AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0123000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0123000 MtrunA17_Chr1g0183331 95.620 411 15 1 1 408 1 411 0.0 810
Msa0123000 MtrunA17_Chr4g0043651 41.265 332 172 5 86 400 30 355 1.32e-78 246
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0123000 AT5G44000.1 67.614 352 104 3 61 403 44 394 2.77e-177 500
Msa0123000 AT4G19880.1 39.766 342 183 5 75 399 20 355 3.70e-74 235
Msa0123000 AT5G45020.1 38.739 333 177 6 87 400 1 325 2.36e-71 227
Msa0123000 AT5G45020.2 38.739 333 177 6 87 400 1 325 2.36e-71 227
Msa0123000 AT5G44990.2 39.117 317 170 6 100 399 11 321 5.05e-69 222
Msa0123000 AT5G44990.1 39.117 317 170 6 100 399 11 321 5.05e-69 222
Msa0123000 AT4G19880.2 36.957 368 183 6 75 399 20 381 1.23e-68 222
Msa0123000 AT5G44990.3 42.795 229 127 1 175 403 18 242 2.42e-59 194
Msa0123000 AT4G19880.3 40.230 261 137 4 75 318 20 278 2.75e-55 185
Msa0123000 AT5G44990.4 36.803 269 142 7 100 351 11 268 3.08e-52 176

Find 161 sgRNAs with CRISPR-Local

Find 378 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTTAATTCCGGGTTAAA+TGG 0.145587 1_3:-49898978 Msa0123000:CDS
CCGCTTTATCATATGCTTCT+TGG 0.182145 1_3:+49898550 None:intergenic
TGAACCAGTATTTGTTAAAT+AGG 0.222094 1_3:-49898065 Msa0123000:exon
AGACTTTGAAGGAAGTTTAT+AGG 0.256685 1_3:-49899100 Msa0123000:CDS
ATAATTCAATTGTTTAATTC+CGG 0.258778 1_3:-49898987 Msa0123000:CDS
CTCATTACATACAACATCTT+TGG 0.263092 1_3:+49899019 None:intergenic
ATTACAAGTATCTGCAACTT+TGG 0.276080 1_3:+49898225 None:intergenic
ATATGCAATTCAACGCTTAT+AGG 0.284144 1_3:-49897991 Msa0123000:three_prime_UTR
TCTTTCACCACCCGAGTTAA+AGG 0.284660 1_3:-49898931 Msa0123000:CDS
TACACACCATTGTTCACATT+TGG 0.307861 1_3:+49898876 None:intergenic
TGGACCGGAGAATCGGAATT+TGG 0.312564 1_3:+49899325 None:intergenic
ATTGCCTATTTAACAAATAC+TGG 0.329847 1_3:+49898061 None:intergenic
CACACTTTCAATTTCATCTC+TGG 0.329934 1_3:-49897872 Msa0123000:three_prime_UTR
TAATTCAATTGTTTAATTCC+GGG 0.335485 1_3:-49898986 Msa0123000:CDS
GAGCTGCCACGTGGAGTTCC+AGG 0.336140 1_3:+49899403 None:intergenic
GTTCTGTTACAAAACTTCTC+TGG 0.344517 1_3:-49899472 Msa0123000:CDS
TCTGAAGTTGAAGGCATAAT+TGG 0.346959 1_3:+49898139 None:intergenic
GACAAGGTGGTGTGAGGAAG+AGG 0.351548 1_3:+49899607 None:intergenic
TCGGGCAATTAGTCCGAGTT+TGG 0.357269 1_3:-49899141 Msa0123000:CDS
TCGGAATTTGGAAGCGGGTC+TGG 0.361164 1_3:+49899337 None:intergenic
ATACTCATACAACTTCTTCT+TGG 0.361565 1_3:+49898377 None:intergenic
CGCCGGGAATGGACGGGTCG+TGG 0.375710 1_3:-49899190 Msa0123000:CDS
AAGATCCAAGTCCGGGTTAT+GGG 0.387190 1_3:+49898950 None:intergenic
TTCAAACGAGTTGGCGATAC+GGG 0.393026 1_3:-49899164 Msa0123000:CDS
CTGGGGCCGGTCCCTCCCAC+CGG 0.396579 1_3:-49899453 Msa0123000:CDS
TTACAAGTATCTGCAACTTT+GGG 0.397228 1_3:+49898226 None:intergenic
GGTGGGCCCACGGGCATGGC+AGG 0.401801 1_3:+49899273 None:intergenic
GTCTGTTTACTACTTTGATT+CGG 0.402179 1_3:-49898434 Msa0123000:CDS
TCCCTGGGTTGAGAGGAAAA+AGG 0.407425 1_3:+49898170 None:intergenic
AAAGATCCAAGTCCGGGTTA+TGG 0.407434 1_3:+49898949 None:intergenic
GGAATATCCGCCGGTGGGGT+CGG 0.408123 1_3:+49899358 None:intergenic
ATCATTTGATTTGAGCTGGC+TGG 0.408327 1_3:+49897838 None:intergenic
TTCTGTTACAAAACTTCTCT+GGG 0.408913 1_3:-49899471 Msa0123000:CDS
TTCTTTGCATGCCTCATGGC+AGG 0.410450 1_3:-49898108 Msa0123000:CDS
TCCCACGACCCGTCCATTCC+CGG 0.410480 1_3:+49899188 None:intergenic
CTACATGCGTGACATTTATC+AGG 0.410736 1_3:-49898340 Msa0123000:intron
CGACAACCACTTTCCGCAAC+CGG 0.426378 1_3:-49899574 Msa0123000:CDS
ACCGGTGTCAGTGGCATCGC+CGG 0.428200 1_3:-49899207 Msa0123000:CDS
ATTTCATGCTCTGAAGTTGA+AGG 0.430518 1_3:+49898130 None:intergenic
GAAGACCCGGTGGGAGGGAC+CGG 0.431442 1_3:+49899447 None:intergenic
AATTAGTCCGAGTTTGGATA+AGG 0.434261 1_3:-49899135 Msa0123000:CDS
TGTTTAATTCCGGGTTAAAT+GGG 0.435774 1_3:-49898977 Msa0123000:CDS
GTCAGTGGCATCGCCGGGAA+TGG 0.437517 1_3:-49899201 Msa0123000:CDS
CTGGTTCAGTTGATGATGAT+AGG 0.444961 1_3:+49898080 None:intergenic
AGAACGGATGAGGGAACTTC+CGG 0.445710 1_3:+49899544 None:intergenic
TGAACAAATCTTTCATCCGT+TGG 0.450998 1_3:-49898039 Msa0123000:three_prime_UTR
TATCCGCCGGTGGGGTCGGA+GGG 0.453806 1_3:+49899362 None:intergenic
CTGAGAAGTGGTGGGTATGA+TGG 0.455128 1_3:-49899077 Msa0123000:CDS
AAGAATCATTTGATTTGAGC+TGG 0.455287 1_3:+49897834 None:intergenic
TTCCGGTGAGTCTCCGGTTG+CGG 0.460175 1_3:+49899561 None:intergenic
TCACCACCGTCCGCACCGCC+TGG 0.466420 1_3:-49899421 Msa0123000:CDS
TGTTGTCGAGGGACATAGTC+AGG 0.467332 1_3:+49899519 None:intergenic
TACTAAATGTAATCATGTAC+TGG 0.468251 1_3:-49897939 Msa0123000:three_prime_UTR
GTTGGCCCATAACCCGGACT+TGG 0.471548 1_3:-49898955 Msa0123000:CDS
ATATCCGCCGGTGGGGTCGG+AGG 0.471724 1_3:+49899361 None:intergenic
ACGAGTTGGCGATACGGGTC+GGG 0.473229 1_3:-49899159 Msa0123000:CDS
GTGGCATCGCCGGGAATGGA+CGG 0.474114 1_3:-49899197 Msa0123000:CDS
TCATTTGATTTGAGCTGGCT+GGG 0.476054 1_3:+49897839 None:intergenic
TCGGCGGTGGACCGGAGAAT+CGG 0.477661 1_3:+49899318 None:intergenic
CTCAATCTTATCCTTTAACT+CGG 0.479397 1_3:+49898920 None:intergenic
TCAATCTTATCCTTTAACTC+GGG 0.490673 1_3:+49898921 None:intergenic
GGGAACTTCCGGTGAGTCTC+CGG 0.493773 1_3:+49899555 None:intergenic
TAATTGGTCTAATGCTCCCT+GGG 0.497106 1_3:+49898155 None:intergenic
TAATTCCGGGTTAAATGGGT+TGG 0.498858 1_3:-49898973 Msa0123000:CDS
GGCATTGTTGTTGTTGTCGA+GGG 0.505239 1_3:+49899508 None:intergenic
ATTCAAACGAGTTGGCGATA+CGG 0.505943 1_3:-49899165 Msa0123000:CDS
