AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0960880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0960880 MtrunA17_Chr6g0479321 95.694 418 17 1 1 417 1 418 0.0 790
Msa0960880 MtrunA17_Chr8g0393251 64.885 393 121 6 41 417 30 421 2.13e-165 471
Msa0960880 MtrunA17_Chr5g0410131 43.560 427 210 12 1 415 1 408 1.36e-107 323
Msa0960880 MtrunA17_Chr8g0339211 32.184 348 219 5 70 412 32 367 3.51e-54 184
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0960880 AT1G48450.1 65.205 365 114 5 63 417 62 423 1.37e-156 449
Msa0960880 AT3G17800.1 60.000 425 158 6 1 417 1 421 1.55e-151 436
Msa0960880 AT3G17800.2 67.318 358 108 5 65 417 74 427 5.49e-151 435
Msa0960880 AT1G32160.1 46.910 356 178 5 64 415 56 404 5.83e-104 314
Msa0960880 AT1G48450.3 65.368 231 70 4 63 286 62 289 9.92e-95 288
Msa0960880 AT1G48450.2 65.368 231 70 4 63 286 62 289 2.37e-94 287
Msa0960880 AT3G07310.1 35.028 354 185 6 69 417 43 356 1.31e-55 188
Msa0960880 AT3G07310.2 35.507 276 134 5 142 412 11 247 2.12e-46 160
Msa0960880 AT5G48590.1 35.465 344 152 9 77 412 47 328 2.02e-45 160

Find 146 sgRNAs with CRISPR-Local

Find 355 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGGTGTTATAACAATTTC+TGG 0.161704 6_3:-81131084 None:intergenic
CCCTCTCCTCTCCTTTGGTT+TGG 0.214976 6_3:-81131779 None:intergenic
ATTGGTAGTGCAGAAATTTA+TGG 0.229511 6_3:+81130498 Msa0960880:CDS
CCTCTCCTCTCCTTTGGTTT+GGG 0.232639 6_3:-81131778 None:intergenic
ACTTGGTGGGATTAAGCTTT+TGG 0.233720 6_3:+81131856 Msa0960880:three_prime_UTR
ACCAATCAGTGAAAAGTATT+TGG 0.235960 6_3:-81131341 None:intergenic
GCAGTTTCTCTCTCAGATTT+TGG 0.245902 6_3:+81128371 Msa0960880:CDS
CTTACAGGACAGCGGTAAAT+TGG 0.259392 6_3:-81126482 None:intergenic
TCAAATAAAGAGCGACCTTC+TGG 0.264385 6_3:-81131576 None:intergenic
CTTTATTTGATGGCATATTA+TGG 0.266369 6_3:+81131589 Msa0960880:three_prime_UTR
TCAAGCCAAGCAGGGACTTC+GGG 0.273317 6_3:-81130898 None:intergenic
CCATTGCCTTGCTTGGAGTT+AGG 0.287810 6_3:-81128231 None:intergenic
CTTTATTTGACTGCATATTA+TGG 0.308705 6_3:+81131732 Msa0960880:intron
AAGGAAAAGCCTTCTGCTTC+AGG 0.313791 6_3:+81128474 Msa0960880:CDS
CTTGAGAGTGGCATCAGTTC+AGG 0.319724 6_3:+81130916 Msa0960880:CDS
AATGATGCTGACGGCCTCTT+TGG 0.326321 6_3:-81131031 None:intergenic
AAGAGTACTTTGTGGGGAAA+TGG 0.326866 6_3:-81126256 None:intergenic
GAAATGGGAGAGATAATATA+TGG 0.331839 6_3:-81126240 None:intergenic
GAAGGTCGCTCTTTATTTGA+TGG 0.345229 6_3:+81131579 Msa0960880:three_prime_UTR
GGTGTTGTATATAGTGGATT+TGG 0.346035 6_3:+81131361 Msa0960880:three_prime_UTR
GCCATATGAATTTCTTCCCT+TGG 0.352819 6_3:-81131275 None:intergenic
GAACTCAGTTTAGGACAAAA+TGG 0.353196 6_3:-81131236 None:intergenic
AACAACCCTCTCCTCTCCTT+TGG 0.353437 6_3:-81131784 None:intergenic
CAATCTCTTTCTCTCTCTCT+AGG 0.354489 6_3:+81126204 Msa0960880:five_prime_UTR
CTACTTCTCGGCAACCGATC+AGG 0.366280 6_3:+81130655 Msa0960880:CDS
TTGTTTCGTCTTCCAAAGTT+TGG 0.370425 6_3:-81130834 None:intergenic
TCCATAACGCCACATCCTTC+TGG 0.373664 6_3:+81130544 Msa0960880:CDS
AATCATACTGAAGCATTGTT+TGG 0.374610 6_3:+81131057 Msa0960880:CDS
CTTCTGGTCAAGTTGATTCA+TGG 0.375052 6_3:+81130560 Msa0960880:CDS
CTGATTGGTGTTGTATATAG+TGG 0.382099 6_3:+81131355 Msa0960880:three_prime_UTR
AAGCTGTGAATTTATTTGTA+AGG 0.384872 6_3:-81131468 None:intergenic
GAAATGATTCGATACCTTAC+AGG 0.397948 6_3:-81126497 None:intergenic
AGAGTACTTTGTGGGGAAAT+GGG 0.398111 6_3:-81126255 None:intergenic
TCATCATCTGCAGACTCATC+TGG 0.400084 6_3:+81128303 Msa0960880:CDS
TCTCCTCCCATTGCCTTGCT+TGG 0.400672 6_3:-81128238 None:intergenic
GAAAACTATTAGCCAAACTT+TGG 0.403655 6_3:+81130822 Msa0960880:CDS
ATCATCAAAATTAGCATTGG+TGG 0.408519 6_3:+81131135 Msa0960880:CDS
AAGCGAGACGGTAGATCTTC+CGG 0.414624 6_3:-81126452 None:intergenic
GTCCGTGTAAAAGATAATAA+AGG 0.415356 6_3:-81131550 None:intergenic
TGAGAGAGAAACTGCCCTAC+TGG 0.415392 6_3:-81128363 None:intergenic
CAGTTATTTCATTGGTTGAC+GGG 0.416170 6_3:-81131919 None:intergenic
GTGGCTTTCGATCAACTCAT+AGG 0.419342 6_3:-81130626 None:intergenic
AGGGGCGTAAAACAAAATTA+TGG 0.419930 6_3:-81126134 None:intergenic
CAATTTACCGCTGTCCTGTA+AGG 0.425933 6_3:+81126483 Msa0960880:CDS
GAGTGAGCAGAACTCAGTTT+AGG 0.429314 6_3:-81131245 None:intergenic
ACCAGAAGGATGTGGCGTTA+TGG 0.430448 6_3:-81130545 None:intergenic
TGTGAATTTATTTGTAAGGA+AGG 0.431963 6_3:-81131464 None:intergenic
TGTTAGTTACAGTAAGAGTC+AGG 0.437921 6_3:-81126154 None:intergenic
CATAACCATCACGATCGGTT+TGG 0.439727 6_3:-81128446 None:intergenic
CAGGAGAATTGCTGAGGTAA+AGG 0.440956 6_3:+81130435 Msa0960880:intron
CTCAAGCCAAGCAGGGACTT+CGG 0.447735 6_3:-81130899 None:intergenic
GATCTTCCGGCGAACATTGA+CGG 0.448170 6_3:-81126439 None:intergenic
CTAGAGAGAGAGAAAGAGAT+TGG 0.454104 6_3:-81126203 None:intergenic
AATCTCTTTCTCTCTCTCTA+GGG 0.465461 6_3:+81126205 Msa0960880:five_prime_UTR
TAGCTCAGATCAGCAAACTA+AGG 0.467575 6_3:+81130692 Msa0960880:CDS
AGCCACTTGGCTCTACTTCT+CGG 0.468124 6_3:+81130643 Msa0960880:CDS
TTAGAGAGAGAAAGGTAAAG+TGG 0.468309 6_3:-81126177 None:intergenic
ATGCCACTCTCAAGCCAAGC+AGG 0.468609 6_3:-81130907 None:intergenic
CCCACCCCGAAGTCCCTGCT+TGG 0.469772 6_3:+81130893 Msa0960880:CDS
GATATCAAAGGACATCATAT+AGG 0.470294 6_3:-81130977 None:intergenic
AATTTCTTCCCTTGGATGCA+TGG 0.470691 6_3:-81131267 None:intergenic
