Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1163190 | XP_013449734.1 | 84.543 | 427 | 10 | 3 | 1 | 425 | 1 | 373 | 0.0 | 675 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1163190 | sp|Q8H1F6|DGP3_ARATH | 54.739 | 422 | 119 | 7 | 21 | 424 | 4 | 371 | 1.37e-147 | 427 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1163190 | A0A072U235 | 84.543 | 427 | 10 | 3 | 1 | 425 | 1 | 373 | 0.0 | 675 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027250 | Msa1163190 | 0.846130 | 2.634284e-59 | -8.615850e-47 |
| Msa0075160 | Msa1163190 | 0.832459 | 9.342873e-56 | -8.615850e-47 |
| Msa0645800 | Msa1163190 | 0.892767 | 1.171307e-74 | -8.615850e-47 |
| Msa0654410 | Msa1163190 | 0.812119 | 4.976150e-51 | -8.615850e-47 |
| Msa0685110 | Msa1163190 | 0.886621 | 2.916387e-72 | -8.615850e-47 |
| Msa0685500 | Msa1163190 | 0.897625 | 1.173214e-76 | -8.615850e-47 |
| Msa0719900 | Msa1163190 | 0.827362 | 1.631070e-54 | -8.615850e-47 |
| Msa0804690 | Msa1163190 | 0.843924 | 1.038511e-58 | -8.615850e-47 |
| Msa0167500 | Msa1163190 | 0.848463 | 6.030832e-60 | -8.615850e-47 |
| Msa0168410 | Msa1163190 | 0.830284 | 3.201877e-55 | -8.615850e-47 |
| Msa0994250 | Msa1163190 | 0.812570 | 3.966741e-51 | -8.615850e-47 |
| Msa1082640 | Msa1163190 | 0.813268 | 2.789606e-51 | -8.615850e-47 |
| Msa1163190 | Msa1173800 | -0.820141 | 8.023592e-53 | -8.615850e-47 |
| Msa1163190 | Msa1278120 | 0.807739 | 4.363297e-50 | -8.615850e-47 |
| Msa0542060 | Msa1163190 | 0.888159 | 7.556224e-73 | -8.615850e-47 |
| Msa0858250 | Msa1163190 | 0.806369 | 8.506308e-50 | -8.615850e-47 |
| Msa0922100 | Msa1163190 | 0.814516 | 1.480618e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1163190 | MtrunA17_Chr7g0259841 | 84.543 | 427 | 10 | 3 | 1 | 425 | 1 | 373 | 0.0 | 675 |
| Msa1163190 | MtrunA17_Chr7g0257311 | 32.143 | 168 | 96 | 4 | 95 | 251 | 24 | 184 | 2.12e-17 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1163190 | AT4G02790.1 | 54.739 | 422 | 119 | 7 | 21 | 424 | 4 | 371 | 1.39e-148 | 427 |
| Msa1163190 | AT2G41670.1 | 34.706 | 170 | 89 | 4 | 95 | 251 | 26 | 186 | 5.27e-21 | 94.7 |
| Msa1163190 | AT3G07050.1 | 25.073 | 343 | 171 | 9 | 107 | 425 | 128 | 408 | 1.90e-11 | 66.2 |
Find 115 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGGTGGAGATAGAGAATT+TGG | 0.206923 | 7_4:-54270318 | None:intergenic |
| CATCATCATCATCTTGCTTA+TGG | 0.251466 | 7_4:+54270292 | Msa1163190:CDS |
| ATGAAAGGTGGGTTCGATTT+GGG | 0.264909 | 7_4:+54273842 | Msa1163190:intron |
| TGGTAATAAGAAGAGAATTT+TGG | 0.284454 | 7_4:+54271919 | Msa1163190:CDS |
| GGTATTGGACAGTGGTTTCC+TGG | 0.286100 | 7_4:+54271034 | Msa1163190:intron |
| TATGAAAGGTGGGTTCGATT+TGG | 0.308400 | 7_4:+54273841 | Msa1163190:intron |
| AATTGTGGAGAAATTGAAAT+TGG | 0.308735 | 7_4:-54270336 | None:intergenic |
| TGGGAAAGATCTTGAGTTGC+TGG | 0.331013 | 7_4:+54273861 | Msa1163190:CDS |
| ATCTCAATCTCCCACCATTC+AGG | 0.333290 | 7_4:+54270419 | Msa1163190:CDS |
| ACTCCTGGCCTTGGAGCCGC+TGG | 0.335687 | 7_4:-54273015 | None:intergenic |
| CTTGAGTTGCTGGATTCTCC+TGG | 0.342603 | 7_4:+54273871 | Msa1163190:CDS |
| ATCGGCAACAACACATTTGA+TGG | 0.353983 | 7_4:+54270852 | Msa1163190:CDS |
| CTTGCGCTTCATTTGTTCAA+TGG | 0.362304 | 7_4:+54274403 | Msa1163190:CDS |
| CACTCAATGTTGTAGATAAT+CGG | 0.365800 | 7_4:+54270834 | Msa1163190:intron |
| CTGCTAATTCCTTTGCTAAC+CGG | 0.374309 | 7_4:-54272157 | None:intergenic |
| AAATTACGCGAGAGATATTC+AGG | 0.380377 | 7_4:+54274558 | Msa1163190:three_prime_UTR |
| GTTGATGGATGTTGTTATAG+AGG | 0.386526 | 7_4:+54271099 | Msa1163190:CDS |
| GAGCCTCAAATGTTCATAGA+AGG | 0.399118 | 7_4:-54274643 | None:intergenic |
| GTCACAGTATATCAGTATAC+AGG | 0.400702 | 7_4:-54274601 | None:intergenic |
| GTCTTCTCCAATGGGCAGCT+TGG | 0.417848 | 7_4:+54272022 | Msa1163190:CDS |
| CAAGGAACAACTTAAGTTGA+TGG | 0.420000 | 7_4:+54271084 | Msa1163190:CDS |
| CTCCAATGGGCAGCTTGGAA+TGG | 0.425085 | 7_4:+54272027 | Msa1163190:CDS |
| AGCGTCAGAGTCTTGCTTCT+AGG | 0.428489 | 7_4:-54274527 | None:intergenic |
| AAACCTTCTATGAACATTTG+AGG | 0.430315 | 7_4:+54274640 | Msa1163190:three_prime_UTR |
| AGAGACAGGTTGCGTCCATT+AGG | 0.431494 | 7_4:-54273283 | None:intergenic |
| TGCCCAGCGGCTCCAAGGCC+AGG | 0.436405 | 7_4:+54273012 | Msa1163190:CDS |
| GGAGATTGAGATTGGAGGGT+TGG | 0.441330 | 7_4:-54270408 | None:intergenic |
| CTCAAGTCTCTTGTAACTCC+TGG | 0.448079 | 7_4:-54273030 | None:intergenic |
| CTCTCCAATGTCATCACATA+TGG | 0.452328 | 7_4:-54273941 | None:intergenic |
| CAGCTGATGTAAATGTTAAA+CGG | 0.455115 | 7_4:+54272177 | Msa1163190:CDS |
| TAGGTTCGAGCTGGAATAGT+TGG | 0.459536 | 7_4:+54272934 | Msa1163190:intron |
| AACTGCAGATCGAAATGCTT+GGG | 0.470581 | 7_4:+54271967 | Msa1163190:CDS |
| TATGCTGAATATCAAGAGAC+AGG | 0.471794 | 7_4:-54273297 | None:intergenic |
| ACATTCTTCTCTTTAACAAA+CGG | 0.471895 | 7_4:-54272990 | None:intergenic |
| CTTCGTTGGAGAGGCCTCCT+AGG | 0.475968 | 7_4:+54274488 | Msa1163190:CDS |
| TTATTCCCACCCGCAGTAGC+AGG | 0.476643 | 7_4:+54270358 | Msa1163190:CDS |
