AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0922100

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0922100 MtrunA17_Chr6g0479321 93.333 420 25 2 1 419 1 418 0.0 776
Msa0922100 MtrunA17_Chr8g0393251 65.394 393 121 5 41 419 30 421 9.24e-168 477
Msa0922100 MtrunA17_Chr5g0410131 43.868 424 215 12 1 417 1 408 1.01e-104 316
Msa0922100 MtrunA17_Chr8g0339211 32.479 351 217 6 69 414 32 367 4.06e-54 184
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0922100 AT1G48450.1 64.850 367 114 5 63 419 62 423 1.46e-156 449
Msa0922100 AT3G17800.1 67.039 358 111 4 65 419 68 421 2.13e-152 438
Msa0922100 AT3G17800.2 67.039 358 111 4 65 419 74 427 3.39e-152 438
Msa0922100 AT1G32160.1 46.369 358 179 5 64 417 56 404 2.36e-103 313
Msa0922100 AT1G48450.3 64.807 233 70 4 63 288 62 289 1.88e-94 287
Msa0922100 AT1G48450.2 64.807 233 70 4 63 288 62 289 4.26e-94 286
Msa0922100 AT3G07310.1 35.112 356 185 7 69 419 42 356 1.38e-55 188
Msa0922100 AT3G07310.2 35.507 276 134 5 144 414 11 247 2.04e-46 160
Msa0922100 AT5G48590.1 33.846 390 173 11 39 414 10 328 3.39e-46 162

Find 146 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGCCACTTGGCCCTACTTC+TGG 0.226525 6_2:+60092939 Msa0922100:CDS
ATTGGTAGTGCAGAAATTTA+TGG 0.229511 6_2:+60092795 Msa0922100:CDS
GCAGTTTCTCTCTCAGATTT+TGG 0.245902 6_2:+60090600 Msa0922100:CDS
CAGTCCCAAGCCTGGGTAAA+AGG 0.258552 6_2:+60093944 Msa0922100:three_prime_UTR
CCATTCCCTTGCTTGGAGTT+AGG 0.259524 6_2:-60090454 None:intergenic
ACCAACCAGTGAAAAGTATT+TGG 0.260304 6_2:-60093638 None:intergenic
TCAAATAAAGTGCAATATTC+TGG 0.268190 6_2:-60093889 None:intergenic
TCTGGTGTTATAACAATTTC+CGG 0.272174 6_2:-60093381 None:intergenic
TCAAGCCAAGCAGGGACTTC+GGG 0.273317 6_2:-60093195 None:intergenic
CTTACAGGAGAACGGTAAAT+TGG 0.290792 6_2:-60088693 None:intergenic
AAAGAAAAGCCTTCTGCTTC+AGG 0.311495 6_2:+60090703 Msa0922100:CDS
GAAGAGTACTTTGTGGGAAA+TGG 0.323267 6_2:-60088468 None:intergenic
AATGATGCTGACGGCCTCTT+TGG 0.326321 6_2:-60093328 None:intergenic
CTTGAGAGTGGCATCAGTTC+TGG 0.336332 6_2:+60093213 Msa0922100:CDS
GGTGTTGTATATAGTGGATT+TGG 0.346035 6_2:+60093658 Msa0922100:three_prime_UTR
GAACTCAGTTTAGGACAAAA+TGG 0.353196 6_2:-60093533 None:intergenic
CAATCTCTTTCTCTCTCTCT+AGG 0.354489 6_2:+60088416 Msa0922100:five_prime_UTR
CTACTTCTGGGTAACCGATC+AGG 0.368634 6_2:+60092952 Msa0922100:CDS
GAAATGATTCGATACCTTAC+AGG 0.369799 6_2:-60088708 None:intergenic
TTGTTTCGTCTTCCAAAGTT+TGG 0.370425 6_2:-60093131 None:intergenic
GCCATGTGAATTTCTTCCCT+TGG 0.373621 6_2:-60093572 None:intergenic
TCCATAACGCCACATCCTTC+TGG 0.373664 6_2:+60092841 Msa0922100:CDS
AATCATACTGAAGCATTGTT+TGG 0.374610 6_2:+60093354 Msa0922100:CDS
CTTCTGGTCAAGTTGATTCA+TGG 0.375052 6_2:+60092857 Msa0922100:CDS
GAAATGGGAGAGATAATATA+TGG 0.381474 6_2:-60088452 None:intergenic
GAGTTAGCAGAACTCAGTTT+AGG 0.390416 6_2:-60093542 None:intergenic
CAATTTACCGTTCTCCTGTA+AGG 0.393600 6_2:+60088694 Msa0922100:CDS
TCTCCTTCCATTCCCTTGCT+TGG 0.396301 6_2:-60090461 None:intergenic
AAGAGTACTTTGTGGGAAAT+GGG 0.396771 6_2:-60088467 None:intergenic
AAGCTGTGAACTTATTTGTA+AGG 0.399234 6_2:-60093764 None:intergenic
GAAAACTATTAGCCAAACTT+TGG 0.403655 6_2:+60093119 Msa0922100:CDS
TCTCTATCCGACCCACTTAG+AGG 0.406423 6_2:+60094013 Msa0922100:three_prime_UTR
ATCATCAAAATTAGCATTGG+TGG 0.408519 6_2:+60093432 Msa0922100:CDS
TGAGAGAGAAACTGCCCTAC+TGG 0.415392 6_2:-60090592 None:intergenic
CAGTTATTTCATTGGTTCAC+GGG 0.417754 6_2:-60094081 None:intergenic
GTGGCTTTCGATCAACTCAT+AGG 0.419342 6_2:-60092923 None:intergenic
AGGGGCGTAAAACAAAATTA+TGG 0.419930 6_2:-60088346 None:intergenic
ACCAGAAGGATGTGGCGTTA+TGG 0.430448 6_2:-60092842 None:intergenic
TCATCATCTGCAGAGTCATC+TGG 0.430784 6_2:+60090532 Msa0922100:CDS
CTGGTTGGTGTTGTATATAG+TGG 0.431173 6_2:+60093652 Msa0922100:three_prime_UTR
TAAAAGGAATGGGTTGTGTT+AGG 0.433143 6_2:+60093960 Msa0922100:three_prime_UTR
TGTTAGTTACAGTAAGAGTC+AGG 0.437921 6_2:-60088366 None:intergenic
CAGGAGAATTGCTGAGGTAA+AGG 0.440956 6_2:+60092732 Msa0922100:intron
CTCAAGCCAAGCAGGGACTT+CGG 0.447735 6_2:-60093196 None:intergenic
TGAAGCATTGTTTGGTAGAC+CGG 0.453301 6_2:+60093362 Msa0922100:CDS
CTAGAGAGAGAGAAAGAGAT+TGG 0.454104 6_2:-60088415 None:intergenic
AGCCACTTGGCCCTACTTCT+GGG 0.465078 6_2:+60092940 Msa0922100:CDS
AATCTCTTTCTCTCTCTCTA+GGG 0.465461 6_2:+60088417 Msa0922100:five_prime_UTR
GGCATCAGTTCTGGTGCAAA+TGG 0.465642 6_2:+60093222 Msa0922100:CDS
TTAGAGAGAGAAAGGTAAAG+TGG 0.468309 6_2:-60088389 None:intergenic
ATGCCACTCTCAAGCCAAGC+AGG 0.468609 6_2:-60093204 None:intergenic
TGTGAACTTATTTGTAAGGA+AGG 0.468881 6_2:-60093760 None:intergenic
CCCACCCCGAAGTCCCTGCT+TGG 0.469772 6_2:+60093190 Msa0922100:CDS
GATATCAAAGGACATCATAT+AGG 0.470294 6_2:-60093274 None:intergenic
TACATAGCCAGTCCCAAGCC+TGG 0.477496 6_2:+60093936 Msa0922100:three_prime_UTR
CAGTTCTGGTGCAAATGGTC+AGG 0.477762 6_2:+60093227 Msa0922100:CDS
ACTGGAGACTCGAGCTTTAG+TGG 0.480349 6_2:-60090574 None:intergenic
TAGCTCAGATCAGCAAACTA+AGG 0.482150 6_2:+60092989 Msa0922100:CDS
GAACGTCCGGCGAACATTGA+CGG 0.483201 6_2:-60088650 None:intergenic