TAGTCAGGCGAGAACGGATG+AGG 0.506765 1_3:+49899534 None:intergenic
ATGTGAACAATGGTGTGTAT+AGG 0.507417 1_3:-49898872 Msa0123000:intron
GTACGGTGGGCCCACGGGCA+TGG 0.510535 1_3:+49899269 None:intergenic
TGGTTCAGTTGATGATGATA+GGG 0.511787 1_3:+49898081 None:intergenic
CTGATAAATGTCACGCATGT+AGG 0.512267 1_3:+49898341 None:intergenic
GAATGGTTGCAAGACTTTGA+AGG 0.514214 1_3:-49899111 Msa0123000:CDS
TTACAAAACTTCTCTGGGGC+CGG 0.517177 1_3:-49899466 Msa0123000:CDS
GTTTATAGGCTGAGAAGTGG+TGG 0.517201 1_3:-49899086 Msa0123000:CDS
GAGACCACTCGGCGGTGGAC+CGG 0.518549 1_3:+49899310 None:intergenic
CGTTGGCCTGCCATGCCCGT+GGG 0.519717 1_3:-49899279 Msa0123000:CDS
GCCGGGAATGGACGGGTCGT+GGG 0.520755 1_3:-49899189 Msa0123000:CDS
GACGAGAAGACCCGGTGGGA+GGG 0.521075 1_3:+49899442 None:intergenic
ACGTTGGCCTGCCATGCCCG+TGG 0.522921 1_3:-49899280 Msa0123000:CDS
ATCTTATCCTTTAACTCGGG+TGG 0.523502 1_3:+49898924 None:intergenic
GGTGGTGAAAGATCCAAGTC+CGG 0.525217 1_3:+49898942 None:intergenic
TGGGGCCGGTCCCTCCCACC+GGG 0.526337 1_3:-49899452 Msa0123000:CDS
GGTCTGGAATATCCGCCGGT+GGG 0.527132 1_3:+49899353 None:intergenic
TGAGAGTACGGTGGGCCCAC+GGG 0.529134 1_3:+49899264 None:intergenic
ATGAGAGTACGGTGGGCCCA+CGG 0.532271 1_3:+49899263 None:intergenic
GCTTCCAAATTCCGATTCTC+CGG 0.533829 1_3:-49899329 Msa0123000:CDS
TTCCGCAACCGGAGACTCAC+CGG 0.534590 1_3:-49899563 Msa0123000:CDS
CGGTTGCGGAAAGTGGTTGT+CGG 0.536348 1_3:+49899575 None:intergenic
ATAATTGGTCTAATGCTCCC+TGG 0.536398 1_3:+49898154 None:intergenic
AGTCCGTGCACTGAAAGGCT+TGG 0.539933 1_3:-49899240 Msa0123000:CDS
TGGCATCGCCGGGAATGGAC+GGG 0.543073 1_3:-49899196 Msa0123000:CDS
CCGGTGTCAGTGGCATCGCC+GGG 0.544222 1_3:-49899206 Msa0123000:CDS
CTCATAGTCCGTGCACTGAA+AGG 0.547260 1_3:-49899245 Msa0123000:CDS
AAATGGGTTGGCCCATAACC+CGG 0.550836 1_3:-49898961 Msa0123000:CDS
CAGAGATGAAATTGAAAGTG+TGG 0.550937 1_3:+49897873 None:intergenic
AACGAGTTGGCGATACGGGT+CGG 0.551790 1_3:-49899160 Msa0123000:CDS
TCAAATTCTCGCTATTTGTG+TGG 0.552114 1_3:-49898483 Msa0123000:CDS
ACGCATGTAGGCATGTAGAT+TGG 0.554041 1_3:+49898353 None:intergenic
CTCGCTCCCTCCGACCCCAC+CGG 0.555197 1_3:-49899368 Msa0123000:CDS
AGGCATTGTTGTTGTTGTCG+AGG 0.555543 1_3:+49899507 None:intergenic
GAGTCTCCGGTTGCGGAAAG+TGG 0.555872 1_3:+49899568 None:intergenic
CTTCCAAGCCTTTCAGTGCA+CGG 0.556367 1_3:+49899237 None:intergenic
GTGGTGAAAGATCCAAGTCC+GGG 0.556634 1_3:+49898943 None:intergenic
AGGTGGAGACCACTCGGCGG+TGG 0.556945 1_3:+49899305 None:intergenic
CTAATGCTCCCTGGGTTGAG+AGG 0.557054 1_3:+49898163 None:intergenic
GAAATTCTTTGCATGCCTCA+TGG 0.561075 1_3:-49898112 Msa0123000:CDS
GGGACATAGTCAGGCGAGAA+CGG 0.562237 1_3:+49899528 None:intergenic
CCCGGCGATGCCACTGACAC+CGG 0.564808 1_3:+49899206 None:intergenic
GTTCCAGGCGGTGCGGACGG+TGG 0.565288 1_3:+49899418 None:intergenic
TCTTTGCATGCCTCATGGCA+GGG 0.567304 1_3:-49898107 Msa0123000:CDS
TTTATAGGCTGAGAAGTGGT+GGG 0.570077 1_3:-49899085 Msa0123000:CDS
GGAGTTCCAGGCGGTGCGGA+CGG 0.570604 1_3:+49899415 None:intergenic
GAGTCTTTGTTCCACAACAT+TGG 0.572372 1_3:+49899041 None:intergenic
AACAGAACTCAGTAGGGAAG+AGG 0.576414 1_3:+49899487 None:intergenic
GAGAATCGGAATTTGGAAGC+GGG 0.577136 1_3:+49899332 None:intergenic
GTCTGGAATATCCGCCGGTG+GGG 0.581278 1_3:+49899354 None:intergenic
GGAGAATCGGAATTTGGAAG+CGG 0.584387 1_3:+49899331 None:intergenic
AGCGGGTCTGGAATATCCGC+CGG 0.585759 1_3:+49899349 None:intergenic
CGATGCCACTGACACCGGTA+CGG 0.586344 1_3:+49899211 None:intergenic
GGGTCTGGAATATCCGCCGG+TGG 0.588168 1_3:+49899352 None:intergenic
CCATTCGCCTTATCCAAACT+CGG 0.588222 1_3:+49899128 None:intergenic
CCGAGTTTGGATAAGGCGAA+TGG 0.588244 1_3:-49899128 Msa0123000:CDS
GATCCACTGTGCCAATGTTG+TGG 0.590586 1_3:-49899052 Msa0123000:CDS
TCGTGGGAATTCAAACGAGT+TGG 0.593252 1_3:-49899173 Msa0123000:CDS
ACGTAGAGGTGGAGACCACT+CGG 0.594306 1_3:+49899299 None:intergenic
GTGCACGGACTATGAGAGTA+CGG 0.595929 1_3:+49899252 None:intergenic
CGAGTTAAAGGATAAGATTG+AGG 0.599820 1_3:-49898919 Msa0123000:CDS
GAAGTTTATAGGCTGAGAAG+TGG 0.602111 1_3:-49899089 Msa0123000:CDS
AAATGTAATCATGTACTGGC+TGG 0.607690 1_3:-49897935 Msa0123000:three_prime_UTR
AGATTCCGTACCGGTGTCAG+TGG 0.611699 1_3:-49899216 Msa0123000:CDS
TGACGAGAAGACCCGGTGGG+AGG 0.614676 1_3:+49899441 None:intergenic
ATGGCAGGCCAACGTAGAGG+TGG 0.617427 1_3:+49899288 None:intergenic
ACGGTGGTGACGAGAAGACC+CGG 0.617961 1_3:+49899434 None:intergenic
ATGGGCCAACCCATTTAACC+CGG 0.621534 1_3:+49898968 None:intergenic
CCAAGAAGCATATGATAAAG+CGG 0.622342 1_3:-49898550 Msa0123000:CDS
GCTCCCTCCGACCCCACCGG+CGG 0.625949 1_3:-49899365 Msa0123000:CDS
TAAAGGATAAGATTGAGGAA+TGG 0.626039 1_3:-49898914 Msa0123000:CDS
ACAAGGTGGTGTGAGGAAGA+GGG 0.626050 1_3:+49899608 None:intergenic
AGTGGTCTCCACCTCTACGT+TGG 0.627837 1_3:-49899296 Msa0123000:CDS
TACATACAGAACAGAACCAA+CGG 0.637946 1_3:+49898023 None:intergenic
AGGCTTGGAAGATTCCGTAC+CGG 0.641984 1_3:-49899225 Msa0123000:CDS
AGTCAGGCGAGAACGGATGA+GGG 0.643628 1_3:+49899535 None:intergenic
GGCATGGCAGGCCAACGTAG+AGG 0.643969 1_3:+49899285 None:intergenic
TTGCGGAAAGTGGTTGTCGG+AGG 0.645779 1_3:+49899578 None:intergenic
ACGGACTATGAGAGTACGGT+GGG 0.649294 1_3:+49899256 None:intergenic
AATGACGACAAGGTGGTGTG+AGG 0.649943 1_3:+49899601 None:intergenic
GTTCCACAACATTGGCACAG+TGG 0.661542 1_3:+49899049 None:intergenic
TTGTCGGAGGAATGACGACA+AGG 0.674643 1_3:+49899591 None:intergenic
ACGTGGAGTTCCAGGCGGTG+CGG 0.675896 1_3:+49899411 None:intergenic
