AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0299530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0299530 MtrunA17_Chr2g0323981 98.413 378 6 0 1 378 1 378 0.0 778
Msa0299530 MtrunA17_Chr1g0171131 49.867 377 164 5 6 368 12 377 1.39e-132 384
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0299530 AT2G20860.2 81.283 374 65 2 2 375 1 369 0.0 593
Msa0299530 AT2G20860.3 81.283 374 65 2 2 375 1 369 0.0 593
Msa0299530 AT2G20860.1 81.283 374 65 2 2 375 1 369 0.0 593
Msa0299530 AT5G08415.1 51.302 384 153 7 15 368 6 385 4.75e-124 363

Find 141 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTCATCCATTTCGGTTT+TGG 0.218112 2_3:-54486026 None:intergenic
GACCAACACTCTCCCATATT+AGG 0.242683 2_3:-54486137 None:intergenic
TCTCCATTGTCTTCACAATT+TGG 0.254997 2_3:-54488974 None:intergenic
CCAACAACCAGTCACCAATA+TGG 0.299270 2_3:-54485702 None:intergenic
ATCGATTCCTTCATCCATTT+CGG 0.312761 2_3:-54486032 None:intergenic
ACTGCTACTATTATGATTCT+TGG 0.317053 2_3:+54486182 Msa0299530:CDS
GCCACATTAGTGGGCTCATC+AGG 0.324211 2_3:-54488034 None:intergenic
AGAGGCGAAGTGCCCTAATA+TGG 0.325795 2_3:+54486124 Msa0299530:CDS
GTAGAGAAGGTTTCCAAATC+AGG 0.347575 2_3:+54488777 Msa0299530:CDS
AGCAATTGCATCGTGGGGTT+TGG 0.354978 2_3:+54488060 Msa0299530:CDS
GGCTCATCAGGGTCAGGTGG+TGG 0.361593 2_3:-54488022 None:intergenic
GCCCATTTATAGGCCCATAT+TGG 0.367111 2_3:+54485688 None:intergenic
GTACGCGTTGTTCGATTTCA+AGG 0.375043 2_3:-54485970 None:intergenic
AAAGAGAGCAAAATAAGTTC+AGG 0.388769 2_3:-54490252 None:intergenic
TCAAGGAAATGAAGTCTGAT+AGG 0.398886 2_3:-54485953 None:intergenic
TCATCAGGGTCAGGTGGTGG+AGG 0.400338 2_3:-54488019 None:intergenic
TGATACTGGCATATGGCGTT+TGG 0.402301 2_3:-54489051 None:intergenic
GGTGAGATTCTGTGGGAATT+CGG 0.406088 2_3:-54485895 None:intergenic
ACCAAGACTTCAATAATGTT+AGG 0.408729 2_3:+54488933 Msa0299530:CDS
TTTGAGAAGTATCAGACTAT+TGG 0.410051 2_3:+54489095 Msa0299530:CDS
ACCTAACATTATTGAAGTCT+TGG 0.413462 2_3:-54488934 None:intergenic
TGGATGAAGGAATCGATTCC+TGG 0.415772 2_3:+54486038 Msa0299530:CDS
ATGGAGAAGGTGAGAGCAGC+AGG 0.415946 2_3:+54488990 Msa0299530:CDS
TCAGCATTTCCTCGAAAGTC+GGG 0.417079 2_3:-54488750 None:intergenic
AAGGACATCTAATCCTGATT+TGG 0.417297 2_3:-54488790 None:intergenic
ATTGTCTTCACAATTTGGTC+AGG 0.418891 2_3:-54488969 None:intergenic
ATACTTGTACTCGAGGTTGC+AGG 0.421929 2_3:+54486207 Msa0299530:CDS
ACCAACACTCTCCCATATTA+GGG 0.424555 2_3:-54486136 None:intergenic
ATCTTTGGATGTTCTAATGA+TGG 0.429607 2_3:+54488881 Msa0299530:CDS
TCCCGCAGGGGCATAATCCT+TGG 0.435729 2_3:-54488904 None:intergenic
ATCCGCTTCCAAAACCGAAA+TGG 0.438228 2_3:+54486018 Msa0299530:CDS
GGTGTAATATATTCTGATAC+TGG 0.448209 2_3:-54489065 None:intergenic
TGCAAGACGAGCTCGGAGTT+CGG 0.450209 2_3:-54485916 None:intergenic
CTTCAATAATGTTAGGTTGT+GGG 0.451604 2_3:+54488940 Msa0299530:CDS
CAACAACCAGTCACCAATAT+GGG 0.454465 2_3:-54485701 None:intergenic
TCAGACTATTGGCATGGAAA+TGG 0.455998 2_3:+54489106 Msa0299530:CDS
GGATTTCGATATGTGGCATC+CGG 0.456753 2_3:+54489749 Msa0299530:CDS
ATCCATGATTAATTCAGATC+GGG 0.456945 2_3:+54489817 Msa0299530:CDS
AAATGACCGCTCCCTTGATC+AGG 0.466961 2_3:-54488121 None:intergenic
TATATTCTGATACTGGCATA+TGG 0.475977 2_3:-54489058 None:intergenic
TACTGGCATATGGCGTTTGG+AGG 0.478307 2_3:-54489048 None:intergenic
GGTGTTGATGTGATGACATT+TGG 0.481557 2_3:+54489011 Msa0299530:CDS
CCATATTGGTGACTGGTTGT+TGG 0.481584 2_3:+54485702 Msa0299530:five_prime_UTR
ACTTCAATAATGTTAGGTTG+TGG 0.481662 2_3:+54488939 Msa0299530:CDS
GAAGATAGATAGAGAGAGAG+AGG 0.482682 2_3:-54485738 None:intergenic
TTTGCAATGTTAAGACATCA+AGG 0.482840 2_3:+54487993 Msa0299530:CDS
TGGCATCCGGGCCCATGGTA+AGG 0.484495 2_3:+54489762 Msa0299530:CDS
TGTTGGTCTGGTGGTGAAAC+GGG 0.486925 2_3:+54486152 Msa0299530:CDS
GGCTGAAGCAATTGCATCGT+GGG 0.490274 2_3:+54488054 Msa0299530:CDS
CGTGATGATTTACCTGATCA+AGG 0.493451 2_3:+54488109 Msa0299530:CDS
TTCAATAATGTTAGGTTGTG+GGG 0.495715 2_3:+54488941 Msa0299530:CDS
AAATGAAGTCTGATAGGGAC+GGG 0.497026 2_3:-54485947 None:intergenic
GCAACAGTCCCCGACTTTCG+AGG 0.501770 2_3:+54488741 Msa0299530:intron
TGGTGACTGGTTGTTGGCGT+TGG 0.506366 2_3:+54485708 Msa0299530:five_prime_UTR
ATTAAGATGGTATTAATGAG+TGG 0.510060 2_3:+54490176 Msa0299530:three_prime_UTR
AGCCCGATCTGAATTAATCA+TGG 0.510455 2_3:-54489819 None:intergenic
TATAGGCCCATATTGGTGAC+TGG 0.510773 2_3:+54485695 None:intergenic
GGATGTTCTAATGATGGCCA+AGG 0.512226 2_3:+54488887 Msa0299530:CDS
AATCCATGATTAATTCAGAT+CGG 0.512241 2_3:+54489816 Msa0299530:CDS
TACGGTGGTTGTTGTGGTGG+CGG 0.517577 2_3:-54485865 None:intergenic
CGGAGTTCGGTGAGATTCTG+TGG 0.518861 2_3:-54485903 None:intergenic
CATGTAATCTATCATTAAGA+TGG 0.518940 2_3:+54490163 Msa0299530:three_prime_UTR
AATTGCTTCAGCCACATTAG+TGG 0.519729 2_3:-54488044 None:intergenic
AACTCCGAGCTCGTCTTGCA+AGG 0.520430 2_3:+54485919 Msa0299530:CDS
GCCAAGGATTATGCCCCTGC+GGG 0.523274 2_3:+54488903 Msa0299530:CDS
