| CTATAATTGCAATCGCGCTC+TGG | + | chr6_1:67293424-67293443 | Msa0891590:intron | 45.0% | |
| ATATGTAGTGGCCAAGATCG+CGG | + | chr6_1:67293894-67293913 | Msa0891590:intron | 45.0% | |
| GCCCGAATTCTTGTGTAGTA+CGG | + | chr6_1:67294131-67294150 | Msa0891590:intron | 45.0% | |
| GCTGTTGTGAATCATCACCA+AGG | + | chr6_1:67294244-67294263 | Msa0891590:CDS | 45.0% | |
| ATGAGACAAGTCTCCATCCT+TGG | - | chr6_1:67294264-67294283 | None:intergenic | 45.0% | |
| GGAGACTTGTCTCATGCATT+TGG | + | chr6_1:67294269-67294288 | Msa0891590:CDS | 45.0% | |
| TCATGCATTTGGTTACACGC+TGG | + | chr6_1:67294280-67294299 | Msa0891590:CDS | 45.0% | |
| GTGTTATCAATTGCGGATCG+TGG | + | chr6_1:67294423-67294442 | Msa0891590:intron | 45.0% | |
| ATAGTGGCACTATAGCGTAG+CGG | - | chr6_1:67294471-67294490 | None:intergenic | 45.0% | |
| ! | GCCCTGCTATTTGACAACAT+TGG | + | chr6_1:67294570-67294589 | Msa0891590:intron | 45.0% |
| TACCTAGTATCTGGATTCGG+TGG | + | chr6_1:67294762-67294781 | Msa0891590:CDS | 45.0% | |
| ! | ACCTAGTATCTGGATTCGGT+GGG | + | chr6_1:67294763-67294782 | Msa0891590:CDS | 45.0% |
| ! | GGTGCTCTTTTTGGACTTCT+TGG | + | chr6_1:67294837-67294856 | Msa0891590:CDS | 45.0% |
| TGAGCGAAATTGTCGACATG+TGG | - | chr6_1:67295610-67295629 | None:intergenic | 45.0% | |
| !! | CATATTGGTGGATTCCTGAC+AGG | + | chr6_1:67295628-67295647 | Msa0891590:CDS | 45.0% |
| TTCCTGACAGGATTTCTCCT+TGG | + | chr6_1:67295640-67295659 | Msa0891590:CDS | 45.0% | |
| AACCAAGGAGAAATCCTGTC+AGG | - | chr6_1:67295645-67295664 | None:intergenic | 45.0% | |
| AACCAACCAAATTGAGGACG+GGG | - | chr6_1:67295679-67295698 | None:intergenic | 45.0% | |
| TGCGCTAACCAACCAAATTG+AGG | - | chr6_1:67295685-67295704 | None:intergenic | 45.0% | |
| TCGCCTCAAGTCTAAGTACA+AGG | + | chr6_1:67295726-67295745 | Msa0891590:CDS | 45.0% | |
| ! | CTCTCGTACTATTGATTGCC+TGG | + | chr6_1:67295776-67295795 | Msa0891590:CDS | 45.0% |
| !! | AGCCTTGTTCAGCAAAGTAG+AGG | + | chr6_1:67295846-67295865 | Msa0891590:intron | 45.0% |
| ! | GCCTTGTTCAGCAAAGTAGA+GGG | + | chr6_1:67295847-67295866 | Msa0891590:intron | 45.0% |
| TCCCTCTACTTTGCTGAACA+AGG | - | chr6_1:67295851-67295870 | None:intergenic | 45.0% | |
| TTGTTCAGCAAAGTAGAGGG+AGG | + | chr6_1:67295850-67295869 | Msa0891590:intron | 45.0% | |
| TGTTCAGCAAAGTAGAGGGA+GGG | + | chr6_1:67295851-67295870 | Msa0891590:intron | 45.0% | |
| TAGGTTCGGAAACACAGAAC+TGG | - | chr6_1:67296028-67296047 | None:intergenic | 45.0% | |
| TGGGACGGTTCAGTTCAAAA+AGG | - | chr6_1:67296084-67296103 | None:intergenic | 45.0% | |
| ACTCGCGTTATAACACGAGT+TGG | - | chr6_1:67296320-67296339 | None:intergenic | 45.0% | |