AGAATTGAAGAGTACTTTGT+GGG 0.484827 6_2:-60088474 None:intergenic
AATTTCTTCCCTTGGATGCA+TGG 0.485279 6_2:-60093564 None:intergenic
TATGCTGCGTCAGTAATGTA+TGG 0.487588 6_2:+60093024 Msa0922100:CDS
CCAAGCCTGGGTAAAAGGAA+TGG 0.493686 6_2:+60093949 Msa0922100:three_prime_UTR
GATTCATGGCCAAGCGAAGA+TGG 0.496795 6_2:+60092871 Msa0922100:CDS
TCAGTTATTTCATTGGTTCA+CGG 0.500145 6_2:-60094082 None:intergenic
CAATTGTAAAAGATATATAG+AGG 0.500889 6_2:-60093847 None:intergenic
GCGAACATTGACGGCTTACA+CGG 0.501761 6_2:-60088641 None:intergenic
CCTAACTCCAAGCAAGGGAA+TGG 0.504270 6_2:+60090454 Msa0922100:CDS
TAGTTTGCTGATCTGAGCTA+CGG 0.504391 6_2:-60092986 None:intergenic
CATAACCATCACGATCAGAT+TGG 0.507362 6_2:-60090675 None:intergenic
TACTTCTGGGTAACCGATCA+GGG 0.513490 6_2:+60092953 Msa0922100:CDS
TGTTGTCCAACGGTTCCAGC+TGG 0.516143 6_2:+60093062 Msa0922100:CDS
TTCTCAAGCGTGTTGTCCAA+CGG 0.524011 6_2:+60093052 Msa0922100:CDS
CAGCAAACTAAGGGTAGGAC+AGG 0.526223 6_2:+60092999 Msa0922100:CDS
CTGATCGGTTACCCAGAAGT+AGG 0.530654 6_2:-60092951 None:intergenic
CCAAGCAGGGACTTCGGGGT+GGG 0.541193 6_2:-60093190 None:intergenic
CTGGAGACTCGAGCTTTAGT+GGG 0.541450 6_2:-60090573 None:intergenic
GAAATCATCAAAATTAGCAT+TGG 0.542762 6_2:+60093429 Msa0922100:CDS
CAAGCCTGGGTAAAAGGAAT+GGG 0.546381 6_2:+60093950 Msa0922100:three_prime_UTR
CTGCTAACTCCATGCATCCA+AGG 0.548168 6_2:+60093555 Msa0922100:three_prime_UTR
TAAGTTTAACGCCGTGCGTG+TGG 0.552595 6_2:-60088588 None:intergenic
CTGAGGTAAAGGCGAAAGAG+AGG 0.562909 6_2:+60092743 Msa0922100:CDS
GAAGACGAAACAAGAATCGC+TGG 0.564276 6_2:+60093141 Msa0922100:CDS
CAAGCCAAGCAGGGACTTCG+GGG 0.566373 6_2:-60093194 None:intergenic
ATGAAAACTGTCTACAAAGT+CGG 0.569760 6_2:+60093693 Msa0922100:three_prime_UTR
GCCAAGCAGGGACTTCGGGG+TGG 0.570752 6_2:-60093191 None:intergenic
AGATAACAGTGTCTAGGTTG+CGG 0.571238 6_2:+60093250 Msa0922100:CDS
TGGAAGTAGAAGGGGTCTTG+TGG 0.574441 6_2:+60090492 Msa0922100:CDS
TCCTATCCCTCTAAGTGGGT+CGG 0.574538 6_2:-60094020 None:intergenic
GTCCCTGCTTGGCTTGAGAG+TGG 0.575084 6_2:+60093201 Msa0922100:CDS
AGAAGGATGTGGCGTTATGG+AGG 0.578345 6_2:-60092839 None:intergenic
ACATAGCCAGTCCCAAGCCT+GGG 0.579349 6_2:+60093937 Msa0922100:three_prime_UTR
ACTCCAAGCAAGGGAATGGA+AGG 0.580646 6_2:+60090458 Msa0922100:CDS
TGATCGGTTACCCAGAAGTA+GGG 0.580969 6_2:-60092950 None:intergenic
GGAGGGTACTAAAGAAACAT+TGG 0.581684 6_2:-60092821 None:intergenic
TGCTAACTCCATGCATCCAA+GGG 0.583407 6_2:+60093556 Msa0922100:three_prime_UTR
CTCTATCCGACCCACTTAGA+GGG 0.585560 6_2:+60094014 Msa0922100:three_prime_UTR
TCTGTACCTAACTCCAAGCA+AGG 0.586167 6_2:+60090448 Msa0922100:CDS
GGGTGGGACATAACTTGAGA+AGG 0.586260 6_2:-60093174 None:intergenic
GAAATTGTTATAACACCAGA+GGG 0.587177 6_2:+60093384 Msa0922100:CDS
CTAAAGCTCGAGTCTCCAGT+AGG 0.590159 6_2:+60090577 Msa0922100:CDS
TCAAGTCCTATCCCTCTAAG+TGG 0.593371 6_2:-60094025 None:intergenic
TGAGTTGATCGAAAGCCACT+TGG 0.595615 6_2:+60092927 Msa0922100:CDS
CATGAATCAACTTGACCAGA+AGG 0.595770 6_2:-60092856 None:intergenic
AAACAACTAGTGATAAACTC+TGG 0.596572 6_2:-60093805 None:intergenic
TGCCACTCTCAAGCCAAGCA+GGG 0.600263 6_2:-60093203 None:intergenic
TCCGACCCACTTAGAGGGAT+AGG 0.600936 6_2:+60094019 Msa0922100:three_prime_UTR
CTGTAATGTCTCGATATCAA+AGG 0.601046 6_2:-60093286 None:intergenic
GTCAGGAGATAACAGTGTCT+AGG 0.602177 6_2:+60093244 Msa0922100:CDS
TCAACTTGACCAGAAGGATG+TGG 0.603982 6_2:-60092850 None:intergenic
AAGCGAAGATGGAAAACTTG+AGG 0.605727 6_2:+60092882 Msa0922100:CDS
GGAAATTGTTATAACACCAG+AGG 0.605883 6_2:+60093383 Msa0922100:CDS
TTACACGGCCGTGCAGATGA+CGG 0.606348 6_2:-60088626 None:intergenic
TGTAAGCCGTCAATGTTCGC+CGG 0.609393 6_2:+60088644 Msa0922100:CDS
ATGATTCTCAATGATGCTGA+CGG 0.610568 6_2:-60093337 None:intergenic
TTGAGAGCTATGTTGACTCA+AGG 0.611300 6_2:+60093508 Msa0922100:CDS
CAATTCCAATCTGATCGTGA+TGG 0.611573 6_2:+60090670 Msa0922100:CDS
AAGTCAGTTCCTGAAGCAGA+AGG 0.615870 6_2:-60090712 None:intergenic
GTTAGTTACAGTAAGAGTCA+GGG 0.617046 6_2:-60088365 None:intergenic
AGAAGAAATATTGTACACAT+TGG 0.619936 6_2:+60092777 Msa0922100:CDS
TAAAGCTCGAGTCTCCAGTA+GGG 0.620318 6_2:+60090578 Msa0922100:CDS
GAAGGATGTGGCGTTATGGA+GGG 0.624843 6_2:-60092838 None:intergenic
AGTTATTTCATTGGTTCACG+GGG 0.626855 6_2:-60094080 None:intergenic
CAGATCAGCAAACTAAGGGT+AGG 0.626934 6_2:+60092994 Msa0922100:CDS
AGCTCAGATCAGCAAACTAA+GGG 0.627652 6_2:+60092990 Msa0922100:CDS
TTACAATTGAGCAGTAGTGG+AGG 0.628440 6_2:+60093861 Msa0922100:three_prime_UTR
GGGACTGGCTATGTATAGCA+AGG 0.634652 6_2:-60093928 None:intergenic
CTGTTCTTCCGTCATCTGCA+CGG 0.634971 6_2:+60088618 Msa0922100:CDS
TTCGATACCTTACAGGAGAA+CGG 0.638391 6_2:-60088701 None:intergenic
AGGAGAACGGTAAATTGGAA+CGG 0.644048 6_2:-60088688 None:intergenic
CAAGTCCTATCCCTCTAAGT+GGG 0.648013 6_2:-60094024 None:intergenic
GAAAATGGAAGCCACACGCA+CGG 0.650218 6_2:+60088577 Msa0922100:exon
ATTGGAACGGAAAAGCGAAA+CGG 0.658303 6_2:-60088675 None:intergenic
TACCCAGAAGTAGGGCCAAG+TGG 0.658409 6_2:-60092942 None:intergenic
ACTGCAGCAGACATGAGATG+TGG 0.659084 6_2:-60090631 None:intergenic