ATCGTGGGGTTTGGATTATG+TGG 0.523491 2_3:+54488069 Msa0299530:CDS
AAGAGAGCAAAATAAGTTCA+GGG 0.524262 2_3:-54490251 None:intergenic
GGTGGTTGTTGTGGTGGCGG+TGG 0.524374 2_3:-54485862 None:intergenic
TCCAAAACCGAAATGGATGA+AGG 0.524845 2_3:+54486025 Msa0299530:CDS
GTCTTGGTGAGGGTTCCCGC+AGG 0.527483 2_3:-54488918 None:intergenic
GAGGCGAAGTGCCCTAATAT+GGG 0.528184 2_3:+54486125 Msa0299530:CDS
TGATACTTCTCAAAGGCCTC+AGG 0.528435 2_3:-54489086 None:intergenic
GTGTTGGTCTGGTGGTGAAA+CGG 0.530493 2_3:+54486151 Msa0299530:CDS
CTTGGTGATACTTGTACTCG+AGG 0.530963 2_3:+54486200 Msa0299530:CDS
CTCAGCATTTCCTCGAAAGT+CGG 0.531294 2_3:-54488751 None:intergenic
AATATGGGAGAGTGTTGGTC+TGG 0.533648 2_3:+54486140 Msa0299530:CDS
CATGGTAAGGTCATCATACA+AGG 0.536106 2_3:+54489775 Msa0299530:CDS
AGAGCTACAGAGTGCTGTGC+GGG 0.536462 2_3:+54488836 Msa0299530:CDS
ATTGCTTCAGCCACATTAGT+GGG 0.538011 2_3:-54488043 None:intergenic
AAATGCTGAGTGTGTAGAGA+AGG 0.538656 2_3:+54488764 Msa0299530:CDS
GAGAGAATTGAAACTTCATA+CGG 0.539088 2_3:+54486094 Msa0299530:CDS
CAAGGAAATGAAGTCTGATA+GGG 0.540465 2_3:-54485952 None:intergenic
AGGAATCGATTCCTGGTGGT+TGG 0.544922 2_3:+54486045 Msa0299530:CDS
AAGGCTTCTATCAGTATGCT+AGG 0.546070 2_3:-54488178 None:intergenic
TGGGAATTCGGAGGATGATA+CGG 0.546519 2_3:-54485883 None:intergenic
CATTATTGAAGTCTTGGTGA+GGG 0.546919 2_3:-54488928 None:intergenic
ACGCGTACTCTGTTGAAGTC+GGG 0.547139 2_3:+54485985 Msa0299530:CDS
GGATGATACGGTGGTTGTTG+TGG 0.548386 2_3:-54485871 None:intergenic
GTGGCGGTGGTGAAAGAGAA+GGG 0.549515 2_3:-54485849 None:intergenic
TTAGTGGGCTCATCAGGGTC+AGG 0.553845 2_3:-54488028 None:intergenic
ACTTCATACGGTTTGTGAAG+AGG 0.555784 2_3:+54486106 Msa0299530:CDS
GTGGGCTCATCAGGGTCAGG+TGG 0.563088 2_3:-54488025 None:intergenic
GATTTCGATATGTGGCATCC+GGG 0.563544 2_3:+54489750 Msa0299530:CDS
ATTCCCTTGCAAGACGAGCT+CGG 0.563832 2_3:-54485923 None:intergenic
ACTCCGAGCTCGTCTTGCAA+GGG 0.566242 2_3:+54485920 Msa0299530:CDS
ATATGTGGCATCCGGGCCCA+TGG 0.566837 2_3:+54489757 Msa0299530:CDS
AGCATACTGATAGAAGCCTT+AGG 0.568413 2_3:+54488181 Msa0299530:CDS
TGATGACCTTACCATGGGCC+CGG 0.568904 2_3:-54489768 None:intergenic
TGCACATACTTCCAACCACC+AGG 0.576469 2_3:-54486056 None:intergenic
ATGGGAGAGTGTTGGTCTGG+TGG 0.578110 2_3:+54486143 Msa0299530:CDS
TCTTGGTGAGGGTTCCCGCA+GGG 0.578995 2_3:-54488917 None:intergenic
TTAAGATGGTATTAATGAGT+GGG 0.579556 2_3:+54490177 Msa0299530:three_prime_UTR
CTTGGTGAGGGTTCCCGCAG+GGG 0.579756 2_3:-54488916 None:intergenic
CTTGTATGATGACCTTACCA+TGG 0.582701 2_3:-54489774 None:intergenic
TGATACGGTGGTTGTTGTGG+TGG 0.583597 2_3:-54485868 None:intergenic
AACGCGTACTCTGTTGAAGT+CGG 0.586476 2_3:+54485984 Msa0299530:CDS
CGTGATAGTCACAGATCGCG+TGG 0.587264 2_3:-54485761 None:intergenic
AAGATTGCTTAAAATTAGCA+CGG 0.591721 2_3:-54488863 None:intergenic
GTAAGGTCATCATACAAGGC+AGG 0.594661 2_3:+54489779 Msa0299530:CDS
CCCTGATGAGCCCACTAATG+TGG 0.596860 2_3:+54488033 Msa0299530:CDS
GCCCTAATATGGGAGAGTGT+TGG 0.597098 2_3:+54486135 Msa0299530:CDS
TTGTATGATGACCTTACCAT+GGG 0.598531 2_3:-54489773 None:intergenic
GGTGGCGGTGGTGAAAGAGA+AGG 0.600600 2_3:-54485850 None:intergenic
CTGTCTCAATATTATGCGCA+AGG 0.603782 2_3:-54488809 None:intergenic
ACATTATTGAAGTCTTGGTG+AGG 0.604393 2_3:-54488929 None:intergenic
ACTGGCATATGGCGTTTGGA+GGG 0.606011 2_3:-54489047 None:intergenic
GTGATAGGGATTTCGATATG+TGG 0.606126 2_3:+54489742 Msa0299530:intron
GATTTACCTGATCAAGGGAG+CGG 0.608171 2_3:+54488115 Msa0299530:CDS
GAAGTATCAGACTATTGGCA+TGG 0.611193 2_3:+54489100 Msa0299530:CDS
TAGGCATTATGTATAAGAAG+AGG 0.612938 2_3:+54490105 Msa0299530:intron
CGAGAGAGATGATGTACTCA+CGG 0.613028 2_3:+54485787 Msa0299530:exon
GGAGTTCGGTGAGATTCTGT+GGG 0.622762 2_3:-54485902 None:intergenic
GTGATGATTTACCTGATCAA+GGG 0.625552 2_3:+54488110 Msa0299530:CDS
AATTGTGAAGACAATGGAGA+AGG 0.629019 2_3:+54488977 Msa0299530:CDS
CCACATTAGTGGGCTCATCA+GGG 0.630322 2_3:-54488033 None:intergenic
GAAATGAAGTCTGATAGGGA+CGG 0.631421 2_3:-54485948 None:intergenic
AATCATAATAGTAGCAGTAG+CGG 0.634511 2_3:-54486177 None:intergenic
CAGCATTTCCTCGAAAGTCG+GGG 0.636512 2_3:-54488749 None:intergenic
AATAGTCTGATACTTCTCAA+AGG 0.644183 2_3:-54489093 None:intergenic
GGCCAAGGATTATGCCCCTG+CGG 0.647190 2_3:+54488902 Msa0299530:CDS
GTGATAGTCACAGATCGCGT+GGG 0.650438 2_3:-54485760 None:intergenic
ATCAGAATATATTACACCTG+AGG 0.655152 2_3:+54489070 Msa0299530:CDS
TGACCAAATTGTGAAGACAA+TGG 0.660066 2_3:+54488971 Msa0299530:CDS
CTTGATCAGGTAAATCATCA+CGG 0.667016 2_3:-54488108 None:intergenic
AATGAAGTCTGATAGGGACG+GGG 0.674374 2_3:-54485946 None:intergenic
GAGATTCTGTGGGAATTCGG+AGG 0.674916 2_3:-54485892 None:intergenic
GCTGAAGCAATTGCATCGTG+GGG 0.675101 2_3:+54488055 Msa0299530:CDS
TGGCTGAAGCAATTGCATCG+TGG 0.685188 2_3:+54488053 Msa0299530:CDS
AAGAGCTACAGAGTGCTGTG+CGG 0.714846 2_3:+54488835 Msa0299530:CDS
GAATTCGGAGGATGATACGG+TGG 0.726046 2_3:-54485880 None:intergenic