TTCTCCGGTCCACCGCCGAG+TGG 0.686008 1_3:-49899314 Msa0123000:CDS
ATATATCCAAATGTGAACAA+TGG 0.688738 1_3:-49898882 Msa0123000:CDS
AGACATCATGAGCTGCCACG+TGG 0.697920 1_3:+49899394 None:intergenic
CTGCCACGTGGAGTTCCAGG+CGG 0.705558 1_3:+49899406 None:intergenic
GATAGGGATTCCCTGCCATG+AGG 0.706486 1_3:+49898097 None:intergenic
CACGGACTATGAGAGTACGG+TGG 0.713455 1_3:+49899255 None:intergenic
TGGTGACGAGAAGACCCGGT+GGG 0.717453 1_3:+49899438 None:intergenic
GTGGTGACGAGAAGACCCGG+TGG 0.722463 1_3:+49899437 None:intergenic
TCTGTTACAAAACTTCTCTG+GGG 0.722777 1_3:-49899470 Msa0123000:CDS
TCGGAGGAATGACGACAAGG+TGG 0.725756 1_3:+49899594 None:intergenic
GCACCGCCTGGAACTCCACG+TGG 0.732654 1_3:-49899409 Msa0123000:CDS
TAGAGGTGGAGACCACTCGG+CGG 0.783474 1_3:+49899302 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTCAATTGTTTAATTC+CGG - chr1_3:49898515-49898534 Msa0123000:CDS 15.0%
!!! TTGTAATTTTCAAGAAATTA+TGG - chr1_3:49899293-49899312 Msa0123000:CDS 15.0%
!! ATAATTCAATTGTTTAATTC+CGG - chr1_3:49898515-49898534 Msa0123000:CDS 15.0%
!!! TTGTAATTTTCAAGAAATTA+TGG - chr1_3:49899293-49899312 Msa0123000:CDS 15.0%
!! TAATTCAATTGTTTAATTCC+GGG - chr1_3:49898516-49898535 Msa0123000:CDS 20.0%
!!! TCATCATTGATTATTGAATT+GGG - chr1_3:49898885-49898904 Msa0123000:CDS 20.0%
!!! AATTTTCAAGAAATTATGGA+TGG - chr1_3:49899297-49899316 Msa0123000:CDS 20.0%
!! TAATTCAATTGTTTAATTCC+GGG - chr1_3:49898516-49898535 Msa0123000:CDS 20.0%
!!! TCATCATTGATTATTGAATT+GGG - chr1_3:49898885-49898904 Msa0123000:CDS 20.0%
!!! AATTTTCAAGAAATTATGGA+TGG - chr1_3:49899297-49899316 Msa0123000:CDS 20.0%
! ATATATCCAAATGTGAACAA+TGG - chr1_3:49898620-49898639 Msa0123000:intron 25.0%
!! GTCATCATTGATTATTGAAT+TGG - chr1_3:49898884-49898903 Msa0123000:CDS 25.0%
!! TGAACCAGTATTTGTTAAAT+AGG - chr1_3:49899437-49899456 Msa0123000:CDS 25.0%
! ATTGCCTATTTAACAAATAC+TGG + chr1_3:49899444-49899463 None:intergenic 25.0%
! TACTAAATGTAATCATGTAC+TGG - chr1_3:49899563-49899582 Msa0123000:CDS 25.0%
! ATATATCCAAATGTGAACAA+TGG - chr1_3:49898620-49898639 Msa0123000:intron 25.0%
!! GTCATCATTGATTATTGAAT+TGG - chr1_3:49898884-49898903 Msa0123000:CDS 25.0%
!! TGAACCAGTATTTGTTAAAT+AGG - chr1_3:49899437-49899456 Msa0123000:CDS 25.0%
! ATTGCCTATTTAACAAATAC+TGG + chr1_3:49899444-49899463 None:intergenic 25.0%
! TACTAAATGTAATCATGTAC+TGG - chr1_3:49899563-49899582 Msa0123000:CDS 25.0%
! TTTTGTAACAGAACTCAGTA+GGG + chr1_3:49898024-49898043 None:intergenic 30.0%
TTCTGTTACAAAACTTCTCT+GGG - chr1_3:49898031-49898050 Msa0123000:three_prime_UTR 30.0%
! AGACTTTGAAGGAAGTTTAT+AGG - chr1_3:49898402-49898421 Msa0123000:CDS 30.0%
CTCATTACATACAACATCTT+TGG + chr1_3:49898486-49898505 None:intergenic 30.0%
TTGTTTAATTCCGGGTTAAA+TGG - chr1_3:49898524-49898543 Msa0123000:CDS 30.0%
TGTTTAATTCCGGGTTAAAT+GGG - chr1_3:49898525-49898544 Msa0123000:CDS 30.0%
TCAATCTTATCCTTTAACTC+GGG + chr1_3:49898584-49898603 None:intergenic 30.0%
CTCAATCTTATCCTTTAACT+CGG + chr1_3:49898585-49898604 None:intergenic 30.0%
TAAAGGATAAGATTGAGGAA+TGG - chr1_3:49898588-49898607 Msa0123000:intron 30.0%
TGAAAATATTCGAGCATGTT+TGG + chr1_3:49898789-49898808 None:intergenic 30.0%
! GTTTTGTACATTAGACAAGT+TGG - chr1_3:49898985-49899004 Msa0123000:CDS 30.0%
GTCTGTTTACTACTTTGATT+CGG - chr1_3:49899068-49899087 Msa0123000:CDS 30.0%
ATACTCATACAACTTCTTCT+TGG + chr1_3:49899128-49899147 None:intergenic 30.0%
GCTTTGCTCAAAAAATGTTT+AGG - chr1_3:49899190-49899209 Msa0123000:CDS 30.0%
TTACAAGTATCTGCAACTTT+GGG + chr1_3:49899279-49899298 None:intergenic 30.0%
ATTACAAGTATCTGCAACTT+TGG + chr1_3:49899280-49899299 None:intergenic 30.0%
ATATGCAATTCAACGCTTAT+AGG - chr1_3:49899511-49899530 Msa0123000:CDS 30.0%
! TGCAAAAAAGGGGAAAATTT+TGG + chr1_3:49899602-49899621 None:intergenic 30.0%
! TTTTGTAACAGAACTCAGTA+GGG + chr1_3:49898024-49898043 None:intergenic 30.0%
TTCTGTTACAAAACTTCTCT+GGG - chr1_3:49898031-49898050 Msa0123000:three_prime_UTR 30.0%
! AGACTTTGAAGGAAGTTTAT+AGG - chr1_3:49898402-49898421 Msa0123000:CDS 30.0%
CTCATTACATACAACATCTT+TGG + chr1_3:49898486-49898505 None:intergenic 30.0%
TTGTTTAATTCCGGGTTAAA+TGG - chr1_3:49898524-49898543 Msa0123000:CDS 30.0%
TGTTTAATTCCGGGTTAAAT+GGG - chr1_3:49898525-49898544 Msa0123000:CDS 30.0%
TCAATCTTATCCTTTAACTC+GGG + chr1_3:49898584-49898603 None:intergenic 30.0%
CTCAATCTTATCCTTTAACT+CGG + chr1_3:49898585-49898604 None:intergenic 30.0%
TAAAGGATAAGATTGAGGAA+TGG - chr1_3:49898588-49898607 Msa0123000:intron 30.0%
TGAAAATATTCGAGCATGTT+TGG + chr1_3:49898789-49898808 None:intergenic 30.0%
! GTTTTGTACATTAGACAAGT+TGG - chr1_3:49898985-49899004 Msa0123000:CDS 30.0%
GTCTGTTTACTACTTTGATT+CGG - chr1_3:49899068-49899087 Msa0123000:CDS 30.0%
ATACTCATACAACTTCTTCT+TGG + chr1_3:49899128-49899147 None:intergenic 30.0%
GCTTTGCTCAAAAAATGTTT+AGG - chr1_3:49899190-49899209 Msa0123000:CDS 30.0%
TTACAAGTATCTGCAACTTT+GGG + chr1_3:49899279-49899298 None:intergenic 30.0%
ATTACAAGTATCTGCAACTT+TGG + chr1_3:49899280-49899299 None:intergenic 30.0%
ATATGCAATTCAACGCTTAT+AGG - chr1_3:49899511-49899530 Msa0123000:CDS 30.0%
! TGCAAAAAAGGGGAAAATTT+TGG + chr1_3:49899602-49899621 None:intergenic 30.0%
! GTTTTGTAACAGAACTCAGT+AGG + chr1_3:49898025-49898044 None:intergenic 35.0%
GTTCTGTTACAAAACTTCTC+TGG - chr1_3:49898030-49898049 Msa0123000:three_prime_UTR 35.0%
TCTGTTACAAAACTTCTCTG+GGG - chr1_3:49898032-49898051 Msa0123000:three_prime_UTR 35.0%
AATTAGTCCGAGTTTGGATA+AGG - chr1_3:49898367-49898386 Msa0123000:CDS 35.0%