GGAACGGAAAAGCGAAACGG+TGG 0.659337 6_2:-60088672 None:intergenic
AATTGTAAAAGATATATAGA+GGG 0.659466 6_2:-60093846 None:intergenic
CTGCAGCAGACATGAGATGT+GGG 0.661921 6_2:-60090630 None:intergenic
TGCAACGATTAGATCCAAAG+AGG 0.669949 6_2:+60093314 Msa0922100:CDS
GGTGGGACATAACTTGAGAA+GGG 0.672914 6_2:-60093173 None:intergenic
CTGTACCTAACTCCAAGCAA+GGG 0.675862 6_2:+60090449 Msa0922100:CDS
TTAGTTACAGTAAGAGTCAG+GGG 0.676676 6_2:-60088364 None:intergenic
TCCAAGGGAAGAAATTCACA+TGG 0.678797 6_2:+60093571 Msa0922100:three_prime_UTR
TGGAGACTCGAGCTTTAGTG+GGG 0.681767 6_2:-60090572 None:intergenic
GTTATTTCATTGGTTCACGG+GGG 0.736451 6_2:-60094079 None:intergenic
AAATTGTTATAACACCAGAG+GGG 0.801812 6_2:+60093385 Msa0922100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATAAATAAATAAATA+AGG + chr6_2:60088905-60088924 Msa0922100:intron 0.0%
!!! TTTTTTTATATTTTGATTTG+TGG + chr6_2:60088757-60088776 Msa0922100:intron 10.0%
!!! TTTTTTTAAATATATCTTGT+TGG + chr6_2:60091090-60091109 Msa0922100:intron 10.0%
!!! TGTTTTTTTTTTTTTAAAGA+AGG - chr6_2:60091171-60091190 None:intergenic 10.0%
!!! GTTTTTTTTTTTTTTAAAGA+AGG - chr6_2:60091204-60091223 None:intergenic 10.0%
!!! TATCTTTTTTCTTTTTTTTA+TGG - chr6_2:60092369-60092388 None:intergenic 10.0%
!!! AACAATATCTTTTTTTTTTA+TGG - chr6_2:60092533-60092552 None:intergenic 10.0%
!!! TTTTTTTGTTTCTATTATAT+TGG + chr6_2:60092617-60092636 Msa0922100:intron 10.0%
!!! TTCTGTTTTTTTTGTTTTTT+TGG + chr6_2:60088796-60088815 Msa0922100:intron 15.0%
!! TATTCAAAATTAACAAACAT+AGG - chr6_2:60088889-60088908 None:intergenic 15.0%
!!! TAGTTGATTTTAATAGTTTA+GGG - chr6_2:60089219-60089238 None:intergenic 15.0%
!!! TTAGTTGATTTTAATAGTTT+AGG - chr6_2:60089220-60089239 None:intergenic 15.0%
!! TTATTAGTAATATTCCAAAA+AGG - chr6_2:60089542-60089561 None:intergenic 15.0%
!!! TTTTTGGAATATTACTAATA+AGG + chr6_2:60089541-60089560 Msa0922100:intron 15.0%
!!! TTTTGGAATATTACTAATAA+GGG + chr6_2:60089542-60089561 Msa0922100:intron 15.0%
!!! TAACATGTTTTATAATACTT+TGG + chr6_2:60090141-60090160 Msa0922100:intron 15.0%
!! ATATTGCATTTATATTTGAT+TGG + chr6_2:60090291-60090310 Msa0922100:intron 15.0%
!!! AGATAATTTTTTATCTGATT+TGG + chr6_2:60091263-60091282 Msa0922100:intron 15.0%
!!! GATAATTTTTTATCTGATTT+GGG + chr6_2:60091264-60091283 Msa0922100:intron 15.0%
!!! TTTTCAATTCTCTATTTATT+AGG + chr6_2:60091368-60091387 Msa0922100:intron 15.0%
!!! ATATTTTATTGATGTATTTG+TGG + chr6_2:60092320-60092339 Msa0922100:intron 15.0%
!! AATTGTAAAAGATATATAGA+GGG - chr6_2:60093849-60093868 None:intergenic 15.0%
!! ATTAACTGGTATAAAGAATA+AGG + chr6_2:60089285-60089304 Msa0922100:intron 20.0%
!! AATTCATTTGAATGATGTAA+GGG + chr6_2:60089453-60089472 Msa0922100:intron 20.0%
!!! TTTGGAATATTACTAATAAG+GGG + chr6_2:60089543-60089562 Msa0922100:intron 20.0%
!!! ACAATTTTAGTGACTAAATT+CGG + chr6_2:60089779-60089798 Msa0922100:intron 20.0%
!!! ATATGTATGGGATTTTTTAT+TGG + chr6_2:60089929-60089948 Msa0922100:intron 20.0%
!!! TTTATAATACTTTGGTTTTG+TGG + chr6_2:60090149-60090168 Msa0922100:intron 20.0%
!! ATATAAATGCAATATAGAAC+TGG - chr6_2:60090286-60090305 None:intergenic 20.0%
!! AATAGAATACGTTAATTTAG+TGG - chr6_2:60090358-60090377 None:intergenic 20.0%
!!! ATTTTAATACATGAGATTTG+AGG + chr6_2:60090375-60090394 Msa0922100:intron 20.0%
!!! TTTTAATACATGAGATTTGA+GGG + chr6_2:60090376-60090395 Msa0922100:intron 20.0%
!! ATTAGTCAAACTTAGATAAA+AGG + chr6_2:60090823-60090842 Msa0922100:intron 20.0%
!!! TTCAAGTTTTATCTGTATTT+TGG + chr6_2:60091299-60091318 Msa0922100:intron 20.0%
!!! TCAAGTTTTATCTGTATTTT+GGG + chr6_2:60091300-60091319 Msa0922100:intron 20.0%
!! GAATTGAAAAGAAAAAAAGT+AGG - chr6_2:60091358-60091377 None:intergenic 20.0%
!! TGTACACATATATATATACA+AGG - chr6_2:60091405-60091424 None:intergenic 20.0%
!! AATGAAAATAATGCCTATAA+TGG + chr6_2:60091537-60091556 Msa0922100:intron 20.0%
!!! ATTAAGCTTTTATCCATTAT+AGG - chr6_2:60091553-60091572 None:intergenic 20.0%
!!! TACAAAATGTTTTTAATGAC+CGG + chr6_2:60091607-60091626 Msa0922100:intron 20.0%
!!! CATTAGTAGTAATTTGTTTT+CGG + chr6_2:60091710-60091729 Msa0922100:intron 20.0%
!! AAAGAATTACATCAATGATA+AGG + chr6_2:60091936-60091955 Msa0922100:intron 20.0%
!! TTATGGATTCAAACTAAATA+TGG - chr6_2:60092352-60092371 None:intergenic 20.0%
!! TTATGGATTCAAACTAAATA+TGG - chr6_2:60092352-60092371 None:intergenic 20.0%
!! TCAATAGTGCTAATAAAAAT+TGG - chr6_2:60093615-60093634 None:intergenic 20.0%
!! CAATTGTAAAAGATATATAG+AGG - chr6_2:60093850-60093869 None:intergenic 20.0%
!!! AAATTTTATGTTGATTGTTG+AGG - chr6_2:60093986-60094005 None:intergenic 20.0%
! GTTGAATGAAAGAAGAAAAA+AGG - chr6_2:60088530-60088549 None:intergenic 25.0%
! GATATTGTTACTCGAATTAA+CGG + chr6_2:60088966-60088985 Msa0922100:intron 25.0%
!!! GTCATTTTCCCAAATTTTTA+TGG + chr6_2:60089114-60089133 Msa0922100:intron 25.0%
!! ATGGATGAGAGTATAATTTA+AGG - chr6_2:60089247-60089266 None:intergenic 25.0%
! TCTTTATACCAGTTAATTGA+AGG - chr6_2:60089282-60089301 None:intergenic 25.0%
! GAATTCATTTGAATGATGTA+AGG + chr6_2:60089452-60089471 Msa0922100:intron 25.0%