TCGTGATGGTTATGAACAAA+AGG 0.472365 6_3:+81128455 Msa0960880:CDS
GGCATCAGTTCAGGTGCAAA+TGG 0.480037 6_3:+81130925 Msa0960880:CDS
ACTGGAGACTCGAGCTTTAG+TGG 0.480349 6_3:-81128345 None:intergenic
AGATTTGAAGAGTACTTTGT+GGG 0.481004 6_3:-81126263 None:intergenic
CAGTTCAGGTGCAAATGGTC+AGG 0.486052 6_3:+81130930 Msa0960880:CDS
TATGCTGCGTCAGTAATGTA+TGG 0.487588 6_3:+81130727 Msa0960880:CDS
TGTTGTTCAACGGTTCCAGC+TGG 0.491306 6_3:+81130765 Msa0960880:CDS
CTCCTAGCCGATTCACTTGG+TGG 0.492037 6_3:+81131842 Msa0960880:three_prime_UTR
CTGCTCACTCCATGCATCCA+AGG 0.495822 6_3:+81131258 Msa0960880:three_prime_UTR
CTTAATCCCACCAAGTGAAT+CGG 0.497989 6_3:-81131849 None:intergenic
GCGAACATTGACGGCTTACA+CGG 0.501761 6_3:-81126430 None:intergenic
CCTAACTCCAAGCAAGGCAA+TGG 0.507269 6_3:+81128231 Msa0960880:CDS
TCCAAGGGAAGAAATTCATA+TGG 0.508483 6_3:+81131274 Msa0960880:three_prime_UTR
GGGAAGAAATTCATATGGCT+TGG 0.511086 6_3:+81131279 Msa0960880:three_prime_UTR
TCAGTTATTTCATTGGTTGA+CGG 0.513689 6_3:-81131920 None:intergenic
TTCTGAAGCGTGTTGTTCAA+CGG 0.518051 6_3:+81130755 Msa0960880:CDS
GATTCATGGCCAAGTGAAGA+TGG 0.519397 6_3:+81130574 Msa0960880:CDS
CAGCAAACTAAGGGTAGGAC+AGG 0.526223 6_3:+81130702 Msa0960880:CDS
GTAGCCTTGCTATACATTGT+CGG 0.532238 6_3:+81131754 Msa0960880:three_prime_UTR
CCAAGCAGGGACTTCGGGGT+GGG 0.541193 6_3:-81130893 None:intergenic
CTGGAGACTCGAGCTTTAGT+GGG 0.541450 6_3:-81128344 None:intergenic
GAAATCATCAAAATTAGCAT+TGG 0.542762 6_3:+81131132 Msa0960880:CDS
CTAACTCCAAGCAAGGCAAT+GGG 0.552574 6_3:+81128232 Msa0960880:CDS
TCCTAGCCGATTCACTTGGT+GGG 0.554591 6_3:+81131843 Msa0960880:three_prime_UTR
TGAAAAGTTGTCTACAAAGT+CGG 0.560389 6_3:+81131397 Msa0960880:three_prime_UTR
CCCAAACCAAAGGAGAGGAG+AGG 0.562148 6_3:+81131778 Msa0960880:three_prime_UTR
CTGAGGTAAAGGCGAAAGAG+AGG 0.562909 6_3:+81130446 Msa0960880:CDS
GAAGACGAAACAAGAATCGC+TGG 0.564276 6_3:+81130844 Msa0960880:CDS
CAAGCCAAGCAGGGACTTCG+GGG 0.566373 6_3:-81130897 None:intergenic
TGCTCACTCCATGCATCCAA+GGG 0.567030 6_3:+81131259 Msa0960880:three_prime_UTR
GAAATTGTTATAACACCAGA+GGG 0.569784 6_3:+81131087 Msa0960880:CDS
GCCAAGCAGGGACTTCGGGG+TGG 0.570752 6_3:-81130894 None:intergenic
AGATAACAGTGTCTAGGTTG+CGG 0.571238 6_3:+81130953 Msa0960880:CDS
GTCCCTGCTTGGCTTGAGAG+TGG 0.575084 6_3:+81130904 Msa0960880:CDS
AGAAGGATGTGGCGTTATGG+AGG 0.578345 6_3:-81130542 None:intergenic
TGAGTTGATCGAAAGCCACT+TGG 0.581040 6_3:+81130630 Msa0960880:CDS
GGAGGGTACTAAAGAAACAT+TGG 0.581684 6_3:-81130524 None:intergenic
TTGTTCATAACCATCACGAT+CGG 0.582645 6_3:-81128451 None:intergenic
TGGAAATAGAAGGGGTCTTG+TGG 0.584967 6_3:+81128269 Msa0960880:CDS
GGGTGGGACATAACTTGAGA+AGG 0.586260 6_3:-81130877 None:intergenic
AGAAATTGTTATAACACCAG+AGG 0.589532 6_3:+81131086 Msa0960880:CDS
CTAAAGCTCGAGTCTCCAGT+AGG 0.590159 6_3:+81128348 Msa0960880:CDS
AATCTCCTAGCCGATTCACT+TGG 0.594299 6_3:+81131839 Msa0960880:three_prime_UTR
CATGAATCAACTTGACCAGA+AGG 0.595770 6_3:-81130559 None:intergenic
TGCCACTCTCAAGCCAAGCA+GGG 0.600263 6_3:-81130906 None:intergenic
CTGTAATGTCTCGATATCAA+AGG 0.601046 6_3:-81130989 None:intergenic
GTCAGGAGATAACAGTGTCT+AGG 0.602177 6_3:+81130947 Msa0960880:CDS
AAGTGAAGATGGAAAACTTG+AGG 0.603698 6_3:+81130585 Msa0960880:CDS
TCAACTTGACCAGAAGGATG+TGG 0.603982 6_3:-81130553 None:intergenic
CCAAACCAAAGGAGAGGAGA+GGG 0.606155 6_3:+81131779 Msa0960880:three_prime_UTR
TTACACGGCCGTGCAGATGA+CGG 0.606348 6_3:-81126415 None:intergenic
ATGATTCTCAATGATGCTGA+CGG 0.610568 6_3:-81131040 None:intergenic
TTGAGAGCTATGTTGACTCA+AGG 0.611300 6_3:+81131211 Msa0960880:CDS
AAGTCAGTTCCTGAAGCAGA+AGG 0.615870 6_3:-81128483 None:intergenic
GTTAGTTACAGTAAGAGTCA+GGG 0.617046 6_3:-81126153 None:intergenic
AGAAGAAATATTGTACACAT+TGG 0.619936 6_3:+81130480 Msa0960880:CDS
TAAAGCTCGAGTCTCCAGTA+GGG 0.620318 6_3:+81128349 Msa0960880:CDS
TGTAAGCCGTCAATGTTCGC+CGG 0.621024 6_3:+81126433 Msa0960880:CDS
CAATTCCAAACCGATCGTGA+TGG 0.622423 6_3:+81128441 Msa0960880:CDS
CATTGTCGGTCCCAAACCAA+AGG 0.624160 6_3:+81131768 Msa0960880:three_prime_UTR
GAAGGATGTGGCGTTATGGA+GGG 0.624843 6_3:-81130541 None:intergenic
CAGATCAGCAAACTAAGGGT+AGG 0.626934 6_3:+81130697 Msa0960880:CDS
TCTGTACCTAACTCCAAGCA+AGG 0.627676 6_3:+81128225 Msa0960880:CDS
ACTTCTCGGCAACCGATCAG+GGG 0.630323 6_3:+81130657 Msa0960880:CDS
AGCTCAGATCAGCAAACTAA+GGG 0.633157 6_3:+81130693 Msa0960880:CDS
GCGTAAAACAAAATTATGGT+CGG 0.634182 6_3:-81126130 None:intergenic
GATTTGAAGAGTACTTTGTG+GGG 0.634865 6_3:-81126262 None:intergenic
CTGTTCTTCCGTCATCTGCA+CGG 0.634971 6_3:+81126407 Msa0960880:CDS
TCCCACCAAGTGAATCGGCT+AGG 0.643560 6_3:-81131844 None:intergenic
AGGACAGCGGTAAATTGGAA+CGG 0.649614 6_3:-81126477 None:intergenic
ACTCCAAGCAAGGCAATGGG+AGG 0.653970 6_3:+81128235 Msa0960880:CDS
TCGGTCCCAAACCAAAGGAG+AGG 0.657573 6_3:+81131773 Msa0960880:three_prime_UTR
ACTGCAGCAGACATGAGATG+TGG 0.659084 6_3:-81128402 None:intergenic
GGGACCGACAATGTATAGCA+AGG 0.659731 6_3:-81131758 None:intergenic
AGTTATTTCATTGGTTGACG+GGG 0.659990 6_3:-81131918 None:intergenic
GAAAATGGAAGCGACACGCA+CGG 0.660048 6_3:+81126366 Msa0960880:exon
CTGCAGCAGACATGAGATGT+GGG 0.661921 6_3:-81128401 None:intergenic
TGCAACGATTAGATCCAAAG+AGG 0.669949 6_3:+81131017 Msa0960880:CDS
GGTGGGACATAACTTGAGAA+GGG 0.672914 6_3:-81130876 None:intergenic