ATGAAGGAATCGATTCCTGG+TGG 0.794700 2_3:+54486041 Msa0299530:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAGAATATTTTTATAGTTT+AGG + chr2_3:54486883-54486902 Msa0299530:intron 10.0%
!!! TAGAATATTTTTATAGTTTA+GGG + chr2_3:54486884-54486903 Msa0299530:intron 10.0%
!! AAAAAAAAAAACATGTTTAT+TGG + chr2_3:54488573-54488592 Msa0299530:intron 10.0%
!! AAAAAAAAAACATGTTTATT+GGG + chr2_3:54488574-54488593 Msa0299530:intron 10.0%
!!! TTGTTTTAGTATTCAAAATT+TGG + chr2_3:54486269-54486288 Msa0299530:intron 15.0%
!!! TGTTTTAGTATTCAAAATTT+GGG + chr2_3:54486270-54486289 Msa0299530:intron 15.0%
!! TATTCAATTAATCTAAAAAG+TGG - chr2_3:54486657-54486676 None:intergenic 15.0%
!!! ATGGAAGTTTTTTTATTTTT+AGG - chr2_3:54487690-54487709 None:intergenic 15.0%
!!! TTTTCATTAGAATTAGAATA+TGG - chr2_3:54487709-54487728 None:intergenic 15.0%
!!! TTATCACATTAATCTATTTT+CGG - chr2_3:54488232-54488251 None:intergenic 15.0%
!! TTTATTTATTTGTAGATGAA+AGG + chr2_3:54489172-54489191 Msa0299530:intron 15.0%
!! ATAAATTAAACTATGAAGCA+TGG + chr2_3:54486308-54486327 Msa0299530:intron 20.0%
!! AATAACTGAAAAAAAACCAT+CGG + chr2_3:54486673-54486692 Msa0299530:intron 20.0%
!! TGATGTATTTCATATAGTTA+GGG - chr2_3:54486767-54486786 None:intergenic 20.0%
!! TTGATGTATTTCATATAGTT+AGG - chr2_3:54486768-54486787 None:intergenic 20.0%
!! TATATGAAAATCCATCAATT+TGG - chr2_3:54486819-54486838 None:intergenic 20.0%
!!! ATGGATTTTCATATACTTTA+TGG + chr2_3:54486824-54486843 Msa0299530:intron 20.0%
!! TAACTGATGAATCTAAAAAA+TGG + chr2_3:54486960-54486979 Msa0299530:intron 20.0%
!!! GAATCTAAAAAATGGTTTTT+TGG + chr2_3:54486968-54486987 Msa0299530:intron 20.0%
!! AATTTGTCATTGTTGAATAA+TGG + chr2_3:54487026-54487045 Msa0299530:intron 20.0%
!! GATGAAAAAAACATAAAACT+TGG - chr2_3:54487075-54487094 None:intergenic 20.0%
!! TTCTAATGAAAATATTTCCA+AGG + chr2_3:54487717-54487736 Msa0299530:intron 20.0%
!! TCTAATGAAAATATTTCCAA+GGG + chr2_3:54487718-54487737 Msa0299530:intron 20.0%
!! AAATAAACTATATACTCTCA+CGG - chr2_3:54487765-54487784 None:intergenic 20.0%
!!! TATCACATTAATCTATTTTC+GGG - chr2_3:54488231-54488250 None:intergenic 20.0%
!! ATATAAAAAAATCAGAACCA+CGG - chr2_3:54489152-54489171 None:intergenic 20.0%
!!! CATTTACTAAAATCTTTTAG+TGG + chr2_3:54489285-54489304 Msa0299530:intron 20.0%
!! ATACAAGGCATAAAATATTT+AGG + chr2_3:54489327-54489346 Msa0299530:intron 20.0%
!! AATTAAATCTCTATAGGAAT+GGG - chr2_3:54489527-54489546 None:intergenic 20.0%
!! TGAAAGAAAAAATAATGAAC+AGG - chr2_3:54489866-54489885 None:intergenic 20.0%
!! TTGAAAAATGGAAATCTTAA+AGG + chr2_3:54490209-54490228 Msa0299530:three_prime_UTR 20.0%
! GCGAAAATTGAAAAATTGAT+TGG - chr2_3:54486240-54486259 None:intergenic 25.0%
! ATGACATCAATATGAAATGT+CGG + chr2_3:54486416-54486435 Msa0299530:intron 25.0%
!! AATAGATTTGAAATGTAGTG+TGG + chr2_3:54486457-54486476 Msa0299530:intron 25.0%
! GAAAAAAACATAAAACTTGG+AGG - chr2_3:54487072-54487091 None:intergenic 25.0%
! ATAATCTCATCGAATGATAT+TGG + chr2_3:54487103-54487122 Msa0299530:intron 25.0%
! AATTATGCAAAAAAATCCGT+GGG - chr2_3:54487208-54487227 None:intergenic 25.0%
! AAATTATGCAAAAAAATCCG+TGG - chr2_3:54487209-54487228 None:intergenic 25.0%
! ATAAGCAAGTTGTAATACTT+TGG + chr2_3:54487494-54487513 Msa0299530:intron 25.0%
! GTTTAAACGAAATTATTCCT+AGG + chr2_3:54487651-54487670 Msa0299530:intron 25.0%
! AATAAACTATATACTCTCAC+GGG - chr2_3:54487764-54487783 None:intergenic 25.0%
!!! TTTTTGTTGAGAAAAGTATC+CGG + chr2_3:54487842-54487861 Msa0299530:intron 25.0%
!! TACTCCTAAGAATGTTATTT+AGG + chr2_3:54487878-54487897 Msa0299530:intron 25.0%
!! ACTCCTAAGAATGTTATTTA+GGG + chr2_3:54487879-54487898 Msa0299530:intron 25.0%
! ATATTCAAAATGCATACCTA+AGG - chr2_3:54488200-54488219 None:intergenic 25.0%
!!! ATAATAAAAAGGCGTCTATA+TGG + chr2_3:54488330-54488349 Msa0299530:intron 25.0%
! ATTTGATAGATAGGTGAATT+AGG + chr2_3:54488438-54488457 Msa0299530:intron 25.0%
!! CCATAGTGAATTTTCATTTT+AGG - chr2_3:54488469-54488488 None:intergenic 25.0%
! CCTAAAATGAAAATTCACTA+TGG + chr2_3:54488466-54488485 Msa0299530:intron 25.0%
! TGTTACACATGTTCATTATA+GGG + chr2_3:54488635-54488654 Msa0299530:intron 25.0%
! GTCTCCTTAATAATATAACT+TGG - chr2_3:54488671-54488690 None:intergenic 25.0%
! AAGATTGCTTAAAATTAGCA+CGG - chr2_3:54488866-54488885 None:intergenic 25.0%
!! TGCTAATTTTAAGCAATCTT+TGG + chr2_3:54488866-54488885 Msa0299530:CDS 25.0%
! TATAAAAAAATCAGAACCAC+GGG - chr2_3:54489151-54489170 None:intergenic 25.0%
! CAACAAAATTATAACAGCTT+TGG - chr2_3:54489237-54489256 None:intergenic 25.0%
!! CAAAGCTGTTATAATTTTGT+TGG + chr2_3:54489235-54489254 Msa0299530:intron 25.0%
!! TTACTAAAATCTTTTAGTGG+TGG + chr2_3:54489288-54489307 Msa0299530:intron 25.0%
!! ATATTTTATGCCTTGTATTG+TGG - chr2_3:54489325-54489344 None:intergenic 25.0%
! TTGCTAATCCATATTAAATG+TGG + chr2_3:54489457-54489476 Msa0299530:intron 25.0%
! AAAAAAGGCCACATTTAATA+TGG - chr2_3:54489468-54489487 None:intergenic 25.0%