CGAGTTAAAGGATAAGATTG+AGG - chr1_3:49898583-49898602 Msa0123000:intron 35.0%
TACACACCATTGTTCACATT+TGG + chr1_3:49898629-49898648 None:intergenic 35.0%
ATGTGAACAATGGTGTGTAT+AGG - chr1_3:49898630-49898649 Msa0123000:intron 35.0%
CGATGAGTTTGAGAAAATCA+TGG - chr1_3:49898691-49898710 Msa0123000:intron 35.0%
! GAAAATCATGGTCACACTTT+TGG - chr1_3:49898703-49898722 Msa0123000:intron 35.0%
ACGCTGAGTTAAACAAAATC+AGG + chr1_3:49898762-49898781 None:intergenic 35.0%
ATGATGAATGTCTACTCCAA+TGG + chr1_3:49898851-49898870 None:intergenic 35.0%
ATTGTTGCAATTTGCATTGC+AGG - chr1_3:49898912-49898931 Msa0123000:CDS 35.0%
! CCAAGAAGCATATGATAAAG+CGG - chr1_3:49898952-49898971 Msa0123000:CDS 35.0%
TCAAATTCTCGCTATTTGTG+TGG - chr1_3:49899019-49899038 Msa0123000:CDS 35.0%
! TCTGAAGTTGAAGGCATAAT+TGG + chr1_3:49899366-49899385 None:intergenic 35.0%
!! ATTTCATGCTCTGAAGTTGA+AGG + chr1_3:49899375-49899394 None:intergenic 35.0%
!! TGGTTCAGTTGATGATGATA+GGG + chr1_3:49899424-49899443 None:intergenic 35.0%
TGAACAAATCTTTCATCCGT+TGG - chr1_3:49899463-49899482 Msa0123000:CDS 35.0%
TACATACAGAACAGAACCAA+CGG + chr1_3:49899482-49899501 None:intergenic 35.0%
! AAATGTAATCATGTACTGGC+TGG - chr1_3:49899567-49899586 Msa0123000:CDS 35.0%
!! TGGTTTGAGTTGCAAAAAAG+GGG + chr1_3:49899612-49899631 None:intergenic 35.0%
!! GTGGTTTGAGTTGCAAAAAA+GGG + chr1_3:49899613-49899632 None:intergenic 35.0%
!! TGTGGTTTGAGTTGCAAAAA+AGG + chr1_3:49899614-49899633 None:intergenic 35.0%
CAGAGATGAAATTGAAAGTG+TGG + chr1_3:49899632-49899651 None:intergenic 35.0%
CACACTTTCAATTTCATCTC+TGG - chr1_3:49899630-49899649 Msa0123000:CDS 35.0%
! GTTTTGTAACAGAACTCAGT+AGG + chr1_3:49898025-49898044 None:intergenic 35.0%
GTTCTGTTACAAAACTTCTC+TGG - chr1_3:49898030-49898049 Msa0123000:three_prime_UTR 35.0%
TCTGTTACAAAACTTCTCTG+GGG - chr1_3:49898032-49898051 Msa0123000:three_prime_UTR 35.0%
AATTAGTCCGAGTTTGGATA+AGG - chr1_3:49898367-49898386 Msa0123000:CDS 35.0%
CGAGTTAAAGGATAAGATTG+AGG - chr1_3:49898583-49898602 Msa0123000:intron 35.0%
TACACACCATTGTTCACATT+TGG + chr1_3:49898629-49898648 None:intergenic 35.0%
ATGTGAACAATGGTGTGTAT+AGG - chr1_3:49898630-49898649 Msa0123000:intron 35.0%
CGATGAGTTTGAGAAAATCA+TGG - chr1_3:49898691-49898710 Msa0123000:intron 35.0%
! GAAAATCATGGTCACACTTT+TGG - chr1_3:49898703-49898722 Msa0123000:intron 35.0%
ACGCTGAGTTAAACAAAATC+AGG + chr1_3:49898762-49898781 None:intergenic 35.0%
ATGATGAATGTCTACTCCAA+TGG + chr1_3:49898851-49898870 None:intergenic 35.0%
ATTGTTGCAATTTGCATTGC+AGG - chr1_3:49898912-49898931 Msa0123000:CDS 35.0%
! CCAAGAAGCATATGATAAAG+CGG - chr1_3:49898952-49898971 Msa0123000:CDS 35.0%
TCAAATTCTCGCTATTTGTG+TGG - chr1_3:49899019-49899038 Msa0123000:CDS 35.0%
! TCTGAAGTTGAAGGCATAAT+TGG + chr1_3:49899366-49899385 None:intergenic 35.0%
!! ATTTCATGCTCTGAAGTTGA+AGG + chr1_3:49899375-49899394 None:intergenic 35.0%
!! TGGTTCAGTTGATGATGATA+GGG + chr1_3:49899424-49899443 None:intergenic 35.0%
TGAACAAATCTTTCATCCGT+TGG - chr1_3:49899463-49899482 Msa0123000:CDS 35.0%
TACATACAGAACAGAACCAA+CGG + chr1_3:49899482-49899501 None:intergenic 35.0%
! AAATGTAATCATGTACTGGC+TGG - chr1_3:49899567-49899586 Msa0123000:CDS 35.0%
!! TGGTTTGAGTTGCAAAAAAG+GGG + chr1_3:49899612-49899631 None:intergenic 35.0%
!! GTGGTTTGAGTTGCAAAAAA+GGG + chr1_3:49899613-49899632 None:intergenic 35.0%
!! TGTGGTTTGAGTTGCAAAAA+AGG + chr1_3:49899614-49899633 None:intergenic 35.0%
CAGAGATGAAATTGAAAGTG+TGG + chr1_3:49899632-49899651 None:intergenic 35.0%
CACACTTTCAATTTCATCTC+TGG - chr1_3:49899630-49899649 Msa0123000:CDS 35.0%
! ATTCAAACGAGTTGGCGATA+CGG - chr1_3:49898337-49898356 Msa0123000:intron 40.0%
GAATGGTTGCAAGACTTTGA+AGG - chr1_3:49898391-49898410 Msa0123000:CDS 40.0%
GAAGTTTATAGGCTGAGAAG+TGG - chr1_3:49898413-49898432 Msa0123000:CDS 40.0%
TTTATAGGCTGAGAAGTGGT+GGG - chr1_3:49898417-49898436 Msa0123000:CDS 40.0%
GAGTCTTTGTTCCACAACAT+TGG + chr1_3:49898464-49898483 None:intergenic 40.0%
TAATTCCGGGTTAAATGGGT+TGG - chr1_3:49898529-49898548 Msa0123000:CDS 40.0%
ATCTTATCCTTTAACTCGGG+TGG + chr1_3:49898581-49898600 None:intergenic 40.0%
!! ATGAGTTGGAAGCATCCAAA+GGG + chr1_3:49898827-49898846 None:intergenic 40.0%
!! TATGAGTTGGAAGCATCCAA+AGG + chr1_3:49898828-49898847 None:intergenic 40.0%
ATGCTTCCAACTCATACCAT+TGG - chr1_3:49898832-49898851 Msa0123000:intron 40.0%
TCTACTCCAATGGTATGAGT+TGG + chr1_3:49898841-49898860 None:intergenic 40.0%
CCGCTTTATCATATGCTTCT+TGG + chr1_3:49898955-49898974 None:intergenic 40.0%
CTGATAAATGTCACGCATGT+AGG + chr1_3:49899164-49899183 None:intergenic 40.0%
CTACATGCGTGACATTTATC+AGG - chr1_3:49899162-49899181 Msa0123000:CDS 40.0%
ATAGTATGTGTTTCGAGCCT+TGG - chr1_3:49899246-49899265 Msa0123000:CDS 40.0%
! TAATTGGTCTAATGCTCCCT+GGG + chr1_3:49899350-49899369 None:intergenic 40.0%
! ATAATTGGTCTAATGCTCCC+TGG + chr1_3:49899351-49899370 None:intergenic 40.0%
GAAATTCTTTGCATGCCTCA+TGG - chr1_3:49899390-49899409 Msa0123000:CDS 40.0%
!! CTGGTTCAGTTGATGATGAT+AGG + chr1_3:49899425-49899444 None:intergenic 40.0%
! ATTCAAACGAGTTGGCGATA+CGG - chr1_3:49898337-49898356 Msa0123000:intron 40.0%
GAATGGTTGCAAGACTTTGA+AGG - chr1_3:49898391-49898410 Msa0123000:CDS 40.0%
GAAGTTTATAGGCTGAGAAG+TGG - chr1_3:49898413-49898432 Msa0123000:CDS 40.0%
TTTATAGGCTGAGAAGTGGT+GGG - chr1_3:49898417-49898436 Msa0123000:CDS 40.0%
GAGTCTTTGTTCCACAACAT+TGG + chr1_3:49898464-49898483 None:intergenic 40.0%
TAATTCCGGGTTAAATGGGT+TGG - chr1_3:49898529-49898548 Msa0123000:CDS 40.0%