TTAGTTACAGTAAGAGTCAG+GGG 0.676676 6_3:-81126152 None:intergenic
TGGAGACTCGAGCTTTAGTG+GGG 0.681767 6_3:-81128343 None:intergenic
ATTGGAACGGAAAAGCGAGA+CGG 0.711366 6_3:-81126464 None:intergenic
TTCGATACCTTACAGGACAG+CGG 0.714406 6_3:-81126490 None:intergenic
TGCCGAGAAGTAGAGCCAAG+TGG 0.729677 6_3:-81130645 None:intergenic
AAATTGTTATAACACCAGAG+GGG 0.803584 6_3:+81131088 Msa0960880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTAAATATATCTTGT+TGG + chr6_3:81128863-81128882 Msa0960880:intron 10.0%
!!! CAATATCTTTTTTTTTTTTA+TGG - chr6_3:81130078-81130097 None:intergenic 10.0%
!!! TAACAATATCTTTTTTTTTA+TGG - chr6_3:81130239-81130258 None:intergenic 10.0%
!! TATTCAAAATTAACAAACAT+AGG - chr6_3:81126686-81126705 None:intergenic 15.0%
!!! TAGTTGATTTTAATAGTTTA+GGG - chr6_3:81127135-81127154 None:intergenic 15.0%
!!! TTAGTTGATTTTAATAGTTT+AGG - chr6_3:81127134-81127153 None:intergenic 15.0%
!! AACTATTAAAATCAACTAAA+AGG - chr6_3:81127010-81127029 None:intergenic 15.0%
!!! TAACATGTTTTATAATACTT+TGG + chr6_3:81127918-81127937 Msa0960880:intron 15.0%
!! ATATTGCATTTATATTTGAT+TGG + chr6_3:81128068-81128087 Msa0960880:intron 15.0%
!! AATAAAATACGTTAATTTAG+TGG - chr6_3:81128135-81128154 None:intergenic 15.0%
!!! ATTTTAATACATTAGATTTG+AGG + chr6_3:81128152-81128171 Msa0960880:intron 15.0%
!!! TTTTAATACATTAGATTTGA+GGG + chr6_3:81128153-81128172 Msa0960880:intron 15.0%
!!! TAGCTGTTTTTTTTTTTTAA+AGG - chr6_3:81128944-81128963 None:intergenic 15.0%
!!! AGATAATTTTTTATCTGATT+TGG + chr6_3:81128997-81129016 Msa0960880:intron 15.0%
!!! GATAATTTTTTATCTGATTT+GGG + chr6_3:81128998-81129017 Msa0960880:intron 15.0%
!!! TTTTCAATTCTCTATTTATT+AGG + chr6_3:81129102-81129121 Msa0960880:intron 15.0%
!!! ATATTTTATTGATGTATTTG+TGG + chr6_3:81130029-81130048 Msa0960880:intron 15.0%
!!! GATTTTTGTTTCTATTATAT+TGG + chr6_3:81130321-81130340 Msa0960880:intron 15.0%
!!! ATAAACTAGTTTAAGGAATA+AGG + chr6_3:81127074-81127093 Msa0960880:intron 20.0%
!! AATTCATTTGAATGATGTAA+GGG + chr6_3:81127230-81127249 Msa0960880:intron 20.0%
!! TTATTAGCAATATTCCAAAA+AGG - chr6_3:81127319-81127338 None:intergenic 20.0%
!!! TTTTTGGAATATTGCTAATA+AGG + chr6_3:81127318-81127337 Msa0960880:intron 20.0%
!!! TTTTGGAATATTGCTAATAA+GGG + chr6_3:81127319-81127338 Msa0960880:intron 20.0%
!! ACAAATTTAGTGACTAAATT+CGG + chr6_3:81127556-81127575 Msa0960880:intron 20.0%
!!! ATATGTATGGGATTTTTTAT+TGG + chr6_3:81127706-81127725 Msa0960880:intron 20.0%
!!! ATTCCAATACTTTTAACAAT+CGG + chr6_3:81127734-81127753 Msa0960880:intron 20.0%
!!! TTTATAATACTTTGGTTTTG+TGG + chr6_3:81127926-81127945 Msa0960880:intron 20.0%
!! ATATAAATGCAATATAGAAC+TGG - chr6_3:81128063-81128082 None:intergenic 20.0%
!!! TTCAAGTTTTATCTGTATTT+TGG + chr6_3:81129033-81129052 Msa0960880:intron 20.0%
!!! TCAAGTTTTATCTGTATTTT+GGG + chr6_3:81129034-81129053 Msa0960880:intron 20.0%
!! GAATTGAAAAGAAAAAAAGT+AGG - chr6_3:81129092-81129111 None:intergenic 20.0%
!! TTTGTACACATATATATACA+AGG - chr6_3:81129139-81129158 None:intergenic 20.0%
!! TCTATTTCAATATACAATCA+AGG + chr6_3:81129160-81129179 Msa0960880:intron 20.0%
!! AATGAAAATAATGCCTATAA+TGG + chr6_3:81129249-81129268 Msa0960880:intron 20.0%
!! GATATATTAAGATCCATTAT+AGG - chr6_3:81129265-81129284 None:intergenic 20.0%
!!! TACAAAATGTTTTTAATGAC+CGG + chr6_3:81129314-81129333 Msa0960880:intron 20.0%
!!! CATTAGTAGTAATTTGTATT+CGG + chr6_3:81129417-81129436 Msa0960880:intron 20.0%
!! GTAGAATAATCTAATCTAAT+TGG - chr6_3:81129464-81129483 None:intergenic 20.0%
!! AAAGAATTACATCAATGATA+AGG + chr6_3:81129644-81129663 Msa0960880:intron 20.0%
!! TTATGGATTCAAACTAAATA+TGG - chr6_3:81130061-81130080 None:intergenic 20.0%
!! TTATGGATTCAAACTAAATA+TGG - chr6_3:81130061-81130080 None:intergenic 20.0%
!!! TTTGTTTCTATTATATTGGA+AGG + chr6_3:81130325-81130344 Msa0960880:intron 20.0%
!!! TTCCTTTATTATCTTTTACA+CGG + chr6_3:81131548-81131567 Msa0960880:three_prime_UTR 20.0%
! GTTGAATGAAAGAAGAAAAA+AGG - chr6_3:81126319-81126338 None:intergenic 25.0%
! GTCAACAGCTATAAAAATTT+GGG - chr6_3:81126914-81126933 None:intergenic 25.0%
! TGTCAACAGCTATAAAAATT+TGG - chr6_3:81126915-81126934 None:intergenic 25.0%
!! ATGGATGAGAGTATAATTTA+AGG - chr6_3:81127036-81127055 None:intergenic 25.0%
!! TCCTTCAATAAACTAGTTTA+AGG + chr6_3:81127067-81127086 Msa0960880:intron 25.0%
!! TCCTTAAACTAGTTTATTGA+AGG - chr6_3:81127071-81127090 None:intergenic 25.0%
! TAGTTTAGAGACCAAAAAAT+TGG + chr6_3:81127148-81127167 Msa0960880:intron 25.0%
! GAATTCATTTGAATGATGTA+AGG + chr6_3:81127229-81127248 Msa0960880:intron 25.0%
!! TTGATAATAGATCAAGATAG+AGG + chr6_3:81127259-81127278 Msa0960880:intron 25.0%
!! GATTAACTTTTTGCAATTCT+AGG + chr6_3:81127291-81127310 Msa0960880:intron 25.0%
!! TTTGGAATATTGCTAATAAG+GGG + chr6_3:81127320-81127339 Msa0960880:intron 25.0%
! TAGCATACTTTATGTTGAAA+CGG - chr6_3:81127364-81127383 None:intergenic 25.0%
! TGTTGTATATAAACTTCTCT+TGG + chr6_3:81127476-81127495 Msa0960880:intron 25.0%
! AGTTATAAGACTTGAAATCA+TGG - chr6_3:81127616-81127635 None:intergenic 25.0%
! TAACTTAGCTACATATGTAT+GGG + chr6_3:81127694-81127713 Msa0960880:intron 25.0%
!! TTCCAATACTTTTAACAATC+GGG + chr6_3:81127735-81127754 Msa0960880:intron 25.0%
!! ATTTTCTGTTGGAAATAGAA+GGG + chr6_3:81128260-81128279 Msa0960880:CDS 25.0%