! TGCTAATTATGGGATAAAAA+AGG - chr2_3:54489483-54489502 None:intergenic 25.0%
! CAATTAAATCTCTATAGGAA+TGG - chr2_3:54489528-54489547 None:intergenic 25.0%
! AGCTACAATTAAATCTCTAT+AGG - chr2_3:54489533-54489552 None:intergenic 25.0%
!! TTTAATTGTAGCTCTGTAAT+TGG + chr2_3:54489540-54489559 Msa0299530:intron 25.0%
!! TGCTGGATTATGTTAATTTT+TGG + chr2_3:54489624-54489643 Msa0299530:intron 25.0%
! AATTCTACTTTGTATGTGAT+AGG + chr2_3:54489727-54489746 Msa0299530:intron 25.0%
! ATTCTACTTTGTATGTGATA+GGG + chr2_3:54489728-54489747 Msa0299530:intron 25.0%
! AATCCATGATTAATTCAGAT+CGG + chr2_3:54489816-54489835 Msa0299530:CDS 25.0%
! TGAAGTGTAATTATATGTGT+CGG - chr2_3:54490000-54490019 None:intergenic 25.0%
! TCTAAAAAATTTAGCTGTGT+CGG + chr2_3:54490031-54490050 Msa0299530:intron 25.0%
! CATGTAATCTATCATTAAGA+TGG + chr2_3:54490163-54490182 Msa0299530:three_prime_UTR 25.0%
! ATTAAGATGGTATTAATGAG+TGG + chr2_3:54490176-54490195 Msa0299530:three_prime_UTR 25.0%
! TTAAGATGGTATTAATGAGT+GGG + chr2_3:54490177-54490196 Msa0299530:three_prime_UTR 25.0%
! GGGCAAATTTATTTGAAAAA+TGG + chr2_3:54490197-54490216 Msa0299530:three_prime_UTR 25.0%
GAGAGAATTGAAACTTCATA+CGG + chr2_3:54486094-54486113 Msa0299530:CDS 30.0%
AATCATAATAGTAGCAGTAG+CGG - chr2_3:54486180-54486199 None:intergenic 30.0%
ACTGCTACTATTATGATTCT+TGG + chr2_3:54486182-54486201 Msa0299530:CDS 30.0%
ATAAGCAAGCTGTATTACTT+TGG + chr2_3:54486503-54486522 Msa0299530:intron 30.0%
! CAATGATAAGTTGAATTGAG+TGG + chr2_3:54486570-54486589 Msa0299530:intron 30.0%
CATATAGTTAGGGACTAAAT+TGG - chr2_3:54486757-54486776 None:intergenic 30.0%
! TGACGTATTTTGCATTGTTT+AGG + chr2_3:54486854-54486873 Msa0299530:intron 30.0%
! GACGTATTTTGCATTGTTTA+GGG + chr2_3:54486855-54486874 Msa0299530:intron 30.0%
TAGTTTAGGGACTAAATTGA+TGG + chr2_3:54486928-54486947 Msa0299530:intron 30.0%
AGTGCTAATTACATTCATCT+AGG + chr2_3:54487233-54487252 Msa0299530:intron 30.0%
! ATCACTGCAAACTTTTTAAC+TGG - chr2_3:54487551-54487570 None:intergenic 30.0%
CAGTGATCAGTTGAATTTAA+TGG + chr2_3:54487564-54487583 Msa0299530:intron 30.0%
CTTAGCAACTAGATGATAAA+TGG - chr2_3:54487592-54487611 None:intergenic 30.0%
TGCTAAGCATTTAGTACATA+TGG + chr2_3:54487605-54487624 Msa0299530:intron 30.0%
! TAGGAAATCTTTTAGTACCT+AGG - chr2_3:54487671-54487690 None:intergenic 30.0%
ATGAAAATATTTCCAAGGGA+TGG + chr2_3:54487722-54487741 Msa0299530:intron 30.0%
TGAAAATATTTCCAAGGGAT+GGG + chr2_3:54487723-54487742 Msa0299530:intron 30.0%
ATAAACTATATACTCTCACG+GGG - chr2_3:54487763-54487782 None:intergenic 30.0%
TTGCATGTCTACATTATTCT+TGG + chr2_3:54487790-54487809 Msa0299530:intron 30.0%
!!! CTTGGAAATGTTTTGAAGTT+TGG + chr2_3:54487808-54487827 Msa0299530:intron 30.0%
!!! TTTTGTTGAGAAAAGTATCC+GGG + chr2_3:54487843-54487862 Msa0299530:intron 30.0%
! CTCCTAAGAATGTTATTTAG+GGG + chr2_3:54487880-54487899 Msa0299530:intron 30.0%
TTTGCAATGTTAAGACATCA+AGG + chr2_3:54487993-54488012 Msa0299530:CDS 30.0%
GCTAGAGTTATTTGATAGAT+AGG + chr2_3:54488429-54488448 Msa0299530:intron 30.0%
! ACTTGTACTGTTTGATAGTA+TGG + chr2_3:54488534-54488553 Msa0299530:intron 30.0%
TTTATTGGGATTTGAGCATA+CGG + chr2_3:54488588-54488607 Msa0299530:intron 30.0%
GTGTTACACATGTTCATTAT+AGG + chr2_3:54488634-54488653 Msa0299530:intron 30.0%
ATCTTTGGATGTTCTAATGA+TGG + chr2_3:54488881-54488900 Msa0299530:CDS 30.0%
ACCAAGACTTCAATAATGTT+AGG + chr2_3:54488933-54488952 Msa0299530:CDS 30.0%
ACCTAACATTATTGAAGTCT+TGG - chr2_3:54488937-54488956 None:intergenic 30.0%
! ACTTCAATAATGTTAGGTTG+TGG + chr2_3:54488939-54488958 Msa0299530:CDS 30.0%
! CTTCAATAATGTTAGGTTGT+GGG + chr2_3:54488940-54488959 Msa0299530:CDS 30.0%
! TTCAATAATGTTAGGTTGTG+GGG + chr2_3:54488941-54488960 Msa0299530:CDS 30.0%
TATATTCTGATACTGGCATA+TGG - chr2_3:54489061-54489080 None:intergenic 30.0%
GGTGTAATATATTCTGATAC+TGG - chr2_3:54489068-54489087 None:intergenic 30.0%
ATCAGAATATATTACACCTG+AGG + chr2_3:54489070-54489089 Msa0299530:CDS 30.0%
AATAGTCTGATACTTCTCAA+AGG - chr2_3:54489096-54489115 None:intergenic 30.0%
!! TTTGAGAAGTATCAGACTAT+TGG + chr2_3:54489095-54489114 Msa0299530:CDS 30.0%
! ATGAAAGGAATGTATTTTGC+TGG + chr2_3:54489187-54489206 Msa0299530:intron 30.0%
! CTTTTAGTGGTGGTAATATT+TGG + chr2_3:54489298-54489317 Msa0299530:intron 30.0%
AATATTTGGTCCACAATACA+AGG + chr2_3:54489312-54489331 Msa0299530:intron 30.0%
GCATAAAATATTTAGGCTTC+TGG + chr2_3:54489334-54489353 Msa0299530:intron 30.0%
GTAATCATAACTTGATCATG+TGG + chr2_3:54489689-54489708 Msa0299530:intron 30.0%
ATCCATGATTAATTCAGATC+GGG + chr2_3:54489817-54489836 Msa0299530:CDS 30.0%
TAGGCATTATGTATAAGAAG+AGG + chr2_3:54490105-54490124 Msa0299530:intron 30.0%
AAGAGAGCAAAATAAGTTCA+GGG - chr2_3:54490254-54490273 None:intergenic 30.0%
AAAGAGAGCAAAATAAGTTC+AGG - chr2_3:54490255-54490274 None:intergenic 30.0%
CAAGGAAATGAAGTCTGATA+GGG - chr2_3:54485955-54485974 None:intergenic 35.0%
TCAAGGAAATGAAGTCTGAT+AGG - chr2_3:54485956-54485975 None:intergenic 35.0%