| TTAGAAAAGGTAGGTTTGGT+TGG | 0.479606 | 7_4:+54274464 | Msa1163190:CDS |
| TCTCTTGTAACTCCTGGCCT+TGG | 0.481914 | 7_4:-54273024 | None:intergenic |
| TGATAATGCATACCTACTGC+TGG | 0.487418 | 7_4:-54274021 | None:intergenic |
| TCATATTGCAAAAGCAGAAA+AGG | 0.487875 | 7_4:+54271057 | Msa1163190:CDS |
| GATGGTTCCGAAGGAGGGAC+CGG | 0.488013 | 7_4:+54270870 | Msa1163190:CDS |
| GAACGGACTTGAAGTCCTAA+TGG | 0.489917 | 7_4:+54273268 | Msa1163190:intron |
| CAAAGGACTACTTCCTCGTC+CGG | 0.491033 | 7_4:+54272205 | Msa1163190:CDS |
| ACAAAGGTTGTCTTCTCCAA+TGG | 0.491090 | 7_4:+54272013 | Msa1163190:CDS |
| ATAAATTCTATAACTTCTTG+AGG | 0.500346 | 7_4:-54274855 | None:intergenic |
| AGGTTCTCCACTTCACCTCT+CGG | 0.500597 | 7_4:+54270378 | Msa1163190:CDS |
| CGGACGAGGAAGTAGTCCTT+TGG | 0.500629 | 7_4:-54272204 | None:intergenic |
| GAATGGTGGGAGATTGAGAT+TGG | 0.500709 | 7_4:-54270416 | None:intergenic |
| ACAACAAAATAAACCAGCAT+TGG | 0.501357 | 7_4:-54273385 | None:intergenic |
| TAGGTTTGGTTGGACTTCGT+TGG | 0.503830 | 7_4:+54274474 | Msa1163190:CDS |
| AAACTTGTATCGTTTACAAA+GGG | 0.508478 | 7_4:-54274147 | None:intergenic |
| TTCTATAACTTCTTGAGGAA+AGG | 0.509722 | 7_4:-54274850 | None:intergenic |
| AACCATTCCAAGCTGCCCAT+TGG | 0.512603 | 7_4:-54272029 | None:intergenic |
| TTGACACTGATCTTTATCAC+TGG | 0.513007 | 7_4:+54270913 | Msa1163190:CDS |
| CAAAGGTTGTCTTCTCCAAT+GGG | 0.513498 | 7_4:+54272014 | Msa1163190:CDS |
| TTGTAGATGGATCTATGGCT+TGG | 0.521384 | 7_4:+54271899 | Msa1163190:intron |
| GACTGGTCACTGATTCGCAT+TGG | 0.525801 | 7_4:-54273901 | None:intergenic |
| TTGAGTTGCTGGATTCTCCT+GGG | 0.526414 | 7_4:+54273872 | Msa1163190:CDS |
| GGAGAACCTGCTACTGCGGG+TGG | 0.532796 | 7_4:-54270364 | None:intergenic |
| TGTGGAGAAATTGAAATTGG+TGG | 0.533927 | 7_4:-54270333 | None:intergenic |
| ACCAGTCCAAAGATCGGTCC+CGG | 0.535915 | 7_4:-54270889 | None:intergenic |
| TGATATACTGTGACTGTGAA+TGG | 0.540299 | 7_4:+54274610 | Msa1163190:three_prime_UTR |
| CATTTGATGGTTCCGAAGGA+GGG | 0.543043 | 7_4:+54270865 | Msa1163190:CDS |
| CAACAGAGGAAAGCCAATGC+TGG | 0.543627 | 7_4:+54273372 | Msa1163190:CDS |
| GTATACAAGTGTTGTACCAT+AGG | 0.544026 | 7_4:+54274749 | Msa1163190:three_prime_UTR |
| ATGATGCATACAAAATCCTA+TGG | 0.544121 | 7_4:-54274765 | None:intergenic |
| TTGTTATAGAGGTACGAGAC+GGG | 0.546757 | 7_4:+54271110 | Msa1163190:CDS |
| TGGTGGGAGATTGAGATTGG+AGG | 0.546785 | 7_4:-54270413 | None:intergenic |
| ACTATTGAATAGGTTCGAGC+TGG | 0.552658 | 7_4:+54272925 | Msa1163190:intron |
| CTGCGGGTGGGAATAAATTG+TGG | 0.555305 | 7_4:-54270351 | None:intergenic |
| AAGTGGAGAACCTGCTACTG+CGG | 0.555716 | 7_4:-54270368 | None:intergenic |
| ATGGTTCCGAAGGAGGGACC+GGG | 0.555917 | 7_4:+54270871 | Msa1163190:CDS |
| TTCTAAAATCTGACAGGACA+CGG | 0.558450 | 7_4:-54274447 | None:intergenic |
| ACTTACCTGTGGATGACTTG+TGG | 0.559160 | 7_4:-54271146 | None:intergenic |
| ATTCGCATTGGAAGTATCCC+AGG | 0.560318 | 7_4:-54273889 | None:intergenic |
| GGTGGGAGATTGAGATTGGA+GGG | 0.562781 | 7_4:-54270412 | None:intergenic |
| CAACTGCAGATCGAAATGCT+TGG | 0.565332 | 7_4:+54271966 | Msa1163190:CDS |
| CTCCTGGCCTTGGAGCCGCT+GGG | 0.567018 | 7_4:-54273014 | None:intergenic |
| ACATTTGATGGTTCCGAAGG+AGG | 0.568118 | 7_4:+54270864 | Msa1163190:CDS |
| TTGGTTGGACTTCGTTGGAG+AGG | 0.572853 | 7_4:+54274479 | Msa1163190:CDS |
| TAGAAGCAACCTACCGGACG+AGG | 0.573378 | 7_4:-54272218 | None:intergenic |
| GTCAAGACCAGTCCAAAGAT+CGG | 0.574666 | 7_4:-54270895 | None:intergenic |
| GAAACTTGTATCGTTTACAA+AGG | 0.575273 | 7_4:-54274148 | None:intergenic |
| ACCGGGACCGATCTTTGGAC+TGG | 0.583962 | 7_4:+54270888 | Msa1163190:CDS |
| AGTGGAGAACCTGCTACTGC+GGG | 0.585138 | 7_4:-54270367 | None:intergenic |
| CTTACAAAGCTTCCAGCAGT+AGG | 0.586408 | 7_4:+54274009 | Msa1163190:CDS |
| AACACATTTGATGGTTCCGA+AGG | 0.589714 | 7_4:+54270861 | Msa1163190:CDS |
| CACATACTATATACCTGCAC+CGG | 0.592283 | 7_4:-54270951 | None:intergenic |
| AAAAGCAGAAAAGGAACTCA+AGG | 0.594084 | 7_4:+54271066 | Msa1163190:CDS |
| AGGGCACATTGAAGCTAGGC+CGG | 0.597091 | 7_4:+54272138 | Msa1163190:intron |
| AATGTTAAACGGAGAGCCAA+AGG | 0.598690 | 7_4:+54272188 | Msa1163190:CDS |
| AATAGTTGGATACCCTAATG+TGG | 0.603349 | 7_4:+54272948 | Msa1163190:CDS |
| GTACAGGGCACATTGAAGCT+AGG | 0.604959 | 7_4:+54272134 | Msa1163190:intron |
| GTTGTCCACAAGTCATCCAC+AGG | 0.607084 | 7_4:+54271141 | Msa1163190:CDS |
| GAAGCTAGGCCGGTTAGCAA+AGG | 0.608408 | 7_4:+54272148 | Msa1163190:CDS |
| TGATCTTTATCACTGGACAA+AGG | 0.621272 | 7_4:+54270920 | Msa1163190:CDS |
| ATAGTTGGATACCCTAATGT+GGG | 0.621609 | 7_4:+54272949 | Msa1163190:CDS |
| TTGAGATTGGAGGGTTGGTG+TGG | 0.622668 | 7_4:-54270403 | None:intergenic |
| CTTGCCATATGTGATGACAT+TGG | 0.632886 | 7_4:+54273937 | Msa1163190:CDS |
| TTTCGTGTAGACAGTGAATG+TGG | 0.640512 | 7_4:+54274167 | Msa1163190:CDS |
| TCACAGTATATCAGTATACA+GGG | 0.643439 | 7_4:-54274600 | None:intergenic |
| AACATCTGACTTCACCTAGG+AGG | 0.645330 | 7_4:-54274502 | None:intergenic |
| TGTGGCACCGAGAGGTGAAG+TGG | 0.645729 | 7_4:-54270385 | None:intergenic |
| AGGGTTGGTGTGGCACCGAG+AGG | 0.654208 | 7_4:-54270393 | None:intergenic |
