AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0075160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0075160 MtrunA17_Chr1g0183331 92.944 411 24 2 1 406 1 411 0.0 755
Msa0075160 MtrunA17_Chr4g0043651 41.265 332 172 5 84 398 30 355 1.71e-78 246
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0075160 AT5G44000.1 68.182 352 102 3 59 401 44 394 6.25e-179 504
Msa0075160 AT4G19880.1 40.058 342 182 5 73 397 20 355 8.44e-75 237
Msa0075160 AT5G45020.1 39.039 333 176 6 85 398 1 325 6.33e-72 229
Msa0075160 AT5G45020.2 39.039 333 176 6 85 398 1 325 6.33e-72 229
Msa0075160 AT4G19880.2 37.228 368 182 6 73 397 20 381 4.19e-69 223
Msa0075160 AT5G44990.2 39.432 317 169 6 98 397 11 321 6.85e-69 221
Msa0075160 AT5G44990.1 39.432 317 169 6 98 397 11 321 6.85e-69 221
Msa0075160 AT5G44990.3 44.000 225 122 1 173 397 18 238 2.42e-59 194
Msa0075160 AT4G19880.3 40.613 261 136 4 73 316 20 278 8.12e-56 186
Msa0075160 AT5G44990.4 37.175 269 141 7 98 349 11 268 7.91e-53 177

Find 166 sgRNAs with CRISPR-Local

Find 382 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTTAATTCCGGGTTAAA+TGG 0.145587 1_2:-50244261 Msa0075160:CDS
CCGCTTTATCATATGCTTCT+TGG 0.182145 1_2:+50243833 None:intergenic
TGAACCAGTATTTGTTAAAT+AGG 0.222094 1_2:-50243348 Msa0075160:exon
AGACTTTGAAGGAAGTTTAT+AGG 0.256685 1_2:-50244383 Msa0075160:CDS
ATAATTCAATTGTTTAATTC+CGG 0.258778 1_2:-50244270 Msa0075160:CDS
CTCATTACATACAACATCTT+TGG 0.263092 1_2:+50244302 None:intergenic
ATCTGCAATTCAACGTTTAT+AGG 0.266646 1_2:-50243274 Msa0075160:three_prime_UTR
ATTACAAGTATCTGCAACTT+TGG 0.276080 1_2:+50243508 None:intergenic
TGCAAAGAAAGTGAAAATTT+TGG 0.281171 1_2:+50243186 None:intergenic
TCTTTCACCACCCGAGTTAA+AGG 0.284660 1_2:-50244214 Msa0075160:CDS
GTTCTGTTACAAAACTTCTC+TGG 0.315841 1_2:-50244755 Msa0075160:CDS
ATTGCCTATTTAACAAATAC+TGG 0.329847 1_2:+50243344 None:intergenic
CACACTTTCAATTTCATCTC+TGG 0.329934 1_2:-50243155 Msa0075160:three_prime_UTR
TGGACCGGAAAATCGGAATT+TGG 0.330455 1_2:+50244608 None:intergenic
TAATTCAATTGTTTAATTCC+GGG 0.335485 1_2:-50244269 Msa0075160:CDS
GAGCTGCCACGTGGAGTTCC+AGG 0.336140 1_2:+50244686 None:intergenic
TCGGAATTTGGAAGCGGGTC+TGG 0.345630 1_2:+50244620 None:intergenic
TCTGAAGTTGAAGGCATAAT+TGG 0.346959 1_2:+50243422 None:intergenic
TCGGGCAATTAGTCCGAGTT+TGG 0.357269 1_2:-50244424 Msa0075160:CDS
ATACTCATACAACTTCTTCT+TGG 0.361565 1_2:+50243660 None:intergenic
CGCCGGGAATGGACGGGTCG+TGG 0.375710 1_2:-50244473 Msa0075160:CDS
TCCCTGGATTGAGAGGAAAA+AGG 0.376331 1_2:+50243453 None:intergenic
AAGATCCAAGTCCGGGTTAT+GGG 0.387190 1_2:+50244233 None:intergenic
TTCAAACGAGTTGGCGATAC+GGG 0.393026 1_2:-50244447 Msa0075160:CDS
CTGGGGCCGGTCCCTCCCAC+CGG 0.396579 1_2:-50244736 Msa0075160:CDS
TTACAAGTATCTGCAACTTT+GGG 0.397228 1_2:+50243509 None:intergenic
GGTGGGCCCACGGGCATGGC+AGG 0.401801 1_2:+50244556 None:intergenic
GTCTGTTTACTACTTTGATT+CGG 0.402179 1_2:-50243717 Msa0075160:CDS
CGACAACCACTTTCCGCAAC+CGG 0.403919 1_2:-50244854 Msa0075160:CDS
AGAACGGATGAGGGGACTTC+CGG 0.405635 1_2:+50244824 None:intergenic
AAAGATCCAAGTCCGGGTTA+TGG 0.407434 1_2:+50244232 None:intergenic
GGAATATCCGCCGGTGGGGT+CGG 0.408123 1_2:+50244641 None:intergenic
TCCCACGACCCGTCCATTCC+CGG 0.410480 1_2:+50244471 None:intergenic
CTACATGCGTGACATTTATC+AGG 0.410736 1_2:-50243623 Msa0075160:intron
TTCTGTTACAAAACTTCTCT+GGG 0.418788 1_2:-50244754 Msa0075160:CDS
TCGGCGGTGGACCGGAAAAT+CGG 0.422294 1_2:+50244601 None:intergenic
TTCCGGTGAGTCGCCGGTTG+CGG 0.426085 1_2:+50244841 None:intergenic
ACCGGTGTCAGTGGCATCGC+CGG 0.428200 1_2:-50244490 Msa0075160:CDS
ATTTCATGCTCTGAAGTTGA+AGG 0.430518 1_2:+50243413 None:intergenic
GAAGACCCGGTGGGAGGGAC+CGG 0.431442 1_2:+50244730 None:intergenic
ACCATTTGATTTGACCTGGC+TGG 0.432166 1_2:+50243117 None:intergenic
AATTAGTCCGAGTTTGGATA+AGG 0.434261 1_2:-50244418 Msa0075160:CDS
TGTTTAATTCCGGGTTAAAT+GGG 0.435774 1_2:-50244260 Msa0075160:CDS
GTCAGTGGCATCGCCGGGAA+TGG 0.437517 1_2:-50244484 Msa0075160:CDS
CTGGTTCAGTTGATGATGAT+AGG 0.444961 1_2:+50243363 None:intergenic
CACTAAATGTTATCATGTAC+TGG 0.447151 1_2:-50243222 Msa0075160:three_prime_UTR
CCATTTGATTTGACCTGGCT+GGG 0.448514 1_2:+50243118 None:intergenic
TATCCGCCGGTGGGGTCGGA+GGG 0.453806 1_2:+50244645 None:intergenic
CTGAGAAGTGGTGGGTATGA+TGG 0.455128 1_2:-50244360 Msa0075160:CDS
TTCTTTGCAGACCTCATGGC+AGG 0.455813 1_2:-50243391 Msa0075160:CDS
TCACCACCGTCCGCACCGCC+TGG 0.466420 1_2:-50244704 Msa0075160:CDS
TGTTGTCAAGGGACATAGTC+AGG 0.469351 1_2:+50244799 None:intergenic
GGCAAGGTGGTGTGAGGAAG+AGG 0.471196 1_2:+50244887 None:intergenic
GTTGGCCCATAACCCGGACT+TGG 0.471548 1_2:-50244238 Msa0075160:CDS
ATATCCGCCGGTGGGGTCGG+AGG 0.471724 1_2:+50244644 None:intergenic
ACGAGTTGGCGATACGGGTC+GGG 0.473229 1_2:-50244442 Msa0075160:CDS
GTGGCATCGCCGGGAATGGA+CGG 0.474114 1_2:-50244480 Msa0075160:CDS
CTCAATCTTATCCTTTAACT+CGG 0.479397 1_2:+50244203 None:intergenic
CATCGACATTTCTTGTGACA+TGG 0.483541 1_2:+50244920 None:intergenic
CCCAGCCAGGTCAAATCAAA+TGG 0.489480 1_2:-50243118 None:intergenic
TCAATCTTATCCTTTAACTC+GGG 0.490673 1_2:+50244204 None:intergenic
TACACACCATTGTTCACAGT+TGG 0.492650 1_2:+50244159 None:intergenic
TTCCGCAACCGGCGACTCAC+CGG 0.497273 1_2:-50244843 Msa0075160:CDS
TAATTCCGGGTTAAATGGGT+TGG 0.498858 1_2:-50244256 Msa0075160:CDS
GAGACCACTCGGCGGTGGAC+CGG 0.504608 1_2:+50244593 None:intergenic
ATTCAAACGAGTTGGCGATA+CGG 0.505943 1_2:-50244448 Msa0075160:CDS
TAGTCAGGCGAGAACGGATG+AGG 0.506765 1_2:+50244814 None:intergenic