ATCTTATCCTTTAACTCGGG+TGG + chr1_3:49898581-49898600 None:intergenic 40.0%
!! ATGAGTTGGAAGCATCCAAA+GGG + chr1_3:49898827-49898846 None:intergenic 40.0%
!! TATGAGTTGGAAGCATCCAA+AGG + chr1_3:49898828-49898847 None:intergenic 40.0%
ATGCTTCCAACTCATACCAT+TGG - chr1_3:49898832-49898851 Msa0123000:intron 40.0%
TCTACTCCAATGGTATGAGT+TGG + chr1_3:49898841-49898860 None:intergenic 40.0%
CCGCTTTATCATATGCTTCT+TGG + chr1_3:49898955-49898974 None:intergenic 40.0%
CTGATAAATGTCACGCATGT+AGG + chr1_3:49899164-49899183 None:intergenic 40.0%
CTACATGCGTGACATTTATC+AGG - chr1_3:49899162-49899181 Msa0123000:CDS 40.0%
ATAGTATGTGTTTCGAGCCT+TGG - chr1_3:49899246-49899265 Msa0123000:CDS 40.0%
! TAATTGGTCTAATGCTCCCT+GGG + chr1_3:49899350-49899369 None:intergenic 40.0%
! ATAATTGGTCTAATGCTCCC+TGG + chr1_3:49899351-49899370 None:intergenic 40.0%
GAAATTCTTTGCATGCCTCA+TGG - chr1_3:49899390-49899409 Msa0123000:CDS 40.0%
!! CTGGTTCAGTTGATGATGAT+AGG + chr1_3:49899425-49899444 None:intergenic 40.0%
! GGCATTGTTGTTGTTGTCGA+GGG + chr1_3:49897997-49898016 None:intergenic 45.0%
! AGGCATTGTTGTTGTTGTCG+AGG + chr1_3:49897998-49898017 None:intergenic 45.0%
AACAGAACTCAGTAGGGAAG+AGG + chr1_3:49898018-49898037 None:intergenic 45.0%
!! TTACAAAACTTCTCTGGGGC+CGG - chr1_3:49898036-49898055 Msa0123000:three_prime_UTR 45.0%
GAGAATCGGAATTTGGAAGC+GGG + chr1_3:49898173-49898192 None:intergenic 45.0%
GGAGAATCGGAATTTGGAAG+CGG + chr1_3:49898174-49898193 None:intergenic 45.0%
GCTTCCAAATTCCGATTCTC+CGG - chr1_3:49898173-49898192 Msa0123000:CDS 45.0%
TCGTGGGAATTCAAACGAGT+TGG - chr1_3:49898329-49898348 Msa0123000:intron 45.0%
! TTCAAACGAGTTGGCGATAC+GGG - chr1_3:49898338-49898357 Msa0123000:intron 45.0%
CCATTCGCCTTATCCAAACT+CGG + chr1_3:49898377-49898396 None:intergenic 45.0%
GTTTATAGGCTGAGAAGTGG+TGG - chr1_3:49898416-49898435 Msa0123000:CDS 45.0%
AAGATCCAAGTCCGGGTTAT+GGG + chr1_3:49898555-49898574 None:intergenic 45.0%
AAAGATCCAAGTCCGGGTTA+TGG + chr1_3:49898556-49898575 None:intergenic 45.0%
TCTTTCACCACCCGAGTTAA+AGG - chr1_3:49898571-49898590 Msa0123000:CDS 45.0%
ACAACAGTTAGACCTCCCTT+TGG - chr1_3:49898809-49898828 Msa0123000:intron 45.0%
TGCAATTTGCATTGCAGGTG+TGG - chr1_3:49898917-49898936 Msa0123000:CDS 45.0%
GCAATTTGCATTGCAGGTGT+GGG - chr1_3:49898918-49898937 Msa0123000:CDS 45.0%
ACGCATGTAGGCATGTAGAT+TGG + chr1_3:49899152-49899171 None:intergenic 45.0%
! CAACTTTGGGAATCTGTCCA+AGG + chr1_3:49899266-49899285 None:intergenic 45.0%
! GGCATTGTTGTTGTTGTCGA+GGG + chr1_3:49897997-49898016 None:intergenic 45.0%
! AGGCATTGTTGTTGTTGTCG+AGG + chr1_3:49897998-49898017 None:intergenic 45.0%
AACAGAACTCAGTAGGGAAG+AGG + chr1_3:49898018-49898037 None:intergenic 45.0%
!! TTACAAAACTTCTCTGGGGC+CGG - chr1_3:49898036-49898055 Msa0123000:three_prime_UTR 45.0%
GAGAATCGGAATTTGGAAGC+GGG + chr1_3:49898173-49898192 None:intergenic 45.0%
GGAGAATCGGAATTTGGAAG+CGG + chr1_3:49898174-49898193 None:intergenic 45.0%
GCTTCCAAATTCCGATTCTC+CGG - chr1_3:49898173-49898192 Msa0123000:CDS 45.0%
TCGTGGGAATTCAAACGAGT+TGG - chr1_3:49898329-49898348 Msa0123000:intron 45.0%
! TTCAAACGAGTTGGCGATAC+GGG - chr1_3:49898338-49898357 Msa0123000:intron 45.0%
CCATTCGCCTTATCCAAACT+CGG + chr1_3:49898377-49898396 None:intergenic 45.0%
GTTTATAGGCTGAGAAGTGG+TGG - chr1_3:49898416-49898435 Msa0123000:CDS 45.0%
AAGATCCAAGTCCGGGTTAT+GGG + chr1_3:49898555-49898574 None:intergenic 45.0%
AAAGATCCAAGTCCGGGTTA+TGG + chr1_3:49898556-49898575 None:intergenic 45.0%
TCTTTCACCACCCGAGTTAA+AGG - chr1_3:49898571-49898590 Msa0123000:CDS 45.0%
ACAACAGTTAGACCTCCCTT+TGG - chr1_3:49898809-49898828 Msa0123000:intron 45.0%
TGCAATTTGCATTGCAGGTG+TGG - chr1_3:49898917-49898936 Msa0123000:CDS 45.0%
GCAATTTGCATTGCAGGTGT+GGG - chr1_3:49898918-49898937 Msa0123000:CDS 45.0%
ACGCATGTAGGCATGTAGAT+TGG + chr1_3:49899152-49899171 None:intergenic 45.0%
! CAACTTTGGGAATCTGTCCA+AGG + chr1_3:49899266-49899285 None:intergenic 45.0%
ACAAGGTGGTGTGAGGAAGA+GGG + chr1_3:49897897-49897916 None:intergenic 50.0%
AATGACGACAAGGTGGTGTG+AGG + chr1_3:49897904-49897923 None:intergenic 50.0%
TTGTCGGAGGAATGACGACA+AGG + chr1_3:49897914-49897933 None:intergenic 50.0%
AGAACGGATGAGGGAACTTC+CGG + chr1_3:49897961-49897980 None:intergenic 50.0%
TGTTGTCGAGGGACATAGTC+AGG + chr1_3:49897986-49898005 None:intergenic 50.0%
TGGACCGGAGAATCGGAATT+TGG + chr1_3:49898180-49898199 None:intergenic 50.0%
! ACGGACTATGAGAGTACGGT+GGG + chr1_3:49898249-49898268 None:intergenic 50.0%
! GTGCACGGACTATGAGAGTA+CGG + chr1_3:49898253-49898272 None:intergenic 50.0%
CTCATAGTCCGTGCACTGAA+AGG - chr1_3:49898257-49898276 Msa0123000:intron 50.0%
CTTCCAAGCCTTTCAGTGCA+CGG + chr1_3:49898268-49898287 None:intergenic 50.0%
AGGCTTGGAAGATTCCGTAC+CGG - chr1_3:49898277-49898296 Msa0123000:intron 50.0%
TCGGGCAATTAGTCCGAGTT+TGG - chr1_3:49898361-49898380 Msa0123000:CDS 50.0%
CCGAGTTTGGATAAGGCGAA+TGG - chr1_3:49898374-49898393 Msa0123000:CDS 50.0%
!! CTGAGAAGTGGTGGGTATGA+TGG - chr1_3:49898425-49898444 Msa0123000:CDS 50.0%
GATCCACTGTGCCAATGTTG+TGG - chr1_3:49898450-49898469 Msa0123000:CDS 50.0%
GTTCCACAACATTGGCACAG+TGG + chr1_3:49898456-49898475 None:intergenic 50.0%
ATGGGCCAACCCATTTAACC+CGG + chr1_3:49898537-49898556 None:intergenic 50.0%
!! AAATGGGTTGGCCCATAACC+CGG - chr1_3:49898541-49898560 Msa0123000:CDS 50.0%
GTGGTGAAAGATCCAAGTCC+GGG + chr1_3:49898562-49898581 None:intergenic 50.0%