| GAGAACCTGCTACTGCGGGT+GGG | 0.654778 | 7_4:-54270363 | None:intergenic |
| CAGGAGTTACAAGAGACTTG+AGG | 0.662103 | 7_4:+54273031 | Msa1163190:CDS |
| AGCACTAGCAGCAATAAACA+TGG | 0.690155 | 7_4:+54270245 | Msa1163190:exon |
| GTAAACATCTGACTTCACCT+AGG | 0.697123 | 7_4:-54274505 | None:intergenic |
| ACTTCTTGAGGAAAGGCACG+AGG | 0.700202 | 7_4:-54274843 | None:intergenic |
| TGGAGAGAGGTCTTATGATG+TGG | 0.703310 | 7_4:+54273957 | Msa1163190:CDS |
| TTATAGAGGTACGAGACGGG+CGG | 0.703873 | 7_4:+54271113 | Msa1163190:CDS |
| TATGTGATGACATTGGAGAG+AGG | 0.708423 | 7_4:+54273944 | Msa1163190:CDS |
| TGTGGATGACTTGTGGACAA+CGG | 0.717355 | 7_4:-54271139 | None:intergenic |
| GTTGTTATAGAGGTACGAGA+CGG | 0.721407 | 7_4:+54271109 | Msa1163190:CDS |
| AAAGAGAAGAATGTGCCCAG+CGG | 0.752942 | 7_4:+54272999 | Msa1163190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTTGATATAAATTTAA+GGG | - | chr7_4:54270209-54270228 | None:intergenic | 10.0% |
| !!! | TATTAATTTTTTTTTTAGTG+AGG | - | chr7_4:54270723-54270742 | None:intergenic | 10.0% |
| !! | TTAAATTTCTAATAATCTAA+CGG | - | chr7_4:54270797-54270816 | None:intergenic | 10.0% |
| !!! | AAATTTTTTAAACATTGAAT+TGG | - | chr7_4:54271758-54271777 | None:intergenic | 10.0% |
| !! | AAATAAAAAATAATCACAAT+TGG | - | chr7_4:54272255-54272274 | None:intergenic | 10.0% |
| !!! | ATTTCTTATTTACAAAATAA+AGG | + | chr7_4:54272614-54272633 | Msa1163190:intron | 10.0% |
| !! | AAAATATCAAAAAAATTGAA+CGG | + | chr7_4:54273251-54273270 | Msa1163190:intron | 10.0% |
| !! | AAATAAATAAAATACTAACA+TGG | - | chr7_4:54273508-54273527 | None:intergenic | 10.0% |
| !!! | GTTAGTATTTTATTTATTTT+AGG | + | chr7_4:54273509-54273528 | Msa1163190:intron | 10.0% |
| !! | TATTATTTCATTAATATGAA+AGG | + | chr7_4:54273827-54273846 | Msa1163190:intron | 10.0% |
| !!! | ATTATCATGTAATTATTTTT+TGG | + | chr7_4:54274704-54274723 | Msa1163190:three_prime_UTR | 10.0% |
| !!! | CGTTTTTTGATATAAATTTA+AGG | - | chr7_4:54270210-54270229 | None:intergenic | 15.0% |
| !! | TAGAATTATTAAACAAAAGA+CGG | - | chr7_4:54272730-54272749 | None:intergenic | 15.0% |
| !! | AATGATTTGAAAACAATTAA+AGG | - | chr7_4:54272837-54272856 | None:intergenic | 15.0% |
| !!! | AAGTTCTTTTGAAAATTTAA+CGG | + | chr7_4:54273659-54273678 | Msa1163190:intron | 15.0% |
| !! | TGTGTGAATAAAATAAAATT+AGG | - | chr7_4:54274223-54274242 | None:intergenic | 15.0% |
| !!! | CTTCAATCTAAAAGATTTTA+CGG | + | chr7_4:54270106-54270125 | Msa1163190:five_prime_UTR | 20.0% |
| !!! | AACACATGAAATTCAATTTT+GGG | - | chr7_4:54270448-54270467 | None:intergenic | 20.0% |
| !! | CAAAAAACAGAACTTAAATT+AGG | - | chr7_4:54270677-54270696 | None:intergenic | 20.0% |
| !!! | CTAATTTAAGTTCTGTTTTT+TGG | + | chr7_4:54270675-54270694 | Msa1163190:intron | 20.0% |
| !!! | TTGTATTGATTCAATTCTTT+TGG | + | chr7_4:54271430-54271449 | Msa1163190:intron | 20.0% |
| !! | TGAAAAAACATACGAAAAAA+TGG | - | chr7_4:54271635-54271654 | None:intergenic | 20.0% |
| !! | TACTTATGAAACAAATATTG+TGG | - | chr7_4:54271723-54271742 | None:intergenic | 20.0% |
| !!! | CTTTTCTATATCTAAGAATA+AGG | + | chr7_4:54272297-54272316 | Msa1163190:intron | 20.0% |
| !!! | AAAGAAATAAGTATTTCTGT+AGG | + | chr7_4:54272340-54272359 | Msa1163190:intron | 20.0% |
| !!! | AAGAAATAAGTATTTCTGTA+GGG | + | chr7_4:54272341-54272360 | Msa1163190:intron | 20.0% |
| !! | ACATTCATAAAACAATGTTA+AGG | - | chr7_4:54272481-54272500 | None:intergenic | 20.0% |
| !! | ATTTCATGATACTATTGAAT+AGG | + | chr7_4:54272915-54272934 | Msa1163190:intron | 20.0% |
| !!! | TATGTTTCTGAAGATATTTA+AGG | - | chr7_4:54273076-54273095 | None:intergenic | 20.0% |
| !! | TCGCAATTAATCAATTTATT+TGG | + | chr7_4:54273449-54273468 | Msa1163190:intron | 20.0% |
| !!! | CAGCTAGTATTTTTTATAAT+TGG | - | chr7_4:54273585-54273604 | None:intergenic | 20.0% |
| !! | AATACAATAAATCATGTACT+CGG | - | chr7_4:54273811-54273830 | None:intergenic | 20.0% |
| !! | TATTTCATTAATATGAAAGG+TGG | + | chr7_4:54273830-54273849 | Msa1163190:intron | 20.0% |
| !! | ATTTCATTAATATGAAAGGT+GGG | + | chr7_4:54273831-54273850 | Msa1163190:intron | 20.0% |
| !! | TACATGATATCAAATTAAGA+AGG | - | chr7_4:54274355-54274374 | None:intergenic | 20.0% |
| !! | AAAAGATTTTACGGAACAAA+AGG | + | chr7_4:54270115-54270134 | Msa1163190:five_prime_UTR | 25.0% |
| ! | AATTGTGGAGAAATTGAAAT+TGG | - | chr7_4:54270339-54270358 | None:intergenic | 25.0% |
| !! | GAACACATGAAATTCAATTT+TGG | - | chr7_4:54270449-54270468 | None:intergenic | 25.0% |
| !! | TCACAAGAAATGAACATTTT+TGG | - | chr7_4:54271177-54271196 | None:intergenic | 25.0% |
| ! | AACATTGGTACATAGAATAA+AGG | - | chr7_4:54271203-54271222 | None:intergenic | 25.0% |
| ! | ATGACAAGCAATTATTGAAT+AGG | - | chr7_4:54271544-54271563 | None:intergenic | 25.0% |
| ! | TCACATAATGCTTCTTAATT+TGG | + | chr7_4:54271785-54271804 | Msa1163190:intron | 25.0% |
| ! | CAACTGAATGAAAAATTAAG+AGG | - | chr7_4:54271867-54271886 | None:intergenic | 25.0% |
| !! | TGGTAATAAGAAGAGAATTT+TGG | + | chr7_4:54271919-54271938 | Msa1163190:CDS | 25.0% |