GTACGGTGGGCCCACGGGCA+TGG 0.510535 1_2:+50244552 None:intergenic
TGGTTCAGTTGATGATGATA+GGG 0.511787 1_2:+50243364 None:intergenic
CTGATAAATGTCACGCATGT+AGG 0.512267 1_2:+50243624 None:intergenic
GGAAAATCGGAATTTGGAAG+CGG 0.513633 1_2:+50244614 None:intergenic
GAATGGTTGCAAGACTTTGA+AGG 0.514214 1_2:-50244394 Msa0075160:CDS
TGAACAAATCTTTCACCCGT+TGG 0.514637 1_2:-50243322 Msa0075160:three_prime_UTR
TTACAAAACTTCTCTGGGGC+CGG 0.517177 1_2:-50244749 Msa0075160:CDS
GTTTATAGGCTGAGAAGTGG+TGG 0.517201 1_2:-50244369 Msa0075160:CDS
CGTTGGCCTGCCATGCCCGT+GGG 0.519717 1_2:-50244562 Msa0075160:CDS
CTGTGAACAATGGTGTGTAT+AGG 0.519759 1_2:-50244155 Msa0075160:intron
GCCGGGAATGGACGGGTCGT+GGG 0.520755 1_2:-50244472 Msa0075160:CDS
GACGAGAAGACCCGGTGGGA+GGG 0.521075 1_2:+50244725 None:intergenic
ACGTTGGCCTGCCATGCCCG+TGG 0.522921 1_2:-50244563 Msa0075160:CDS
ATCTTATCCTTTAACTCGGG+TGG 0.523502 1_2:+50244207 None:intergenic
AGTCCGTGCACTCAAAGGCT+TGG 0.523773 1_2:-50244523 Msa0075160:CDS
GGTGGTGAAAGATCCAAGTC+CGG 0.525217 1_2:+50244225 None:intergenic
CGGTTGCGGAAAGTGGTTGT+CGG 0.525507 1_2:+50244855 None:intergenic
TGGGGCCGGTCCCTCCCACC+GGG 0.526337 1_2:-50244735 Msa0075160:CDS
GGTCTGGAATATCCGCCGGT+GGG 0.527132 1_2:+50244636 None:intergenic
TGAGAGTACGGTGGGCCCAC+GGG 0.529134 1_2:+50244547 None:intergenic
TCTCACTCACAGTCCCAGCC+AGG 0.530524 1_2:-50243131 Msa0075160:three_prime_UTR
ATGAGAGTACGGTGGGCCCA+CGG 0.532271 1_2:+50244546 None:intergenic
GGGGACTTCCGGTGAGTCGC+CGG 0.532644 1_2:+50244835 None:intergenic
GAAATTCTTTGCAGACCTCA+TGG 0.534960 1_2:-50243395 Msa0075160:CDS
AAGAGGAATTGTTGTTGTCA+AGG 0.537371 1_2:+50244787 None:intergenic
CTTCCAAGCCTTTGAGTGCA+CGG 0.538720 1_2:+50244520 None:intergenic
TGGCATCGCCGGGAATGGAC+GGG 0.543073 1_2:-50244479 Msa0075160:CDS
CCGGTGTCAGTGGCATCGCC+GGG 0.544222 1_2:-50244489 Msa0075160:CDS
GAGTCGCCGGTTGCGGAAAG+TGG 0.545032 1_2:+50244848 None:intergenic
GGGACATAGTCAGGCGAGAA+CGG 0.547841 1_2:+50244808 None:intergenic
CTCATAGTCCGTGCACTCAA+AGG 0.550431 1_2:-50244528 Msa0075160:CDS
AAATGGGTTGGCCCATAACC+CGG 0.550836 1_2:-50244244 Msa0075160:CDS
CAGAGATGAAATTGAAAGTG+TGG 0.550937 1_2:+50243156 None:intergenic
AACGAGTTGGCGATACGGGT+CGG 0.551790 1_2:-50244443 Msa0075160:CDS
TCAAATTCTCGCTATTTGTG+TGG 0.552114 1_2:-50243766 Msa0075160:CDS
ACGCATGTAGGCATGTAGAT+TGG 0.554041 1_2:+50243636 None:intergenic
CTCGCTCCCTCCGACCCCAC+CGG 0.555197 1_2:-50244651 Msa0075160:CDS
GTGGTGAAAGATCCAAGTCC+GGG 0.556634 1_2:+50244226 None:intergenic
AACAGAACTTAGTAGGGAAG+AGG 0.556724 1_2:+50244770 None:intergenic
AGGTGGAGACCACTCGGCGG+TGG 0.556945 1_2:+50244588 None:intergenic
GAAAATCGGAATTTGGAAGC+GGG 0.558426 1_2:+50244615 None:intergenic
AGAGGAATTGTTGTTGTCAA+GGG 0.560702 1_2:+50244788 None:intergenic
ACATACAGAACAGAACCAAC+GGG 0.563191 1_2:+50243307 None:intergenic
ATCCACTGTGCCAATGTTGT+GGG 0.564376 1_2:-50244334 Msa0075160:CDS
CCCGGCGATGCCACTGACAC+CGG 0.564808 1_2:+50244489 None:intergenic
GTTCCAGGCGGTGCGGACGG+TGG 0.565288 1_2:+50244701 None:intergenic
AAGAACCATTTGATTTGACC+TGG 0.569685 1_2:+50243113 None:intergenic
TTTATAGGCTGAGAAGTGGT+GGG 0.570077 1_2:-50244368 Msa0075160:CDS
GGAGTTCCAGGCGGTGCGGA+CGG 0.570604 1_2:+50244698 None:intergenic
AGTGGTTGTCGGAGGAATGA+CGG 0.575482 1_2:+50244866 None:intergenic
CTAATGCTCCCTGGATTGAG+AGG 0.577711 1_2:+50243446 None:intergenic
GATCCACTGTGCCAATGTTG+TGG 0.577837 1_2:-50244335 Msa0075160:CDS
GTCTGGAATATCCGCCGGTG+GGG 0.581278 1_2:+50244637 None:intergenic
AGCGGGTCTGGAATATCCGC+CGG 0.585759 1_2:+50244632 None:intergenic
CGATGCCACTGACACCGGTA+CGG 0.586344 1_2:+50244494 None:intergenic
GGGTCTGGAATATCCGCCGG+TGG 0.588168 1_2:+50244635 None:intergenic
CCATTCGCCTTATCCAAACT+CGG 0.588222 1_2:+50244411 None:intergenic
CCGAGTTTGGATAAGGCGAA+TGG 0.588244 1_2:-50244411 Msa0075160:CDS
GAGTCTTTGTCCCACAACAT+TGG 0.589204 1_2:+50244324 None:intergenic
TCGTGGGAATTCAAACGAGT+TGG 0.593252 1_2:-50244456 Msa0075160:CDS
ATCGACATTTCTTGTGACAT+GGG 0.593717 1_2:+50244921 None:intergenic
ACGTAGAGGTGGAGACCACT+CGG 0.594306 1_2:+50244582 None:intergenic
CGAGTTAAAGGATAAGATTG+AGG 0.599820 1_2:-50244202 Msa0075160:CDS
GAAGTTTATAGGCTGAGAAG+TGG 0.602111 1_2:-50244372 Msa0075160:CDS
ATAATTGGTCTAATGCTCCC+TGG 0.605043 1_2:+50243437 None:intergenic
AAATGTTATCATGTACTGGC+TGG 0.607690 1_2:-50243218 Msa0075160:three_prime_UTR
AGTCAGGCGAGAACGGATGA+GGG 0.607726 1_2:+50244815 None:intergenic
TACATACAGAACAGAACCAA+CGG 0.609532 1_2:+50243306 None:intergenic
AGATTCCGTACCGGTGTCAG+TGG 0.611699 1_2:-50244499 Msa0075160:CDS
GTGCACGGACTATGAGAGTA+CGG 0.611941 1_2:+50244535 None:intergenic
TGACGAGAAGACCCGGTGGG+AGG 0.614676 1_2:+50244724 None:intergenic
ATGGCAGGCCAACGTAGAGG+TGG 0.617427 1_2:+50244571 None:intergenic
ACGGTGGTGACGAGAAGACC+CGG 0.617961 1_2:+50244717 None:intergenic
ATGGGCCAACCCATTTAACC+CGG 0.621534 1_2:+50244251 None:intergenic
CCAAGAAGCATATGATAAAG+CGG 0.622342 1_2:-50243833 Msa0075160:CDS
GCTCCCTCCGACCCCACCGG+CGG 0.625949 1_2:-50244648 Msa0075160:CDS
TAAAGGATAAGATTGAGGAA+TGG 0.626039 1_2:-50244197 Msa0075160:CDS
AGTGGTCTCCACCTCTACGT+TGG 0.627837 1_2:-50244579 Msa0075160:CDS
TCTTTGCAGACCTCATGGCA+GGG 0.630240 1_2:-50243390 Msa0075160:CDS
GGCATGGCAGGCCAACGTAG+AGG 0.643969 1_2:+50244568 None:intergenic
AGGCTTGGAAGATTCCGTAC+CGG 0.644423 1_2:-50244508 Msa0075160:CDS
TTGCGGAAAGTGGTTGTCGG+AGG 0.645779 1_2:+50244858 None:intergenic
ACGGACTATGAGAGTACGGT+GGG 0.649294 1_2:+50244539 None:intergenic
GTCAGGCGAGAACGGATGAG+GGG 0.653967 1_2:+50244816 None:intergenic
AATGACGGCAAGGTGGTGTG+AGG 0.658111 1_2:+50244881 None:intergenic