! CTCAGATATAAGAACATATA+TGG - chr6_3:81128556-81128575 None:intergenic 25.0%
!! AAAGTTAGTTTCTTGCTTAT+TGG + chr6_3:81128576-81128595 Msa0960880:intron 25.0%
! ATTGGTCAAACTTAGATAAA+AGG + chr6_3:81128594-81128613 Msa0960880:intron 25.0%
!! TAATTGATCCATTGATTGAT+AGG + chr6_3:81128621-81128640 Msa0960880:intron 25.0%
! TTATATCGATGAAATTGATG+TGG - chr6_3:81128772-81128791 None:intergenic 25.0%
! TAGCTACATTCTAAATCATA+GGG + chr6_3:81129188-81129207 Msa0960880:intron 25.0%
! ATGTAACTTTATCATATTGC+CGG - chr6_3:81129336-81129355 None:intergenic 25.0%
! TATATAAACACATTTGTGGT+TGG - chr6_3:81129532-81129551 None:intergenic 25.0%
! AACCACAAATGTGTTTATAT+AGG + chr6_3:81129531-81129550 Msa0960880:intron 25.0%
!! ATTTTACAAAGTAAAAGCTG+TGG + chr6_3:81129687-81129706 Msa0960880:intron 25.0%
!!! AATTGTTTCAAGTTAGTGTT+TGG + chr6_3:81129932-81129951 Msa0960880:intron 25.0%
!!! TATTGTTTTAAGTTAGCGTT+TGG + chr6_3:81130093-81130112 Msa0960880:intron 25.0%
! ACCAAAAATGAAAAAAAGTG+AGG + chr6_3:81130379-81130398 Msa0960880:intron 25.0%
!!! ACCTCACTTTTTTTCATTTT+TGG - chr6_3:81130383-81130402 None:intergenic 25.0%
! AGAAGAAATATTGTACACAT+TGG + chr6_3:81130480-81130499 Msa0960880:CDS 25.0%
! GAAATCATCAAAATTAGCAT+TGG + chr6_3:81131132-81131151 Msa0960880:CDS 25.0%
!!! TTACTTTTGGTTCTTTTCTT+TGG + chr6_3:81131184-81131203 Msa0960880:CDS 25.0%
!!! TACTTTTGGTTCTTTTCTTT+GGG + chr6_3:81131185-81131204 Msa0960880:CDS 25.0%
! TCAATTGCGCTAATAAAAAT+TGG - chr6_3:81131318-81131337 None:intergenic 25.0%
! TGTGAATTTATTTGTAAGGA+AGG - chr6_3:81131467-81131486 None:intergenic 25.0%
! AAGCTGTGAATTTATTTGTA+AGG - chr6_3:81131471-81131490 None:intergenic 25.0%
!! CTTTATTTGATGGCATATTA+TGG + chr6_3:81131589-81131608 Msa0960880:three_prime_UTR 25.0%
!! CTTTATTTGACTGCATATTA+TGG + chr6_3:81131732-81131751 Msa0960880:intron 25.0%
GCGTAAAACAAAATTATGGT+CGG - chr6_3:81126133-81126152 None:intergenic 30.0%
!! ATTGGATTTTAGAGAGAGAA+AGG - chr6_3:81126188-81126207 None:intergenic 30.0%
GAAATGGGAGAGATAATATA+TGG - chr6_3:81126243-81126262 None:intergenic 30.0%
!! AGATTTGAAGAGTACTTTGT+GGG - chr6_3:81126266-81126285 None:intergenic 30.0%
!! AAGATTTGAAGAGTACTTTG+TGG - chr6_3:81126267-81126286 None:intergenic 30.0%
! GCTTTTATCACAGTTGAAAA+TGG + chr6_3:81126351-81126370 Msa0960880:intron 30.0%
GAATTGCATGTTGAAATTGA+TGG + chr6_3:81126641-81126660 Msa0960880:intron 30.0%
AAGACAAATATTTGATCCTG+TGG + chr6_3:81126722-81126741 Msa0960880:intron 30.0%
GATATTGCTACTCGAATTAA+TGG + chr6_3:81126755-81126774 Msa0960880:intron 30.0%
TTAAAATTGAACACAGACAC+AGG - chr6_3:81126964-81126983 None:intergenic 30.0%
TAATATCTCTCTCACCAATT+TGG + chr6_3:81126981-81127000 Msa0960880:intron 30.0%
TAATAGTTTAGGGACCAAAT+TGG - chr6_3:81126998-81127017 None:intergenic 30.0%
TGTACTCTCATTCATCAATT+TGG - chr6_3:81127101-81127120 None:intergenic 30.0%
!! ATGAATGAGAGTACAGTTTT+AGG + chr6_3:81127106-81127125 Msa0960880:intron 30.0%
GTGTTTATTGTAAGGTGTAT+CGG + chr6_3:81127521-81127540 Msa0960880:intron 30.0%
ATAAGACTTGAAATCATGGT+TGG - chr6_3:81127612-81127631 None:intergenic 30.0%
CTAACTTAGCTACATATGTA+TGG + chr6_3:81127693-81127712 Msa0960880:intron 30.0%
! TTCCCGATTGTTAAAAGTAT+TGG - chr6_3:81127740-81127759 None:intergenic 30.0%
AATACATCATCAGCAAAGTT+TGG - chr6_3:81127786-81127805 None:intergenic 30.0%
! AAACTTTGCTGATGATGTAT+TGG + chr6_3:81127785-81127804 Msa0960880:intron 30.0%
!! TTTTGCTTGCTGATTGTTTT+TGG + chr6_3:81128183-81128202 Msa0960880:intron 30.0%
! GATTTTCTGTTGGAAATAGA+AGG + chr6_3:81128259-81128278 Msa0960880:CDS 30.0%
! TTTTCTGTTGGAAATAGAAG+GGG + chr6_3:81128261-81128280 Msa0960880:CDS 30.0%
TCACGATAAAATAATAGTGC+TGG - chr6_3:81128802-81128821 None:intergenic 30.0%
TCTCTATTTATTAGGTAGTC+TGG + chr6_3:81129110-81129129 Msa0960880:intron 30.0%
CTAGCTACATTCTAAATCAT+AGG + chr6_3:81129187-81129206 Msa0960880:intron 30.0%
TAAACATATTAGCAGTTGAC+TGG + chr6_3:81129485-81129504 Msa0960880:intron 30.0%
AGCCTATATAAACACATTTG+TGG - chr6_3:81129536-81129555 None:intergenic 30.0%
TATAGGCTATTCTAACCTAA+TGG + chr6_3:81129548-81129567 Msa0960880:intron 30.0%
ATAGGCTATTCTAACCTAAT+GGG + chr6_3:81129549-81129568 Msa0960880:intron 30.0%
! CATCAATTGGTTTCACTTAA+TGG + chr6_3:81129766-81129785 Msa0960880:intron 30.0%
TGTGATACATAAGTCTTACA+TGG - chr6_3:81129792-81129811 None:intergenic 30.0%
CCTCTTTATAGGTAAAAGTA+AGG - chr6_3:81129848-81129867 None:intergenic 30.0%
!! CCTTACTTTTACCTATAAAG+AGG + chr6_3:81129845-81129864 Msa0960880:intron 30.0%
ATCACTTAGAACCTCTTTAT+AGG - chr6_3:81129859-81129878 None:intergenic 30.0%
! GCAATTCTCCTGTAAAATTT+TGG - chr6_3:81130427-81130446 None:intergenic 30.0%
!! ATTGGTAGTGCAGAAATTTA+TGG + chr6_3:81130498-81130517 Msa0960880:CDS 30.0%
! TTTTTATTGTCTTTTCCAGC+TGG - chr6_3:81130783-81130802 None:intergenic 30.0%
GAAAACTATTAGCCAAACTT+TGG + chr6_3:81130822-81130841 Msa0960880:CDS 30.0%
GATATCAAAGGACATCATAT+AGG - chr6_3:81130980-81130999 None:intergenic 30.0%
!! AATCATACTGAAGCATTGTT+TGG + chr6_3:81131057-81131076 Msa0960880:CDS 30.0%
!! TCTGGTGTTATAACAATTTC+TGG - chr6_3:81131087-81131106 None:intergenic 30.0%
AGAAATTGTTATAACACCAG+AGG + chr6_3:81131086-81131105 Msa0960880:CDS 30.0%
GAAATTGTTATAACACCAGA+GGG + chr6_3:81131087-81131106 Msa0960880:CDS 30.0%