GGTGGTGAAAGATCCAAGTC+CGG + chr1_3:49898563-49898582 None:intergenic 50.0%
!! AGTTGGAAGCATCCAAAGGG+AGG + chr1_3:49898824-49898843 None:intergenic 50.0%
! ACCCTTTTTCCTCTCAACCC+AGG - chr1_3:49899330-49899349 Msa0123000:CDS 50.0%
! CCCTGGGTTGAGAGGAAAAA+GGG + chr1_3:49899334-49899353 None:intergenic 50.0%
! CCCTTTTTCCTCTCAACCCA+GGG - chr1_3:49899331-49899350 Msa0123000:CDS 50.0%
! TCCCTGGGTTGAGAGGAAAA+AGG + chr1_3:49899335-49899354 None:intergenic 50.0%
TTCTTTGCATGCCTCATGGC+AGG - chr1_3:49899394-49899413 Msa0123000:CDS 50.0%
TCTTTGCATGCCTCATGGCA+GGG - chr1_3:49899395-49899414 Msa0123000:CDS 50.0%
ACAAGGTGGTGTGAGGAAGA+GGG + chr1_3:49897897-49897916 None:intergenic 50.0%
AATGACGACAAGGTGGTGTG+AGG + chr1_3:49897904-49897923 None:intergenic 50.0%
TTGTCGGAGGAATGACGACA+AGG + chr1_3:49897914-49897933 None:intergenic 50.0%
AGAACGGATGAGGGAACTTC+CGG + chr1_3:49897961-49897980 None:intergenic 50.0%
TGTTGTCGAGGGACATAGTC+AGG + chr1_3:49897986-49898005 None:intergenic 50.0%
TGGACCGGAGAATCGGAATT+TGG + chr1_3:49898180-49898199 None:intergenic 50.0%
! ACGGACTATGAGAGTACGGT+GGG + chr1_3:49898249-49898268 None:intergenic 50.0%
! GTGCACGGACTATGAGAGTA+CGG + chr1_3:49898253-49898272 None:intergenic 50.0%
CTCATAGTCCGTGCACTGAA+AGG - chr1_3:49898257-49898276 Msa0123000:intron 50.0%
CTTCCAAGCCTTTCAGTGCA+CGG + chr1_3:49898268-49898287 None:intergenic 50.0%
AGGCTTGGAAGATTCCGTAC+CGG - chr1_3:49898277-49898296 Msa0123000:intron 50.0%
TCGGGCAATTAGTCCGAGTT+TGG - chr1_3:49898361-49898380 Msa0123000:CDS 50.0%
CCGAGTTTGGATAAGGCGAA+TGG - chr1_3:49898374-49898393 Msa0123000:CDS 50.0%
!! CTGAGAAGTGGTGGGTATGA+TGG - chr1_3:49898425-49898444 Msa0123000:CDS 50.0%
GATCCACTGTGCCAATGTTG+TGG - chr1_3:49898450-49898469 Msa0123000:CDS 50.0%
GTTCCACAACATTGGCACAG+TGG + chr1_3:49898456-49898475 None:intergenic 50.0%
ATGGGCCAACCCATTTAACC+CGG + chr1_3:49898537-49898556 None:intergenic 50.0%
!! AAATGGGTTGGCCCATAACC+CGG - chr1_3:49898541-49898560 Msa0123000:CDS 50.0%
GTGGTGAAAGATCCAAGTCC+GGG + chr1_3:49898562-49898581 None:intergenic 50.0%
GGTGGTGAAAGATCCAAGTC+CGG + chr1_3:49898563-49898582 None:intergenic 50.0%
!! AGTTGGAAGCATCCAAAGGG+AGG + chr1_3:49898824-49898843 None:intergenic 50.0%
! ACCCTTTTTCCTCTCAACCC+AGG - chr1_3:49899330-49899349 Msa0123000:CDS 50.0%
! CCCTGGGTTGAGAGGAAAAA+GGG + chr1_3:49899334-49899353 None:intergenic 50.0%
! CCCTTTTTCCTCTCAACCCA+GGG - chr1_3:49899331-49899350 Msa0123000:CDS 50.0%
! TCCCTGGGTTGAGAGGAAAA+AGG + chr1_3:49899335-49899354 None:intergenic 50.0%
TTCTTTGCATGCCTCATGGC+AGG - chr1_3:49899394-49899413 Msa0123000:CDS 50.0%
TCTTTGCATGCCTCATGGCA+GGG - chr1_3:49899395-49899414 Msa0123000:CDS 50.0%
GACAAGGTGGTGTGAGGAAG+AGG + chr1_3:49897898-49897917 None:intergenic 55.0%
TCGGAGGAATGACGACAAGG+TGG + chr1_3:49897911-49897930 None:intergenic 55.0%
TTGCGGAAAGTGGTTGTCGG+AGG + chr1_3:49897927-49897946 None:intergenic 55.0%
CGGTTGCGGAAAGTGGTTGT+CGG + chr1_3:49897930-49897949 None:intergenic 55.0%
CGACAACCACTTTCCGCAAC+CGG - chr1_3:49897928-49897947 Msa0123000:three_prime_UTR 55.0%
AGTCAGGCGAGAACGGATGA+GGG + chr1_3:49897970-49897989 None:intergenic 55.0%
TAGTCAGGCGAGAACGGATG+AGG + chr1_3:49897971-49897990 None:intergenic 55.0%
GGGACATAGTCAGGCGAGAA+CGG + chr1_3:49897977-49897996 None:intergenic 55.0%
AGACATCATGAGCTGCCACG+TGG + chr1_3:49898111-49898130 None:intergenic 55.0%
TCGGAATTTGGAAGCGGGTC+TGG + chr1_3:49898168-49898187 None:intergenic 55.0%
ACGTAGAGGTGGAGACCACT+CGG + chr1_3:49898206-49898225 None:intergenic 55.0%
AGTGGTCTCCACCTCTACGT+TGG - chr1_3:49898206-49898225 Msa0123000:CDS 55.0%
! CACGGACTATGAGAGTACGG+TGG + chr1_3:49898250-49898269 None:intergenic 55.0%
AGTCCGTGCACTGAAAGGCT+TGG - chr1_3:49898262-49898281 Msa0123000:intron 55.0%
! AGATTCCGTACCGGTGTCAG+TGG - chr1_3:49898286-49898305 Msa0123000:intron 55.0%
! AACGAGTTGGCGATACGGGT+CGG - chr1_3:49898342-49898361 Msa0123000:CDS 55.0%
! CTAATGCTCCCTGGGTTGAG+AGG + chr1_3:49899342-49899361 None:intergenic 55.0%
GATAGGGATTCCCTGCCATG+AGG + chr1_3:49899408-49899427 None:intergenic 55.0%
GACAAGGTGGTGTGAGGAAG+AGG + chr1_3:49897898-49897917 None:intergenic 55.0%
TCGGAGGAATGACGACAAGG+TGG + chr1_3:49897911-49897930 None:intergenic 55.0%
TTGCGGAAAGTGGTTGTCGG+AGG + chr1_3:49897927-49897946 None:intergenic 55.0%
CGGTTGCGGAAAGTGGTTGT+CGG + chr1_3:49897930-49897949 None:intergenic 55.0%
CGACAACCACTTTCCGCAAC+CGG - chr1_3:49897928-49897947 Msa0123000:three_prime_UTR 55.0%
AGTCAGGCGAGAACGGATGA+GGG + chr1_3:49897970-49897989 None:intergenic 55.0%
TAGTCAGGCGAGAACGGATG+AGG + chr1_3:49897971-49897990 None:intergenic 55.0%
GGGACATAGTCAGGCGAGAA+CGG + chr1_3:49897977-49897996 None:intergenic 55.0%
AGACATCATGAGCTGCCACG+TGG + chr1_3:49898111-49898130 None:intergenic 55.0%
TCGGAATTTGGAAGCGGGTC+TGG + chr1_3:49898168-49898187 None:intergenic 55.0%
ACGTAGAGGTGGAGACCACT+CGG + chr1_3:49898206-49898225 None:intergenic 55.0%
AGTGGTCTCCACCTCTACGT+TGG - chr1_3:49898206-49898225 Msa0123000:CDS 55.0%
! CACGGACTATGAGAGTACGG+TGG + chr1_3:49898250-49898269 None:intergenic 55.0%
AGTCCGTGCACTGAAAGGCT+TGG - chr1_3:49898262-49898281 Msa0123000:intron 55.0%
! AGATTCCGTACCGGTGTCAG+TGG - chr1_3:49898286-49898305 Msa0123000:intron 55.0%
! AACGAGTTGGCGATACGGGT+CGG - chr1_3:49898342-49898361 Msa0123000:CDS 55.0%
! CTAATGCTCCCTGGGTTGAG+AGG + chr1_3:49899342-49899361 None:intergenic 55.0%
GATAGGGATTCCCTGCCATG+AGG + chr1_3:49899408-49899427 None:intergenic 55.0%