GTCCCACAACATTGGCACAG+TGG 0.659751 1_2:+50244332 None:intergenic
TTGTCGGAGGAATGACGGCA+AGG 0.661088 1_2:+50244871 None:intergenic
ACGTGGAGTTCCAGGCGGTG+CGG 0.675896 1_2:+50244694 None:intergenic
AGACATCATGAGCTGCCACG+TGG 0.697920 1_2:+50244677 None:intergenic
GATAGGGATTCCCTGCCATG+AGG 0.701385 1_2:+50243380 None:intergenic
CTGCCACGTGGAGTTCCAGG+CGG 0.705558 1_2:+50244689 None:intergenic
CACGGACTATGAGAGTACGG+TGG 0.713455 1_2:+50244538 None:intergenic
TCGGAGGAATGACGGCAAGG+TGG 0.715983 1_2:+50244874 None:intergenic
ATATATCCAACTGTGAACAA+TGG 0.716403 1_2:-50244165 Msa0075160:CDS
TGGTGACGAGAAGACCCGGT+GGG 0.717453 1_2:+50244721 None:intergenic
GTGGTGACGAGAAGACCCGG+TGG 0.722463 1_2:+50244720 None:intergenic
TCTGTTACAAAACTTCTCTG+GGG 0.724797 1_2:-50244753 Msa0075160:CDS
GCACCGCCTGGAACTCCACG+TGG 0.732654 1_2:-50244692 Msa0075160:CDS
TAGAGGTGGAGACCACTCGG+CGG 0.783474 1_2:+50244585 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTCAATTGTTTAATTC+CGG - chr1_2:50243788-50243807 Msa0075160:CDS 15.0%
!!! TTGTAATTTTCAAGAAATTA+TGG - chr1_2:50244566-50244585 Msa0075160:CDS 15.0%
!! ATAATTCAATTGTTTAATTC+CGG - chr1_2:50243788-50243807 Msa0075160:CDS 15.0%
!!! TTGTAATTTTCAAGAAATTA+TGG - chr1_2:50244566-50244585 Msa0075160:CDS 15.0%
!! TAATTCAATTGTTTAATTCC+GGG - chr1_2:50243789-50243808 Msa0075160:CDS 20.0%
!!! TCATCATTGATTATTGAATT+GGG - chr1_2:50244158-50244177 Msa0075160:CDS 20.0%
!!! AATTTTCAAGAAATTATGGA+TGG - chr1_2:50244570-50244589 Msa0075160:CDS 20.0%
!! TAATTCAATTGTTTAATTCC+GGG - chr1_2:50243789-50243808 Msa0075160:CDS 20.0%
!!! TCATCATTGATTATTGAATT+GGG - chr1_2:50244158-50244177 Msa0075160:CDS 20.0%
!!! AATTTTCAAGAAATTATGGA+TGG - chr1_2:50244570-50244589 Msa0075160:CDS 20.0%
!! TTTTGTAACAGAACTTAGTA+GGG + chr1_2:50243297-50243316 None:intergenic 25.0%
!! CTCATCATTGATTATTGAAT+TGG - chr1_2:50244157-50244176 Msa0075160:CDS 25.0%
!! TGAACCAGTATTTGTTAAAT+AGG - chr1_2:50244710-50244729 Msa0075160:CDS 25.0%
! ATTGCCTATTTAACAAATAC+TGG + chr1_2:50244717-50244736 None:intergenic 25.0%
!! TGCAAAGAAAGTGAAAATTT+TGG + chr1_2:50244875-50244894 None:intergenic 25.0%
!! TTTTGTAACAGAACTTAGTA+GGG + chr1_2:50243297-50243316 None:intergenic 25.0%
!! CTCATCATTGATTATTGAAT+TGG - chr1_2:50244157-50244176 Msa0075160:CDS 25.0%
!! TGAACCAGTATTTGTTAAAT+AGG - chr1_2:50244710-50244729 Msa0075160:CDS 25.0%
! ATTGCCTATTTAACAAATAC+TGG + chr1_2:50244717-50244736 None:intergenic 25.0%
!! TGCAAAGAAAGTGAAAATTT+TGG + chr1_2:50244875-50244894 None:intergenic 25.0%
! GTTTTGTAACAGAACTTAGT+AGG + chr1_2:50243298-50243317 None:intergenic 30.0%
TTCTGTTACAAAACTTCTCT+GGG - chr1_2:50243304-50243323 Msa0075160:three_prime_UTR 30.0%
! AGACTTTGAAGGAAGTTTAT+AGG - chr1_2:50243675-50243694 Msa0075160:CDS 30.0%
CTCATTACATACAACATCTT+TGG + chr1_2:50243759-50243778 None:intergenic 30.0%
TTGTTTAATTCCGGGTTAAA+TGG - chr1_2:50243797-50243816 Msa0075160:CDS 30.0%
TGTTTAATTCCGGGTTAAAT+GGG - chr1_2:50243798-50243817 Msa0075160:CDS 30.0%
TCAATCTTATCCTTTAACTC+GGG + chr1_2:50243857-50243876 None:intergenic 30.0%
CTCAATCTTATCCTTTAACT+CGG + chr1_2:50243858-50243877 None:intergenic 30.0%
TAAAGGATAAGATTGAGGAA+TGG - chr1_2:50243861-50243880 Msa0075160:intron 30.0%
ATATATCCAACTGTGAACAA+TGG - chr1_2:50243893-50243912 Msa0075160:intron 30.0%
TGAAAATATTCGAGCATGTT+TGG + chr1_2:50244062-50244081 None:intergenic 30.0%
! GTTTTGTACATTAGACAAGT+TGG - chr1_2:50244258-50244277 Msa0075160:CDS 30.0%
GTCTGTTTACTACTTTGATT+CGG - chr1_2:50244341-50244360 Msa0075160:CDS 30.0%
ATACTCATACAACTTCTTCT+TGG + chr1_2:50244401-50244420 None:intergenic 30.0%
GCTTTGCTCAAAATATGTTT+AGG - chr1_2:50244463-50244482 Msa0075160:CDS 30.0%
TTACAAGTATCTGCAACTTT+GGG + chr1_2:50244552-50244571 None:intergenic 30.0%
ATTACAAGTATCTGCAACTT+TGG + chr1_2:50244553-50244572 None:intergenic 30.0%
ATCTGCAATTCAACGTTTAT+AGG - chr1_2:50244784-50244803 Msa0075160:CDS 30.0%
CACTAAATGTTATCATGTAC+TGG - chr1_2:50244836-50244855 Msa0075160:CDS 30.0%
! GTTTTGTAACAGAACTTAGT+AGG + chr1_2:50243298-50243317 None:intergenic 30.0%
TTCTGTTACAAAACTTCTCT+GGG - chr1_2:50243304-50243323 Msa0075160:three_prime_UTR 30.0%
! AGACTTTGAAGGAAGTTTAT+AGG - chr1_2:50243675-50243694 Msa0075160:CDS 30.0%
CTCATTACATACAACATCTT+TGG + chr1_2:50243759-50243778 None:intergenic 30.0%
TTGTTTAATTCCGGGTTAAA+TGG - chr1_2:50243797-50243816 Msa0075160:CDS 30.0%
TGTTTAATTCCGGGTTAAAT+GGG - chr1_2:50243798-50243817 Msa0075160:CDS 30.0%
TCAATCTTATCCTTTAACTC+GGG + chr1_2:50243857-50243876 None:intergenic 30.0%
CTCAATCTTATCCTTTAACT+CGG + chr1_2:50243858-50243877 None:intergenic 30.0%
TAAAGGATAAGATTGAGGAA+TGG - chr1_2:50243861-50243880 Msa0075160:intron 30.0%
ATATATCCAACTGTGAACAA+TGG - chr1_2:50243893-50243912 Msa0075160:intron 30.0%
TGAAAATATTCGAGCATGTT+TGG + chr1_2:50244062-50244081 None:intergenic 30.0%
! GTTTTGTACATTAGACAAGT+TGG - chr1_2:50244258-50244277 Msa0075160:CDS 30.0%
GTCTGTTTACTACTTTGATT+CGG - chr1_2:50244341-50244360 Msa0075160:CDS 30.0%
ATACTCATACAACTTCTTCT+TGG + chr1_2:50244401-50244420 None:intergenic 30.0%
GCTTTGCTCAAAATATGTTT+AGG - chr1_2:50244463-50244482 Msa0075160:CDS 30.0%
TTACAAGTATCTGCAACTTT+GGG + chr1_2:50244552-50244571 None:intergenic 30.0%
ATTACAAGTATCTGCAACTT+TGG + chr1_2:50244553-50244572 None:intergenic 30.0%
ATCTGCAATTCAACGTTTAT+AGG - chr1_2:50244784-50244803 Msa0075160:CDS 30.0%
CACTAAATGTTATCATGTAC+TGG - chr1_2:50244836-50244855 Msa0075160:CDS 30.0%
ATCGACATTTCTTGTGACAT+GGG + chr1_2:50243140-50243159 None:intergenic 35.0%