! TGTTGTATATAAACTTCTCT+TGG + chr6_2:60089699-60089718 Msa0922100:intron 25.0%
!!! GTGTTTATTTTAAGGTGTAT+CGG + chr6_2:60089744-60089763 Msa0922100:intron 25.0%
! AGTTATAAGACTTGAAATCA+TGG - chr6_2:60089839-60089858 None:intergenic 25.0%
! TAAAAAATCCCATACATATG+TGG - chr6_2:60089928-60089947 None:intergenic 25.0%
!! ATTTTCTATTGGAAGTAGAA+GGG + chr6_2:60090483-60090502 Msa0922100:CDS 25.0%
! CTCAGATATAAGAACATATA+TGG - chr6_2:60090785-60090804 None:intergenic 25.0%
! TTATATCGATGAATTTGATG+AGG - chr6_2:60091001-60091020 None:intergenic 25.0%
! ATGTAACTTTATCATATTGC+CGG - chr6_2:60091629-60091648 None:intergenic 25.0%
! AACTGCTAATATGTTTATGT+AGG - chr6_2:60091775-60091794 None:intergenic 25.0%
! TATATAAACACATTTGTGGT+TGG - chr6_2:60091825-60091844 None:intergenic 25.0%
! AACCACAAATGTGTTTATAT+AGG + chr6_2:60091824-60091843 Msa0922100:intron 25.0%
!! ATTTTACAAAGTAAAAGCTG+TGG + chr6_2:60091979-60091998 Msa0922100:intron 25.0%
!!! AATTGTTTTAAGTCAGTGTT+TGG + chr6_2:60092223-60092242 Msa0922100:intron 25.0%
!!! TATTGTTTTAAGTTAGCGTT+TGG + chr6_2:60092387-60092406 Msa0922100:intron 25.0%
!!! CCTCACTTTTTTTTCATTTT+TGG - chr6_2:60092679-60092698 None:intergenic 25.0%
! CCAAAAATGAAAAAAAAGTG+AGG + chr6_2:60092676-60092695 Msa0922100:intron 25.0%
! AGAAGAAATATTGTACACAT+TGG + chr6_2:60092777-60092796 Msa0922100:CDS 25.0%
! GAAATCATCAAAATTAGCAT+TGG + chr6_2:60093429-60093448 Msa0922100:CDS 25.0%
!!! TTACTTTTGGTTCTTTTCTT+TGG + chr6_2:60093481-60093500 Msa0922100:CDS 25.0%
!!! TACTTTTGGTTCTTTTCTTT+GGG + chr6_2:60093482-60093501 Msa0922100:CDS 25.0%
! TCAAATAAAGTGCAATATTC+TGG - chr6_2:60093892-60093911 None:intergenic 25.0%
!! ATTGGATTTTAGAGAGAGAA+AGG - chr6_2:60088400-60088419 None:intergenic 30.0%
GAAATGGGAGAGATAATATA+TGG - chr6_2:60088455-60088474 None:intergenic 30.0%
!! AGAATTGAAGAGTACTTTGT+GGG - chr6_2:60088477-60088496 None:intergenic 30.0%
!! AAGAATTGAAGAGTACTTTG+TGG - chr6_2:60088478-60088497 None:intergenic 30.0%
! GCTTTTATCACAGTTGAAAA+TGG + chr6_2:60088562-60088581 Msa0922100:intron 30.0%
GAATTGCATGTTGAAATTGA+TGG + chr6_2:60088845-60088864 Msa0922100:intron 30.0%
GTCAACAGCCATAAAAATTT+GGG - chr6_2:60089125-60089144 None:intergenic 30.0%
TGTCAACAGCCATAAAAATT+TGG - chr6_2:60089126-60089145 None:intergenic 30.0%
TAATAGTTTAGGGACCAAAT+TGG - chr6_2:60089209-60089228 None:intergenic 30.0%
TGTACTCTCATTCATCAATT+TGG - chr6_2:60089312-60089331 None:intergenic 30.0%
!! ATGAATGAGAGTACAGTTTT+AGG + chr6_2:60089317-60089336 Msa0922100:intron 30.0%
TAGTTCAGAGACCAAAAAAT+TGG + chr6_2:60089359-60089378 Msa0922100:intron 30.0%
! TTGATAGTAGATCAAGATAG+AGG + chr6_2:60089482-60089501 Msa0922100:intron 30.0%
! GATGAACATTTTGCAATTCT+AGG + chr6_2:60089514-60089533 Msa0922100:intron 30.0%
TAGCATACTTCATGTTGAAA+CGG - chr6_2:60089587-60089606 None:intergenic 30.0%
!!! CAATGTGGGTGTTTATTTTA+AGG + chr6_2:60089736-60089755 Msa0922100:intron 30.0%
ATAAGACTTGAAATCATGGT+TGG - chr6_2:60089835-60089854 None:intergenic 30.0%
TAACTTAGCCACATATGTAT+GGG + chr6_2:60089917-60089936 Msa0922100:intron 30.0%
! TTCTCGATTGTGAAAAGTAT+TGG - chr6_2:60089963-60089982 None:intergenic 30.0%
! GCAAAGTTTGAATTAGTTTC+AGG - chr6_2:60089997-60090016 None:intergenic 30.0%
! AAACTTTGCTGATGATGTAT+TGG + chr6_2:60090008-60090027 Msa0922100:intron 30.0%
!! TTTTGCTTGCTGATTGTTTT+TGG + chr6_2:60090406-60090425 Msa0922100:intron 30.0%
! AATGGAAGGAGATTTTCTAT+TGG + chr6_2:60090472-60090491 Msa0922100:CDS 30.0%
! GATTTTCTATTGGAAGTAGA+AGG + chr6_2:60090482-60090501 Msa0922100:CDS 30.0%
! TTTTCTATTGGAAGTAGAAG+GGG + chr6_2:60090484-60090503 Msa0922100:CDS 30.0%
ATGTAGCATCTATCAATCAA+TGG - chr6_2:60090861-60090880 None:intergenic 30.0%
TCACGATAAAATAATAGTGC+TGG - chr6_2:60091031-60091050 None:intergenic 30.0%
TCTCTATTTATTAGGTAGTC+TGG + chr6_2:60091376-60091395 Msa0922100:intron 30.0%
GTAGGATAATCTAACCTAAT+TGG - chr6_2:60091757-60091776 None:intergenic 30.0%
TAAACATATTAGCAGTTGAC+TGG + chr6_2:60091778-60091797 Msa0922100:intron 30.0%
AGCCTATATAAACACATTTG+TGG - chr6_2:60091829-60091848 None:intergenic 30.0%
TATAGGCTATTCTAACGTAA+TGG + chr6_2:60091841-60091860 Msa0922100:intron 30.0%
ATAGGCTATTCTAACGTAAT+GGG + chr6_2:60091842-60091861 Msa0922100:intron 30.0%
! GTCTTACTAAAGTACTAAGA+GGG + chr6_2:60091864-60091883 Msa0922100:intron 30.0%
! CATCAATTGGTTTCACTTAA+TGG + chr6_2:60092058-60092077 Msa0922100:intron 30.0%
CCTCTTTATAGGTAAAAGTA+AGG - chr6_2:60092139-60092158 None:intergenic 30.0%
!! CCTTACTTTTACCTATAAAG+AGG + chr6_2:60092136-60092155 Msa0922100:intron 30.0%
ATCACTTAGAACCTCTTTAT+AGG - chr6_2:60092150-60092169 None:intergenic 30.0%
!! ATTGGTAGTGCAGAAATTTA+TGG + chr6_2:60092795-60092814 Msa0922100:CDS 30.0%
! TTTTTATTGTCTTTTCCAGC+TGG - chr6_2:60093080-60093099 None:intergenic 30.0%
GAAAACTATTAGCCAAACTT+TGG + chr6_2:60093119-60093138 Msa0922100:CDS 30.0%
GATATCAAAGGACATCATAT+AGG - chr6_2:60093277-60093296 None:intergenic 30.0%
!! AATCATACTGAAGCATTGTT+TGG + chr6_2:60093354-60093373 Msa0922100:CDS 30.0%
!! TCTGGTGTTATAACAATTTC+CGG - chr6_2:60093384-60093403 None:intergenic 30.0%