| ! | AGATATAGAAAAGTAATCAC+AGG | - | chr7_4:54272290-54272309 | None:intergenic | 25.0% |
| ! | TAAGGAAACATATCGTTTAT+TGG | + | chr7_4:54272315-54272334 | Msa1163190:intron | 25.0% |
| !!! | CAACTCAATTTTGACTTAAA+AGG | + | chr7_4:54272379-54272398 | Msa1163190:intron | 25.0% |
| ! | CACATTAACAAAATAACAGT+TGG | - | chr7_4:54272755-54272774 | None:intergenic | 25.0% |
| !!! | ATGTGCATTATTTTGTACTA+TGG | + | chr7_4:54272770-54272789 | Msa1163190:intron | 25.0% |
| ! | ACATTCTTCTCTTTAACAAA+CGG | - | chr7_4:54272993-54273012 | None:intergenic | 25.0% |
| !!! | TTGATATTTTAGTTGTGTGT+GGG | - | chr7_4:54273241-54273260 | None:intergenic | 25.0% |
| !!! | TTTGATATTTTAGTTGTGTG+TGG | - | chr7_4:54273242-54273261 | None:intergenic | 25.0% |
| !! | GAAAAATGTATAATCGACTT+AGG | + | chr7_4:54273545-54273564 | Msa1163190:intron | 25.0% |
| ! | TAGCTAGAAATAAATGAACT+GGG | - | chr7_4:54273741-54273760 | None:intergenic | 25.0% |
| ! | TAACCAAAATATGATTCCAA+GGG | - | chr7_4:54274057-54274076 | None:intergenic | 25.0% |
| ! | TTAACCAAAATATGATTCCA+AGG | - | chr7_4:54274058-54274077 | None:intergenic | 25.0% |
| ! | AAACTTGTATCGTTTACAAA+GGG | - | chr7_4:54274150-54274169 | None:intergenic | 25.0% |
| ! | TAGGAAGAAAAAAAATTCAC+TGG | - | chr7_4:54274204-54274223 | None:intergenic | 25.0% |
| ! | TTCTCTATGAATCTACAATT+AGG | - | chr7_4:54274382-54274401 | None:intergenic | 25.0% |
| ! | TCTTGTGTAATTCGTGTTTT+CGG | + | chr7_4:54270475-54270494 | Msa1163190:intron | 30.0% |
| ! | TTCGATTTTGTCTGAATTGT+GGG | - | chr7_4:54270539-54270558 | None:intergenic | 30.0% |
| CACTCAATGTTGTAGATAAT+CGG | + | chr7_4:54270834-54270853 | Msa1163190:intron | 30.0% | |
| TCATATTGCAAAAGCAGAAA+AGG | + | chr7_4:54271057-54271076 | Msa1163190:CDS | 30.0% | |
| !! | GCACAAAGTATTGTCAAATA+GGG | - | chr7_4:54271293-54271312 | None:intergenic | 30.0% |
| !! | AGCACAAAGTATTGTCAAAT+AGG | - | chr7_4:54271294-54271313 | None:intergenic | 30.0% |
| TTGTGCTAAATTGCATATTG+TGG | + | chr7_4:54271307-54271326 | Msa1163190:intron | 30.0% | |
| GATGATAAAATGTACCAATC+AGG | - | chr7_4:54271491-54271510 | None:intergenic | 30.0% | |
| ! | ATTGGTACATTTTATCATCC+AGG | + | chr7_4:54271492-54271511 | Msa1163190:intron | 30.0% |
| ! | TTGGTACATTTTATCATCCA+GGG | + | chr7_4:54271493-54271512 | Msa1163190:intron | 30.0% |
| TTATAGATAGCTTATGAAGG+TGG | - | chr7_4:54271611-54271630 | None:intergenic | 30.0% | |
| CAGCTGATGTAAATGTTAAA+CGG | + | chr7_4:54272177-54272196 | Msa1163190:CDS | 30.0% | |
| GGTGTTCATGATAACATTAT+GGG | - | chr7_4:54273213-54273232 | None:intergenic | 30.0% | |
| !!! | TGATATTTTAGTTGTGTGTG+GGG | - | chr7_4:54273240-54273259 | None:intergenic | 30.0% |
| !! | AAGTTACATTTTTCGGCTTA+GGG | - | chr7_4:54273333-54273352 | None:intergenic | 30.0% |
| ACAACAAAATAAACCAGCAT+TGG | - | chr7_4:54273388-54273407 | None:intergenic | 30.0% | |
| !!! | CTGGTTTATTTTGTTGTAAG+TGG | + | chr7_4:54273391-54273410 | Msa1163190:CDS | 30.0% |
| TATTTCCTGGAATGTTAACT+TGG | - | chr7_4:54273475-54273494 | None:intergenic | 30.0% | |
| TGGAAAACAACAATATTTCC+TGG | - | chr7_4:54273488-54273507 | None:intergenic | 30.0% | |
| CTAGCTAGAAATAAATGAAC+TGG | - | chr7_4:54273742-54273761 | None:intergenic | 30.0% | |
| ! | AGTTTTTGAACATTGAGATC+AGG | - | chr7_4:54274097-54274116 | None:intergenic | 30.0% |
| GAAACTTGTATCGTTTACAA+AGG | - | chr7_4:54274151-54274170 | None:intergenic | 30.0% | |
| !!! | TACCTTTTCTAAAATCTGAC+AGG | - | chr7_4:54274456-54274475 | None:intergenic | 30.0% |
| !! | TGTCAGATTTTAGAAAAGGT+AGG | + | chr7_4:54274455-54274474 | Msa1163190:CDS | 30.0% |
| !! | GATTTTAGAAAAGGTAGGTT+TGG | + | chr7_4:54274460-54274479 | Msa1163190:CDS | 30.0% |
| TCACAGTATATCAGTATACA+GGG | - | chr7_4:54274603-54274622 | None:intergenic | 30.0% | |
| AAACCTTCTATGAACATTTG+AGG | + | chr7_4:54274640-54274659 | Msa1163190:three_prime_UTR | 30.0% | |
| ATGATGCATACAAAATCCTA+TGG | - | chr7_4:54274768-54274787 | None:intergenic | 30.0% | |
| TTCTATAACTTCTTGAGGAA+AGG | - | chr7_4:54274853-54274872 | None:intergenic | 30.0% | |
| CATCATCATCATCTTGCTTA+TGG | + | chr7_4:54270292-54270311 | Msa1163190:CDS | 35.0% | |
| ATTGGTGGAGATAGAGAATT+TGG | - | chr7_4:54270321-54270340 | None:intergenic | 35.0% | |
| TGTGGAGAAATTGAAATTGG+TGG | - | chr7_4:54270336-54270355 | None:intergenic | 35.0% | |
| !!! | TCAATTTTGGGTTACCTGAA+TGG | - | chr7_4:54270436-54270455 | None:intergenic | 35.0% |
| CACGAATTACACAAGAATGA+AGG | - | chr7_4:54270471-54270490 | None:intergenic | 35.0% | |
| TTTGTCTGAATTGTGGGTTT+AGG | - | chr7_4:54270533-54270552 | None:intergenic | 35.0% | |
| ! | CTTCGATTTTGTCTGAATTG+TGG | - | chr7_4:54270540-54270559 | None:intergenic | 35.0% |
| TTGACACTGATCTTTATCAC+TGG | + | chr7_4:54270913-54270932 | Msa1163190:CDS | 35.0% | |
| TGATCTTTATCACTGGACAA+AGG | + | chr7_4:54270920-54270939 | Msa1163190:CDS | 35.0% | |
| TGTGAACTTTATGTGTGTGA+TGG | + | chr7_4:54270970-54270989 | Msa1163190:intron | 35.0% | |
| AAAAGCAGAAAAGGAACTCA+AGG | + | chr7_4:54271066-54271085 | Msa1163190:CDS | 35.0% | |