! AGAGGAATTGTTGTTGTCAA+GGG + chr1_2:50243273-50243292 None:intergenic 35.0%
! AAGAGGAATTGTTGTTGTCA+AGG + chr1_2:50243274-50243293 None:intergenic 35.0%
GTTCTGTTACAAAACTTCTC+TGG - chr1_2:50243303-50243322 Msa0075160:three_prime_UTR 35.0%
TCTGTTACAAAACTTCTCTG+GGG - chr1_2:50243305-50243324 Msa0075160:three_prime_UTR 35.0%
AATTAGTCCGAGTTTGGATA+AGG - chr1_2:50243640-50243659 Msa0075160:CDS 35.0%
CGAGTTAAAGGATAAGATTG+AGG - chr1_2:50243856-50243875 Msa0075160:intron 35.0%
CGATGAGTTTGAGAAAATCA+TGG - chr1_2:50243964-50243983 Msa0075160:intron 35.0%
! GAAAATCATGGTGACACTTT+TGG - chr1_2:50243976-50243995 Msa0075160:intron 35.0%
ACGCTGAGTTAAACAAAATC+AGG + chr1_2:50244035-50244054 None:intergenic 35.0%
ATGATGAATGTCTACTCCAA+TGG + chr1_2:50244124-50244143 None:intergenic 35.0%
ATTGTTGCAATTTGCATTGC+AGG - chr1_2:50244185-50244204 Msa0075160:CDS 35.0%
! CCAAGAAGCATATGATAAAG+CGG - chr1_2:50244225-50244244 Msa0075160:CDS 35.0%
TCAAATTCTCGCTATTTGTG+TGG - chr1_2:50244292-50244311 Msa0075160:CDS 35.0%
! TCTGAAGTTGAAGGCATAAT+TGG + chr1_2:50244639-50244658 None:intergenic 35.0%
!! ATTTCATGCTCTGAAGTTGA+AGG + chr1_2:50244648-50244667 None:intergenic 35.0%
!! TGGTTCAGTTGATGATGATA+GGG + chr1_2:50244697-50244716 None:intergenic 35.0%
TACATACAGAACAGAACCAA+CGG + chr1_2:50244755-50244774 None:intergenic 35.0%
! AAATGTTATCATGTACTGGC+TGG - chr1_2:50244840-50244859 Msa0075160:CDS 35.0%
CAGAGATGAAATTGAAAGTG+TGG + chr1_2:50244905-50244924 None:intergenic 35.0%
CACACTTTCAATTTCATCTC+TGG - chr1_2:50244903-50244922 Msa0075160:CDS 35.0%
ATCGACATTTCTTGTGACAT+GGG + chr1_2:50243140-50243159 None:intergenic 35.0%
! AGAGGAATTGTTGTTGTCAA+GGG + chr1_2:50243273-50243292 None:intergenic 35.0%
! AAGAGGAATTGTTGTTGTCA+AGG + chr1_2:50243274-50243293 None:intergenic 35.0%
GTTCTGTTACAAAACTTCTC+TGG - chr1_2:50243303-50243322 Msa0075160:three_prime_UTR 35.0%
TCTGTTACAAAACTTCTCTG+GGG - chr1_2:50243305-50243324 Msa0075160:three_prime_UTR 35.0%
AATTAGTCCGAGTTTGGATA+AGG - chr1_2:50243640-50243659 Msa0075160:CDS 35.0%
CGAGTTAAAGGATAAGATTG+AGG - chr1_2:50243856-50243875 Msa0075160:intron 35.0%
CGATGAGTTTGAGAAAATCA+TGG - chr1_2:50243964-50243983 Msa0075160:intron 35.0%
! GAAAATCATGGTGACACTTT+TGG - chr1_2:50243976-50243995 Msa0075160:intron 35.0%
ACGCTGAGTTAAACAAAATC+AGG + chr1_2:50244035-50244054 None:intergenic 35.0%
ATGATGAATGTCTACTCCAA+TGG + chr1_2:50244124-50244143 None:intergenic 35.0%
ATTGTTGCAATTTGCATTGC+AGG - chr1_2:50244185-50244204 Msa0075160:CDS 35.0%
! CCAAGAAGCATATGATAAAG+CGG - chr1_2:50244225-50244244 Msa0075160:CDS 35.0%
TCAAATTCTCGCTATTTGTG+TGG - chr1_2:50244292-50244311 Msa0075160:CDS 35.0%
! TCTGAAGTTGAAGGCATAAT+TGG + chr1_2:50244639-50244658 None:intergenic 35.0%
!! ATTTCATGCTCTGAAGTTGA+AGG + chr1_2:50244648-50244667 None:intergenic 35.0%
!! TGGTTCAGTTGATGATGATA+GGG + chr1_2:50244697-50244716 None:intergenic 35.0%
TACATACAGAACAGAACCAA+CGG + chr1_2:50244755-50244774 None:intergenic 35.0%
! AAATGTTATCATGTACTGGC+TGG - chr1_2:50244840-50244859 Msa0075160:CDS 35.0%
CAGAGATGAAATTGAAAGTG+TGG + chr1_2:50244905-50244924 None:intergenic 35.0%
CACACTTTCAATTTCATCTC+TGG - chr1_2:50244903-50244922 Msa0075160:CDS 35.0%
CATCGACATTTCTTGTGACA+TGG + chr1_2:50243141-50243160 None:intergenic 40.0%
AACAGAACTTAGTAGGGAAG+AGG + chr1_2:50243291-50243310 None:intergenic 40.0%
GAAAATCGGAATTTGGAAGC+GGG + chr1_2:50243446-50243465 None:intergenic 40.0%
GGAAAATCGGAATTTGGAAG+CGG + chr1_2:50243447-50243466 None:intergenic 40.0%
! GCTTCCAAATTCCGATTTTC+CGG - chr1_2:50243446-50243465 Msa0075160:CDS 40.0%
! ATTCAAACGAGTTGGCGATA+CGG - chr1_2:50243610-50243629 Msa0075160:intron 40.0%
GAATGGTTGCAAGACTTTGA+AGG - chr1_2:50243664-50243683 Msa0075160:CDS 40.0%
GAAGTTTATAGGCTGAGAAG+TGG - chr1_2:50243686-50243705 Msa0075160:CDS 40.0%
TTTATAGGCTGAGAAGTGGT+GGG - chr1_2:50243690-50243709 Msa0075160:CDS 40.0%
TAATTCCGGGTTAAATGGGT+TGG - chr1_2:50243802-50243821 Msa0075160:CDS 40.0%
ATCTTATCCTTTAACTCGGG+TGG + chr1_2:50243854-50243873 None:intergenic 40.0%
TACACACCATTGTTCACAGT+TGG + chr1_2:50243902-50243921 None:intergenic 40.0%
CTGTGAACAATGGTGTGTAT+AGG - chr1_2:50243903-50243922 Msa0075160:intron 40.0%
!! ATGAGTTGGAAGCATCCAAA+GGG + chr1_2:50244100-50244119 None:intergenic 40.0%
!! TATGAGTTGGAAGCATCCAA+AGG + chr1_2:50244101-50244120 None:intergenic 40.0%
ATGCTTCCAACTCATACCAT+TGG - chr1_2:50244105-50244124 Msa0075160:intron 40.0%
TCTACTCCAATGGTATGAGT+TGG + chr1_2:50244114-50244133 None:intergenic 40.0%
CCGCTTTATCATATGCTTCT+TGG + chr1_2:50244228-50244247 None:intergenic 40.0%
CTGATAAATGTCACGCATGT+AGG + chr1_2:50244437-50244456 None:intergenic 40.0%
CTACATGCGTGACATTTATC+AGG - chr1_2:50244435-50244454 Msa0075160:CDS 40.0%
ATAGTATGTGTTTCGTGCCT+TGG - chr1_2:50244519-50244538 Msa0075160:CDS 40.0%
! ATAATTGGTCTAATGCTCCC+TGG + chr1_2:50244624-50244643 None:intergenic 40.0%
GAAATTCTTTGCAGACCTCA+TGG - chr1_2:50244663-50244682 Msa0075160:CDS 40.0%
!! CTGGTTCAGTTGATGATGAT+AGG + chr1_2:50244698-50244717 None:intergenic 40.0%
TGAACAAATCTTTCACCCGT+TGG - chr1_2:50244736-50244755 Msa0075160:CDS 40.0%
ACATACAGAACAGAACCAAC+GGG + chr1_2:50244754-50244773 None:intergenic 40.0%
CATCGACATTTCTTGTGACA+TGG + chr1_2:50243141-50243160 None:intergenic 40.0%
AACAGAACTTAGTAGGGAAG+AGG + chr1_2:50243291-50243310 None:intergenic 40.0%
GAAAATCGGAATTTGGAAGC+GGG + chr1_2:50243446-50243465 None:intergenic 40.0%
GGAAAATCGGAATTTGGAAG+CGG + chr1_2:50243447-50243466 None:intergenic 40.0%
! GCTTCCAAATTCCGATTTTC+CGG - chr1_2:50243446-50243465 Msa0075160:CDS 40.0%