! ATCGATTCCTTCATCCATTT+CGG - chr2_3:54486035-54486054 None:intergenic 35.0%
ATTATCACTGACGTAAGTGT+TGG - chr2_3:54486337-54486356 None:intergenic 35.0%
TAGTGTAACTACATGTGTGT+CGG + chr2_3:54486377-54486396 Msa0299530:intron 35.0%
ACATCAATATGAAATGTCGG+TGG + chr2_3:54486419-54486438 Msa0299530:intron 35.0%
TGCTTATAATAGTGACCGAA+GGG - chr2_3:54486628-54486647 None:intergenic 35.0%
TTGCTTATAATAGTGACCGA+AGG - chr2_3:54486629-54486648 None:intergenic 35.0%
TCAAAGTTCAGGGACTAAAT+TGG - chr2_3:54486726-54486745 None:intergenic 35.0%
TGAAGAGAGACTGATAGTTT+AGG + chr2_3:54486914-54486933 Msa0299530:intron 35.0%
GAAGAGAGACTGATAGTTTA+GGG + chr2_3:54486915-54486934 Msa0299530:intron 35.0%
!! CAATTCAGTTCTAAATCCCA+CGG + chr2_3:54487189-54487208 Msa0299530:intron 35.0%
AGGAGATGTGATTTACTTGA+CGG + chr2_3:54487253-54487272 Msa0299530:intron 35.0%
TAGCTCAAAGCATAGTTTCA+TGG + chr2_3:54487332-54487351 Msa0299530:intron 35.0%
TTGAAGTTCGGATTTCAAAC+TGG + chr2_3:54487372-54487391 Msa0299530:intron 35.0%
! TATTTTCTTTACCCATCCCT+TGG - chr2_3:54487737-54487756 None:intergenic 35.0%
TAAACTATATACTCTCACGG+GGG - chr2_3:54487762-54487781 None:intergenic 35.0%
CACCCCTAAATAACATTCTT+AGG - chr2_3:54487885-54487904 None:intergenic 35.0%
CTTGATCAGGTAAATCATCA+CGG - chr2_3:54488111-54488130 None:intergenic 35.0%
GTGATGATTTACCTGATCAA+GGG + chr2_3:54488110-54488129 Msa0299530:CDS 35.0%
TGGGCATGGGTATAATAAAA+AGG + chr2_3:54488319-54488338 Msa0299530:intron 35.0%
! TTTTCAGTTAGAGCTAGTAG+TGG + chr2_3:54488353-54488372 Msa0299530:intron 35.0%
TTTCAGTTAGAGCTAGTAGT+GGG + chr2_3:54488354-54488373 Msa0299530:intron 35.0%
TGATAGATAGGTGAATTAGG+TGG + chr2_3:54488441-54488460 Msa0299530:intron 35.0%
TTATTGGGATTTGAGCATAC+GGG + chr2_3:54488589-54488608 Msa0299530:intron 35.0%
CGGGAATTAATCTGAAAGTT+TGG + chr2_3:54488608-54488627 Msa0299530:intron 35.0%
ATGTTCATTATAGGGTTGAG+TGG + chr2_3:54488643-54488662 Msa0299530:intron 35.0%
TGTTCATTATAGGGTTGAGT+GGG + chr2_3:54488644-54488663 Msa0299530:intron 35.0%
GGGGCCAAGTTATATTATTA+AGG + chr2_3:54488664-54488683 Msa0299530:intron 35.0%
AAGGACATCTAATCCTGATT+TGG - chr2_3:54488793-54488812 None:intergenic 35.0%
CATTATTGAAGTCTTGGTGA+GGG - chr2_3:54488931-54488950 None:intergenic 35.0%
ACATTATTGAAGTCTTGGTG+AGG - chr2_3:54488932-54488951 None:intergenic 35.0%
ATTGTCTTCACAATTTGGTC+AGG - chr2_3:54488972-54488991 None:intergenic 35.0%
TGACCAAATTGTGAAGACAA+TGG + chr2_3:54488971-54488990 Msa0299530:CDS 35.0%
TCTCCATTGTCTTCACAATT+TGG - chr2_3:54488977-54488996 None:intergenic 35.0%
AATTGTGAAGACAATGGAGA+AGG + chr2_3:54488977-54488996 Msa0299530:CDS 35.0%
AAAATATTTAGGCTTCTGGC+TGG + chr2_3:54489338-54489357 Msa0299530:intron 35.0%
TGCTGCTAACTGCTAATTAT+GGG - chr2_3:54489493-54489512 None:intergenic 35.0%
ATGCTGCTAACTGCTAATTA+TGG - chr2_3:54489494-54489513 None:intergenic 35.0%
!! TCCTTTTAATTGTTGCATGC+TGG + chr2_3:54489607-54489626 Msa0299530:intron 35.0%
TCCAGCATGCAACAATTAAA+AGG - chr2_3:54489611-54489630 None:intergenic 35.0%
TGATCATGTGGTATGAATGA+TGG + chr2_3:54489701-54489720 Msa0299530:intron 35.0%
TTGTATGATGACCTTACCAT+GGG - chr2_3:54489776-54489795 None:intergenic 35.0%
GTGCATTATTCTATGAAGCA+CGG + chr2_3:54489911-54489930 Msa0299530:intron 35.0%
TACATAATGCCTATGAAGCA+CGG - chr2_3:54490098-54490117 None:intergenic 35.0%
CAACAACCAGTCACCAATAT+GGG - chr2_3:54485704-54485723 None:intergenic 40.0%
GAAGATAGATAGAGAGAGAG+AGG - chr2_3:54485741-54485760 None:intergenic 40.0%
!!! GGATTTGAGGTTTTTAGCGA+CGG - chr2_3:54485820-54485839 None:intergenic 40.0%
AAATGAAGTCTGATAGGGAC+GGG - chr2_3:54485950-54485969 None:intergenic 40.0%
GAAATGAAGTCTGATAGGGA+CGG - chr2_3:54485951-54485970 None:intergenic 40.0%
!!! ATCCATTTCGGTTTTGGAAG+CGG - chr2_3:54486023-54486042 None:intergenic 40.0%
TCCAAAACCGAAATGGATGA+AGG + chr2_3:54486025-54486044 Msa0299530:CDS 40.0%
! TCCTTCATCCATTTCGGTTT+TGG - chr2_3:54486029-54486048 None:intergenic 40.0%
ACTTCATACGGTTTGTGAAG+AGG + chr2_3:54486106-54486125 Msa0299530:CDS 40.0%
ACCAACACTCTCCCATATTA+GGG - chr2_3:54486139-54486158 None:intergenic 40.0%
AATATGAAATGTCGGTGGCT+TGG + chr2_3:54486424-54486443 Msa0299530:intron 40.0%
ATTTGTCCGGGTGAAAACTA+TGG - chr2_3:54486598-54486617 None:intergenic 40.0%
TTAGGGACTAAATTGGTGAG+AGG - chr2_3:54486750-54486769 None:intergenic 40.0%
! AGTCCCTAGTATTGAGATTG+CGG + chr2_3:54486791-54486810 Msa0299530:intron 40.0%
TTGGTTACAATAGTGACCAG+AGG + chr2_3:54486987-54487006 Msa0299530:intron 40.0%
CAGTAGTTAGATACATCCTC+TGG - chr2_3:54487006-54487025 None:intergenic 40.0%
ATTGTTATGCCGATGAGTGA+AGG + chr2_3:54487151-54487170 Msa0299530:intron 40.0%
TGCATAATCTAGTGCACTCA+TGG + chr2_3:54487286-54487305 Msa0299530:intron 40.0%
TCATGGAACAACTGAACAAG+TGG + chr2_3:54487349-54487368 Msa0299530:intron 40.0%
CTGAACAAGTGGTTGAAGTT+CGG + chr2_3:54487360-54487379 Msa0299530:intron 40.0%
ATGCGCATACACACACATTA+AGG + chr2_3:54487417-54487436 Msa0299530:intron 40.0%