GAAATTGTTATAACACCAGA+GGG + chr6_2:60093384-60093403 Msa0922100:CDS 30.0%
AAATTGTTATAACACCAGAG+GGG + chr6_2:60093385-60093404 Msa0922100:CDS 30.0%
! ATCATCAAAATTAGCATTGG+TGG + chr6_2:60093432-60093451 Msa0922100:CDS 30.0%
!!! GTTTTAGAAGCTGTTACTTT+TGG + chr6_2:60093468-60093487 Msa0922100:CDS 30.0%
ATGAAAACTGTCTACAAAGT+CGG + chr6_2:60093693-60093712 Msa0922100:three_prime_UTR 30.0%
TGTGAACTTATTTGTAAGGA+AGG - chr6_2:60093763-60093782 None:intergenic 30.0%
AAGCTGTGAACTTATTTGTA+AGG - chr6_2:60093767-60093786 None:intergenic 30.0%
AAACAACTAGTGATAAACTC+TGG - chr6_2:60093808-60093827 None:intergenic 30.0%
TTAGTTACAGTAAGAGTCAG+GGG - chr6_2:60088367-60088386 None:intergenic 35.0%
GTTAGTTACAGTAAGAGTCA+GGG - chr6_2:60088368-60088387 None:intergenic 35.0%
TGTTAGTTACAGTAAGAGTC+AGG - chr6_2:60088369-60088388 None:intergenic 35.0%
TTAGAGAGAGAAAGGTAAAG+TGG - chr6_2:60088392-60088411 None:intergenic 35.0%
AATCTCTTTCTCTCTCTCTA+GGG + chr6_2:60088417-60088436 Msa0922100:five_prime_UTR 35.0%
!! AAGAGTACTTTGTGGGAAAT+GGG - chr6_2:60088470-60088489 None:intergenic 35.0%
GAAATGATTCGATACCTTAC+AGG - chr6_2:60088711-60088730 None:intergenic 35.0%
! GCATGTTGAAATTGATGGTT+TGG + chr6_2:60088850-60088869 Msa0922100:intron 35.0%
AATATCCAAGCAAACTACTG+AGG - chr6_2:60088952-60088971 None:intergenic 35.0%
ACAGTGAGAGTGATAGTTTA+GGG - chr6_2:60089002-60089021 None:intergenic 35.0%
TCATATCTCTCTCACCAATT+TGG + chr6_2:60089192-60089211 Msa0922100:intron 35.0%
TTGAAGGACTCTCATATTGA+TGG - chr6_2:60089266-60089285 None:intergenic 35.0%
ATGAGAGTCCTTCAATTAAC+TGG + chr6_2:60089271-60089290 Msa0922100:intron 35.0%
!!! TCACTCTCTCACCAATTTTT+TGG - chr6_2:60089373-60089392 None:intergenic 35.0%
!! TGCAATTCTAGGAACCTTTT+TGG + chr6_2:60089525-60089544 Msa0922100:intron 35.0%
!! TTATGAGGTATTGTCCTCTT+TGG + chr6_2:60089614-60089633 Msa0922100:intron 35.0%
!! TATGAGGTATTGTCCTCTTT+GGG + chr6_2:60089615-60089634 Msa0922100:intron 35.0%
TTATCAAGGACAAAACCATG+AGG - chr6_2:60089649-60089668 None:intergenic 35.0%
! TTGATAAAAGACGCCTTGTT+GGG + chr6_2:60089662-60089681 Msa0922100:intron 35.0%
AATAAACACCCACATTGTCT+GGG - chr6_2:60089733-60089752 None:intergenic 35.0%
AAATAAACACCCACATTGTC+TGG - chr6_2:60089734-60089753 None:intergenic 35.0%
CTAACTTAGCCACATATGTA+TGG + chr6_2:60089916-60089935 Msa0922100:intron 35.0%
! TGATGATGTATTGGATGAAG+AGG + chr6_2:60090017-60090036 Msa0922100:intron 35.0%
TCTCAAATCAACTTTCACAC+AGG - chr6_2:60090226-60090245 None:intergenic 35.0%
GTCAATCATCAAATGTTCAC+AGG - chr6_2:60090262-60090281 None:intergenic 35.0%
!!! GAACTGACTTAGTTTTGTAC+AGG + chr6_2:60090725-60090744 Msa0922100:CDS 35.0%
!!! GACTTAGTTTTGTACAGGTT+TGG + chr6_2:60090730-60090749 Msa0922100:intron 35.0%
CCAAGATTCTACATTCAAAC+GGG - chr6_2:60090918-60090937 None:intergenic 35.0%
GCCAAGATTCTACATTCAAA+CGG - chr6_2:60090919-60090938 None:intergenic 35.0%
! TGACATCTAACTTGCATTCT+AGG + chr6_2:60091048-60091067 Msa0922100:intron 35.0%
ATCTGAACCATAAATACCCA+GGG - chr6_2:60091247-60091266 None:intergenic 35.0%
TATCTGAACCATAAATACCC+AGG - chr6_2:60091248-60091267 None:intergenic 35.0%
CGAATTTACAATCCACTCTA+GGG - chr6_2:60091510-60091529 None:intergenic 35.0%
TCGAATTTACAATCCACTCT+AGG - chr6_2:60091511-60091530 None:intergenic 35.0%
!! GAGTGGATTGTAAATTCGAA+AGG + chr6_2:60091512-60091531 Msa0922100:intron 35.0%
! GATTGTGTTTGAAGTCTATC+AGG + chr6_2:60091579-60091598 Msa0922100:intron 35.0%
GGCAAATTAGTTCATTGATC+AGG + chr6_2:60091731-60091750 Msa0922100:intron 35.0%
! GGTCTTACTAAAGTACTAAG+AGG + chr6_2:60091863-60091882 Msa0922100:intron 35.0%
ACTGAGAAGTTCACATCAAT+TGG + chr6_2:60092045-60092064 Msa0922100:intron 35.0%
!! TGTTTTAAGTCAGTGTTTGG+TGG + chr6_2:60092226-60092245 Msa0922100:intron 35.0%
AATGCACAATAAGTAGTCAG+TGG + chr6_2:60092278-60092297 Msa0922100:intron 35.0%
!!! TGTTTTAAGTTAGCGTTTGG+TGG + chr6_2:60092390-60092409 Msa0922100:intron 35.0%
AATGCACAATAAGTAGTCAG+TGG + chr6_2:60092278-60092297 Msa0922100:intron 35.0%
! ATTTTGCAACCCAGCAAAAA+TGG - chr6_2:60092708-60092727 None:intergenic 35.0%
! ATTTTACAGGAGAATTGCTG+AGG + chr6_2:60092726-60092745 Msa0922100:intron 35.0%
! ATAGTTTTCTCTTCTGCATC+AGG - chr6_2:60093108-60093127 None:intergenic 35.0%
TTGTTTCGTCTTCCAAAGTT+TGG - chr6_2:60093134-60093153 None:intergenic 35.0%
CTGTAATGTCTCGATATCAA+AGG - chr6_2:60093289-60093308 None:intergenic 35.0%
GGAAATTGTTATAACACCAG+AGG + chr6_2:60093383-60093402 Msa0922100:CDS 35.0%
! GAAGAATTAATTTTCCCCTC+TGG - chr6_2:60093402-60093421 None:intergenic 35.0%
! GAACTCAGTTTAGGACAAAA+TGG - chr6_2:60093536-60093555 None:intergenic 35.0%
! GAAGTCCAAATACTTTTCAC+TGG + chr6_2:60093633-60093652 Msa0922100:three_prime_UTR 35.0%
! TCCAAATACTTTTCACTGGT+TGG + chr6_2:60093637-60093656 Msa0922100:three_prime_UTR 35.0%
!! ACCAACCAGTGAAAAGTATT+TGG - chr6_2:60093641-60093660 None:intergenic 35.0%
!! GGTGTTGTATATAGTGGATT+TGG + chr6_2:60093658-60093677 Msa0922100:three_prime_UTR 35.0%
! CTTTTACAATTGAGCAGTAG+TGG + chr6_2:60093858-60093877 Msa0922100:three_prime_UTR 35.0%
!! TAAAAGGAATGGGTTGTGTT+AGG + chr6_2:60093960-60093979 Msa0922100:three_prime_UTR 35.0%