! ATTCAAACGAGTTGGCGATA+CGG - chr1_2:50243610-50243629 Msa0075160:intron 40.0%
GAATGGTTGCAAGACTTTGA+AGG - chr1_2:50243664-50243683 Msa0075160:CDS 40.0%
GAAGTTTATAGGCTGAGAAG+TGG - chr1_2:50243686-50243705 Msa0075160:CDS 40.0%
TTTATAGGCTGAGAAGTGGT+GGG - chr1_2:50243690-50243709 Msa0075160:CDS 40.0%
TAATTCCGGGTTAAATGGGT+TGG - chr1_2:50243802-50243821 Msa0075160:CDS 40.0%
ATCTTATCCTTTAACTCGGG+TGG + chr1_2:50243854-50243873 None:intergenic 40.0%
TACACACCATTGTTCACAGT+TGG + chr1_2:50243902-50243921 None:intergenic 40.0%
CTGTGAACAATGGTGTGTAT+AGG - chr1_2:50243903-50243922 Msa0075160:intron 40.0%
!! ATGAGTTGGAAGCATCCAAA+GGG + chr1_2:50244100-50244119 None:intergenic 40.0%
!! TATGAGTTGGAAGCATCCAA+AGG + chr1_2:50244101-50244120 None:intergenic 40.0%
ATGCTTCCAACTCATACCAT+TGG - chr1_2:50244105-50244124 Msa0075160:intron 40.0%
TCTACTCCAATGGTATGAGT+TGG + chr1_2:50244114-50244133 None:intergenic 40.0%
CCGCTTTATCATATGCTTCT+TGG + chr1_2:50244228-50244247 None:intergenic 40.0%
CTGATAAATGTCACGCATGT+AGG + chr1_2:50244437-50244456 None:intergenic 40.0%
CTACATGCGTGACATTTATC+AGG - chr1_2:50244435-50244454 Msa0075160:CDS 40.0%
ATAGTATGTGTTTCGTGCCT+TGG - chr1_2:50244519-50244538 Msa0075160:CDS 40.0%
! ATAATTGGTCTAATGCTCCC+TGG + chr1_2:50244624-50244643 None:intergenic 40.0%
GAAATTCTTTGCAGACCTCA+TGG - chr1_2:50244663-50244682 Msa0075160:CDS 40.0%
!! CTGGTTCAGTTGATGATGAT+AGG + chr1_2:50244698-50244717 None:intergenic 40.0%
TGAACAAATCTTTCACCCGT+TGG - chr1_2:50244736-50244755 Msa0075160:CDS 40.0%
ACATACAGAACAGAACCAAC+GGG + chr1_2:50244754-50244773 None:intergenic 40.0%
TGTTGTCAAGGGACATAGTC+AGG + chr1_2:50243262-50243281 None:intergenic 45.0%
!! TTACAAAACTTCTCTGGGGC+CGG - chr1_2:50243309-50243328 Msa0075160:three_prime_UTR 45.0%
TGGACCGGAAAATCGGAATT+TGG + chr1_2:50243453-50243472 None:intergenic 45.0%
TCGTGGGAATTCAAACGAGT+TGG - chr1_2:50243602-50243621 Msa0075160:intron 45.0%
! TTCAAACGAGTTGGCGATAC+GGG - chr1_2:50243611-50243630 Msa0075160:intron 45.0%
CCATTCGCCTTATCCAAACT+CGG + chr1_2:50243650-50243669 None:intergenic 45.0%
GTTTATAGGCTGAGAAGTGG+TGG - chr1_2:50243689-50243708 Msa0075160:CDS 45.0%
ATCCACTGTGCCAATGTTGT+GGG - chr1_2:50243724-50243743 Msa0075160:CDS 45.0%
GAGTCTTTGTCCCACAACAT+TGG + chr1_2:50243737-50243756 None:intergenic 45.0%
AAGATCCAAGTCCGGGTTAT+GGG + chr1_2:50243828-50243847 None:intergenic 45.0%
AAAGATCCAAGTCCGGGTTA+TGG + chr1_2:50243829-50243848 None:intergenic 45.0%
TCTTTCACCACCCGAGTTAA+AGG - chr1_2:50243844-50243863 Msa0075160:CDS 45.0%
ACAACAGTTAGACCTCCCTT+TGG - chr1_2:50244082-50244101 Msa0075160:intron 45.0%
TGCAATTTGCATTGCAGGTG+TGG - chr1_2:50244190-50244209 Msa0075160:CDS 45.0%
GCAATTTGCATTGCAGGTGT+GGG - chr1_2:50244191-50244210 Msa0075160:CDS 45.0%
ACGCATGTAGGCATGTAGAT+TGG + chr1_2:50244425-50244444 None:intergenic 45.0%
! CAACTTTGGGAATCTGTCCA+AGG + chr1_2:50244539-50244558 None:intergenic 45.0%
! ACCCTTTTTCCTCTCAATCC+AGG - chr1_2:50244603-50244622 Msa0075160:CDS 45.0%
CCCTGGATTGAGAGGAAAAA+GGG + chr1_2:50244607-50244626 None:intergenic 45.0%
! CCCTTTTTCCTCTCAATCCA+GGG - chr1_2:50244604-50244623 Msa0075160:CDS 45.0%
TCCCTGGATTGAGAGGAAAA+AGG + chr1_2:50244608-50244627 None:intergenic 45.0%
TGTTGTCAAGGGACATAGTC+AGG + chr1_2:50243262-50243281 None:intergenic 45.0%
!! TTACAAAACTTCTCTGGGGC+CGG - chr1_2:50243309-50243328 Msa0075160:three_prime_UTR 45.0%
TGGACCGGAAAATCGGAATT+TGG + chr1_2:50243453-50243472 None:intergenic 45.0%
TCGTGGGAATTCAAACGAGT+TGG - chr1_2:50243602-50243621 Msa0075160:intron 45.0%
! TTCAAACGAGTTGGCGATAC+GGG - chr1_2:50243611-50243630 Msa0075160:intron 45.0%
CCATTCGCCTTATCCAAACT+CGG + chr1_2:50243650-50243669 None:intergenic 45.0%
GTTTATAGGCTGAGAAGTGG+TGG - chr1_2:50243689-50243708 Msa0075160:CDS 45.0%
ATCCACTGTGCCAATGTTGT+GGG - chr1_2:50243724-50243743 Msa0075160:CDS 45.0%
GAGTCTTTGTCCCACAACAT+TGG + chr1_2:50243737-50243756 None:intergenic 45.0%
AAGATCCAAGTCCGGGTTAT+GGG + chr1_2:50243828-50243847 None:intergenic 45.0%
AAAGATCCAAGTCCGGGTTA+TGG + chr1_2:50243829-50243848 None:intergenic 45.0%
TCTTTCACCACCCGAGTTAA+AGG - chr1_2:50243844-50243863 Msa0075160:CDS 45.0%
ACAACAGTTAGACCTCCCTT+TGG - chr1_2:50244082-50244101 Msa0075160:intron 45.0%
TGCAATTTGCATTGCAGGTG+TGG - chr1_2:50244190-50244209 Msa0075160:CDS 45.0%
GCAATTTGCATTGCAGGTGT+GGG - chr1_2:50244191-50244210 Msa0075160:CDS 45.0%
ACGCATGTAGGCATGTAGAT+TGG + chr1_2:50244425-50244444 None:intergenic 45.0%
! CAACTTTGGGAATCTGTCCA+AGG + chr1_2:50244539-50244558 None:intergenic 45.0%
! ACCCTTTTTCCTCTCAATCC+AGG - chr1_2:50244603-50244622 Msa0075160:CDS 45.0%
CCCTGGATTGAGAGGAAAAA+GGG + chr1_2:50244607-50244626 None:intergenic 45.0%
! CCCTTTTTCCTCTCAATCCA+GGG - chr1_2:50244604-50244623 Msa0075160:CDS 45.0%
TCCCTGGATTGAGAGGAAAA+AGG + chr1_2:50244608-50244627 None:intergenic 45.0%
AGTGGTTGTCGGAGGAATGA+CGG + chr1_2:50243195-50243214 None:intergenic 50.0%
! ACGGACTATGAGAGTACGGT+GGG + chr1_2:50243522-50243541 None:intergenic 50.0%
! GTGCACGGACTATGAGAGTA+CGG + chr1_2:50243526-50243545 None:intergenic 50.0%
CTCATAGTCCGTGCACTCAA+AGG - chr1_2:50243530-50243549 Msa0075160:intron 50.0%
CTTCCAAGCCTTTGAGTGCA+CGG + chr1_2:50243541-50243560 None:intergenic 50.0%
AGGCTTGGAAGATTCCGTAC+CGG - chr1_2:50243550-50243569 Msa0075160:intron 50.0%
TCGGGCAATTAGTCCGAGTT+TGG - chr1_2:50243634-50243653 Msa0075160:CDS 50.0%
CCGAGTTTGGATAAGGCGAA+TGG - chr1_2:50243647-50243666 Msa0075160:CDS 50.0%
!! CTGAGAAGTGGTGGGTATGA+TGG - chr1_2:50243698-50243717 Msa0075160:CDS 50.0%