| GGTTTAGTGATGCTATTGCG+GGG | + | chr6_1:67296602-67296621 | Msa0891590:CDS | 45.0% | |
| ATGTCAGGTAGTGACACCAA+TGG | - | chr6_1:67296649-67296668 | None:intergenic | 45.0% | |
| ACGACAAGATCAGCAGGTAG+TGG | - | chr6_1:67292372-67292391 | None:intergenic | 50.0% | |
| !! | GAAGTGGGTTTGGTGAGAGA+GGG | - | chr6_1:67292453-67292472 | None:intergenic | 50.0% |
| ! | GAGAAGATGGGAAGTGGGTT+TGG | - | chr6_1:67292463-67292482 | None:intergenic | 50.0% |
| CTCTAGATCTCTCCCAGACA+TGG | - | chr6_1:67292569-67292588 | None:intergenic | 50.0% | |
| GGGAGAGATCTAGAGAGAGA+TGG | + | chr6_1:67292574-67292593 | Msa0891590:CDS | 50.0% | |
| GCTGTTCCACCAACTTCAAG+TGG | + | chr6_1:67292628-67292647 | Msa0891590:CDS | 50.0% | |
| ! | TGGTTTCCAACTAGCCTGTC+TGG | - | chr6_1:67293344-67293363 | None:intergenic | 50.0% |
| CAATTATGTCGTGGCCCAGA+TGG | + | chr6_1:67293465-67293484 | Msa0891590:intron | 50.0% | |
| GGACTGAACCAGGAAAAACC+AGG | - | chr6_1:67293578-67293597 | None:intergenic | 50.0% | |
| TTCCTGGTTCAGTCCTGATC+TGG | + | chr6_1:67293583-67293602 | Msa0891590:intron | 50.0% | |
| AACCAGATCAGGACTGAACC+AGG | - | chr6_1:67293588-67293607 | None:intergenic | 50.0% | |
| CACAACAGCATCCCACTTCA+GGG | - | chr6_1:67294233-67294252 | None:intergenic | 50.0% | |
| TCACAACAGCATCCCACTTC+AGG | - | chr6_1:67294234-67294253 | None:intergenic | 50.0% | |
| GGCAGCAAACATGATCAGTC+TGG | + | chr6_1:67294315-67294334 | Msa0891590:CDS | 50.0% | |
| ATAGCAGGGCTACAGTGAAG+CGG | - | chr6_1:67294560-67294579 | None:intergenic | 50.0% | |
| TCCCACCGAATCCAGATACT+AGG | - | chr6_1:67294767-67294786 | None:intergenic | 50.0% | |
| GGGGAAGGAGAATGAAACCA+AGG | - | chr6_1:67295660-67295679 | None:intergenic | 50.0% | |
| AACCAAATTGAGGACGGGGA+AGG | - | chr6_1:67295675-67295694 | None:intergenic | 50.0% | |
| TTCCCCGTCCTCAATTTGGT+TGG | + | chr6_1:67295674-67295693 | Msa0891590:CDS | 50.0% | |
| ATGCTATTGCGGGGTGAAAG+CGG | + | chr6_1:67296611-67296630 | Msa0891590:CDS | 50.0% | |
| !! | GGAAGTGGGTTTGGTGAGAG+AGG | - | chr6_1:67292454-67292473 | None:intergenic | 55.0% |
| TTATGTCGTGGCCCAGATGG+CGG | + | chr6_1:67293468-67293487 | Msa0891590:intron | 55.0% | |
| AACGTTCGCAACCGCCATCT+GGG | - | chr6_1:67293482-67293501 | None:intergenic | 55.0% | |
| AAACGTTCGCAACCGCCATC+TGG | - | chr6_1:67293483-67293502 | None:intergenic | 55.0% | |
| GTGAATTGGATTTGGGGGCC+TGG | + | chr6_1:67293557-67293576 | Msa0891590:intron | 55.0% | |
| !! | TTTGGGGGCCTGGTTTTTCC+TGG | + | chr6_1:67293567-67293586 | Msa0891590:intron | 55.0% |