CTAGAGAGAGAGAAAGAGAT+TGG - chr6_2:60088418-60088437 None:intergenic 40.0%
CAATCTCTTTCTCTCTCTCT+AGG + chr6_2:60088416-60088435 Msa0922100:five_prime_UTR 40.0%
!! GAAGAGTACTTTGTGGGAAA+TGG - chr6_2:60088471-60088490 None:intergenic 40.0%
ATTGGAACGGAAAAGCGAAA+CGG - chr6_2:60088678-60088697 None:intergenic 40.0%
AGGAGAACGGTAAATTGGAA+CGG - chr6_2:60088691-60088710 None:intergenic 40.0%
CTTACAGGAGAACGGTAAAT+TGG - chr6_2:60088696-60088715 None:intergenic 40.0%
CAATTTACCGTTCTCCTGTA+AGG + chr6_2:60088694-60088713 Msa0922100:CDS 40.0%
TTCGATACCTTACAGGAGAA+CGG - chr6_2:60088704-60088723 None:intergenic 40.0%
!! TTGATCCTCAGTAGTTTGCT+TGG + chr6_2:60088944-60088963 Msa0922100:intron 40.0%
CACAGTGAGAGTGATAGTTT+AGG - chr6_2:60089003-60089022 None:intergenic 40.0%
!! GCACTGACACTTTTGATTGA+AGG + chr6_2:60089025-60089044 Msa0922100:intron 40.0%
TGAAACATGAACACAGACAC+AGG - chr6_2:60089175-60089194 None:intergenic 40.0%
GTATGCTACACCATGTTATG+AGG + chr6_2:60089599-60089618 Msa0922100:intron 40.0%
GAGGACAATACCTCATAACA+TGG - chr6_2:60089612-60089631 None:intergenic 40.0%
!! CAACAAGGCGTCTTTTATCA+AGG - chr6_2:60089663-60089682 None:intergenic 40.0%
CTTGATAAAAGACGCCTTGT+TGG + chr6_2:60089661-60089680 Msa0922100:intron 40.0%
ATTGTCTTGACAAACAGCCA+TGG + chr6_2:60090318-60090337 Msa0922100:intron 40.0%
!!! TGCTTGCTGATTGTTTTTGG+TGG + chr6_2:60090409-60090428 Msa0922100:intron 40.0%
!!! TGCTGATTGTTTTTGGTGGT+TGG + chr6_2:60090413-60090432 Msa0922100:intron 40.0%
! GCAGTTTCTCTCTCAGATTT+TGG + chr6_2:60090600-60090619 Msa0922100:CDS 40.0%
CAATTCCAATCTGATCGTGA+TGG + chr6_2:60090670-60090689 Msa0922100:CDS 40.0%
CATAACCATCACGATCAGAT+TGG - chr6_2:60090678-60090697 None:intergenic 40.0%
AAAGAAAAGCCTTCTGCTTC+AGG + chr6_2:60090703-60090722 Msa0922100:CDS 40.0%
CCCGTTTGAATGTAGAATCT+TGG + chr6_2:60090915-60090934 Msa0922100:intron 40.0%
CTGATAGGAGAGACACTAAT+AGG - chr6_2:60090951-60090970 None:intergenic 40.0%
ATTAGTGTCTCTCCTATCAG+TGG + chr6_2:60090951-60090970 Msa0922100:intron 40.0%
ATAAATACCCAGGGGGTTAA+AGG - chr6_2:60091238-60091257 None:intergenic 40.0%
TTTAACCCCCTGGGTATTTA+TGG + chr6_2:60091237-60091256 Msa0922100:intron 40.0%
TCTGAACCATAAATACCCAG+GGG - chr6_2:60091246-60091265 None:intergenic 40.0%
GTAGCTAGTAACACAAGAGA+GGG - chr6_2:60091463-60091482 None:intergenic 40.0%
TGTAGCTAGTAACACAAGAG+AGG - chr6_2:60091464-60091483 None:intergenic 40.0%
AAAGCTATATGTCCCTAGAG+TGG + chr6_2:60091495-60091514 Msa0922100:intron 40.0%
GTTCATTGATCAGGCCAATT+AGG + chr6_2:60091740-60091759 Msa0922100:intron 40.0%
! GCTGGGTTGCAAAATTTTAC+AGG + chr6_2:60092713-60092732 Msa0922100:intron 40.0%
!! GGAGGGTACTAAAGAAACAT+TGG - chr6_2:60092824-60092843 None:intergenic 40.0%
CATGAATCAACTTGACCAGA+AGG - chr6_2:60092859-60092878 None:intergenic 40.0%
!! CTTCTGGTCAAGTTGATTCA+TGG + chr6_2:60092857-60092876 Msa0922100:CDS 40.0%
! TCAAGTTTTCCATCTTCGCT+TGG - chr6_2:60092883-60092902 None:intergenic 40.0%
AAGCGAAGATGGAAAACTTG+AGG + chr6_2:60092882-60092901 Msa0922100:CDS 40.0%
!! TAGTTTGCTGATCTGAGCTA+CGG - chr6_2:60092989-60093008 None:intergenic 40.0%
TAGCTCAGATCAGCAAACTA+AGG + chr6_2:60092989-60093008 Msa0922100:CDS 40.0%
AGCTCAGATCAGCAAACTAA+GGG + chr6_2:60092990-60093009 Msa0922100:CDS 40.0%
TATGCTGCGTCAGTAATGTA+TGG + chr6_2:60093024-60093043 Msa0922100:CDS 40.0%
AGATAACAGTGTCTAGGTTG+CGG + chr6_2:60093250-60093269 Msa0922100:CDS 40.0%
TGCAACGATTAGATCCAAAG+AGG + chr6_2:60093314-60093333 Msa0922100:CDS 40.0%
!! TGAAGCATTGTTTGGTAGAC+CGG + chr6_2:60093362-60093381 Msa0922100:CDS 40.0%
!! TTGAGAGCTATGTTGACTCA+AGG + chr6_2:60093508-60093527 Msa0922100:CDS 40.0%
GAGTTAGCAGAACTCAGTTT+AGG - chr6_2:60093545-60093564 None:intergenic 40.0%
AATTTCTTCCCTTGGATGCA+TGG - chr6_2:60093567-60093586 None:intergenic 40.0%
TCCAAGGGAAGAAATTCACA+TGG + chr6_2:60093571-60093590 Msa0922100:three_prime_UTR 40.0%
!! CTGGTTGGTGTTGTATATAG+TGG + chr6_2:60093652-60093671 Msa0922100:three_prime_UTR 40.0%
TTACAATTGAGCAGTAGTGG+AGG + chr6_2:60093861-60093880 Msa0922100:three_prime_UTR 40.0%
ACGCACGGCGTTAAACTTAA+CGG + chr6_2:60088592-60088611 Msa0922100:CDS 45.0%
TATCTGACAACGACACGAGA+CGG + chr6_2:60089067-60089086 Msa0922100:intron 45.0%
TGGTGAGAGAGTGATGCTTT+AGG + chr6_2:60089379-60089398 Msa0922100:intron 45.0%
GGTGAGAGAGTGATGCTTTA+GGG + chr6_2:60089380-60089399 Msa0922100:intron 45.0%
CCTCAATTCCCAGACAATGT+GGG + chr6_2:60089722-60089741 Msa0922100:intron 45.0%
! TGGAAGCACAATGAACACCA+TGG - chr6_2:60090338-60090357 None:intergenic 45.0%
TCTGTACCTAACTCCAAGCA+AGG + chr6_2:60090448-60090467 Msa0922100:CDS 45.0%
CTGTACCTAACTCCAAGCAA+GGG + chr6_2:60090449-60090468 Msa0922100:CDS 45.0%
TCATCATCTGCAGAGTCATC+TGG + chr6_2:60090532-60090551 Msa0922100:CDS 45.0%
TAAAGCTCGAGTCTCCAGTA+GGG + chr6_2:60090578-60090597 Msa0922100:CDS 45.0%
AAGTCAGTTCCTGAAGCAGA+AGG - chr6_2:60090715-60090734 None:intergenic 45.0%
AAGTGCACATAGCCACTGAT+AGG - chr6_2:60090966-60090985 None:intergenic 45.0%
! TGTATTGACCTTTAACCCCC+TGG + chr6_2:60091227-60091246 Msa0922100:intron 45.0%