GATCCACTGTGCCAATGTTG+TGG - chr1_2:50243723-50243742 Msa0075160:CDS 50.0%
ATGGGCCAACCCATTTAACC+CGG + chr1_2:50243810-50243829 None:intergenic 50.0%
!! AAATGGGTTGGCCCATAACC+CGG - chr1_2:50243814-50243833 Msa0075160:CDS 50.0%
GTGGTGAAAGATCCAAGTCC+GGG + chr1_2:50243835-50243854 None:intergenic 50.0%
GGTGGTGAAAGATCCAAGTC+CGG + chr1_2:50243836-50243855 None:intergenic 50.0%
!! AGTTGGAAGCATCCAAAGGG+AGG + chr1_2:50244097-50244116 None:intergenic 50.0%
CTAATGCTCCCTGGATTGAG+AGG + chr1_2:50244615-50244634 None:intergenic 50.0%
TTCTTTGCAGACCTCATGGC+AGG - chr1_2:50244667-50244686 Msa0075160:CDS 50.0%
TCTTTGCAGACCTCATGGCA+GGG - chr1_2:50244668-50244687 Msa0075160:CDS 50.0%
AGTGGTTGTCGGAGGAATGA+CGG + chr1_2:50243195-50243214 None:intergenic 50.0%
! ACGGACTATGAGAGTACGGT+GGG + chr1_2:50243522-50243541 None:intergenic 50.0%
! GTGCACGGACTATGAGAGTA+CGG + chr1_2:50243526-50243545 None:intergenic 50.0%
CTCATAGTCCGTGCACTCAA+AGG - chr1_2:50243530-50243549 Msa0075160:intron 50.0%
CTTCCAAGCCTTTGAGTGCA+CGG + chr1_2:50243541-50243560 None:intergenic 50.0%
AGGCTTGGAAGATTCCGTAC+CGG - chr1_2:50243550-50243569 Msa0075160:intron 50.0%
TCGGGCAATTAGTCCGAGTT+TGG - chr1_2:50243634-50243653 Msa0075160:CDS 50.0%
CCGAGTTTGGATAAGGCGAA+TGG - chr1_2:50243647-50243666 Msa0075160:CDS 50.0%
!! CTGAGAAGTGGTGGGTATGA+TGG - chr1_2:50243698-50243717 Msa0075160:CDS 50.0%
GATCCACTGTGCCAATGTTG+TGG - chr1_2:50243723-50243742 Msa0075160:CDS 50.0%
ATGGGCCAACCCATTTAACC+CGG + chr1_2:50243810-50243829 None:intergenic 50.0%
!! AAATGGGTTGGCCCATAACC+CGG - chr1_2:50243814-50243833 Msa0075160:CDS 50.0%
GTGGTGAAAGATCCAAGTCC+GGG + chr1_2:50243835-50243854 None:intergenic 50.0%
GGTGGTGAAAGATCCAAGTC+CGG + chr1_2:50243836-50243855 None:intergenic 50.0%
!! AGTTGGAAGCATCCAAAGGG+AGG + chr1_2:50244097-50244116 None:intergenic 50.0%
CTAATGCTCCCTGGATTGAG+AGG + chr1_2:50244615-50244634 None:intergenic 50.0%
TTCTTTGCAGACCTCATGGC+AGG - chr1_2:50244667-50244686 Msa0075160:CDS 50.0%
TCTTTGCAGACCTCATGGCA+GGG - chr1_2:50244668-50244687 Msa0075160:CDS 50.0%
AATGACGGCAAGGTGGTGTG+AGG + chr1_2:50243180-50243199 None:intergenic 55.0%
TTGTCGGAGGAATGACGGCA+AGG + chr1_2:50243190-50243209 None:intergenic 55.0%
TTGCGGAAAGTGGTTGTCGG+AGG + chr1_2:50243203-50243222 None:intergenic 55.0%
CGGTTGCGGAAAGTGGTTGT+CGG + chr1_2:50243206-50243225 None:intergenic 55.0%
CGACAACCACTTTCCGCAAC+CGG - chr1_2:50243204-50243223 Msa0075160:three_prime_UTR 55.0%
AGAACGGATGAGGGGACTTC+CGG + chr1_2:50243237-50243256 None:intergenic 55.0%
AGTCAGGCGAGAACGGATGA+GGG + chr1_2:50243246-50243265 None:intergenic 55.0%
TAGTCAGGCGAGAACGGATG+AGG + chr1_2:50243247-50243266 None:intergenic 55.0%
GGGACATAGTCAGGCGAGAA+CGG + chr1_2:50243253-50243272 None:intergenic 55.0%
AGACATCATGAGCTGCCACG+TGG + chr1_2:50243384-50243403 None:intergenic 55.0%
TCGGAATTTGGAAGCGGGTC+TGG + chr1_2:50243441-50243460 None:intergenic 55.0%
ACGTAGAGGTGGAGACCACT+CGG + chr1_2:50243479-50243498 None:intergenic 55.0%
AGTGGTCTCCACCTCTACGT+TGG - chr1_2:50243479-50243498 Msa0075160:CDS 55.0%
! CACGGACTATGAGAGTACGG+TGG + chr1_2:50243523-50243542 None:intergenic 55.0%
AGTCCGTGCACTCAAAGGCT+TGG - chr1_2:50243535-50243554 Msa0075160:intron 55.0%
! AGATTCCGTACCGGTGTCAG+TGG - chr1_2:50243559-50243578 Msa0075160:intron 55.0%
! AACGAGTTGGCGATACGGGT+CGG - chr1_2:50243615-50243634 Msa0075160:intron 55.0%
GTCCCACAACATTGGCACAG+TGG + chr1_2:50243729-50243748 None:intergenic 55.0%
GATAGGGATTCCCTGCCATG+AGG + chr1_2:50244681-50244700 None:intergenic 55.0%
AATGACGGCAAGGTGGTGTG+AGG + chr1_2:50243180-50243199 None:intergenic 55.0%
TTGTCGGAGGAATGACGGCA+AGG + chr1_2:50243190-50243209 None:intergenic 55.0%
TTGCGGAAAGTGGTTGTCGG+AGG + chr1_2:50243203-50243222 None:intergenic 55.0%
CGGTTGCGGAAAGTGGTTGT+CGG + chr1_2:50243206-50243225 None:intergenic 55.0%
CGACAACCACTTTCCGCAAC+CGG - chr1_2:50243204-50243223 Msa0075160:three_prime_UTR 55.0%
AGAACGGATGAGGGGACTTC+CGG + chr1_2:50243237-50243256 None:intergenic 55.0%
AGTCAGGCGAGAACGGATGA+GGG + chr1_2:50243246-50243265 None:intergenic 55.0%
TAGTCAGGCGAGAACGGATG+AGG + chr1_2:50243247-50243266 None:intergenic 55.0%
GGGACATAGTCAGGCGAGAA+CGG + chr1_2:50243253-50243272 None:intergenic 55.0%
AGACATCATGAGCTGCCACG+TGG + chr1_2:50243384-50243403 None:intergenic 55.0%
TCGGAATTTGGAAGCGGGTC+TGG + chr1_2:50243441-50243460 None:intergenic 55.0%
ACGTAGAGGTGGAGACCACT+CGG + chr1_2:50243479-50243498 None:intergenic 55.0%
AGTGGTCTCCACCTCTACGT+TGG - chr1_2:50243479-50243498 Msa0075160:CDS 55.0%
! CACGGACTATGAGAGTACGG+TGG + chr1_2:50243523-50243542 None:intergenic 55.0%
AGTCCGTGCACTCAAAGGCT+TGG - chr1_2:50243535-50243554 Msa0075160:intron 55.0%
! AGATTCCGTACCGGTGTCAG+TGG - chr1_2:50243559-50243578 Msa0075160:intron 55.0%
! AACGAGTTGGCGATACGGGT+CGG - chr1_2:50243615-50243634 Msa0075160:intron 55.0%
GTCCCACAACATTGGCACAG+TGG + chr1_2:50243729-50243748 None:intergenic 55.0%
GATAGGGATTCCCTGCCATG+AGG + chr1_2:50244681-50244700 None:intergenic 55.0%
GGCAAGGTGGTGTGAGGAAG+AGG + chr1_2:50243174-50243193 None:intergenic 60.0%
TCGGAGGAATGACGGCAAGG+TGG + chr1_2:50243187-50243206 None:intergenic 60.0%
GTCAGGCGAGAACGGATGAG+GGG + chr1_2:50243245-50243264 None:intergenic 60.0%
! TGGTGACGAGAAGACCCGGT+GGG + chr1_2:50243340-50243359 None:intergenic 60.0%
! ACGGTGGTGACGAGAAGACC+CGG + chr1_2:50243344-50243363 None:intergenic 60.0%
! GTCTGGAATATCCGCCGGTG+GGG + chr1_2:50243424-50243443 None:intergenic 60.0%
! GGTCTGGAATATCCGCCGGT+GGG + chr1_2:50243425-50243444 None:intergenic 60.0%