GGAGTAAGAAATCGTAATCC+CGG - chr2_3:54487864-54487883 None:intergenic 40.0%
GTAAGTACTCCTAAAACCAG+TGG + chr2_3:54487904-54487923 Msa0299530:intron 40.0%
!!! ACACAACTTCCACTGGTTTT+AGG - chr2_3:54487916-54487935 None:intergenic 40.0%
ATTGCTTCAGCCACATTAGT+GGG - chr2_3:54488046-54488065 None:intergenic 40.0%
AATTGCTTCAGCCACATTAG+TGG - chr2_3:54488047-54488066 None:intergenic 40.0%
CGTGATGATTTACCTGATCA+AGG + chr2_3:54488109-54488128 Msa0299530:CDS 40.0%
AAGGCTTCTATCAGTATGCT+AGG - chr2_3:54488181-54488200 None:intergenic 40.0%
AGCATACTGATAGAAGCCTT+AGG + chr2_3:54488181-54488200 Msa0299530:CDS 40.0%
!! TCAAGCCTTAGTTTGCTAGA+TGG + chr2_3:54488299-54488318 Msa0299530:intron 40.0%
!! CAAGCCTTAGTTTGCTAGAT+GGG + chr2_3:54488300-54488319 Msa0299530:intron 40.0%
!! TTAGTTTGCTAGATGGGCAT+GGG + chr2_3:54488306-54488325 Msa0299530:intron 40.0%
GGGTCATGAATGTGAAATGA+AGG + chr2_3:54488380-54488399 Msa0299530:intron 40.0%
GTTCATTATAGGGTTGAGTG+GGG + chr2_3:54488645-54488664 Msa0299530:intron 40.0%
TTAGAGCAACAATCGTCACA+TGG - chr2_3:54488714-54488733 None:intergenic 40.0%
AAATGCTGAGTGTGTAGAGA+AGG + chr2_3:54488764-54488783 Msa0299530:CDS 40.0%
GTAGAGAAGGTTTCCAAATC+AGG + chr2_3:54488777-54488796 Msa0299530:CDS 40.0%
CTGTCTCAATATTATGCGCA+AGG - chr2_3:54488812-54488831 None:intergenic 40.0%
!! GGTGTTGATGTGATGACATT+TGG + chr2_3:54489011-54489030 Msa0299530:CDS 40.0%
! GAAGTATCAGACTATTGGCA+TGG + chr2_3:54489100-54489119 Msa0299530:CDS 40.0%
TCAGACTATTGGCATGGAAA+TGG + chr2_3:54489106-54489125 Msa0299530:CDS 40.0%
GTCTATAGCATTTATTCCCG+TGG + chr2_3:54489132-54489151 Msa0299530:intron 40.0%
GTGATAGGGATTTCGATATG+TGG + chr2_3:54489742-54489761 Msa0299530:intron 40.0%
CTTGTATGATGACCTTACCA+TGG - chr2_3:54489777-54489796 None:intergenic 40.0%
CATGGTAAGGTCATCATACA+AGG + chr2_3:54489775-54489794 Msa0299530:CDS 40.0%
AGCCCGATCTGAATTAATCA+TGG - chr2_3:54489822-54489841 None:intergenic 40.0%
CCAACAACCAGTCACCAATA+TGG - chr2_3:54485705-54485724 None:intergenic 45.0%
! CCATATTGGTGACTGGTTGT+TGG + chr2_3:54485702-54485721 Msa0299530:five_prime_UTR 45.0%
CGAGAGAGATGATGTACTCA+CGG + chr2_3:54485787-54485806 Msa0299530:exon 45.0%
!!! AGGGTTTTGTGGTGGATTTG+AGG - chr2_3:54485833-54485852 None:intergenic 45.0%
!! GAAAGAGAAGGGTTTTGTGG+TGG - chr2_3:54485841-54485860 None:intergenic 45.0%
! GGTGAAAGAGAAGGGTTTTG+TGG - chr2_3:54485844-54485863 None:intergenic 45.0%
TGGGAATTCGGAGGATGATA+CGG - chr2_3:54485886-54485905 None:intergenic 45.0%
GGTGAGATTCTGTGGGAATT+CGG - chr2_3:54485898-54485917 None:intergenic 45.0%
AATGAAGTCTGATAGGGACG+GGG - chr2_3:54485949-54485968 None:intergenic 45.0%
GTACGCGTTGTTCGATTTCA+AGG - chr2_3:54485973-54485992 None:intergenic 45.0%
AACGCGTACTCTGTTGAAGT+CGG + chr2_3:54485984-54486003 Msa0299530:CDS 45.0%
ATCCGCTTCCAAAACCGAAA+TGG + chr2_3:54486018-54486037 Msa0299530:CDS 45.0%
! TGGATGAAGGAATCGATTCC+TGG + chr2_3:54486038-54486057 Msa0299530:CDS 45.0%
! ATGAAGGAATCGATTCCTGG+TGG + chr2_3:54486041-54486060 Msa0299530:CDS 45.0%
GACCAACACTCTCCCATATT+AGG - chr2_3:54486140-54486159 None:intergenic 45.0%
!! AATATGGGAGAGTGTTGGTC+TGG + chr2_3:54486140-54486159 Msa0299530:CDS 45.0%
! CTTGGTGATACTTGTACTCG+AGG + chr2_3:54486200-54486219 Msa0299530:CDS 45.0%
ATACTTGTACTCGAGGTTGC+AGG + chr2_3:54486207-54486226 Msa0299530:CDS 45.0%
TGAAATGTAGTGTGGCGTGT+AGG + chr2_3:54486465-54486484 Msa0299530:intron 45.0%
! AAGGGTGTACACATTTGTCC+GGG - chr2_3:54486610-54486629 None:intergenic 45.0%
! GAAGGGTGTACACATTTGTC+CGG - chr2_3:54486611-54486630 None:intergenic 45.0%
GGACAAATGTGTACACCCTT+CGG + chr2_3:54486610-54486629 Msa0299530:intron 45.0%
TAGTTCAGGGACTAAACCGA+TGG - chr2_3:54486692-54486711 None:intergenic 45.0%
!! GGTGAGAGGTTGATAGTTCA+GGG - chr2_3:54486705-54486724 None:intergenic 45.0%
!! TGGTGAGAGGTTGATAGTTC+AGG - chr2_3:54486706-54486725 None:intergenic 45.0%
TCAGGGACTAAATTGGTGAG+AGG - chr2_3:54486719-54486738 None:intergenic 45.0%
GGTGAGAGGTTCAAAGTTCA+GGG - chr2_3:54486736-54486755 None:intergenic 45.0%
TGGTGAGAGGTTCAAAGTTC+AGG - chr2_3:54486737-54486756 None:intergenic 45.0%
! GTCCCTAGTATTGAGATTGC+GGG + chr2_3:54486792-54486811 Msa0299530:intron 45.0%
GTCCCGCAATCTCAATACTA+GGG - chr2_3:54486797-54486816 None:intergenic 45.0%
AGATTGCGGGACCAAATTGA+TGG + chr2_3:54486805-54486824 Msa0299530:intron 45.0%
GTACTGCAACCTTCACTCAT+CGG - chr2_3:54487163-54487182 None:intergenic 45.0%
CACTCATGGATTCTAAGCTG+TGG + chr2_3:54487300-54487319 Msa0299530:intron 45.0%
AAACCAGTGGAAGTTGTGTG+TGG + chr2_3:54487917-54487936 Msa0299530:intron 45.0%
ATTCCACACACAACTTCCAC+TGG - chr2_3:54487923-54487942 None:intergenic 45.0%
ATCGTGGGGTTTGGATTATG+TGG + chr2_3:54488069-54488088 Msa0299530:CDS 45.0%
GATTTACCTGATCAAGGGAG+CGG + chr2_3:54488115-54488134 Msa0299530:CDS 45.0%
CATGCCCATCTAGCAAACTA+AGG - chr2_3:54488307-54488326 None:intergenic 45.0%
!! CTTAGTTTGCTAGATGGGCA+TGG + chr2_3:54488305-54488324 Msa0299530:intron 45.0%