! GTATTGACCTTTAACCCCCT+GGG + chr6_2:60091228-60091247 Msa0922100:intron 45.0%
CTGAACCATAAATACCCAGG+GGG - chr6_2:60091245-60091264 None:intergenic 45.0%
!!! AGGTGCTGACCATTTTTGCT+GGG + chr6_2:60092696-60092715 Msa0922100:intron 45.0%
CAGGAGAATTGCTGAGGTAA+AGG + chr6_2:60092732-60092751 Msa0922100:intron 45.0%
TCAACTTGACCAGAAGGATG+TGG - chr6_2:60092853-60092872 None:intergenic 45.0%
GTGGCTTTCGATCAACTCAT+AGG - chr6_2:60092926-60092945 None:intergenic 45.0%
!! TGAGTTGATCGAAAGCCACT+TGG + chr6_2:60092927-60092946 Msa0922100:CDS 45.0%
TGATCGGTTACCCAGAAGTA+GGG - chr6_2:60092953-60092972 None:intergenic 45.0%
TACTTCTGGGTAACCGATCA+GGG + chr6_2:60092953-60092972 Msa0922100:CDS 45.0%
! CGGATTTTGAATCCCCTGAT+CGG - chr6_2:60092969-60092988 None:intergenic 45.0%
CAGATCAGCAAACTAAGGGT+AGG + chr6_2:60092994-60093013 Msa0922100:CDS 45.0%
TTCTCAAGCGTGTTGTCCAA+CGG + chr6_2:60093052-60093071 Msa0922100:CDS 45.0%
GAAGACGAAACAAGAATCGC+TGG + chr6_2:60093141-60093160 Msa0922100:CDS 45.0%
GGTGGGACATAACTTGAGAA+GGG - chr6_2:60093176-60093195 None:intergenic 45.0%
GTCAGGAGATAACAGTGTCT+AGG + chr6_2:60093244-60093263 Msa0922100:CDS 45.0%
TGCTAACTCCATGCATCCAA+GGG + chr6_2:60093556-60093575 Msa0922100:three_prime_UTR 45.0%
GCCATGTGAATTTCTTCCCT+TGG - chr6_2:60093575-60093594 None:intergenic 45.0%
! CATTCCTTTTACCCAGGCTT+GGG - chr6_2:60093951-60093970 None:intergenic 45.0%
CAAGCCTGGGTAAAAGGAAT+GGG + chr6_2:60093950-60093969 Msa0922100:three_prime_UTR 45.0%
! ACAACCCATTCCTTTTACCC+AGG - chr6_2:60093957-60093976 None:intergenic 45.0%
CAAGTCCTATCCCTCTAAGT+GGG - chr6_2:60094027-60094046 None:intergenic 45.0%
TCAAGTCCTATCCCTCTAAG+TGG - chr6_2:60094028-60094047 None:intergenic 45.0%
GAAAATGGAAGCCACACGCA+CGG + chr6_2:60088577-60088596 Msa0922100:exon 50.0%
TAAGTTTAACGCCGTGCGTG+TGG - chr6_2:60088591-60088610 None:intergenic 50.0%
CTGTTCTTCCGTCATCTGCA+CGG + chr6_2:60088618-60088637 Msa0922100:CDS 50.0%
GCGAACATTGACGGCTTACA+CGG - chr6_2:60088644-60088663 None:intergenic 50.0%
TGTAAGCCGTCAATGTTCGC+CGG + chr6_2:60088644-60088663 Msa0922100:CDS 50.0%
! TGAGGTGCTTACACCCAAAG+AGG - chr6_2:60089631-60089650 None:intergenic 50.0%
CTTTGGGTGTAAGCACCTCA+TGG + chr6_2:60089631-60089650 Msa0922100:intron 50.0%
! AAAGACGCCTTGTTGGGTTG+AGG + chr6_2:60089668-60089687 Msa0922100:intron 50.0%
!! CTTGTTGGGTTGAGGAGCAT+GGG + chr6_2:60089676-60089695 Msa0922100:intron 50.0%
GCCTCAATTCCCAGACAATG+TGG + chr6_2:60089721-60089740 Msa0922100:intron 50.0%
CCCACATTGTCTGGGAATTG+AGG - chr6_2:60089725-60089744 None:intergenic 50.0%
CCATTCCCTTGCTTGGAGTT+AGG - chr6_2:60090457-60090476 None:intergenic 50.0%
CCTAACTCCAAGCAAGGGAA+TGG + chr6_2:60090454-60090473 Msa0922100:CDS 50.0%
ACTCCAAGCAAGGGAATGGA+AGG + chr6_2:60090458-60090477 Msa0922100:CDS 50.0%
TCTCCTTCCATTCCCTTGCT+TGG - chr6_2:60090464-60090483 None:intergenic 50.0%
TGGAAGTAGAAGGGGTCTTG+TGG + chr6_2:60090492-60090511 Msa0922100:CDS 50.0%
! TGGAGACTCGAGCTTTAGTG+GGG - chr6_2:60090575-60090594 None:intergenic 50.0%
! CTGGAGACTCGAGCTTTAGT+GGG - chr6_2:60090576-60090595 None:intergenic 50.0%
! ACTGGAGACTCGAGCTTTAG+TGG - chr6_2:60090577-60090596 None:intergenic 50.0%
CTAAAGCTCGAGTCTCCAGT+AGG + chr6_2:60090577-60090596 Msa0922100:CDS 50.0%
TGAGAGAGAAACTGCCCTAC+TGG - chr6_2:60090595-60090614 None:intergenic 50.0%
CTGCAGCAGACATGAGATGT+GGG - chr6_2:60090633-60090652 None:intergenic 50.0%
ACTGCAGCAGACATGAGATG+TGG - chr6_2:60090634-60090653 None:intergenic 50.0%
!!! GAGGTGCTGACCATTTTTGC+TGG + chr6_2:60092695-60092714 Msa0922100:intron 50.0%
CTGAGGTAAAGGCGAAAGAG+AGG + chr6_2:60092743-60092762 Msa0922100:CDS 50.0%
GAAGGATGTGGCGTTATGGA+GGG - chr6_2:60092841-60092860 None:intergenic 50.0%
AGAAGGATGTGGCGTTATGG+AGG - chr6_2:60092842-60092861 None:intergenic 50.0%
TCCATAACGCCACATCCTTC+TGG + chr6_2:60092841-60092860 Msa0922100:CDS 50.0%
ACCAGAAGGATGTGGCGTTA+TGG - chr6_2:60092845-60092864 None:intergenic 50.0%
GATTCATGGCCAAGCGAAGA+TGG + chr6_2:60092871-60092890 Msa0922100:CDS 50.0%
CTGATCGGTTACCCAGAAGT+AGG - chr6_2:60092954-60092973 None:intergenic 50.0%
CTACTTCTGGGTAACCGATC+AGG + chr6_2:60092952-60092971 Msa0922100:CDS 50.0%
ACTTCTGGGTAACCGATCAG+GGG + chr6_2:60092954-60092973 Msa0922100:CDS 50.0%
CAGCAAACTAAGGGTAGGAC+AGG + chr6_2:60092999-60093018 Msa0922100:CDS 50.0%
! TCTTTTCCAGCTGGAACCGT+TGG - chr6_2:60093071-60093090 None:intergenic 50.0%
GGGTGGGACATAACTTGAGA+AGG - chr6_2:60093177-60093196 None:intergenic 50.0%
CTTGAGAGTGGCATCAGTTC+TGG + chr6_2:60093213-60093232 Msa0922100:CDS 50.0%
! GGCATCAGTTCTGGTGCAAA+TGG + chr6_2:60093222-60093241 Msa0922100:CDS 50.0%
! CAGTTCTGGTGCAAATGGTC+AGG + chr6_2:60093227-60093246 Msa0922100:CDS 50.0%
CTGCTAACTCCATGCATCCA+AGG + chr6_2:60093555-60093574 Msa0922100:three_prime_UTR 50.0%
!! GGGACTGGCTATGTATAGCA+AGG - chr6_2:60093931-60093950 None:intergenic 50.0%
! CCATTCCTTTTACCCAGGCT+TGG - chr6_2:60093952-60093971 None:intergenic 50.0%
CCAAGCCTGGGTAAAAGGAA+TGG + chr6_2:60093949-60093968 Msa0922100:three_prime_UTR 50.0%
TCTCTATCCGACCCACTTAG+AGG + chr6_2:60094013-60094032 Msa0922100:three_prime_UTR 50.0%