! AGCGGGTCTGGAATATCCGC+CGG + chr1_2:50243429-50243448 None:intergenic 60.0%
TCGGCGGTGGACCGGAAAAT+CGG + chr1_2:50243460-50243479 None:intergenic 60.0%
TAGAGGTGGAGACCACTCGG+CGG + chr1_2:50243476-50243495 None:intergenic 60.0%
ATGGCAGGCCAACGTAGAGG+TGG + chr1_2:50243490-50243509 None:intergenic 60.0%
! ATGAGAGTACGGTGGGCCCA+CGG + chr1_2:50243515-50243534 None:intergenic 60.0%
CGATGCCACTGACACCGGTA+CGG + chr1_2:50243567-50243586 None:intergenic 60.0%
! ACGAGTTGGCGATACGGGTC+GGG - chr1_2:50243616-50243635 Msa0075160:intron 60.0%
GTTGGCCCATAACCCGGACT+TGG - chr1_2:50243820-50243839 Msa0075160:CDS 60.0%
TCTCACTCACAGTCCCAGCC+AGG - chr1_2:50244927-50244946 Msa0075160:exon 60.0%
GGCAAGGTGGTGTGAGGAAG+AGG + chr1_2:50243174-50243193 None:intergenic 60.0%
TCGGAGGAATGACGGCAAGG+TGG + chr1_2:50243187-50243206 None:intergenic 60.0%
GTCAGGCGAGAACGGATGAG+GGG + chr1_2:50243245-50243264 None:intergenic 60.0%
! TGGTGACGAGAAGACCCGGT+GGG + chr1_2:50243340-50243359 None:intergenic 60.0%
! ACGGTGGTGACGAGAAGACC+CGG + chr1_2:50243344-50243363 None:intergenic 60.0%
! GTCTGGAATATCCGCCGGTG+GGG + chr1_2:50243424-50243443 None:intergenic 60.0%
! GGTCTGGAATATCCGCCGGT+GGG + chr1_2:50243425-50243444 None:intergenic 60.0%
! AGCGGGTCTGGAATATCCGC+CGG + chr1_2:50243429-50243448 None:intergenic 60.0%
TCGGCGGTGGACCGGAAAAT+CGG + chr1_2:50243460-50243479 None:intergenic 60.0%
TAGAGGTGGAGACCACTCGG+CGG + chr1_2:50243476-50243495 None:intergenic 60.0%
ATGGCAGGCCAACGTAGAGG+TGG + chr1_2:50243490-50243509 None:intergenic 60.0%
! ATGAGAGTACGGTGGGCCCA+CGG + chr1_2:50243515-50243534 None:intergenic 60.0%
CGATGCCACTGACACCGGTA+CGG + chr1_2:50243567-50243586 None:intergenic 60.0%
! ACGAGTTGGCGATACGGGTC+GGG - chr1_2:50243616-50243635 Msa0075160:intron 60.0%
GTTGGCCCATAACCCGGACT+TGG - chr1_2:50243820-50243839 Msa0075160:CDS 60.0%
TCTCACTCACAGTCCCAGCC+AGG - chr1_2:50244927-50244946 Msa0075160:exon 60.0%
! GAGTCGCCGGTTGCGGAAAG+TGG + chr1_2:50243213-50243232 None:intergenic 65.0%
TTCCGCAACCGGCGACTCAC+CGG - chr1_2:50243215-50243234 Msa0075160:three_prime_UTR 65.0%
! TTCCGGTGAGTCGCCGGTTG+CGG + chr1_2:50243220-50243239 None:intergenic 65.0%
GACGAGAAGACCCGGTGGGA+GGG + chr1_2:50243336-50243355 None:intergenic 65.0%
TGACGAGAAGACCCGGTGGG+AGG + chr1_2:50243337-50243356 None:intergenic 65.0%
! GTGGTGACGAGAAGACCCGG+TGG + chr1_2:50243341-50243360 None:intergenic 65.0%
ACGTGGAGTTCCAGGCGGTG+CGG + chr1_2:50243367-50243386 None:intergenic 65.0%
CTGCCACGTGGAGTTCCAGG+CGG + chr1_2:50243372-50243391 None:intergenic 65.0%
GAGCTGCCACGTGGAGTTCC+AGG + chr1_2:50243375-50243394 None:intergenic 65.0%
GGAATATCCGCCGGTGGGGT+CGG + chr1_2:50243420-50243439 None:intergenic 65.0%
! GGGTCTGGAATATCCGCCGG+TGG + chr1_2:50243426-50243445 None:intergenic 65.0%
! TTTTCCGGTCCACCGCCGAG+TGG - chr1_2:50243461-50243480 Msa0075160:CDS 65.0%
GGCATGGCAGGCCAACGTAG+AGG + chr1_2:50243493-50243512 None:intergenic 65.0%
! TGAGAGTACGGTGGGCCCAC+GGG + chr1_2:50243514-50243533 None:intergenic 65.0%
! ACCGGTGTCAGTGGCATCGC+CGG - chr1_2:50243568-50243587 Msa0075160:intron 65.0%
GTCAGTGGCATCGCCGGGAA+TGG - chr1_2:50243574-50243593 Msa0075160:intron 65.0%
GTGGCATCGCCGGGAATGGA+CGG - chr1_2:50243578-50243597 Msa0075160:intron 65.0%
TGGCATCGCCGGGAATGGAC+GGG - chr1_2:50243579-50243598 Msa0075160:intron 65.0%
TCCCACGACCCGTCCATTCC+CGG + chr1_2:50243590-50243609 None:intergenic 65.0%
! GAGTCGCCGGTTGCGGAAAG+TGG + chr1_2:50243213-50243232 None:intergenic 65.0%
TTCCGCAACCGGCGACTCAC+CGG - chr1_2:50243215-50243234 Msa0075160:three_prime_UTR 65.0%
! TTCCGGTGAGTCGCCGGTTG+CGG + chr1_2:50243220-50243239 None:intergenic 65.0%
GACGAGAAGACCCGGTGGGA+GGG + chr1_2:50243336-50243355 None:intergenic 65.0%
TGACGAGAAGACCCGGTGGG+AGG + chr1_2:50243337-50243356 None:intergenic 65.0%
! GTGGTGACGAGAAGACCCGG+TGG + chr1_2:50243341-50243360 None:intergenic 65.0%
ACGTGGAGTTCCAGGCGGTG+CGG + chr1_2:50243367-50243386 None:intergenic 65.0%
CTGCCACGTGGAGTTCCAGG+CGG + chr1_2:50243372-50243391 None:intergenic 65.0%
GAGCTGCCACGTGGAGTTCC+AGG + chr1_2:50243375-50243394 None:intergenic 65.0%
GGAATATCCGCCGGTGGGGT+CGG + chr1_2:50243420-50243439 None:intergenic 65.0%
! GGGTCTGGAATATCCGCCGG+TGG + chr1_2:50243426-50243445 None:intergenic 65.0%
! TTTTCCGGTCCACCGCCGAG+TGG - chr1_2:50243461-50243480 Msa0075160:CDS 65.0%
GGCATGGCAGGCCAACGTAG+AGG + chr1_2:50243493-50243512 None:intergenic 65.0%
! TGAGAGTACGGTGGGCCCAC+GGG + chr1_2:50243514-50243533 None:intergenic 65.0%
! ACCGGTGTCAGTGGCATCGC+CGG - chr1_2:50243568-50243587 Msa0075160:intron 65.0%
GTCAGTGGCATCGCCGGGAA+TGG - chr1_2:50243574-50243593 Msa0075160:intron 65.0%
GTGGCATCGCCGGGAATGGA+CGG - chr1_2:50243578-50243597 Msa0075160:intron 65.0%
TGGCATCGCCGGGAATGGAC+GGG - chr1_2:50243579-50243598 Msa0075160:intron 65.0%
TCCCACGACCCGTCCATTCC+CGG + chr1_2:50243590-50243609 None:intergenic 65.0%
GGGGACTTCCGGTGAGTCGC+CGG + chr1_2:50243226-50243245 None:intergenic 70.0%
GAAGACCCGGTGGGAGGGAC+CGG + chr1_2:50243331-50243350 None:intergenic 70.0%
GGAGTTCCAGGCGGTGCGGA+CGG + chr1_2:50243363-50243382 None:intergenic 70.0%
GCACCGCCTGGAACTCCACG+TGG - chr1_2:50243366-50243385 Msa0075160:CDS 70.0%
TATCCGCCGGTGGGGTCGGA+GGG + chr1_2:50243416-50243435 None:intergenic 70.0%
ATATCCGCCGGTGGGGTCGG+AGG + chr1_2:50243417-50243436 None:intergenic 70.0%
GAGACCACTCGGCGGTGGAC+CGG + chr1_2:50243468-50243487 None:intergenic 70.0%
AGGTGGAGACCACTCGGCGG+TGG + chr1_2:50243473-50243492 None:intergenic 70.0%
! ACGTTGGCCTGCCATGCCCG+TGG - chr1_2:50243495-50243514 Msa0075160:CDS 70.0%