! TTAGAGCTAGTAGTGGGAGT+GGG + chr2_3:54488360-54488379 Msa0299530:intron 45.0%
TCAGCATTTCCTCGAAAGTC+GGG - chr2_3:54488753-54488772 None:intergenic 45.0%
CTCAGCATTTCCTCGAAAGT+CGG - chr2_3:54488754-54488773 None:intergenic 45.0%
GGATGTTCTAATGATGGCCA+AGG + chr2_3:54488887-54488906 Msa0299530:CDS 45.0%
TGATACTGGCATATGGCGTT+TGG - chr2_3:54489054-54489073 None:intergenic 45.0%
TGATACTTCTCAAAGGCCTC+AGG - chr2_3:54489089-54489108 None:intergenic 45.0%
TCACCATGCATGCGTAATCA+TGG + chr2_3:54489574-54489593 Msa0299530:intron 45.0%
GGATTTCGATATGTGGCATC+CGG + chr2_3:54489749-54489768 Msa0299530:CDS 45.0%
GATTTCGATATGTGGCATCC+GGG + chr2_3:54489750-54489769 Msa0299530:CDS 45.0%
GTAAGGTCATCATACAAGGC+AGG + chr2_3:54489779-54489798 Msa0299530:CDS 45.0%
!! TATATGTGTCGGTGTCGTGT+CGG - chr2_3:54489989-54490008 None:intergenic 45.0%
ATGCCTATGAAGCACGGATA+CGG - chr2_3:54490092-54490111 None:intergenic 45.0%
GTGATAGTCACAGATCGCGT+GGG - chr2_3:54485763-54485782 None:intergenic 50.0%
TGATACGGTGGTTGTTGTGG+TGG - chr2_3:54485871-54485890 None:intergenic 50.0%
GGATGATACGGTGGTTGTTG+TGG - chr2_3:54485874-54485893 None:intergenic 50.0%
GAATTCGGAGGATGATACGG+TGG - chr2_3:54485883-54485902 None:intergenic 50.0%
GAGATTCTGTGGGAATTCGG+AGG - chr2_3:54485895-54485914 None:intergenic 50.0%
! GGAGTTCGGTGAGATTCTGT+GGG - chr2_3:54485905-54485924 None:intergenic 50.0%
ATTCCCTTGCAAGACGAGCT+CGG - chr2_3:54485926-54485945 None:intergenic 50.0%
ACGCGTACTCTGTTGAAGTC+GGG + chr2_3:54485985-54486004 Msa0299530:CDS 50.0%
! AGGAATCGATTCCTGGTGGT+TGG + chr2_3:54486045-54486064 Msa0299530:CDS 50.0%
TGCACATACTTCCAACCACC+AGG - chr2_3:54486059-54486078 None:intergenic 50.0%
! AGAGGCGAAGTGCCCTAATA+TGG + chr2_3:54486124-54486143 Msa0299530:CDS 50.0%
! GAGGCGAAGTGCCCTAATAT+GGG + chr2_3:54486125-54486144 Msa0299530:CDS 50.0%
! GCCCTAATATGGGAGAGTGT+TGG + chr2_3:54486135-54486154 Msa0299530:CDS 50.0%
! GTGTTGGTCTGGTGGTGAAA+CGG + chr2_3:54486151-54486170 Msa0299530:CDS 50.0%
! TGTTGGTCTGGTGGTGAAAC+GGG + chr2_3:54486152-54486171 Msa0299530:CDS 50.0%
GCGTGTAGGTGTGTGCATAT+AGG + chr2_3:54486479-54486498 Msa0299530:intron 50.0%
! GTGGCTCCATAGTTTTCACC+CGG + chr2_3:54486589-54486608 Msa0299530:intron 50.0%
GGTCCCGCAATCTCAATACT+AGG - chr2_3:54486798-54486817 None:intergenic 50.0%
GCGCATGCACATGTGTTACA+AGG - chr2_3:54487403-54487422 None:intergenic 50.0%
!! CCACATTAGTGGGCTCATCA+GGG - chr2_3:54488036-54488055 None:intergenic 50.0%
TGGCTGAAGCAATTGCATCG+TGG + chr2_3:54488053-54488072 Msa0299530:CDS 50.0%
GGCTGAAGCAATTGCATCGT+GGG + chr2_3:54488054-54488073 Msa0299530:CDS 50.0%
GCTGAAGCAATTGCATCGTG+GGG + chr2_3:54488055-54488074 Msa0299530:CDS 50.0%
AGCAATTGCATCGTGGGGTT+TGG + chr2_3:54488060-54488079 Msa0299530:CDS 50.0%
AAATGACCGCTCCCTTGATC+AGG - chr2_3:54488124-54488143 None:intergenic 50.0%
! GTTAGAGCTAGTAGTGGGAG+TGG + chr2_3:54488359-54488378 Msa0299530:intron 50.0%
CAGCATTTCCTCGAAAGTCG+GGG - chr2_3:54488752-54488771 None:intergenic 50.0%
!! AAGAGCTACAGAGTGCTGTG+CGG + chr2_3:54488835-54488854 Msa0299530:CDS 50.0%
ACTGGCATATGGCGTTTGGA+GGG - chr2_3:54489050-54489069 None:intergenic 50.0%
TACTGGCATATGGCGTTTGG+AGG - chr2_3:54489051-54489070 None:intergenic 50.0%
TCTATAGGAATGGGCCACCA+GGG - chr2_3:54489518-54489537 None:intergenic 50.0%
GTGCCATGATTACGCATGCA+TGG - chr2_3:54489580-54489599 None:intergenic 50.0%
TATGAAGCACGGACACTCCT+TGG + chr2_3:54489922-54489941 Msa0299530:intron 50.0%
! ATTTAGCTGTGTCGGCGAGT+CGG + chr2_3:54490039-54490058 Msa0299530:intron 50.0%
ATGAAGCACGGATACGGACT+CGG - chr2_3:54490086-54490105 None:intergenic 50.0%
AGTCCGTATCCGTGCTTCAT+AGG + chr2_3:54490086-54490105 Msa0299530:intron 50.0%
! TGGTGACTGGTTGTTGGCGT+TGG + chr2_3:54485708-54485727 Msa0299530:five_prime_UTR 55.0%
CGTGATAGTCACAGATCGCG+TGG - chr2_3:54485764-54485783 None:intergenic 55.0%
GTGGCGGTGGTGAAAGAGAA+GGG - chr2_3:54485852-54485871 None:intergenic 55.0%
TACGGTGGTTGTTGTGGTGG+CGG - chr2_3:54485868-54485887 None:intergenic 55.0%
! CGGAGTTCGGTGAGATTCTG+TGG - chr2_3:54485906-54485925 None:intergenic 55.0%
TGCAAGACGAGCTCGGAGTT+CGG - chr2_3:54485919-54485938 None:intergenic 55.0%
AACTCCGAGCTCGTCTTGCA+AGG + chr2_3:54485919-54485938 Msa0299530:CDS 55.0%
ACTCCGAGCTCGTCTTGCAA+GGG + chr2_3:54485920-54485939 Msa0299530:CDS 55.0%
!! ATGGGAGAGTGTTGGTCTGG+TGG + chr2_3:54486143-54486162 Msa0299530:CDS 55.0%
!! TTAGTGGGCTCATCAGGGTC+AGG - chr2_3:54488031-54488050 None:intergenic 55.0%
CCCTGATGAGCCCACTAATG+TGG + chr2_3:54488033-54488052 Msa0299530:CDS 55.0%
!! GCCACATTAGTGGGCTCATC+AGG - chr2_3:54488037-54488056 None:intergenic 55.0%
!! AGAGCTACAGAGTGCTGTGC+GGG + chr2_3:54488836-54488855 Msa0299530:CDS 55.0%
ATGGAGAAGGTGAGAGCAGC+AGG + chr2_3:54488990-54489009 Msa0299530:CDS 55.0%
TAGCAGTTAGCAGCATGCCC+TGG + chr2_3:54489498-54489517 Msa0299530:intron 55.0%
CTCTATAGGAATGGGCCACC+AGG - chr2_3:54489519-54489538 None:intergenic 55.0%