| AAGGTCAGCAACCGCGATCT+TGG | - | chr6_1:67293908-67293927 | None:intergenic | 55.0% | |
| GAAGATGGGAGCCCTGAAGT+GGG | + | chr6_1:67294219-67294238 | Msa0891590:CDS | 55.0% | |
| ! | AGCATCTCCGTTGGTGCTTC+CGG | + | chr6_1:67294816-67294835 | Msa0891590:CDS | 55.0% |
| !! | AAGAGCACCGGAAGCACCAA+CGG | - | chr6_1:67294826-67294845 | None:intergenic | 55.0% |
| ! | GGTGCTTCCGGTGCTCTTTT+TGG | + | chr6_1:67294828-67294847 | Msa0891590:CDS | 55.0% |
| CTCCTTCCCCGTCCTCAATT+TGG | + | chr6_1:67295670-67295689 | Msa0891590:CDS | 55.0% | |
| GGTAGTGACACCAATGGCAG+TGG | - | chr6_1:67296643-67296662 | None:intergenic | 55.0% | |
| CGAAGATGGGAGCCCTGAAG+TGG | + | chr6_1:67294218-67294237 | Msa0891590:CDS | 60.0% | |
| GACTTGAGGCGAACACCAGC+AGG | - | chr6_1:67295718-67295737 | None:intergenic | 60.0% | |
| GCGGATACGACCACTGCCAT+TGG | + | chr6_1:67296630-67296649 | Msa0891590:CDS | 60.0% | |
| GCGCAGCGACATGTTCCTGC+TGG | + | chr6_1:67295700-67295719 | Msa0891590:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 67292322 | 67296926 | 67292322 | ID=Msa0891590;Name=Msa0891590 |
| chr6_1 | mRNA | 67292322 | 67296926 | 67292322 | ID=Msa0891590-mRNA-1;Parent=Msa0891590;Name=Msa0891590-mRNA-1;_AED=0.04;_eAED=0.04;_QI=246|1|1|1|1|0.8|5|220|326 |
| chr6_1 | exon | 67292322 | 67292854 | 67292322 | ID=Msa0891590-mRNA-1:exon:11978;Parent=Msa0891590-mRNA-1 |
| chr6_1 | exon | 67294213 | 67294376 | 67294213 | ID=Msa0891590-mRNA-1:exon:11979;Parent=Msa0891590-mRNA-1 |
| chr6_1 | exon | 67294745 | 67294908 | 67294745 | ID=Msa0891590-mRNA-1:exon:11980;Parent=Msa0891590-mRNA-1 |
| chr6_1 | exon | 67295547 | 67295797 | 67295547 | ID=Msa0891590-mRNA-1:exon:11981;Parent=Msa0891590-mRNA-1 |
| chr6_1 | exon | 67296592 | 67296926 | 67296592 | ID=Msa0891590-mRNA-1:exon:11982;Parent=Msa0891590-mRNA-1 |
| chr6_1 | five_prime_UTR | 67292322 | 67292567 | 67292322 | ID=Msa0891590-mRNA-1:five_prime_utr;Parent=Msa0891590-mRNA-1 |
| chr6_1 | CDS | 67292568 | 67292854 | 67292568 | ID=Msa0891590-mRNA-1:cds;Parent=Msa0891590-mRNA-1 |
| chr6_1 | CDS | 67294213 | 67294376 | 67294213 | ID=Msa0891590-mRNA-1:cds;Parent=Msa0891590-mRNA-1 |
| chr6_1 | CDS | 67294745 | 67294908 | 67294745 | ID=Msa0891590-mRNA-1:cds;Parent=Msa0891590-mRNA-1 |
| chr6_1 | CDS | 67295547 | 67295797 | 67295547 | ID=Msa0891590-mRNA-1:cds;Parent=Msa0891590-mRNA-1 |
| chr6_1 | CDS | 67296592 | 67296706 | 67296592 | ID=Msa0891590-mRNA-1:cds;Parent=Msa0891590-mRNA-1 |
| chr6_1 | three_prime_UTR | 67296707 | 67296926 | 67296707 | ID=Msa0891590-mRNA-1:three_prime_utr;Parent=Msa0891590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
