AlfalfaGEDB | Msa0994250

M. sativa cultivar zhongmu-4 / Msa0994250

KEGG: -
GO: GO:0000302 GO:0001101 GO:0006950 GO:0006979 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009611 GO:0009628 GO:0010035 GO:0010193 GO:0010224 GO:0042221 GO:0042493 GO:0046677 GO:0050896 GO:1901700
PFAM: PF05542.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0994250	XP_013452719.1	93.571	420	24	2	1	419	1	418	0.0	777

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0994250	sp\|Q9LVJ0\|UVB31_ARATH	66.760	358	112	4	65	419	68	421	2.09e-150	436

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0994250	A0A072UAR1	93.571	420	24	2	1	419	1	418	0.0	777

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0012200	Msa0994250	-0.813185	2.909317e-51	-8.615850e-47
Msa0025290	Msa0994250	0.800782	1.226474e-48	-8.615850e-47
Msa0027250	Msa0994250	0.828381	9.279161e-55	-8.615850e-47
Msa0072600	Msa0994250	0.815274	1.005531e-51	-8.615850e-47
Msa0075160	Msa0994250	0.801635	8.205007e-49	-8.615850e-47
Msa0093950	Msa0994250	0.806361	8.539073e-50	-8.615850e-47
Msa0123000	Msa0994250	0.838389	2.960486e-57	-8.615850e-47
Msa0167500	Msa0994250	0.873466	1.438899e-67	-8.615850e-47
Msa0168410	Msa0994250	0.811131	8.163243e-51	-8.615850e-47
Msa0220400	Msa0994250	0.802035	6.791388e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0994250	MtrunA17_Chr6g0479321	93.571	420	24	2	1	419	1	418	0.0	777
Msa0994250	MtrunA17_Chr8g0393251	69.296	355	105	3	69	419	67	421	2.44e-166	473
Msa0994250	MtrunA17_Chr5g0410131	42.890	429	212	12	1	417	1	408	3.88e-105	317
Msa0994250	MtrunA17_Chr8g0339211	32.479	351	217	6	69	414	32	367	2.02e-53	182

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0994250	AT1G48450.1	64.578	367	115	5	63	419	62	423	3.04e-155	446
Msa0994250	AT3G17800.1	66.760	358	112	4	65	419	68	421	2.12e-151	436
Msa0994250	AT3G17800.2	66.760	358	112	4	65	419	74	427	4.96e-151	435
Msa0994250	AT1G32160.1	46.089	358	180	5	64	417	56	404	2.37e-102	310
Msa0994250	AT1G48450.3	64.378	233	71	4	63	288	62	289	2.79e-93	284
Msa0994250	AT1G48450.2	64.378	233	71	4	63	288	62	289	5.30e-93	284
Msa0994250	AT3G07310.1	34.409	372	193	8	58	419	26	356	1.66e-54	185
Msa0994250	AT3G07310.2	35.145	276	135	5	144	414	11	247	3.29e-45	157
Msa0994250	AT5G48590.1	35.174	344	153	9	79	414	47	328	2.04e-44	158

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Find 150 sgRNAs with CRISPR-Local

Find 333 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAACTAGTGATAAACTC+TGG	0.596572	6_4:+68704291	None:intergenic
AAAGAAAAGCCTTCTGCTTC+AGG	0.311495	6_4:-68707392	Msa0994250:CDS
AAATTGTTATAACACCAGAG+GGG	0.801812	6_4:-68704711	Msa0994250:CDS
AAGAGTACTTTGTGGGAAAT+GGG	0.396771	6_4:+68709473	None:intergenic
AAGCCACTTGGCCCTACTTC+TGG	0.226525	6_4:-68705157	Msa0994250:CDS
AAGCGAAGATGGAAAACTTG+AGG	0.605727	6_4:-68705214	Msa0994250:CDS
AAGCTGTGAACTTATTTGTA+AGG	0.399234	6_4:+68704332	None:intergenic
AAGGGAAACGGTGGAACGTC+CGG	0.448939	6_4:+68709277	None:intergenic
AAGTCAGTTCCTGAAGCAGA+AGG	0.615870	6_4:+68707383	None:intergenic
AATCATACTGAAGCATTGTT+TGG	0.374610	6_4:-68704742	Msa0994250:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTCGGTACTTATTAATTAGA+AGG	+	chr6_4:68704044-68704063	None:intergenic	30.0%
GCGTAAAACAAAATTATGGT+CGG	+	chr6_4:68704062-68704081	None:intergenic	30.0%
GAAATGGGAGAGATAATATA+TGG	+	chr6_4:68704172-68704191	None:intergenic	30.0%
GTTGAATGAACGAAGAAAAA+AGG	+	chr6_4:68704247-68704266	None:intergenic	30.0%
GAATTGCATGTTGAAATTGA+TGG	-	chr6_4:68704563-68704582	Msa0994250:exon	30.0%
AGGACAAATATTTGATCCTA+TGG	-	chr6_4:68704643-68704662	Msa0994250:CDS	30.0%
GTCAACAGCCATAAAAATTT+GGG	+	chr6_4:68704835-68704854	None:intergenic	30.0%
TGTCAACAGCCATAAAAATT+TGG	+	chr6_4:68704836-68704855	None:intergenic	30.0%
TAATAGTTTAGGGACCAAAT+TGG	+	chr6_4:68704919-68704938	None:intergenic	30.0%
GTGTTTATTGTAAGGTGTAT+CGG	-	chr6_4:68705308-68705327	Msa0994250:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	68704030	68709649	68704030	ID=Msa0994250;Name=Msa0994250
chr6_4	mRNA	68704030	68709649	68704030	ID=Msa0994250-mRNA-1;Parent=Msa0994250;Name=Msa0994250-mRNA-1;_AED=0.03;_eAED=0.03;_QI=175\|1\|1\|1\|0.66\|0.5\|4\|537\|419
chr6_4	exon	68704030	68705383	68704030	ID=Msa0994250-mRNA-1:exon:12672;Parent=Msa0994250-mRNA-1
chr6_4	exon	68707371	68707678	68707371	ID=Msa0994250-mRNA-1:exon:12671;Parent=Msa0994250-mRNA-1
chr6_4	exon	68709247	68709387	68709247	ID=Msa0994250-mRNA-1:exon:12670;Parent=Msa0994250-mRNA-1
chr6_4	exon	68709481	68709649	68709481	ID=Msa0994250-mRNA-1:exon:12669;Parent=Msa0994250-mRNA-1
chr6_4	five_prime_UTR	68709481	68709649	68709481	ID=Msa0994250-mRNA-1:five_prime_utr;Parent=Msa0994250-mRNA-1
chr6_4	five_prime_UTR	68709382	68709387	68709382	ID=Msa0994250-mRNA-1:five_prime_utr;Parent=Msa0994250-mRNA-1
chr6_4	CDS	68709247	68709381	68709247	ID=Msa0994250-mRNA-1:cds;Parent=Msa0994250-mRNA-1
chr6_4	CDS	68707371	68707678	68707371	ID=Msa0994250-mRNA-1:cds;Parent=Msa0994250-mRNA-1
chr6_4	CDS	68704567	68705383	68704567	ID=Msa0994250-mRNA-1:cds;Parent=Msa0994250-mRNA-1
chr6_4	three_prime_UTR	68704030	68704566	68704030	ID=Msa0994250-mRNA-1:three_prime_utr;Parent=Msa0994250-mRNA-1