| !! | CAAGGAACAACTTAAGTTGA+TGG | + | chr7_4:54271084-54271103 | Msa1163190:CDS | 35.0% |
| ! | GTTGATGGATGTTGTTATAG+AGG | + | chr7_4:54271099-54271118 | Msa1163190:CDS | 35.0% |
| !!! | TTTTGGTGTTAACTTACCTG+TGG | - | chr7_4:54271160-54271179 | None:intergenic | 35.0% |
| TATGTACCAATGTTGTCTAG+CGG | + | chr7_4:54271209-54271228 | Msa1163190:intron | 35.0% | |
| ! | TGTTTGCTAAAATTCCGCTA+TGG | + | chr7_4:54271339-54271358 | Msa1163190:intron | 35.0% |
| TTTATCATCCAGGGAATGTT+TGG | + | chr7_4:54271502-54271521 | Msa1163190:intron | 35.0% | |
| TTATCATCCAGGGAATGTTT+GGG | + | chr7_4:54271503-54271522 | Msa1163190:intron | 35.0% | |
| GGCTTATAGATAGCTTATGA+AGG | - | chr7_4:54271614-54271633 | None:intergenic | 35.0% | |
| AGATCTTTCAAACACTCCAT+CGG | + | chr7_4:54271684-54271703 | Msa1163190:intron | 35.0% | |
| TGCATCCAAATACAGTAGTT+AGG | + | chr7_4:54271821-54271840 | Msa1163190:intron | 35.0% | |
| AAAGGCCTAACTACTGTATT+TGG | - | chr7_4:54271829-54271848 | None:intergenic | 35.0% | |
| ATAGATCCATCTACAAAAGC+AGG | - | chr7_4:54271895-54271914 | None:intergenic | 35.0% | |
| ! | TGCTTTTGTAGATGGATCTA+TGG | + | chr7_4:54271894-54271913 | Msa1163190:intron | 35.0% |
| ! | TTTTACTAGGCATGGAACAA+AGG | + | chr7_4:54271997-54272016 | Msa1163190:CDS | 35.0% |
| GGAGGAGAAAAAATCTTGTT+TGG | - | chr7_4:54272060-54272079 | None:intergenic | 35.0% | |
| AACAAGGGATCTTGAAAACA+CGG | - | chr7_4:54272089-54272108 | None:intergenic | 35.0% | |
| GGATCAGATATGTTGAACAA+GGG | - | chr7_4:54272104-54272123 | None:intergenic | 35.0% | |
| AGGATCAGATATGTTGAACA+AGG | - | chr7_4:54272105-54272124 | None:intergenic | 35.0% | |
| TGATCCTATGCTTTATGTAC+AGG | + | chr7_4:54272118-54272137 | Msa1163190:intron | 35.0% | |
| GATCCTATGCTTTATGTACA+GGG | + | chr7_4:54272119-54272138 | Msa1163190:intron | 35.0% | |
| GAAAAGTAATCACAGGAAAG+CGG | - | chr7_4:54272283-54272302 | None:intergenic | 35.0% | |
| !! | CTTTTCCATCTCTAGGAATA+AGG | + | chr7_4:54272406-54272425 | Msa1163190:intron | 35.0% |
| CATTTCCTTATTCCTAGAGA+TGG | - | chr7_4:54272414-54272433 | None:intergenic | 35.0% | |
| TTGTACTATGGAAGTAGATG+TGG | + | chr7_4:54272782-54272801 | Msa1163190:intron | 35.0% | |
| AATAGTTGGATACCCTAATG+TGG | + | chr7_4:54272948-54272967 | Msa1163190:CDS | 35.0% | |
| ATAGTTGGATACCCTAATGT+GGG | + | chr7_4:54272949-54272968 | Msa1163190:CDS | 35.0% | |
| ! | GAGATGATTTTCCCACATTA+GGG | - | chr7_4:54272963-54272982 | None:intergenic | 35.0% |
| ! | AGAGATGATTTTCCCACATT+AGG | - | chr7_4:54272964-54272983 | None:intergenic | 35.0% |
| GGGTGTTCATGATAACATTA+TGG | - | chr7_4:54273214-54273233 | None:intergenic | 35.0% | |
| !!! | GATATTTTAGTTGTGTGTGG+GGG | - | chr7_4:54273239-54273258 | None:intergenic | 35.0% |
| TATGCTGAATATCAAGAGAC+AGG | - | chr7_4:54273300-54273319 | None:intergenic | 35.0% | |
| !! | GAAGTTACATTTTTCGGCTT+AGG | - | chr7_4:54273334-54273353 | None:intergenic | 35.0% |
| AAGCCGAAAAATGTAACTTC+TGG | + | chr7_4:54273334-54273353 | Msa1163190:CDS | 35.0% | |
| AGCCGAAAAATGTAACTTCT+GGG | + | chr7_4:54273335-54273354 | Msa1163190:CDS | 35.0% | |
| ! | ACCCCAGAAGTTACATTTTT+CGG | - | chr7_4:54273340-54273359 | None:intergenic | 35.0% |
| ! | GTTTTTCTTGATCTCAACAG+AGG | + | chr7_4:54273358-54273377 | Msa1163190:CDS | 35.0% |
| TGATTAATTGCGACTTACGT+TGG | - | chr7_4:54273442-54273461 | None:intergenic | 35.0% | |
| !!! | CTAGCTGTTCATTAGCTTTT+CGG | + | chr7_4:54273598-54273617 | Msa1163190:intron | 35.0% |
| ! | TTATTTGGATAGGGAAGCAT+AGG | - | chr7_4:54273630-54273649 | None:intergenic | 35.0% |
| GCTTCCCTATCCAAATAAAA+CGG | + | chr7_4:54273632-54273651 | Msa1163190:intron | 35.0% | |
| ! | CATCCCTTGGAATCATATTT+TGG | + | chr7_4:54274051-54274070 | Msa1163190:intron | 35.0% |
| TTATAGCCTTTGTTCAATGC+AGG | + | chr7_4:54274116-54274135 | Msa1163190:intron | 35.0% | |
| !! | TTCTAAAATCTGACAGGACA+CGG | - | chr7_4:54274450-54274469 | None:intergenic | 35.0% |
| !! | GTCCTGTCAGATTTTAGAAA+AGG | + | chr7_4:54274451-54274470 | Msa1163190:CDS | 35.0% |
| ! | TTAGAAAAGGTAGGTTTGGT+TGG | + | chr7_4:54274464-54274483 | Msa1163190:CDS | 35.0% |
| AAATTACGCGAGAGATATTC+AGG | + | chr7_4:54274558-54274577 | Msa1163190:three_prime_UTR | 35.0% | |
| GTCACAGTATATCAGTATAC+AGG | - | chr7_4:54274604-54274623 | None:intergenic | 35.0% | |
| TGATATACTGTGACTGTGAA+TGG | + | chr7_4:54274610-54274629 | Msa1163190:three_prime_UTR | 35.0% | |
| ! | GTATACAAGTGTTGTACCAT+AGG | + | chr7_4:54274749-54274768 | Msa1163190:three_prime_UTR | 35.0% |
| AGCACTAGCAGCAATAAACA+TGG | + | chr7_4:54270245-54270264 | Msa1163190:exon | 40.0% | |
| !!! | TTTTGGGTTACCTGAATGGT+GGG | - | chr7_4:54270432-54270451 | None:intergenic | 40.0% |
| !!! | ATTTTGGGTTACCTGAATGG+TGG | - | chr7_4:54270433-54270452 | None:intergenic | 40.0% |
| CTTACATCCAATGAACATCG+TGG | + | chr7_4:54270589-54270608 | Msa1163190:intron | 40.0% | |
| AAAGACTCCACGATGTTCAT+TGG | - | chr7_4:54270599-54270618 | None:intergenic | 40.0% | |
| ! | CATCGTGGAGTCTTTTTGAT+TGG | + | chr7_4:54270604-54270623 | Msa1163190:intron | 40.0% |
| ATCGGCAACAACACATTTGA+TGG | + | chr7_4:54270852-54270871 | Msa1163190:CDS | 40.0% | |