GAGTCTCCGGTTGCGGAAAG+TGG + chr1_3:49897937-49897956 None:intergenic 60.0%
TTCCGCAACCGGAGACTCAC+CGG - chr1_3:49897939-49897958 Msa0123000:three_prime_UTR 60.0%
TTCCGGTGAGTCTCCGGTTG+CGG + chr1_3:49897944-49897963 None:intergenic 60.0%
GGGAACTTCCGGTGAGTCTC+CGG + chr1_3:49897950-49897969 None:intergenic 60.0%
! TGGTGACGAGAAGACCCGGT+GGG + chr1_3:49898067-49898086 None:intergenic 60.0%
! ACGGTGGTGACGAGAAGACC+CGG + chr1_3:49898071-49898090 None:intergenic 60.0%
! GTCTGGAATATCCGCCGGTG+GGG + chr1_3:49898151-49898170 None:intergenic 60.0%
! GGTCTGGAATATCCGCCGGT+GGG + chr1_3:49898152-49898171 None:intergenic 60.0%
! AGCGGGTCTGGAATATCCGC+CGG + chr1_3:49898156-49898175 None:intergenic 60.0%
TAGAGGTGGAGACCACTCGG+CGG + chr1_3:49898203-49898222 None:intergenic 60.0%
ATGGCAGGCCAACGTAGAGG+TGG + chr1_3:49898217-49898236 None:intergenic 60.0%
! ATGAGAGTACGGTGGGCCCA+CGG + chr1_3:49898242-49898261 None:intergenic 60.0%
CGATGCCACTGACACCGGTA+CGG + chr1_3:49898294-49898313 None:intergenic 60.0%
! ACGAGTTGGCGATACGGGTC+GGG - chr1_3:49898343-49898362 Msa0123000:CDS 60.0%
GTTGGCCCATAACCCGGACT+TGG - chr1_3:49898547-49898566 Msa0123000:CDS 60.0%
GAGTCTCCGGTTGCGGAAAG+TGG + chr1_3:49897937-49897956 None:intergenic 60.0%
TTCCGCAACCGGAGACTCAC+CGG - chr1_3:49897939-49897958 Msa0123000:three_prime_UTR 60.0%
TTCCGGTGAGTCTCCGGTTG+CGG + chr1_3:49897944-49897963 None:intergenic 60.0%
GGGAACTTCCGGTGAGTCTC+CGG + chr1_3:49897950-49897969 None:intergenic 60.0%
! TGGTGACGAGAAGACCCGGT+GGG + chr1_3:49898067-49898086 None:intergenic 60.0%
! ACGGTGGTGACGAGAAGACC+CGG + chr1_3:49898071-49898090 None:intergenic 60.0%
! GTCTGGAATATCCGCCGGTG+GGG + chr1_3:49898151-49898170 None:intergenic 60.0%
! GGTCTGGAATATCCGCCGGT+GGG + chr1_3:49898152-49898171 None:intergenic 60.0%
! AGCGGGTCTGGAATATCCGC+CGG + chr1_3:49898156-49898175 None:intergenic 60.0%
TAGAGGTGGAGACCACTCGG+CGG + chr1_3:49898203-49898222 None:intergenic 60.0%
ATGGCAGGCCAACGTAGAGG+TGG + chr1_3:49898217-49898236 None:intergenic 60.0%
! ATGAGAGTACGGTGGGCCCA+CGG + chr1_3:49898242-49898261 None:intergenic 60.0%
CGATGCCACTGACACCGGTA+CGG + chr1_3:49898294-49898313 None:intergenic 60.0%
! ACGAGTTGGCGATACGGGTC+GGG - chr1_3:49898343-49898362 Msa0123000:CDS 60.0%
GTTGGCCCATAACCCGGACT+TGG - chr1_3:49898547-49898566 Msa0123000:CDS 60.0%
GACGAGAAGACCCGGTGGGA+GGG + chr1_3:49898063-49898082 None:intergenic 65.0%
TGACGAGAAGACCCGGTGGG+AGG + chr1_3:49898064-49898083 None:intergenic 65.0%
! GTGGTGACGAGAAGACCCGG+TGG + chr1_3:49898068-49898087 None:intergenic 65.0%
ACGTGGAGTTCCAGGCGGTG+CGG + chr1_3:49898094-49898113 None:intergenic 65.0%
CTGCCACGTGGAGTTCCAGG+CGG + chr1_3:49898099-49898118 None:intergenic 65.0%
GAGCTGCCACGTGGAGTTCC+AGG + chr1_3:49898102-49898121 None:intergenic 65.0%
GGAATATCCGCCGGTGGGGT+CGG + chr1_3:49898147-49898166 None:intergenic 65.0%
! GGGTCTGGAATATCCGCCGG+TGG + chr1_3:49898153-49898172 None:intergenic 65.0%
TCGGCGGTGGACCGGAGAAT+CGG + chr1_3:49898187-49898206 None:intergenic 65.0%
GGCATGGCAGGCCAACGTAG+AGG + chr1_3:49898220-49898239 None:intergenic 65.0%
! TGAGAGTACGGTGGGCCCAC+GGG + chr1_3:49898241-49898260 None:intergenic 65.0%
! ACCGGTGTCAGTGGCATCGC+CGG - chr1_3:49898295-49898314 Msa0123000:intron 65.0%
GTCAGTGGCATCGCCGGGAA+TGG - chr1_3:49898301-49898320 Msa0123000:intron 65.0%
GTGGCATCGCCGGGAATGGA+CGG - chr1_3:49898305-49898324 Msa0123000:intron 65.0%
TGGCATCGCCGGGAATGGAC+GGG - chr1_3:49898306-49898325 Msa0123000:intron 65.0%
TCCCACGACCCGTCCATTCC+CGG + chr1_3:49898317-49898336 None:intergenic 65.0%
GACGAGAAGACCCGGTGGGA+GGG + chr1_3:49898063-49898082 None:intergenic 65.0%
TGACGAGAAGACCCGGTGGG+AGG + chr1_3:49898064-49898083 None:intergenic 65.0%
! GTGGTGACGAGAAGACCCGG+TGG + chr1_3:49898068-49898087 None:intergenic 65.0%
ACGTGGAGTTCCAGGCGGTG+CGG + chr1_3:49898094-49898113 None:intergenic 65.0%
CTGCCACGTGGAGTTCCAGG+CGG + chr1_3:49898099-49898118 None:intergenic 65.0%
GAGCTGCCACGTGGAGTTCC+AGG + chr1_3:49898102-49898121 None:intergenic 65.0%
GGAATATCCGCCGGTGGGGT+CGG + chr1_3:49898147-49898166 None:intergenic 65.0%
! GGGTCTGGAATATCCGCCGG+TGG + chr1_3:49898153-49898172 None:intergenic 65.0%
TCGGCGGTGGACCGGAGAAT+CGG + chr1_3:49898187-49898206 None:intergenic 65.0%
GGCATGGCAGGCCAACGTAG+AGG + chr1_3:49898220-49898239 None:intergenic 65.0%
! TGAGAGTACGGTGGGCCCAC+GGG + chr1_3:49898241-49898260 None:intergenic 65.0%
! ACCGGTGTCAGTGGCATCGC+CGG - chr1_3:49898295-49898314 Msa0123000:intron 65.0%
GTCAGTGGCATCGCCGGGAA+TGG - chr1_3:49898301-49898320 Msa0123000:intron 65.0%
GTGGCATCGCCGGGAATGGA+CGG - chr1_3:49898305-49898324 Msa0123000:intron 65.0%
TGGCATCGCCGGGAATGGAC+GGG - chr1_3:49898306-49898325 Msa0123000:intron 65.0%
TCCCACGACCCGTCCATTCC+CGG + chr1_3:49898317-49898336 None:intergenic 65.0%
GAAGACCCGGTGGGAGGGAC+CGG + chr1_3:49898058-49898077 None:intergenic 70.0%
GGAGTTCCAGGCGGTGCGGA+CGG + chr1_3:49898090-49898109 None:intergenic 70.0%
GCACCGCCTGGAACTCCACG+TGG - chr1_3:49898093-49898112 Msa0123000:CDS 70.0%
TATCCGCCGGTGGGGTCGGA+GGG + chr1_3:49898143-49898162 None:intergenic 70.0%
ATATCCGCCGGTGGGGTCGG+AGG + chr1_3:49898144-49898163 None:intergenic 70.0%
TTCTCCGGTCCACCGCCGAG+TGG - chr1_3:49898188-49898207 Msa0123000:CDS 70.0%
GAGACCACTCGGCGGTGGAC+CGG + chr1_3:49898195-49898214 None:intergenic 70.0%
AGGTGGAGACCACTCGGCGG+TGG + chr1_3:49898200-49898219 None:intergenic 70.0%
! ACGTTGGCCTGCCATGCCCG+TGG - chr1_3:49898222-49898241 Msa0123000:CDS 70.0%