AAATTGTTATAACACCAGAG+GGG + chr6_3:81131088-81131107 Msa0960880:CDS 30.0%
! ATCATCAAAATTAGCATTGG+TGG + chr6_3:81131135-81131154 Msa0960880:CDS 30.0%
!!! GTTTTAGAAGCTGTTACTTT+TGG + chr6_3:81131171-81131190 Msa0960880:CDS 30.0%
! TCCAAATACTTTTCACTGAT+TGG + chr6_3:81131340-81131359 Msa0960880:three_prime_UTR 30.0%
!! ACCAATCAGTGAAAAGTATT+TGG - chr6_3:81131344-81131363 None:intergenic 30.0%
TGAAAAGTTGTCTACAAAGT+CGG + chr6_3:81131397-81131416 Msa0960880:three_prime_UTR 30.0%
GTCCGTGTAAAAGATAATAA+AGG - chr6_3:81131553-81131572 None:intergenic 30.0%
! AAATTTTACATTGTCTGTCG+AGG - chr6_3:81131814-81131833 None:intergenic 30.0%
! AGGGGCGTAAAACAAAATTA+TGG - chr6_3:81126137-81126156 None:intergenic 35.0%
TTAGTTACAGTAAGAGTCAG+GGG - chr6_3:81126155-81126174 None:intergenic 35.0%
GTTAGTTACAGTAAGAGTCA+GGG - chr6_3:81126156-81126175 None:intergenic 35.0%
TGTTAGTTACAGTAAGAGTC+AGG - chr6_3:81126157-81126176 None:intergenic 35.0%
TTAGAGAGAGAAAGGTAAAG+TGG - chr6_3:81126180-81126199 None:intergenic 35.0%
AATCTCTTTCTCTCTCTCTA+GGG + chr6_3:81126205-81126224 Msa0960880:five_prime_UTR 35.0%
!! GATTTGAAGAGTACTTTGTG+GGG - chr6_3:81126265-81126284 None:intergenic 35.0%
GAAATGATTCGATACCTTAC+AGG - chr6_3:81126500-81126519 None:intergenic 35.0%
! GCATGTTGAAATTGATGGTT+TGG + chr6_3:81126646-81126665 Msa0960880:intron 35.0%
ACAGTGAGAGTGATAGTTTA+GGG - chr6_3:81126791-81126810 None:intergenic 35.0%
TTGAAGGACTCTCATATTGA+TGG - chr6_3:81127055-81127074 None:intergenic 35.0%
!!! TCACTCTCTCACCAATTTTT+TGG - chr6_3:81127162-81127181 None:intergenic 35.0%
!! TGCAATTCTAGGAACCTTTT+TGG + chr6_3:81127302-81127321 Msa0960880:intron 35.0%
!! TTATGAGGTATTGTCCTCTT+TGG + chr6_3:81127391-81127410 Msa0960880:intron 35.0%
!! TATGAGGTATTGTCCTCTTT+GGG + chr6_3:81127392-81127411 Msa0960880:intron 35.0%
! TTGATAAAAGACGCCTTGTT+GGG + chr6_3:81127439-81127458 Msa0960880:intron 35.0%
AATAAACACCCACATTGTCT+GGG - chr6_3:81127510-81127529 None:intergenic 35.0%
CAATGTGGGTGTTTATTGTA+AGG + chr6_3:81127513-81127532 Msa0960880:intron 35.0%
!! GCAAAGTTTGGATTAGTTTC+AGG - chr6_3:81127774-81127793 None:intergenic 35.0%
! TGATGATGTATTGGATGAAG+AGG + chr6_3:81127794-81127813 Msa0960880:intron 35.0%
TCTCAAATCAACTTTCACAC+AGG - chr6_3:81128003-81128022 None:intergenic 35.0%
CTCAATCATCAAATGTTCAC+AGG - chr6_3:81128039-81128058 None:intergenic 35.0%
TTGTTCATAACCATCACGAT+CGG - chr6_3:81128454-81128473 None:intergenic 35.0%
TCGTGATGGTTATGAACAAA+AGG + chr6_3:81128455-81128474 Msa0960880:CDS 35.0%
!!! GAACTGACTTAGTTTTGTAC+AGG + chr6_3:81128496-81128515 Msa0960880:CDS 35.0%
!!! GACTTAGTTTTGTACAGGTT+TGG + chr6_3:81128501-81128520 Msa0960880:intron 35.0%
ATGTAGCACCTATCAATCAA+TGG - chr6_3:81128632-81128651 None:intergenic 35.0%
ATTTACTTGTTCCCGTTTGA+AGG + chr6_3:81128675-81128694 Msa0960880:intron 35.0%
! TGACATCTAACTTGCATTCT+AGG + chr6_3:81128819-81128838 Msa0960880:intron 35.0%
TATATTGACCTTTAACCCCT+GGG + chr6_3:81128962-81128981 Msa0960880:intron 35.0%
ATCTGAACCATAAATACCCA+GGG - chr6_3:81128981-81129000 None:intergenic 35.0%
TATCTGAACCATAAATACCC+AGG - chr6_3:81128982-81129001 None:intergenic 35.0%
CGAATTTACAATCCACTCTA+GGG - chr6_3:81129222-81129241 None:intergenic 35.0%
TCGAATTTACAATCCACTCT+AGG - chr6_3:81129223-81129242 None:intergenic 35.0%
!! GAGTGGATTGTAAATTCGAA+AGG + chr6_3:81129224-81129243 Msa0960880:intron 35.0%
! GATTGTGTTTGAAGTCTATC+AGG + chr6_3:81129286-81129305 Msa0960880:intron 35.0%
GGCAAATTAGTTCATTGATC+AGG + chr6_3:81129438-81129457 Msa0960880:intron 35.0%
! GTCTTGCTAAAGTACTAAGA+GGG + chr6_3:81129571-81129590 Msa0960880:intron 35.0%
ACTGAGAAGTTCACATCAAT+TGG + chr6_3:81129753-81129772 Msa0960880:intron 35.0%
!! TGTTTCAAGTTAGTGTTTGG+TGG + chr6_3:81129935-81129954 Msa0960880:intron 35.0%
AATGCACAATAAGTAGTCAG+TGG + chr6_3:81129987-81130006 Msa0960880:intron 35.0%
!!! TGTTTTAAGTTAGCGTTTGG+TGG + chr6_3:81130096-81130115 Msa0960880:intron 35.0%
AATGCACAATAAGTAGTCAG+TGG + chr6_3:81129987-81130006 Msa0960880:intron 35.0%
!!! ATTTTGGAACCCAGCAAAAA+TGG - chr6_3:81130411-81130430 None:intergenic 35.0%
! ATTTTACAGGAGAATTGCTG+AGG + chr6_3:81130429-81130448 Msa0960880:intron 35.0%
! TCAAGTTTTCCATCTTCACT+TGG - chr6_3:81130586-81130605 None:intergenic 35.0%
AAGTGAAGATGGAAAACTTG+AGG + chr6_3:81130585-81130604 Msa0960880:CDS 35.0%
! ATAGTTTTCTCTTCTGCATC+AGG - chr6_3:81130811-81130830 None:intergenic 35.0%
TTGTTTCGTCTTCCAAAGTT+TGG - chr6_3:81130837-81130856 None:intergenic 35.0%
CTGTAATGTCTCGATATCAA+AGG - chr6_3:81130992-81131011 None:intergenic 35.0%
ATGATTCTCAATGATGCTGA+CGG - chr6_3:81131043-81131062 None:intergenic 35.0%
! GAACTCAGTTTAGGACAAAA+TGG - chr6_3:81131239-81131258 None:intergenic 35.0%
TCCAAGGGAAGAAATTCATA+TGG + chr6_3:81131274-81131293 Msa0960880:three_prime_UTR 35.0%
!! CTGATTGGTGTTGTATATAG+TGG + chr6_3:81131355-81131374 Msa0960880:three_prime_UTR 35.0%
!! GGTGTTGTATATAGTGGATT+TGG + chr6_3:81131361-81131380 Msa0960880:three_prime_UTR 35.0%
! AGATTTTACTTTGTCTGTCG+AGG - chr6_3:81131675-81131694 None:intergenic 35.0%
AAAGTCTCATCCCATTAAGT+GGG - chr6_3:81131716-81131735 None:intergenic 35.0%
TAAAGTCTCATCCCATTAAG+TGG - chr6_3:81131717-81131736 None:intergenic 35.0%
CTAGAGAGAGAGAAAGAGAT+TGG - chr6_3:81126206-81126225 None:intergenic 40.0%