! CGTTGGCCTGCCATGCCCGT+GGG - chr1_2:50243496-50243515 Msa0075160:CDS 70.0%
CCCGGCGATGCCACTGACAC+CGG + chr1_2:50243572-50243591 None:intergenic 70.0%
! CCGGTGTCAGTGGCATCGCC+GGG - chr1_2:50243569-50243588 Msa0075160:intron 70.0%
GCCGGGAATGGACGGGTCGT+GGG - chr1_2:50243586-50243605 Msa0075160:intron 70.0%
GGGGACTTCCGGTGAGTCGC+CGG + chr1_2:50243226-50243245 None:intergenic 70.0%
GAAGACCCGGTGGGAGGGAC+CGG + chr1_2:50243331-50243350 None:intergenic 70.0%
GGAGTTCCAGGCGGTGCGGA+CGG + chr1_2:50243363-50243382 None:intergenic 70.0%
GCACCGCCTGGAACTCCACG+TGG - chr1_2:50243366-50243385 Msa0075160:CDS 70.0%
TATCCGCCGGTGGGGTCGGA+GGG + chr1_2:50243416-50243435 None:intergenic 70.0%
ATATCCGCCGGTGGGGTCGG+AGG + chr1_2:50243417-50243436 None:intergenic 70.0%
GAGACCACTCGGCGGTGGAC+CGG + chr1_2:50243468-50243487 None:intergenic 70.0%
AGGTGGAGACCACTCGGCGG+TGG + chr1_2:50243473-50243492 None:intergenic 70.0%
! ACGTTGGCCTGCCATGCCCG+TGG - chr1_2:50243495-50243514 Msa0075160:CDS 70.0%
! CGTTGGCCTGCCATGCCCGT+GGG - chr1_2:50243496-50243515 Msa0075160:CDS 70.0%
CCCGGCGATGCCACTGACAC+CGG + chr1_2:50243572-50243591 None:intergenic 70.0%
! CCGGTGTCAGTGGCATCGCC+GGG - chr1_2:50243569-50243588 Msa0075160:intron 70.0%
GCCGGGAATGGACGGGTCGT+GGG - chr1_2:50243586-50243605 Msa0075160:intron 70.0%
TCACCACCGTCCGCACCGCC+TGG - chr1_2:50243354-50243373 Msa0075160:CDS 75.0%
GTTCCAGGCGGTGCGGACGG+TGG + chr1_2:50243360-50243379 None:intergenic 75.0%
CTCGCTCCCTCCGACCCCAC+CGG - chr1_2:50243407-50243426 Msa0075160:CDS 75.0%
GTACGGTGGGCCCACGGGCA+TGG + chr1_2:50243509-50243528 None:intergenic 75.0%
CGCCGGGAATGGACGGGTCG+TGG - chr1_2:50243585-50243604 Msa0075160:intron 75.0%
TCACCACCGTCCGCACCGCC+TGG - chr1_2:50243354-50243373 Msa0075160:CDS 75.0%
GTTCCAGGCGGTGCGGACGG+TGG + chr1_2:50243360-50243379 None:intergenic 75.0%
CTCGCTCCCTCCGACCCCAC+CGG - chr1_2:50243407-50243426 Msa0075160:CDS 75.0%
GTACGGTGGGCCCACGGGCA+TGG + chr1_2:50243509-50243528 None:intergenic 75.0%
CGCCGGGAATGGACGGGTCG+TGG - chr1_2:50243585-50243604 Msa0075160:intron 75.0%
! CTGGGGCCGGTCCCTCCCAC+CGG - chr1_2:50243322-50243341 Msa0075160:three_prime_UTR 80.0%
! TGGGGCCGGTCCCTCCCACC+GGG - chr1_2:50243323-50243342 Msa0075160:three_prime_UTR 80.0%
! GCTCCCTCCGACCCCACCGG+CGG - chr1_2:50243410-50243429 Msa0075160:CDS 80.0%
! GGTGGGCCCACGGGCATGGC+AGG + chr1_2:50243505-50243524 None:intergenic 80.0%
! CTGGGGCCGGTCCCTCCCAC+CGG - chr1_2:50243322-50243341 Msa0075160:three_prime_UTR 80.0%
! TGGGGCCGGTCCCTCCCACC+GGG - chr1_2:50243323-50243342 Msa0075160:three_prime_UTR 80.0%
! GCTCCCTCCGACCCCACCGG+CGG - chr1_2:50243410-50243429 Msa0075160:CDS 80.0%
! GGTGGGCCCACGGGCATGGC+AGG + chr1_2:50243505-50243524 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 50243120 50244960 50243120 ID=Msa0075160;Name=Msa0075160
chr1_2 mRNA 50243120 50244960 50243120 ID=Msa0075160-mRNA-1;Parent=Msa0075160;Name=Msa0075160-mRNA-1;_AED=0.01;_eAED=0.01;_QI=20|1|1|1|1|1|3|229|406
chr1_2 exon 50243120 50243534 50243120 ID=Msa0075160-mRNA-1:exon:15458;Parent=Msa0075160-mRNA-1
chr1_2 exon 50243624 50243873 50243624 ID=Msa0075160-mRNA-1:exon:15457;Parent=Msa0075160-mRNA-1
chr1_2 exon 50244156 50244960 50244156 ID=Msa0075160-mRNA-1:exon:15456;Parent=Msa0075160-mRNA-1
chr1_2 five_prime_UTR 50244941 50244960 50244941 ID=Msa0075160-mRNA-1:five_prime_utr;Parent=Msa0075160-mRNA-1
chr1_2 CDS 50244156 50244940 50244156 ID=Msa0075160-mRNA-1:cds;Parent=Msa0075160-mRNA-1
chr1_2 CDS 50243624 50243873 50243624 ID=Msa0075160-mRNA-1:cds;Parent=Msa0075160-mRNA-1
chr1_2 CDS 50243349 50243534 50243349 ID=Msa0075160-mRNA-1:cds;Parent=Msa0075160-mRNA-1
chr1_2 three_prime_UTR 50243120 50243348 50243120 ID=Msa0075160-mRNA-1:three_prime_utr;Parent=Msa0075160-mRNA-1
Gene Sequence

>Msa0075160

ATGTCACAAGAAATGTCGATGTTGTGCGCTACCTCTTCCTCACACCACCTTGCCGTCATTCCTCCGACAACCACTTTCCGCAACCGGCGACTCACCGGAAGTCCCCTCATCCGTTCTCGCCTGACTATGTCCCTTGACAACAACAATTCCTCTTCCCTACTAAGTTCTGTTACAAAACTTCTCTGGGGCCGGTCCCTCCCACCGGGTCTTCTCGTCACCACCGTCCGCACCGCCTGGAACTCCACGTGGCAGCTCATGATGTCTCAGCTCGCTCCCTCCGACCCCACCGGCGGATATTCCAGACCCGCTTCCAAATTCCGATTTTCCGGTCCACCGCCGAGTGGTCTCCACCTCTACGTTGGCCTGCCATGCCCGTGGGCCCACCGTACTCTCATAGTCCGTGCACTCAAAGGCTTGGAAGATTCCGTACCGGTGTCAGTGGCATCGCCGGGAATGGACGGGTCGTGGGAATTCAAACGAGTTGGCGATACGGGTCGGGCAATTAGTCCGAGTTTGGATAAGGCGAATGGTTGCAAGACTTTGAAGGAAGTTTATAGGCTGAGAAGTGGTGGGTATGATGGAAGATCCACTGTGCCAATGTTGTGGGACAAAGACTCCAAAGATGTTGTATGTAATGAGAGTTATGATATAATTCAATTGTTTAATTCCGGGTTAAATGGGTTGGCCCATAACCCGGACTTGGATCTTTCACCACCCGAGTTAAAGGATAAGATTGAGGAATGGTATCAAGTGATATATCCAACTGTGAACAATGGTGTGTATAGGTGTGGGTTTGCACAGAGCCAAGAAGCATATGATAAAGCGGTGAATGAGTTGTTTTGTACATTAGACAAGTTGGAGAATCACTTATCAAATTCTCGCTATTTGTGTGGAGACGCGCTCACACTTGTTGATATATGTCTGTTTACTACTTTGATTCGGTTTGATATTGCTTATAATGTTTTGTTTAAATGCACCAAGAAGAAGTTGTATGAGTATACCAATCTACATGCCTACATGCGTGACATTTATCAGATTCCCAAAGTTGCAGATACTTGTAATTTTCAAGAAATTATGGATGGTTACTACAAAACCCTTTTTCCTCTCAATCCAGGGAGCATTAGACCAATTATGCCTTCAACTTCAGAGCATGAAATTCTTTGCAGACCTCATGGCAGGGAATCCCTATCATCATCAACTGAACCAGTATTTGTTAAATAG
Protein sequence

>Msa0075160

MSQEMSMLCATSSSHHLAVIPPTTTFRNRRLTGSPLIRSRLTMSLDNNNSSSLLSSVTKLLWGRSLPPGLLVTTVRTAWNSTWQLMMSQLAPSDPTGGYSRPASKFRFSGPPPSGLHLYVGLPCPWAHRTLIVRALKGLEDSVPVSVASPGMDGSWEFKRVGDTGRAISPSLDKANGCKTLKEVYRLRSGGYDGRSTVPMLWDKDSKDVVCNESYDIIQLFNSGLNGLAHNPDLDLSPPELKDKIEEWYQVIYPTVNNGVYRCGFAQSQEAYDKAVNELFCTLDKLENHLSNSRYLCGDALTLVDICLFTTLIRFDIAYNVLFKCTKKKLYEYTNLHAYMRDIYQIPKVADTCNFQEIMDGYYKTLFPLNPGSIRPIMPSTSEHEILCRPHGRESLSSSTEPVFVK*