! CGTTGGCCTGCCATGCCCGT+GGG - chr1_3:49898223-49898242 Msa0123000:CDS 70.0%
CCCGGCGATGCCACTGACAC+CGG + chr1_3:49898299-49898318 None:intergenic 70.0%
! CCGGTGTCAGTGGCATCGCC+GGG - chr1_3:49898296-49898315 Msa0123000:intron 70.0%
GCCGGGAATGGACGGGTCGT+GGG - chr1_3:49898313-49898332 Msa0123000:intron 70.0%
GAAGACCCGGTGGGAGGGAC+CGG + chr1_3:49898058-49898077 None:intergenic 70.0%
GGAGTTCCAGGCGGTGCGGA+CGG + chr1_3:49898090-49898109 None:intergenic 70.0%
GCACCGCCTGGAACTCCACG+TGG - chr1_3:49898093-49898112 Msa0123000:CDS 70.0%
TATCCGCCGGTGGGGTCGGA+GGG + chr1_3:49898143-49898162 None:intergenic 70.0%
ATATCCGCCGGTGGGGTCGG+AGG + chr1_3:49898144-49898163 None:intergenic 70.0%
TTCTCCGGTCCACCGCCGAG+TGG - chr1_3:49898188-49898207 Msa0123000:CDS 70.0%
GAGACCACTCGGCGGTGGAC+CGG + chr1_3:49898195-49898214 None:intergenic 70.0%
AGGTGGAGACCACTCGGCGG+TGG + chr1_3:49898200-49898219 None:intergenic 70.0%
! ACGTTGGCCTGCCATGCCCG+TGG - chr1_3:49898222-49898241 Msa0123000:CDS 70.0%
! CGTTGGCCTGCCATGCCCGT+GGG - chr1_3:49898223-49898242 Msa0123000:CDS 70.0%
CCCGGCGATGCCACTGACAC+CGG + chr1_3:49898299-49898318 None:intergenic 70.0%
! CCGGTGTCAGTGGCATCGCC+GGG - chr1_3:49898296-49898315 Msa0123000:intron 70.0%
GCCGGGAATGGACGGGTCGT+GGG - chr1_3:49898313-49898332 Msa0123000:intron 70.0%
TCACCACCGTCCGCACCGCC+TGG - chr1_3:49898081-49898100 Msa0123000:CDS 75.0%
GTTCCAGGCGGTGCGGACGG+TGG + chr1_3:49898087-49898106 None:intergenic 75.0%
CTCGCTCCCTCCGACCCCAC+CGG - chr1_3:49898134-49898153 Msa0123000:CDS 75.0%
GTACGGTGGGCCCACGGGCA+TGG + chr1_3:49898236-49898255 None:intergenic 75.0%
CGCCGGGAATGGACGGGTCG+TGG - chr1_3:49898312-49898331 Msa0123000:intron 75.0%
TCACCACCGTCCGCACCGCC+TGG - chr1_3:49898081-49898100 Msa0123000:CDS 75.0%
GTTCCAGGCGGTGCGGACGG+TGG + chr1_3:49898087-49898106 None:intergenic 75.0%
CTCGCTCCCTCCGACCCCAC+CGG - chr1_3:49898134-49898153 Msa0123000:CDS 75.0%
GTACGGTGGGCCCACGGGCA+TGG + chr1_3:49898236-49898255 None:intergenic 75.0%
CGCCGGGAATGGACGGGTCG+TGG - chr1_3:49898312-49898331 Msa0123000:intron 75.0%
! CTGGGGCCGGTCCCTCCCAC+CGG - chr1_3:49898049-49898068 Msa0123000:exon 80.0%
! TGGGGCCGGTCCCTCCCACC+GGG - chr1_3:49898050-49898069 Msa0123000:exon 80.0%
! GCTCCCTCCGACCCCACCGG+CGG - chr1_3:49898137-49898156 Msa0123000:CDS 80.0%
! GGTGGGCCCACGGGCATGGC+AGG + chr1_3:49898232-49898251 None:intergenic 80.0%
! CTGGGGCCGGTCCCTCCCAC+CGG - chr1_3:49898049-49898068 Msa0123000:exon 80.0%
! TGGGGCCGGTCCCTCCCACC+GGG - chr1_3:49898050-49898069 Msa0123000:exon 80.0%
! GCTCCCTCCGACCCCACCGG+CGG - chr1_3:49898137-49898156 Msa0123000:CDS 80.0%
! GGTGGGCCCACGGGCATGGC+AGG + chr1_3:49898232-49898251 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 49897841 49899683 49897841 ID=Msa0123000;Name=Msa0123000
chr1_3 mRNA 49897841 49899683 49897841 ID=Msa0123000-mRNA-1;Parent=Msa0123000;Name=Msa0123000-mRNA-1;_AED=0.03;_eAED=0.03;_QI=20|1|1|1|1|1|3|225|408
chr1_3 exon 49897841 49898251 49897841 ID=Msa0123000-mRNA-1:exon:15236;Parent=Msa0123000-mRNA-1
chr1_3 exon 49898341 49898590 49898341 ID=Msa0123000-mRNA-1:exon:15235;Parent=Msa0123000-mRNA-1
chr1_3 exon 49898873 49899683 49898873 ID=Msa0123000-mRNA-1:exon:15234;Parent=Msa0123000-mRNA-1
chr1_3 five_prime_UTR 49899664 49899683 49899664 ID=Msa0123000-mRNA-1:five_prime_utr;Parent=Msa0123000-mRNA-1
chr1_3 CDS 49898873 49899663 49898873 ID=Msa0123000-mRNA-1:cds;Parent=Msa0123000-mRNA-1
chr1_3 CDS 49898341 49898590 49898341 ID=Msa0123000-mRNA-1:cds;Parent=Msa0123000-mRNA-1
chr1_3 CDS 49898066 49898251 49898066 ID=Msa0123000-mRNA-1:cds;Parent=Msa0123000-mRNA-1
chr1_3 three_prime_UTR 49897841 49898065 49897841 ID=Msa0123000-mRNA-1:three_prime_utr;Parent=Msa0123000-mRNA-1
Gene Sequence

>Msa0123000

ATGTCACAAGAAATGTCGATGTTGTGCGCTTCTCCCTCTTCCTCACACCACCTTGTCGTCATTCCTCCGACAACCACTTTCCGCAACCGGAGACTCACCGGAAGTTCCCTCATCCGTTCTCGCCTGACTATGTCCCTCGACAACAACAACAATGCCTCTTCCCTACTGAGTTCTGTTACAAAACTTCTCTGGGGCCGGTCCCTCCCACCGGGTCTTCTCGTCACCACCGTCCGCACCGCCTGGAACTCCACGTGGCAGCTCATGATGTCTCAGCTCGCTCCCTCCGACCCCACCGGCGGATATTCCAGACCCGCTTCCAAATTCCGATTCTCCGGTCCACCGCCGAGTGGTCTCCACCTCTACGTTGGCCTGCCATGCCCGTGGGCCCACCGTACTCTCATAGTCCGTGCACTGAAAGGCTTGGAAGATTCCGTACCGGTGTCAGTGGCATCGCCGGGAATGGACGGGTCGTGGGAATTCAAACGAGTTGGCGATACGGGTCGGGCAATTAGTCCGAGTTTGGATAAGGCGAATGGTTGCAAGACTTTGAAGGAAGTTTATAGGCTGAGAAGTGGTGGGTATGATGGAAGATCCACTGTGCCAATGTTGTGGAACAAAGACTCCAAAGATGTTGTATGTAATGAGAGTTATGATATAATTCAATTGTTTAATTCCGGGTTAAATGGGTTGGCCCATAACCCGGACTTGGATCTTTCACCACCCGAGTTAAAGGATAAGATTGAGGAATGGTATCAAGTGATATATCCAAATGTGAACAATGGTGTGTATAGGTGTGGGTTTGCACAGAGCCAAGAAGCATATGATAAAGCGGTGAATGAGTTGTTTTGTACATTAGACAAGTTGGAGAATCACTTATCAAATTCTCGCTATTTGTGTGGAGACGCGCTCACACTTGTTGATATATGTCTGTTTACTACTTTGATTCGGTTTGATATTGCTTATAATGTTTTGTTTAAATGCACCAAGAAGAAGTTGTATGAGTATACCAATCTACATGCCTACATGCGTGACATTTATCAGATTCCCAAAGTTGCAGATACTTGTAATTTTCAAGAAATTATGGATGGTTACTACAAAACCCTTTTTCCTCTCAACCCAGGGAGCATTAGACCAATTATGCCTTCAACTTCAGAGCATGAAATTCTTTGCATGCCTCATGGCAGGGAATCCCTATCATCATCAACTGAACCAGTATTTGTTAAATAG
Protein sequence

>Msa0123000

MSQEMSMLCASPSSSHHLVVIPPTTTFRNRRLTGSSLIRSRLTMSLDNNNNASSLLSSVTKLLWGRSLPPGLLVTTVRTAWNSTWQLMMSQLAPSDPTGGYSRPASKFRFSGPPPSGLHLYVGLPCPWAHRTLIVRALKGLEDSVPVSVASPGMDGSWEFKRVGDTGRAISPSLDKANGCKTLKEVYRLRSGGYDGRSTVPMLWNKDSKDVVCNESYDIIQLFNSGLNGLAHNPDLDLSPPELKDKIEEWYQVIYPNVNNGVYRCGFAQSQEAYDKAVNELFCTLDKLENHLSNSRYLCGDALTLVDICLFTTLIRFDIAYNVLFKCTKKKLYEYTNLHAYMRDIYQIPKVADTCNFQEIMDGYYKTLFPLNPGSIRPIMPSTSEHEILCMPHGRESLSSSTEPVFVK*