| ! | AACACATTTGATGGTTCCGA+AGG | + | chr7_4:54270861-54270880 | Msa1163190:CDS | 40.0% |
| CACATACTATATACCTGCAC+CGG | - | chr7_4:54270954-54270973 | None:intergenic | 40.0% | |
| !! | TTTGAGTGCTGATTACTCCT+TGG | + | chr7_4:54271013-54271032 | Msa1163190:intron | 40.0% |
| ! | TGCTGATTACTCCTTGGTAT+TGG | + | chr7_4:54271019-54271038 | Msa1163190:intron | 40.0% |
| !! | TCTGCTTTTGCAATATGACC+AGG | - | chr7_4:54271055-54271074 | None:intergenic | 40.0% |
| ! | GTTGTTATAGAGGTACGAGA+CGG | + | chr7_4:54271109-54271128 | Msa1163190:CDS | 40.0% |
| ! | TTGTTATAGAGGTACGAGAC+GGG | + | chr7_4:54271110-54271129 | Msa1163190:CDS | 40.0% |
| GTCAAATAGGGTCTATAGCA+GGG | - | chr7_4:54271281-54271300 | None:intergenic | 40.0% | |
| TGTCAAATAGGGTCTATAGC+AGG | - | chr7_4:54271282-54271301 | None:intergenic | 40.0% | |
| ACTACAACGCTATACCATAG+CGG | - | chr7_4:54271356-54271375 | None:intergenic | 40.0% | |
| CGAAACCATGAGCAATGATA+GGG | - | chr7_4:54271465-54271484 | None:intergenic | 40.0% | |
| ACGAAACCATGAGCAATGAT+AGG | - | chr7_4:54271466-54271485 | None:intergenic | 40.0% | |
| TCATGGTTTCGTTACCTGAT+TGG | + | chr7_4:54271474-54271493 | Msa1163190:intron | 40.0% | |
| TTGATTACCCAAACATTCCC+TGG | - | chr7_4:54271513-54271532 | None:intergenic | 40.0% | |
| TGGAAAATGCATAACACCGA+TGG | - | chr7_4:54271703-54271722 | None:intergenic | 40.0% | |
| ACTACTGTATTTGGATGCAC+TGG | - | chr7_4:54271820-54271839 | None:intergenic | 40.0% | |
| ! | AGGTATCGTCGTAGTACAAA+AGG | - | chr7_4:54271847-54271866 | None:intergenic | 40.0% |
| !! | GTTACTCCTGCTTTTGTAGA+TGG | + | chr7_4:54271886-54271905 | Msa1163190:intron | 40.0% |
| TTGTAGATGGATCTATGGCT+TGG | + | chr7_4:54271899-54271918 | Msa1163190:intron | 40.0% | |
| AACTGCAGATCGAAATGCTT+GGG | + | chr7_4:54271967-54271986 | Msa1163190:CDS | 40.0% | |
| !! | CTTGGGCAGAGTATTTTACT+AGG | + | chr7_4:54271984-54272003 | Msa1163190:CDS | 40.0% |
| !! | GCAGAGTATTTTACTAGGCA+TGG | + | chr7_4:54271989-54272008 | Msa1163190:CDS | 40.0% |
| ACAAAGGTTGTCTTCTCCAA+TGG | + | chr7_4:54272013-54272032 | Msa1163190:CDS | 40.0% | |
| CAAAGGTTGTCTTCTCCAAT+GGG | + | chr7_4:54272014-54272033 | Msa1163190:CDS | 40.0% | |
| CTGCTAATTCCTTTGCTAAC+CGG | - | chr7_4:54272160-54272179 | None:intergenic | 40.0% | |
| AATGTTAAACGGAGAGCCAA+AGG | + | chr7_4:54272188-54272207 | Msa1163190:CDS | 40.0% | |
| AATTGCTAGAAGCAACCTAC+CGG | - | chr7_4:54272227-54272246 | None:intergenic | 40.0% | |
| !! | AGGACTACTTTTCCATCTCT+AGG | + | chr7_4:54272399-54272418 | Msa1163190:intron | 40.0% |
| AAACAATGTTAAGGAGCTGC+AGG | - | chr7_4:54272472-54272491 | None:intergenic | 40.0% | |
| ACTATTGAATAGGTTCGAGC+TGG | + | chr7_4:54272925-54272944 | Msa1163190:intron | 40.0% | |
| TTGTTTCCTGACGCTAATGT+TGG | + | chr7_4:54273138-54273157 | Msa1163190:intron | 40.0% | |
| GCCGAAAAATGTAACTTCTG+GGG | + | chr7_4:54273336-54273355 | Msa1163190:CDS | 40.0% | |
| TTTGGCCAAGTTAACATTCC+AGG | + | chr7_4:54273467-54273486 | Msa1163190:intron | 40.0% | |
| TCCCTATCCAAATAAAACGG+TGG | + | chr7_4:54273635-54273654 | Msa1163190:intron | 40.0% | |
| !!! | GCCACCGTTTTATTTGGATA+GGG | - | chr7_4:54273639-54273658 | None:intergenic | 40.0% |
| !!! | TGCCACCGTTTTATTTGGAT+AGG | - | chr7_4:54273640-54273659 | None:intergenic | 40.0% |
| !! | GAACTTGCCACCGTTTTATT+TGG | - | chr7_4:54273645-54273664 | None:intergenic | 40.0% |
| ! | GAACTGGGATAAACTTTTGC+AGG | - | chr7_4:54273726-54273745 | None:intergenic | 40.0% |
| ! | TATGAAAGGTGGGTTCGATT+TGG | + | chr7_4:54273841-54273860 | Msa1163190:intron | 40.0% |
| ! | ATGAAAGGTGGGTTCGATTT+GGG | + | chr7_4:54273842-54273861 | Msa1163190:intron | 40.0% |
| !! | CAAGTTTTATAGCTGCTGAC+TGG | - | chr7_4:54273921-54273940 | None:intergenic | 40.0% |
| CTTGCCATATGTGATGACAT+TGG | + | chr7_4:54273937-54273956 | Msa1163190:CDS | 40.0% | |
| CTCTCCAATGTCATCACATA+TGG | - | chr7_4:54273944-54273963 | None:intergenic | 40.0% | |
| TATGTGATGACATTGGAGAG+AGG | + | chr7_4:54273944-54273963 | Msa1163190:CDS | 40.0% | |
| ! | TGATAATGCATACCTACTGC+TGG | - | chr7_4:54274024-54274043 | None:intergenic | 40.0% |
| TTATCATGACATGCATCCCT+TGG | + | chr7_4:54274038-54274057 | Msa1163190:intron | 40.0% | |
| TTTCGTGTAGACAGTGAATG+TGG | + | chr7_4:54274167-54274186 | Msa1163190:CDS | 40.0% | |
| CTTGCGCTTCATTTGTTCAA+TGG | + | chr7_4:54274403-54274422 | Msa1163190:CDS | 40.0% | |
| GTAAACATCTGACTTCACCT+AGG | - | chr7_4:54274508-54274527 | None:intergenic | 40.0% | |
| GAGCCTCAAATGTTCATAGA+AGG | - | chr7_4:54274646-54274665 | None:intergenic | 40.0% | |
| ! | GAATGGTGGGAGATTGAGAT+TGG | - | chr7_4:54270419-54270438 | None:intergenic | 45.0% |
| ATCTCAATCTCCCACCATTC+AGG | + | chr7_4:54270419-54270438 | Msa1163190:CDS | 45.0% | |
| ! | ACATTTGATGGTTCCGAAGG+AGG | + | chr7_4:54270864-54270883 | Msa1163190:CDS | 45.0% |
| ! | CATTTGATGGTTCCGAAGGA+GGG | + | chr7_4:54270865-54270884 | Msa1163190:CDS | 45.0% |
| GTCAAGACCAGTCCAAAGAT+CGG | - | chr7_4:54270898-54270917 | None:intergenic | 45.0% | |