CTCTATCCGACCCACTTAGA+GGG + chr6_2:60094014-60094033 Msa0922100:three_prime_UTR 50.0%
TCCTATCCCTCTAAGTGGGT+CGG - chr6_2:60094023-60094042 None:intergenic 50.0%
TTACACGGCCGTGCAGATGA+CGG - chr6_2:60088629-60088648 None:intergenic 55.0%
GAACGTCCGGCGAACATTGA+CGG - chr6_2:60088653-60088672 None:intergenic 55.0%
AAGCGAAACGGTGGAACGTC+CGG - chr6_2:60088666-60088685 None:intergenic 55.0%
GGAACGGAAAAGCGAAACGG+TGG - chr6_2:60088675-60088694 None:intergenic 55.0%
CCATGCTCCTCAACCCAACA+AGG - chr6_2:60089678-60089697 None:intergenic 55.0%
!! CCTTGTTGGGTTGAGGAGCA+TGG + chr6_2:60089675-60089694 Msa0922100:intron 55.0%
AAGCCACTTGGCCCTACTTC+TGG + chr6_2:60092939-60092958 Msa0922100:CDS 55.0%
AGCCACTTGGCCCTACTTCT+GGG + chr6_2:60092940-60092959 Msa0922100:CDS 55.0%
TACCCAGAAGTAGGGCCAAG+TGG - chr6_2:60092945-60092964 None:intergenic 55.0%
TGTTGTCCAACGGTTCCAGC+TGG + chr6_2:60093062-60093081 Msa0922100:CDS 55.0%
TCAAGCCAAGCAGGGACTTC+GGG - chr6_2:60093198-60093217 None:intergenic 55.0%
CTCAAGCCAAGCAGGGACTT+CGG - chr6_2:60093199-60093218 None:intergenic 55.0%
TGCCACTCTCAAGCCAAGCA+GGG - chr6_2:60093206-60093225 None:intergenic 55.0%
ATGCCACTCTCAAGCCAAGC+AGG - chr6_2:60093207-60093226 None:intergenic 55.0%
TACATAGCCAGTCCCAAGCC+TGG + chr6_2:60093936-60093955 Msa0922100:three_prime_UTR 55.0%
ACATAGCCAGTCCCAAGCCT+GGG + chr6_2:60093937-60093956 Msa0922100:three_prime_UTR 55.0%
! CTTTTACCCAGGCTTGGGAC+TGG - chr6_2:60093946-60093965 None:intergenic 55.0%
CAGTCCCAAGCCTGGGTAAA+AGG + chr6_2:60093944-60093963 Msa0922100:three_prime_UTR 55.0%
TCCGACCCACTTAGAGGGAT+AGG + chr6_2:60094019-60094038 Msa0922100:three_prime_UTR 55.0%
CAAGCCAAGCAGGGACTTCG+GGG - chr6_2:60093197-60093216 None:intergenic 60.0%
! GTCCCTGCTTGGCTTGAGAG+TGG + chr6_2:60093201-60093220 Msa0922100:CDS 60.0%
CCAAGCAGGGACTTCGGGGT+GGG - chr6_2:60093193-60093212 None:intergenic 65.0%
CCCACCCCGAAGTCCCTGCT+TGG + chr6_2:60093190-60093209 Msa0922100:CDS 70.0%
GCCAAGCAGGGACTTCGGGG+TGG - chr6_2:60093194-60093213 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 60088347 60094089 60088347 ID=Msa0922100;Name=Msa0922100
chr6_2 mRNA 60088347 60094089 60088347 ID=Msa0922100-mRNA-1;Parent=Msa0922100;Name=Msa0922100-mRNA-1;_AED=0.03;_eAED=0.03;_QI=141|1|1|1|0.66|0.5|4|538|419
chr6_2 exon 60088347 60088481 60088347 ID=Msa0922100-mRNA-1:exon:9210;Parent=Msa0922100-mRNA-1
chr6_2 exon 60088575 60088715 60088575 ID=Msa0922100-mRNA-1:exon:9211;Parent=Msa0922100-mRNA-1
chr6_2 exon 60090439 60090746 60090439 ID=Msa0922100-mRNA-1:exon:9212;Parent=Msa0922100-mRNA-1
chr6_2 exon 60092735 60094089 60092735 ID=Msa0922100-mRNA-1:exon:9213;Parent=Msa0922100-mRNA-1
chr6_2 five_prime_UTR 60088347 60088481 60088347 ID=Msa0922100-mRNA-1:five_prime_utr;Parent=Msa0922100-mRNA-1
chr6_2 five_prime_UTR 60088575 60088580 60088575 ID=Msa0922100-mRNA-1:five_prime_utr;Parent=Msa0922100-mRNA-1
chr6_2 CDS 60088581 60088715 60088581 ID=Msa0922100-mRNA-1:cds;Parent=Msa0922100-mRNA-1
chr6_2 CDS 60090439 60090746 60090439 ID=Msa0922100-mRNA-1:cds;Parent=Msa0922100-mRNA-1
chr6_2 CDS 60092735 60093551 60092735 ID=Msa0922100-mRNA-1:cds;Parent=Msa0922100-mRNA-1
chr6_2 three_prime_UTR 60093552 60094089 60093552 ID=Msa0922100-mRNA-1:three_prime_utr;Parent=Msa0922100-mRNA-1
Gene Sequence

>Msa0922100

ATGGAAGCCACACGCACGGCGTTAAACTTAACGGCAACTGTTCTTCCGTCATCTGCACGGCCGTGTAAGCCGTCAATGTTCGCCGGACGTTCCACCGTTTCGCTTTTCCGTTCCAATTTACCGTTCTCCTGTAAGCTGCGCACTTCTGTACCTAACTCCAAGCAAGGGAATGGAAGGAGATTTTCTATTGGAAGTAGAAGGGGTCTTGTGGTTCGAGCTGCATCATCATCATCATCTGCAGAGTCATCTGGATCAAGTTCTAATATTGCCCCACTAAAGCTCGAGTCTCCAGTAGGGCAGTTTCTCTCTCAGATTTTGGTTAGTCACCCACATCTCATGTCTGCTGCAGTAGAGCGACAGCTAGAGCAATTCCAATCTGATCGTGATGGTTATGAACAAAAAGAAAAGCCTTCTGCTTCAGGAACTGACTTAGTTTTGTACAGGAGAATTGCTGAGGTAAAGGCGAAAGAGAGGAGAAAAGCTATAGAAGAAATATTGTACACATTGGTAGTGCAGAAATTTATGGATGCCAATGTTTCTTTAGTACCCTCCATAACGCCACATCCTTCTGGTCAAGTTGATTCATGGCCAAGCGAAGATGGAAAACTTGAGGATCTTCACTCGCGTGAAGCCTATGAGTTGATCGAAAGCCACTTGGCCCTACTTCTGGGTAACCGATCAGGGGATTCAAAATCCGTAGCTCAGATCAGCAAACTAAGGGTAGGACAGGTCTATGCTGCGTCAGTAATGTATGGATACTTTCTCAAGCGTGTTGTCCAACGGTTCCAGCTGGAAAAGACAATAAAAAATCTACCTGATGCAGAAGAGAAAACTATTAGCCAAACTTTGGAAGACGAAACAAGAATCGCTGGTCTTGAGTTCCCTTCTCAAGTTATGTCCCACCCCGAAGTCCCTGCTTGGCTTGAGAGTGGCATCAGTTCTGGTGCAAATGGTCAGGAGATAACAGTGTCTAGGTTGCGGTCCTATATGATGTCCTTTGATATCGAGACATTACAGAGATATGCAACGATTAGATCCAAAGAGGCCGTCAGCATCATTGAGAATCATACTGAAGCATTGTTTGGTAGACCGGAAATTGTTATAACACCAGAGGGGAAAATTAATTCTTCAAAAGATGAAATCATCAAAATTAGCATTGGTGGTTTGAAAAGACTTGTTTTAGAAGCTGTTACTTTTGGTTCTTTTCTTTGGGATGTTGAGAGCTATGTTGACTCAAGGTACCATTTTGTCCTAAACTGA
Protein sequence

>Msa0922100

MEATRTALNLTATVLPSSARPCKPSMFAGRSTVSLFRSNLPFSCKLRTSVPNSKQGNGRRFSIGSRRGLVVRAASSSSSAESSGSSSNIAPLKLESPVGQFLSQILVSHPHLMSAAVERQLEQFQSDRDGYEQKEKPSASGTDLVLYRRIAEVKAKERRKAIEEILYTLVVQKFMDANVSLVPSITPHPSGQVDSWPSEDGKLEDLHSREAYELIESHLALLLGNRSGDSKSVAQISKLRVGQVYAASVMYGYFLKRVVQRFQLEKTIKNLPDAEEKTISQTLEDETRIAGLEFPSQVMSHPEVPAWLESGISSGANGQEITVSRLRSYMMSFDIETLQRYATIRSKEAVSIIENHTEALFGRPEIVITPEGKINSSKDEIIKISIGGLKRLVLEAVTFGSFLWDVESYVDSRYHFVLN*