CAATCTCTTTCTCTCTCTCT+AGG + chr6_3:81126204-81126223 Msa0960880:five_prime_UTR 40.0%
! AGAGTACTTTGTGGGGAAAT+GGG - chr6_3:81126258-81126277 None:intergenic 40.0%
!! AAGAGTACTTTGTGGGGAAA+TGG - chr6_3:81126259-81126278 None:intergenic 40.0%
AATATCCAAGCAAACTCCAC+AGG - chr6_3:81126741-81126760 None:intergenic 40.0%
CACAGTGAGAGTGATAGTTT+AGG - chr6_3:81126792-81126811 None:intergenic 40.0%
!! GCACTGACACTTTTGATTGA+AGG + chr6_3:81126814-81126833 Msa0960880:intron 40.0%
GTTGTCAGATAAGACACACA+CGG - chr6_3:81126847-81126866 None:intergenic 40.0%
GTATGCTACACCATGTTATG+AGG + chr6_3:81127376-81127395 Msa0960880:intron 40.0%
GAGGACAATACCTCATAACA+TGG - chr6_3:81127389-81127408 None:intergenic 40.0%
TTATCAAGGACAAAACCGTG+AGG - chr6_3:81127426-81127445 None:intergenic 40.0%
!! CAACAAGGCGTCTTTTATCA+AGG - chr6_3:81127440-81127459 None:intergenic 40.0%
CTTGATAAAAGACGCCTTGT+TGG + chr6_3:81127438-81127457 Msa0960880:intron 40.0%
CAATAAACACCCACATTGTC+TGG - chr6_3:81127511-81127530 None:intergenic 40.0%
ATTGTCTTGACAAACAGCCA+TGG + chr6_3:81128095-81128114 Msa0960880:intron 40.0%
! AATGGGAGGAGATTTTCTGT+TGG + chr6_3:81128249-81128268 Msa0960880:CDS 40.0%
! GCAGTTTCTCTCTCAGATTT+TGG + chr6_3:81128371-81128390 Msa0960880:CDS 40.0%
CCAAGATTCTACCTTCAAAC+GGG - chr6_3:81128689-81128708 None:intergenic 40.0%
GCCAAGATTCTACCTTCAAA+CGG - chr6_3:81128690-81128709 None:intergenic 40.0%
CTGATAGGAGAGACACTAAT+AGG - chr6_3:81128722-81128741 None:intergenic 40.0%
ATTAGTGTCTCTCCTATCAG+TGG + chr6_3:81128722-81128741 Msa0960880:intron 40.0%
CTATATTGACCTTTAACCCC+TGG + chr6_3:81128961-81128980 Msa0960880:intron 40.0%
CATAAATACCCAGGGGTTAA+AGG - chr6_3:81128973-81128992 None:intergenic 40.0%
CTTTAACCCCTGGGTATTTA+TGG + chr6_3:81128971-81128990 Msa0960880:intron 40.0%
TCTGAACCATAAATACCCAG+GGG - chr6_3:81128980-81128999 None:intergenic 40.0%
GTACTTTAGCAAGACCCATT+AGG - chr6_3:81129566-81129585 None:intergenic 40.0%
! GGTCTTGCTAAAGTACTAAG+AGG + chr6_3:81129570-81129589 Msa0960880:intron 40.0%
! GCTGGGTTCCAAAATTTTAC+AGG + chr6_3:81130416-81130435 Msa0960880:intron 40.0%
!! GGAGGGTACTAAAGAAACAT+TGG - chr6_3:81130527-81130546 None:intergenic 40.0%
CATGAATCAACTTGACCAGA+AGG - chr6_3:81130562-81130581 None:intergenic 40.0%
!! CTTCTGGTCAAGTTGATTCA+TGG + chr6_3:81130560-81130579 Msa0960880:CDS 40.0%
! CAGATTTTGAATCCCCTGAT+CGG - chr6_3:81130672-81130691 None:intergenic 40.0%
TAGCTCAGATCAGCAAACTA+AGG + chr6_3:81130692-81130711 Msa0960880:CDS 40.0%
AGCTCAGATCAGCAAACTAA+GGG + chr6_3:81130693-81130712 Msa0960880:CDS 40.0%
TATGCTGCGTCAGTAATGTA+TGG + chr6_3:81130727-81130746 Msa0960880:CDS 40.0%
!! TTCTGAAGCGTGTTGTTCAA+CGG + chr6_3:81130755-81130774 Msa0960880:CDS 40.0%
AGATAACAGTGTCTAGGTTG+CGG + chr6_3:81130953-81130972 Msa0960880:CDS 40.0%
TGCAACGATTAGATCCAAAG+AGG + chr6_3:81131017-81131036 Msa0960880:CDS 40.0%
!! TTGAGAGCTATGTTGACTCA+AGG + chr6_3:81131211-81131230 Msa0960880:CDS 40.0%
AATTTCTTCCCTTGGATGCA+TGG - chr6_3:81131270-81131289 None:intergenic 40.0%
GCCATATGAATTTCTTCCCT+TGG - chr6_3:81131278-81131297 None:intergenic 40.0%
GGGAAGAAATTCATATGGCT+TGG + chr6_3:81131279-81131298 Msa0960880:three_prime_UTR 40.0%
! TTTTACACGGACTTTCCAGA+AGG + chr6_3:81131561-81131580 Msa0960880:three_prime_UTR 40.0%
TCAAATAAAGAGCGACCTTC+TGG - chr6_3:81131579-81131598 None:intergenic 40.0%
! GAAGGTCGCTCTTTATTTGA+TGG + chr6_3:81131579-81131598 Msa0960880:three_prime_UTR 40.0%
!! GTAGCCTTGTTATACATAGC+CGG + chr6_3:81131611-81131630 Msa0960880:intron 40.0%
! CTCCTTATACCCAGACTTTT+GGG - chr6_3:81131638-81131657 None:intergenic 40.0%
! TCTCCTTATACCCAGACTTT+TGG - chr6_3:81131639-81131658 None:intergenic 40.0%
AAAAGTCTGGGTATAAGGAG+AGG + chr6_3:81131638-81131657 Msa0960880:intron 40.0%
AAAGTCTGGGTATAAGGAGA+GGG + chr6_3:81131639-81131658 Msa0960880:intron 40.0%
! GTAGCCTTGCTATACATTGT+CGG + chr6_3:81131754-81131773 Msa0960880:three_prime_UTR 40.0%
CTTAATCCCACCAAGTGAAT+CGG - chr6_3:81131852-81131871 None:intergenic 40.0%
!! ACTTGGTGGGATTAAGCTTT+TGG + chr6_3:81131856-81131875 Msa0960880:three_prime_UTR 40.0%
ACGCACGGCGTTAAACTTAA+CGG + chr6_3:81126381-81126400 Msa0960880:CDS 45.0%
ATTGGAACGGAAAAGCGAGA+CGG - chr6_3:81126467-81126486 None:intergenic 45.0%
AGGACAGCGGTAAATTGGAA+CGG - chr6_3:81126480-81126499 None:intergenic 45.0%
CTTACAGGACAGCGGTAAAT+TGG - chr6_3:81126485-81126504 None:intergenic 45.0%
CAATTTACCGCTGTCCTGTA+AGG + chr6_3:81126483-81126502 Msa0960880:CDS 45.0%
TTCGATACCTTACAGGACAG+CGG - chr6_3:81126493-81126512 None:intergenic 45.0%
! TTGATCCTGTGGAGTTTGCT+TGG + chr6_3:81126733-81126752 Msa0960880:intron 45.0%
TATCTGACAACGACACGAGA+CGG + chr6_3:81126856-81126875 Msa0960880:intron 45.0%
TGGTGAGAGAGTGATGCTTT+AGG + chr6_3:81127168-81127187 Msa0960880:intron 45.0%
GGTGAGAGAGTGATGCTTTA+GGG + chr6_3:81127169-81127188 Msa0960880:intron 45.0%
CCTCAATTCCCAGACAATGT+GGG + chr6_3:81127499-81127518 Msa0960880:intron 45.0%
TCTGTACCTAACTCCAAGCA+AGG + chr6_3:81128225-81128244 Msa0960880:CDS 45.0%
CTAACTCCAAGCAAGGCAAT+GGG + chr6_3:81128232-81128251 Msa0960880:CDS 45.0%
TGGAAATAGAAGGGGTCTTG+TGG + chr6_3:81128269-81128288 Msa0960880:CDS 45.0%
TCATCATCTGCAGACTCATC+TGG + chr6_3:81128303-81128322 Msa0960880:CDS 45.0%