TGATGACCTTACCATGGGCC+CGG - chr2_3:54489771-54489790 None:intergenic 55.0%
GCACGGACACTCCTTGGATA+AGG + chr2_3:54489928-54489947 Msa0299530:intron 55.0%
ACGGGGACACACCTTATCCA+AGG - chr2_3:54489942-54489961 None:intergenic 55.0%
ACACGACACGTGTCTGACAC+GGG - chr2_3:54489960-54489979 None:intergenic 55.0%
GACACGACACGTGTCTGACA+CGG - chr2_3:54489961-54489980 None:intergenic 55.0%
CTCGGACACTTGACACGACA+CGG - chr2_3:54490068-54490087 None:intergenic 55.0%
! GGTGGCGGTGGTGAAAGAGA+AGG - chr2_3:54485853-54485872 None:intergenic 60.0%
! TCATCAGGGTCAGGTGGTGG+AGG - chr2_3:54488022-54488041 None:intergenic 60.0%
GCAACAGTCCCCGACTTTCG+AGG + chr2_3:54488741-54488760 Msa0299530:intron 60.0%
GGCCAAGGATTATGCCCCTG+CGG + chr2_3:54488902-54488921 Msa0299530:CDS 60.0%
GCCAAGGATTATGCCCCTGC+GGG + chr2_3:54488903-54488922 Msa0299530:CDS 60.0%
! TCCCGCAGGGGCATAATCCT+TGG - chr2_3:54488907-54488926 None:intergenic 60.0%
TCTTGGTGAGGGTTCCCGCA+GGG - chr2_3:54488920-54488939 None:intergenic 60.0%
CAGTTAGCAGCATGCCCTGG+TGG + chr2_3:54489501-54489520 Msa0299530:intron 60.0%
ATATGTGGCATCCGGGCCCA+TGG + chr2_3:54489757-54489776 Msa0299530:CDS 60.0%
CACGACACGTGTCTGACACG+GGG - chr2_3:54489959-54489978 None:intergenic 60.0%
!! TGTCGGTGTCGTGTCGGTGT+CGG - chr2_3:54489983-54490002 None:intergenic 60.0%
!! GGTGGTTGTTGTGGTGGCGG+TGG - chr2_3:54485865-54485884 None:intergenic 65.0%
GGCTCATCAGGGTCAGGTGG+TGG - chr2_3:54488025-54488044 None:intergenic 65.0%
GTGGGCTCATCAGGGTCAGG+TGG - chr2_3:54488028-54488047 None:intergenic 65.0%
CTTGGTGAGGGTTCCCGCAG+GGG - chr2_3:54488919-54488938 None:intergenic 65.0%
GTCTTGGTGAGGGTTCCCGC+AGG - chr2_3:54488921-54488940 None:intergenic 65.0%
TGGCATCCGGGCCCATGGTA+AGG + chr2_3:54489762-54489781 Msa0299530:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 54485701 54490281 54485701 ID=Msa0299530;Name=Msa0299530
chr2_3 mRNA 54485701 54490281 54485701 ID=Msa0299530-mRNA-1;Parent=Msa0299530;Name=Msa0299530-mRNA-1;_AED=0.01;_eAED=0.01;_QI=94|1|1|1|0.75|0.6|5|227|378
chr2_3 exon 54485701 54486228 54485701 ID=Msa0299530-mRNA-1:exon:17420;Parent=Msa0299530-mRNA-1
chr2_3 exon 54487991 54488202 54487991 ID=Msa0299530-mRNA-1:exon:17421;Parent=Msa0299530-mRNA-1
chr2_3 exon 54488748 54489127 54488748 ID=Msa0299530-mRNA-1:exon:17422;Parent=Msa0299530-mRNA-1
chr2_3 exon 54489749 54489912 54489749 ID=Msa0299530-mRNA-1:exon:17423;Parent=Msa0299530-mRNA-1
chr2_3 exon 54490108 54490281 54490108 ID=Msa0299530-mRNA-1:exon:17424;Parent=Msa0299530-mRNA-1
chr2_3 five_prime_UTR 54485701 54485794 54485701 ID=Msa0299530-mRNA-1:five_prime_utr;Parent=Msa0299530-mRNA-1
chr2_3 CDS 54485795 54486228 54485795 ID=Msa0299530-mRNA-1:cds;Parent=Msa0299530-mRNA-1
chr2_3 CDS 54487991 54488202 54487991 ID=Msa0299530-mRNA-1:cds;Parent=Msa0299530-mRNA-1
chr2_3 CDS 54488748 54489127 54488748 ID=Msa0299530-mRNA-1:cds;Parent=Msa0299530-mRNA-1
chr2_3 CDS 54489749 54489859 54489749 ID=Msa0299530-mRNA-1:cds;Parent=Msa0299530-mRNA-1
chr2_3 three_prime_UTR 54489860 54489912 54489860 ID=Msa0299530-mRNA-1:three_prime_utr;Parent=Msa0299530-mRNA-1
chr2_3 three_prime_UTR 54490108 54490281 54490108 ID=Msa0299530-mRNA-1:three_prime_utr;Parent=Msa0299530-mRNA-1
Gene Sequence

>Msa0299530

ATGATGTACTCACGGTTCAGAACCGTCGCTAAAAACCTCAAATCCACCACAAAACCCTTCTCTTTCACCACCGCCACCACAACAACCACCGTATCATCCTCCGAATTCCCACAGAATCTCACCGAACTCCGAGCTCGTCTTGCAAGGGAATCCCCGTCCCTATCAGACTTCATTTCCTTGAAATCGAACAACGCGTACTCTGTTGAAGTCGGGACGAAGAAGAATCCGCTTCCAAAACCGAAATGGATGAAGGAATCGATTCCTGGTGGTTGGAAGTATGTGCAGATTAAGAAGAAGCTGAGAGAATTGAAACTTCATACGGTTTGTGAAGAGGCGAAGTGCCCTAATATGGGAGAGTGTTGGTCTGGTGGTGAAACGGGTACCGCTACTGCTACTATTATGATTCTTGGTGATACTTGTACTCGAGGTTGCAGATTTTGCAATGTTAAGACATCAAGGACTCCTCCACCACCTGACCCTGATGAGCCCACTAATGTGGCTGAAGCAATTGCATCGTGGGGTTTGGATTATGTGGTTATAACAAGCGTTGACCGTGATGATTTACCTGATCAAGGGAGCGGTCATTTTACTGAAACAGTTCAGAAGCTGAAGATACTGAAACCTAGCATACTGATAGAAGCCTTAGTCCCCGACTTTCGAGGAAATGCTGAGTGTGTAGAGAAGGTTTCCAAATCAGGATTAGATGTCCTTGCGCATAATATTGAGACAGTTGAAGAGCTACAGAGTGCTGTGCGGGATCACCGTGCTAATTTTAAGCAATCTTTGGATGTTCTAATGATGGCCAAGGATTATGCCCCTGCGGGAACCCTCACCAAGACTTCAATAATGTTAGGTTGTGGGGAAACACCTGACCAAATTGTGAAGACAATGGAGAAGGTGAGAGCAGCAGGTGTTGATGTGATGACATTTGGTCAGTATATGAGACCCTCCAAACGCCATATGCCAGTATCAGAATATATTACACCTGAGGCCTTTGAGAAGTATCAGACTATTGGCATGGAAATGGGATTTCGATATGTGGCATCCGGGCCCATGGTAAGGTCATCATACAAGGCAGGTGAATTCTATATTAAATCCATGATTAATTCAGATCGGGCTGTATCTTCTCAAAGCTGA

Protein sequence

>Msa0299530

MMYSRFRTVAKNLKSTTKPFSFTTATTTTTVSSSEFPQNLTELRARLARESPSLSDFISLKSNNAYSVEVGTKKNPLPKPKWMKESIPGGWKYVQIKKKLRELKLHTVCEEAKCPNMGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRTPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLPDQGSGHFTETVQKLKILKPSILIEALVPDFRGNAECVEKVSKSGLDVLAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYAPAGTLTKTSIMLGCGETPDQIVKTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFEKYQTIGMEMGFRYVASGPMVRSSYKAGEFYIKSMINSDRAVSSQS*