| ! | CTGGACAAAGGTTTTACGAC+CGG | + | chr7_4:54270932-54270951 | Msa1163190:CDS | 45.0% |
| ! | TACTCCTTGGTATTGGACAG+TGG | + | chr7_4:54271026-54271045 | Msa1163190:intron | 45.0% |
| GAAACCACTGTCCAATACCA+AGG | - | chr7_4:54271033-54271052 | None:intergenic | 45.0% | |
| ! | TGTGGATGACTTGTGGACAA+CGG | - | chr7_4:54271142-54271161 | None:intergenic | 45.0% |
| ACTTACCTGTGGATGACTTG+TGG | - | chr7_4:54271149-54271168 | None:intergenic | 45.0% | |
| AGCAATCCGCTAGACAACAT+TGG | - | chr7_4:54271218-54271237 | None:intergenic | 45.0% | |
| !! | TAGCGGATTGCTGATAACAG+CGG | + | chr7_4:54271226-54271245 | Msa1163190:intron | 45.0% |
| TGCTTCCCTATCATTGCTCA+TGG | + | chr7_4:54271457-54271476 | Msa1163190:intron | 45.0% | |
| CAACTGCAGATCGAAATGCT+TGG | + | chr7_4:54271966-54271985 | Msa1163190:CDS | 45.0% | |
| ATCTTGAAAACACGGAGAGG+TGG | - | chr7_4:54272081-54272100 | None:intergenic | 45.0% | |
| GTGCCCTGTACATAAAGCAT+AGG | - | chr7_4:54272125-54272144 | None:intergenic | 45.0% | |
| TAGGTTCGAGCTGGAATAGT+TGG | + | chr7_4:54272934-54272953 | Msa1163190:intron | 45.0% | |
| AAAGAGAAGAATGTGCCCAG+CGG | + | chr7_4:54272999-54273018 | Msa1163190:CDS | 45.0% | |
| CTCAAGTCTCTTGTAACTCC+TGG | - | chr7_4:54273033-54273052 | None:intergenic | 45.0% | |
| CAGGAGTTACAAGAGACTTG+AGG | + | chr7_4:54273031-54273050 | Msa1163190:CDS | 45.0% | |
| ACAGTACCAACATTAGCGTC+AGG | - | chr7_4:54273147-54273166 | None:intergenic | 45.0% | |
| !! | GTTGAGTGTTGAGCTGTACT+TGG | + | chr7_4:54273165-54273184 | Msa1163190:intron | 45.0% |
| !! | TTTTAGTTGTGTGTGGGGGA+GGG | - | chr7_4:54273235-54273254 | None:intergenic | 45.0% |
| !!! | ATTTTAGTTGTGTGTGGGGG+AGG | - | chr7_4:54273236-54273255 | None:intergenic | 45.0% |
| ! | GAACGGACTTGAAGTCCTAA+TGG | + | chr7_4:54273268-54273287 | Msa1163190:intron | 45.0% |
| TGAGCTCAAGCAAGAAACGA+TGG | + | chr7_4:54273767-54273786 | Msa1163190:intron | 45.0% | |
| ! | TGGGAAAGATCTTGAGTTGC+TGG | + | chr7_4:54273861-54273880 | Msa1163190:CDS | 45.0% |
| ! | TTGAGTTGCTGGATTCTCCT+GGG | + | chr7_4:54273872-54273891 | Msa1163190:CDS | 45.0% |
| !! | ATTCGCATTGGAAGTATCCC+AGG | - | chr7_4:54273892-54273911 | None:intergenic | 45.0% |
| ! | TGGAGAGAGGTCTTATGATG+TGG | + | chr7_4:54273957-54273976 | Msa1163190:CDS | 45.0% |
| CTTACAAAGCTTCCAGCAGT+AGG | + | chr7_4:54274009-54274028 | Msa1163190:CDS | 45.0% | |
| TCTCGACCTGCATTGAACAA+AGG | - | chr7_4:54274125-54274144 | None:intergenic | 45.0% | |
| ! | TAGGTTTGGTTGGACTTCGT+TGG | + | chr7_4:54274474-54274493 | Msa1163190:CDS | 45.0% |
| AACATCTGACTTCACCTAGG+AGG | - | chr7_4:54274505-54274524 | None:intergenic | 45.0% | |
| CTGCGGGTGGGAATAAATTG+TGG | - | chr7_4:54270354-54270373 | None:intergenic | 50.0% | |
| AAGTGGAGAACCTGCTACTG+CGG | - | chr7_4:54270371-54270390 | None:intergenic | 50.0% | |
| AGGTTCTCCACTTCACCTCT+CGG | + | chr7_4:54270378-54270397 | Msa1163190:CDS | 50.0% | |
| !! | TTGAGATTGGAGGGTTGGTG+TGG | - | chr7_4:54270406-54270425 | None:intergenic | 50.0% |
| GGAGATTGAGATTGGAGGGT+TGG | - | chr7_4:54270411-54270430 | None:intergenic | 50.0% | |
| GGTGGGAGATTGAGATTGGA+GGG | - | chr7_4:54270415-54270434 | None:intergenic | 50.0% | |
| TGGTGGGAGATTGAGATTGG+AGG | - | chr7_4:54270416-54270435 | None:intergenic | 50.0% | |
| ! | AAAGGTTTTACGACCGGTGC+AGG | + | chr7_4:54270938-54270957 | Msa1163190:CDS | 50.0% |
| ! | GGTATTGGACAGTGGTTTCC+TGG | + | chr7_4:54271034-54271053 | Msa1163190:intron | 50.0% |
| ! | TTATAGAGGTACGAGACGGG+CGG | + | chr7_4:54271113-54271132 | Msa1163190:CDS | 50.0% |
| GTTGTCCACAAGTCATCCAC+AGG | + | chr7_4:54271141-54271160 | Msa1163190:CDS | 50.0% | |
| !! | AGCGGATTGCTGATAACAGC+GGG | + | chr7_4:54271227-54271246 | Msa1163190:intron | 50.0% |
| AACCATTCCAAGCTGCCCAT+TGG | - | chr7_4:54272032-54272051 | None:intergenic | 50.0% | |
| AATGGGCAGCTTGGAATGGT+TGG | + | chr7_4:54272031-54272050 | Msa1163190:intron | 50.0% | |
| TTGAAAACACGGAGAGGTGG+AGG | - | chr7_4:54272078-54272097 | None:intergenic | 50.0% | |
| GGGATCTTGAAAACACGGAG+AGG | - | chr7_4:54272084-54272103 | None:intergenic | 50.0% | |
| GTACAGGGCACATTGAAGCT+AGG | + | chr7_4:54272134-54272153 | Msa1163190:intron | 50.0% | |
| CAAAGGACTACTTCCTCGTC+CGG | + | chr7_4:54272205-54272224 | Msa1163190:CDS | 50.0% | |
| AGGAGCTGCAGGAAAGTTGT+AGG | - | chr7_4:54272461-54272480 | None:intergenic | 50.0% | |
| TCTCTTGTAACTCCTGGCCT+TGG | - | chr7_4:54273027-54273046 | None:intergenic | 50.0% | |
| TTTAGTTGTGTGTGGGGGAG+GGG | - | chr7_4:54273234-54273253 | None:intergenic | 50.0% | |
| AGAGACAGGTTGCGTCCATT+AGG | - | chr7_4:54273286-54273305 | None:intergenic | 50.0% | |
| CAACAGAGGAAAGCCAATGC+TGG | + | chr7_4:54273372-54273391 | Msa1163190:CDS | 50.0% | |
| GCTCAAGCAAGAAACGATGG+TGG | + | chr7_4:54273770-54273789 | Msa1163190:intron | 50.0% | |
| ! | CTTGAGTTGCTGGATTCTCC+TGG | + | chr7_4:54273871-54273890 | Msa1163190:CDS | 50.0% |
| !! | GACTGGTCACTGATTCGCAT+TGG | - | chr7_4:54273904-54273923 | None:intergenic | 50.0% |
| TTGGTTGGACTTCGTTGGAG+AGG | + | chr7_4:54274479-54274498 | Msa1163190:CDS | 50.0% | |