TAAAGCTCGAGTCTCCAGTA+GGG + chr6_3:81128349-81128368 Msa0960880:CDS 45.0%
CAATTCCAAACCGATCGTGA+TGG + chr6_3:81128441-81128460 Msa0960880:CDS 45.0%
CATAACCATCACGATCGGTT+TGG - chr6_3:81128449-81128468 None:intergenic 45.0%
AAGGAAAAGCCTTCTGCTTC+AGG + chr6_3:81128474-81128493 Msa0960880:CDS 45.0%
AAGTCAGTTCCTGAAGCAGA+AGG - chr6_3:81128486-81128505 None:intergenic 45.0%
CCCGTTTGAAGGTAGAATCT+TGG + chr6_3:81128686-81128705 Msa0960880:intron 45.0%
AAGTGCACATAGCCACTGAT+AGG - chr6_3:81128737-81128756 None:intergenic 45.0%
!!! AGGTGCTGACCATTTTTGCT+GGG + chr6_3:81130399-81130418 Msa0960880:intron 45.0%
CAGGAGAATTGCTGAGGTAA+AGG + chr6_3:81130435-81130454 Msa0960880:intron 45.0%
TCAACTTGACCAGAAGGATG+TGG - chr6_3:81130556-81130575 None:intergenic 45.0%
GATTCATGGCCAAGTGAAGA+TGG + chr6_3:81130574-81130593 Msa0960880:CDS 45.0%
GTGGCTTTCGATCAACTCAT+AGG - chr6_3:81130629-81130648 None:intergenic 45.0%
!! TGAGTTGATCGAAAGCCACT+TGG + chr6_3:81130630-81130649 Msa0960880:CDS 45.0%
CAGATCAGCAAACTAAGGGT+AGG + chr6_3:81130697-81130716 Msa0960880:CDS 45.0%
GAAGACGAAACAAGAATCGC+TGG + chr6_3:81130844-81130863 Msa0960880:CDS 45.0%
GGTGGGACATAACTTGAGAA+GGG - chr6_3:81130879-81130898 None:intergenic 45.0%
GTCAGGAGATAACAGTGTCT+AGG + chr6_3:81130947-81130966 Msa0960880:CDS 45.0%
GAGTGAGCAGAACTCAGTTT+AGG - chr6_3:81131248-81131267 None:intergenic 45.0%
!!! TATACCCAGACTTTTGGGAC+CGG - chr6_3:81131633-81131652 None:intergenic 45.0%
GTCCCAAAAGTCTGGGTATA+AGG + chr6_3:81131633-81131652 Msa0960880:intron 45.0%
TCTCTAGCTGACCCACTTAA+TGG + chr6_3:81131702-81131721 Msa0960880:intron 45.0%
CTCTAGCTGACCCACTTAAT+GGG + chr6_3:81131703-81131722 Msa0960880:intron 45.0%
! AATCTCCTAGCCGATTCACT+TGG + chr6_3:81131839-81131858 Msa0960880:three_prime_UTR 45.0%
GAAAATGGAAGCGACACGCA+CGG + chr6_3:81126366-81126385 Msa0960880:exon 50.0%
CTGTTCTTCCGTCATCTGCA+CGG + chr6_3:81126407-81126426 Msa0960880:CDS 50.0%
GCGAACATTGACGGCTTACA+CGG - chr6_3:81126433-81126452 None:intergenic 50.0%
TGTAAGCCGTCAATGTTCGC+CGG + chr6_3:81126433-81126452 Msa0960880:CDS 50.0%
GATCTTCCGGCGAACATTGA+CGG - chr6_3:81126442-81126461 None:intergenic 50.0%
AAGCGAGACGGTAGATCTTC+CGG - chr6_3:81126455-81126474 None:intergenic 50.0%
! TGAGGTGCTTACACCCAAAG+AGG - chr6_3:81127408-81127427 None:intergenic 50.0%
CTTTGGGTGTAAGCACCTCA+CGG + chr6_3:81127408-81127427 Msa0960880:intron 50.0%
! AAAGACGCCTTGTTGGGTTG+AGG + chr6_3:81127445-81127464 Msa0960880:intron 50.0%
!! CTTGTTGGGTTGAGGAGCAT+GGG + chr6_3:81127453-81127472 Msa0960880:intron 50.0%
GCCTCAATTCCCAGACAATG+TGG + chr6_3:81127498-81127517 Msa0960880:intron 50.0%
CCCACATTGTCTGGGAATTG+AGG - chr6_3:81127502-81127521 None:intergenic 50.0%
! TGGAAGCACAGTGAACACCA+TGG - chr6_3:81128115-81128134 None:intergenic 50.0%
CCATTGCCTTGCTTGGAGTT+AGG - chr6_3:81128234-81128253 None:intergenic 50.0%
CCTAACTCCAAGCAAGGCAA+TGG + chr6_3:81128231-81128250 Msa0960880:CDS 50.0%
! TGGAGACTCGAGCTTTAGTG+GGG - chr6_3:81128346-81128365 None:intergenic 50.0%
! CTGGAGACTCGAGCTTTAGT+GGG - chr6_3:81128347-81128366 None:intergenic 50.0%
! ACTGGAGACTCGAGCTTTAG+TGG - chr6_3:81128348-81128367 None:intergenic 50.0%
CTAAAGCTCGAGTCTCCAGT+AGG + chr6_3:81128348-81128367 Msa0960880:CDS 50.0%
TGAGAGAGAAACTGCCCTAC+TGG - chr6_3:81128366-81128385 None:intergenic 50.0%
CTGCAGCAGACATGAGATGT+GGG - chr6_3:81128404-81128423 None:intergenic 50.0%
ACTGCAGCAGACATGAGATG+TGG - chr6_3:81128405-81128424 None:intergenic 50.0%
AGGGCTATATGTCCCTAGAG+TGG + chr6_3:81129207-81129226 Msa0960880:intron 50.0%
!!! GAGGTGCTGACCATTTTTGC+TGG + chr6_3:81130398-81130417 Msa0960880:intron 50.0%
CTGAGGTAAAGGCGAAAGAG+AGG + chr6_3:81130446-81130465 Msa0960880:CDS 50.0%
GAAGGATGTGGCGTTATGGA+GGG - chr6_3:81130544-81130563 None:intergenic 50.0%
AGAAGGATGTGGCGTTATGG+AGG - chr6_3:81130545-81130564 None:intergenic 50.0%
TCCATAACGCCACATCCTTC+TGG + chr6_3:81130544-81130563 Msa0960880:CDS 50.0%
ACCAGAAGGATGTGGCGTTA+TGG - chr6_3:81130548-81130567 None:intergenic 50.0%
!! AGCCACTTGGCTCTACTTCT+CGG + chr6_3:81130643-81130662 Msa0960880:CDS 50.0%
TACTTCTCGGCAACCGATCA+GGG + chr6_3:81130656-81130675 Msa0960880:CDS 50.0%
CAGCAAACTAAGGGTAGGAC+AGG + chr6_3:81130702-81130721 Msa0960880:CDS 50.0%
TGTTGTTCAACGGTTCCAGC+TGG + chr6_3:81130765-81130784 Msa0960880:CDS 50.0%
GGGTGGGACATAACTTGAGA+AGG - chr6_3:81130880-81130899 None:intergenic 50.0%
CTTGAGAGTGGCATCAGTTC+AGG + chr6_3:81130916-81130935 Msa0960880:CDS 50.0%
GGCATCAGTTCAGGTGCAAA+TGG + chr6_3:81130925-81130944 Msa0960880:CDS 50.0%
CAGTTCAGGTGCAAATGGTC+AGG + chr6_3:81130930-81130949 Msa0960880:CDS 50.0%
AATGATGCTGACGGCCTCTT+TGG - chr6_3:81131034-81131053 None:intergenic 50.0%
TGCTCACTCCATGCATCCAA+GGG + chr6_3:81131259-81131278 Msa0960880:three_prime_UTR 50.0%
GGGACCGGCTATGTATAACA+AGG - chr6_3:81131618-81131637 None:intergenic 50.0%
ATAGCCGGTCCCAAAAGTCT+GGG + chr6_3:81131626-81131645 Msa0960880:intron 50.0%
GGGACCGACAATGTATAGCA+AGG - chr6_3:81131761-81131780 None:intergenic 50.0%
CATTGTCGGTCCCAAACCAA+AGG + chr6_3:81131768-81131787 Msa0960880:three_prime_UTR 50.0%
! CCTCTCCTCTCCTTTGGTTT+GGG - chr6_3:81131781-81131800 None:intergenic 50.0%
CCAAACCAAAGGAGAGGAGA+GGG + chr6_3:81131779-81131798 Msa0960880:three_prime_UTR 50.0%