| AGCGTCAGAGTCTTGCTTCT+AGG | - | chr7_4:54274530-54274549 | None:intergenic | 50.0% | |
| ! | ACTTCTTGAGGAAAGGCACG+AGG | - | chr7_4:54274846-54274865 | None:intergenic | 50.0% |
| TTATTCCCACCCGCAGTAGC+AGG | + | chr7_4:54270358-54270377 | Msa1163190:CDS | 55.0% | |
| AGTGGAGAACCTGCTACTGC+GGG | - | chr7_4:54270370-54270389 | None:intergenic | 55.0% | |
| ACCAGTCCAAAGATCGGTCC+CGG | - | chr7_4:54270892-54270911 | None:intergenic | 55.0% | |
| GTCTTCTCCAATGGGCAGCT+TGG | + | chr7_4:54272022-54272041 | Msa1163190:CDS | 55.0% | |
| CTCCAATGGGCAGCTTGGAA+TGG | + | chr7_4:54272027-54272046 | Msa1163190:CDS | 55.0% | |
| AGGGCACATTGAAGCTAGGC+CGG | + | chr7_4:54272138-54272157 | Msa1163190:intron | 55.0% | |
| GAAGCTAGGCCGGTTAGCAA+AGG | + | chr7_4:54272148-54272167 | Msa1163190:CDS | 55.0% | |
| CGGACGAGGAAGTAGTCCTT+TGG | - | chr7_4:54272207-54272226 | None:intergenic | 55.0% | |
| TAGAAGCAACCTACCGGACG+AGG | - | chr7_4:54272221-54272240 | None:intergenic | 55.0% | |
| GAGAACCTGCTACTGCGGGT+GGG | - | chr7_4:54270366-54270385 | None:intergenic | 60.0% | |
| ! | TGTGGCACCGAGAGGTGAAG+TGG | - | chr7_4:54270388-54270407 | None:intergenic | 60.0% |
| GATGGTTCCGAAGGAGGGAC+CGG | + | chr7_4:54270870-54270889 | Msa1163190:CDS | 60.0% | |
| ATGGTTCCGAAGGAGGGACC+GGG | + | chr7_4:54270871-54270890 | Msa1163190:CDS | 60.0% | |
| ACCGGGACCGATCTTTGGAC+TGG | + | chr7_4:54270888-54270907 | Msa1163190:CDS | 60.0% | |
| GGACTACTTCCTCGTCCGGT+AGG | + | chr7_4:54272209-54272228 | Msa1163190:intron | 60.0% | |
| CTTCGTTGGAGAGGCCTCCT+AGG | + | chr7_4:54274488-54274507 | Msa1163190:CDS | 60.0% | |
| GGAGAACCTGCTACTGCGGG+TGG | - | chr7_4:54270367-54270386 | None:intergenic | 65.0% | |
| !! | AGGGTTGGTGTGGCACCGAG+AGG | - | chr7_4:54270396-54270415 | None:intergenic | 65.0% |
| ATCGGTCCCGGTCCCTCCTT+CGG | - | chr7_4:54270880-54270899 | None:intergenic | 65.0% | |
| GAGGGACCGGGACCGATCTT+TGG | + | chr7_4:54270883-54270902 | Msa1163190:CDS | 65.0% | |
| GAATGTGCCCAGCGGCTCCA+AGG | + | chr7_4:54273007-54273026 | Msa1163190:CDS | 65.0% | |
| !! | CTCCTGGCCTTGGAGCCGCT+GGG | - | chr7_4:54273017-54273036 | None:intergenic | 70.0% |
| !! | ACTCCTGGCCTTGGAGCCGC+TGG | - | chr7_4:54273018-54273037 | None:intergenic | 70.0% |
| TGCCCAGCGGCTCCAAGGCC+AGG | + | chr7_4:54273012-54273031 | Msa1163190:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 54270085 | 54274875 | 54270085 | ID=Msa1163190;Name=Msa1163190 |
| chr7_4 | mRNA | 54270085 | 54274875 | 54270085 | ID=Msa1163190-mRNA-1;Parent=Msa1163190;Name=Msa1163190-mRNA-1;_AED=0.34;_eAED=0.34;_QI=179|0.77|0.9|1|1|1|10|362|425 |
| chr7_4 | exon | 54270085 | 54270440 | 54270085 | ID=Msa1163190-mRNA-1:exon:15763;Parent=Msa1163190-mRNA-1 |
| chr7_4 | exon | 54270849 | 54270959 | 54270849 | ID=Msa1163190-mRNA-1:exon:15764;Parent=Msa1163190-mRNA-1 |
| chr7_4 | exon | 54271046 | 54271162 | 54271046 | ID=Msa1163190-mRNA-1:exon:15765;Parent=Msa1163190-mRNA-1 |
| chr7_4 | exon | 54271905 | 54272048 | 54271905 | ID=Msa1163190-mRNA-1:exon:15766;Parent=Msa1163190-mRNA-1 |
| chr7_4 | exon | 54272140 | 54272226 | 54272140 | ID=Msa1163190-mRNA-1:exon:15767;Parent=Msa1163190-mRNA-1 |
| chr7_4 | exon | 54272937 | 54273052 | 54272937 | ID=Msa1163190-mRNA-1:exon:15768;Parent=Msa1163190-mRNA-1 |
| chr7_4 | exon | 54273282 | 54273443 | 54273282 | ID=Msa1163190-mRNA-1:exon:15769;Parent=Msa1163190-mRNA-1 |
| chr7_4 | exon | 54273849 | 54274030 | 54273849 | ID=Msa1163190-mRNA-1:exon:15770;Parent=Msa1163190-mRNA-1 |
| chr7_4 | exon | 54274138 | 54274195 | 54274138 | ID=Msa1163190-mRNA-1:exon:15771;Parent=Msa1163190-mRNA-1 |
| chr7_4 | exon | 54274390 | 54274875 | 54274390 | ID=Msa1163190-mRNA-1:exon:15772;Parent=Msa1163190-mRNA-1 |
| chr7_4 | five_prime_UTR | 54270085 | 54270263 | 54270085 | ID=Msa1163190-mRNA-1:five_prime_utr;Parent=Msa1163190-mRNA-1 |
| chr7_4 | CDS | 54270264 | 54270440 | 54270264 | ID=Msa1163190-mRNA-1:cds;Parent=Msa1163190-mRNA-1 |
| chr7_4 | CDS | 54270849 | 54270959 | 54270849 | ID=Msa1163190-mRNA-1:cds;Parent=Msa1163190-mRNA-1 |
| chr7_4 | CDS | 54271046 | 54271162 | 54271046 | ID=Msa1163190-mRNA-1:cds;Parent=Msa1163190-mRNA-1 |
| chr7_4 | CDS | 54271905 | 54272048 | 54271905 | ID=Msa1163190-mRNA-1:cds;Parent=Msa1163190-mRNA-1 |
| chr7_4 | CDS | 54272140 | 54272226 | 54272140 | ID=Msa1163190-mRNA-1:cds;Parent=Msa1163190-mRNA-1 |
| chr7_4 | CDS | 54272937 | 54273052 | 54272937 | ID=Msa1163190-mRNA-1:cds;Parent=Msa1163190-mRNA-1 |
| chr7_4 | CDS | 54273282 | 54273443 | 54273282 | ID=Msa1163190-mRNA-1:cds;Parent=Msa1163190-mRNA-1 |
| chr7_4 | CDS | 54273849 | 54274030 | 54273849 | ID=Msa1163190-mRNA-1:cds;Parent=Msa1163190-mRNA-1 |
| chr7_4 | CDS | 54274138 | 54274195 | 54274138 | ID=Msa1163190-mRNA-1:cds;Parent=Msa1163190-mRNA-1 |
| chr7_4 | CDS | 54274390 | 54274513 | 54274390 | ID=Msa1163190-mRNA-1:cds;Parent=Msa1163190-mRNA-1 |
| chr7_4 | three_prime_UTR | 54274514 | 54274875 | 54274514 | ID=Msa1163190-mRNA-1:three_prime_utr;Parent=Msa1163190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