AACAACCCTCTCCTCTCCTT+TGG - chr6_3:81131787-81131806 None:intergenic 50.0%
! TCCTAGCCGATTCACTTGGT+GGG + chr6_3:81131843-81131862 Msa0960880:three_prime_UTR 50.0%
TTACACGGCCGTGCAGATGA+CGG - chr6_3:81126418-81126437 None:intergenic 55.0%
CCATGCTCCTCAACCCAACA+AGG - chr6_3:81127455-81127474 None:intergenic 55.0%
!! CCTTGTTGGGTTGAGGAGCA+TGG + chr6_3:81127452-81127471 Msa0960880:intron 55.0%
ACTCCAAGCAAGGCAATGGG+AGG + chr6_3:81128235-81128254 Msa0960880:CDS 55.0%
TCTCCTCCCATTGCCTTGCT+TGG - chr6_3:81128241-81128260 None:intergenic 55.0%
TGCCGAGAAGTAGAGCCAAG+TGG - chr6_3:81130648-81130667 None:intergenic 55.0%
CTACTTCTCGGCAACCGATC+AGG + chr6_3:81130655-81130674 Msa0960880:CDS 55.0%
ACTTCTCGGCAACCGATCAG+GGG + chr6_3:81130657-81130676 Msa0960880:CDS 55.0%
TCAAGCCAAGCAGGGACTTC+GGG - chr6_3:81130901-81130920 None:intergenic 55.0%
CTCAAGCCAAGCAGGGACTT+CGG - chr6_3:81130902-81130921 None:intergenic 55.0%
TGCCACTCTCAAGCCAAGCA+GGG - chr6_3:81130909-81130928 None:intergenic 55.0%
ATGCCACTCTCAAGCCAAGC+AGG - chr6_3:81130910-81130929 None:intergenic 55.0%
CTGCTCACTCCATGCATCCA+AGG + chr6_3:81131258-81131277 Msa0960880:three_prime_UTR 55.0%
CATAGCCGGTCCCAAAAGTC+TGG + chr6_3:81131625-81131644 Msa0960880:intron 55.0%
TCGGTCCCAAACCAAAGGAG+AGG + chr6_3:81131773-81131792 Msa0960880:three_prime_UTR 55.0%
CCCAAACCAAAGGAGAGGAG+AGG + chr6_3:81131778-81131797 Msa0960880:three_prime_UTR 55.0%
CCCTCTCCTCTCCTTTGGTT+TGG - chr6_3:81131782-81131801 None:intergenic 55.0%
! CTCCTAGCCGATTCACTTGG+TGG + chr6_3:81131842-81131861 Msa0960880:three_prime_UTR 55.0%
TCCCACCAAGTGAATCGGCT+AGG - chr6_3:81131847-81131866 None:intergenic 55.0%
CAAGCCAAGCAGGGACTTCG+GGG - chr6_3:81130900-81130919 None:intergenic 60.0%
! GTCCCTGCTTGGCTTGAGAG+TGG + chr6_3:81130904-81130923 Msa0960880:CDS 60.0%
CCAAGCAGGGACTTCGGGGT+GGG - chr6_3:81130896-81130915 None:intergenic 65.0%
CCCACCCCGAAGTCCCTGCT+TGG + chr6_3:81130893-81130912 Msa0960880:CDS 70.0%
GCCAAGCAGGGACTTCGGGG+TGG - chr6_3:81130897-81130916 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 81126124 81131927 81126124 ID=Msa0960880;Name=Msa0960880
chr6_3 mRNA 81126124 81131927 81126124 ID=Msa0960880-mRNA-1;Parent=Msa0960880;Name=Msa0960880-mRNA-1;_AED=0.03;_eAED=0.03;_QI=153|1|1|1|0.5|0.2|5|545|417
chr6_3 exon 81126124 81126270 81126124 ID=Msa0960880-mRNA-1:exon:14549;Parent=Msa0960880-mRNA-1
chr6_3 exon 81126364 81126504 81126364 ID=Msa0960880-mRNA-1:exon:14550;Parent=Msa0960880-mRNA-1
chr6_3 exon 81128216 81128517 81128216 ID=Msa0960880-mRNA-1:exon:14551;Parent=Msa0960880-mRNA-1
chr6_3 exon 81130438 81131609 81130438 ID=Msa0960880-mRNA-1:exon:14552;Parent=Msa0960880-mRNA-1
chr6_3 exon 81131738 81131927 81131738 ID=Msa0960880-mRNA-1:exon:14553;Parent=Msa0960880-mRNA-1
chr6_3 five_prime_UTR 81126124 81126270 81126124 ID=Msa0960880-mRNA-1:five_prime_utr;Parent=Msa0960880-mRNA-1
chr6_3 five_prime_UTR 81126364 81126369 81126364 ID=Msa0960880-mRNA-1:five_prime_utr;Parent=Msa0960880-mRNA-1
chr6_3 CDS 81126370 81126504 81126370 ID=Msa0960880-mRNA-1:cds;Parent=Msa0960880-mRNA-1
chr6_3 CDS 81128216 81128517 81128216 ID=Msa0960880-mRNA-1:cds;Parent=Msa0960880-mRNA-1
chr6_3 CDS 81130438 81131254 81130438 ID=Msa0960880-mRNA-1:cds;Parent=Msa0960880-mRNA-1
chr6_3 three_prime_UTR 81131255 81131609 81131255 ID=Msa0960880-mRNA-1:three_prime_utr;Parent=Msa0960880-mRNA-1
chr6_3 three_prime_UTR 81131738 81131927 81131738 ID=Msa0960880-mRNA-1:three_prime_utr;Parent=Msa0960880-mRNA-1
Gene Sequence

>Msa0960880

ATGGAAGCGACACGCACGGCGTTAAACTTAACGGCAACTGTTCTTCCGTCATCTGCACGGCCGTGTAAGCCGTCAATGTTCGCCGGAAGATCTACCGTCTCGCTTTTCCGTTCCAATTTACCGCTGTCCTGTAAGCTGCACACTTCTGTACCTAACTCCAAGCAAGGCAATGGGAGGAGATTTTCTGTTGGAAATAGAAGGGGTCTTGTGGTTAGAGCTGCATCATCATCTGCAGACTCATCTGGATCAAGTTCTAATATTGCCCCACTAAAGCTCGAGTCTCCAGTAGGGCAGTTTCTCTCTCAGATTTTGGTTAGTCACCCACATCTCATGTCTGCTGCAGTAGAGCGACAGCTAGAGCAATTCCAAACCGATCGTGATGGTTATGAACAAAAGGAAAAGCCTTCTGCTTCAGGAACTGACTTAGTTTTGTACAGGAGAATTGCTGAGGTAAAGGCGAAAGAGAGGAGAAAAGCTATAGAAGAAATATTGTACACATTGGTAGTGCAGAAATTTATGGATGCCAATGTTTCTTTAGTACCCTCCATAACGCCACATCCTTCTGGTCAAGTTGATTCATGGCCAAGTGAAGATGGAAAACTTGAGGATCTTCACTCGCGTGAAGCCTATGAGTTGATCGAAAGCCACTTGGCTCTACTTCTCGGCAACCGATCAGGGGATTCAAAATCTGTAGCTCAGATCAGCAAACTAAGGGTAGGACAGGTCTATGCTGCGTCAGTAATGTATGGATACTTTCTGAAGCGTGTTGTTCAACGGTTCCAGCTGGAAAAGACAATAAAAAATCTACCTGATGCAGAAGAGAAAACTATTAGCCAAACTTTGGAAGACGAAACAAGAATCGCTGGTCTTGAGTTCCCTTCTCAAGTTATGTCCCACCCCGAAGTCCCTGCTTGGCTTGAGAGTGGCATCAGTTCAGGTGCAAATGGTCAGGAGATAACAGTGTCTAGGTTGCGGTCCTATATGATGTCCTTTGATATCGAGACATTACAGAGATATGCAACGATTAGATCCAAAGAGGCCGTCAGCATCATTGAGAATCATACTGAAGCATTGTTTGGTAGACCAGAAATTGTTATAACACCAGAGGGGAAAATCAATTCTTCAAAAGATGAAATCATCAAAATTAGCATTGGTGGTTTGAAAAGACTTGTTTTAGAAGCTGTTACTTTTGGTTCTTTTCTTTGGGATGTTGAGAGCTATGTTGACTCAAGGTACCATTTTGTCCTAAACTGA
Protein sequence

>Msa0960880

MEATRTALNLTATVLPSSARPCKPSMFAGRSTVSLFRSNLPLSCKLHTSVPNSKQGNGRRFSVGNRRGLVVRAASSSADSSGSSSNIAPLKLESPVGQFLSQILVSHPHLMSAAVERQLEQFQTDRDGYEQKEKPSASGTDLVLYRRIAEVKAKERRKAIEEILYTLVVQKFMDANVSLVPSITPHPSGQVDSWPSEDGKLEDLHSREAYELIESHLALLLGNRSGDSKSVAQISKLRVGQVYAASVMYGYFLKRVVQRFQLEKTIKNLPDAEEKTISQTLEDETRIAGLEFPSQVMSHPEVPAWLESGISSGANGQEITVSRLRSYMMSFDIETLQRYATIRSKEAVSIIENHTEALFGRPEIVITPEGKINSSKDEIIKISIGGLKRLVLEAVTFGSFLWDVESYVDSRYHFVLN*