Gene Sequence

>Msa0994250

ATGGAAGCCACACGCACGGCGTTAAACTTAACGGCAACTGTTCTTCCGTCATCTGCACGGCCGTGTAAGCCGTCAATGTTCGCCGGACGTTCCACCGTTTCCCTTTTCCGTTCCAATTTACCGCTGTCCTGTAAGCTGCACACTTCTGTACCTAACTCCATGCAAGGGAATGGAAGGAAATTTTCTATTGGAAGTAGAAGGGGTCTTGTGGTTCGAGCTGCATCATCATCATCATCTGCAGAGTCATCTGGATCAAGTTCTAATATTGCCCCACTAAAGCTCGAGTCTCCAGTAGGGCAGTTTCTCTCTCAGATTTTGGTTAGTCACCCACATCTCATGTCTGCTGCAGTAGAGCGACAGCTAGAGCAATTCCAATCTGATCGTGATGGTTATGAACAAAAAGAAAAGCCTTCTGCTTCAGGAACTGACTTAGTTTTGTACAGGAGAATTGCTGAGGTAAAGGCGAAAGAGAGGAGAAAAGCTATAGAAGAAATATTGTACACATTGGTAGTGCAGAAATTTATGGATGCCAATGTTTCTTTAGTACCCTCCATAACGCCACATCCTTCTGGTCAAGTTGATTCATGGCCAAGCGAAGATGGAAAACTTGAGGATCTTCACTCGCGTGAAGCCTATGTGTTGATCGAAAGCCACTTGGCCCTACTTCTGGGTAACCGATCAGGGGATTCAAAATCCGTAGCTCAGATCAGCAAACTAAGGGTAGGACAGGTCTATGCTGCGTCAGTAATGTATGGATACTTTCTCAAGCGTGTTGTCCAACGGTTCCAGCTGGAAAAGACAATAAAAAATCTACCTGATGCAGAAGAGAAAACTATTAGCCAAACTTTGGAAGACGAAACAAGAATCGCTGGTCTTGAGTTCCCTTCTCAAGTTATGTCCCACCCCGAAGTCCCTGCTTGGCTTGAGAGTGGCATCAGTTCTGGTGCAAATGGTCAGGAGATAACAGTGTCTAGGTTGCGGTCCTATATGATGTCCTTTGATATCGAGACATTACAGAGATATGCAACAATTAGATCCAAAGAGGCCGTCAGCATCATTGAGAATCATACTGAAGCATTGTTTGGTAGACCGGAAATTGTTATAACACCAGAGGGGAAAATTAATTCTTCAAAAGATGAAATCATCAAAATTAGCATTGGTGGTTTGAAAAGACTTGTTTTAGAAGCTGTTACTTTTGGTTCTTTTCTTTGGGATGTTGAGAGCTATGTTGACTCAAGGTACCATTTTGTCCTAAACTGA

Protein sequence

>Msa0994250

MEATRTALNLTATVLPSSARPCKPSMFAGRSTVSLFRSNLPLSCKLHTSVPNSMQGNGRKFSIGSRRGLVVRAASSSSSAESSGSSSNIAPLKLESPVGQFLSQILVSHPHLMSAAVERQLEQFQSDRDGYEQKEKPSASGTDLVLYRRIAEVKAKERRKAIEEILYTLVVQKFMDANVSLVPSITPHPSGQVDSWPSEDGKLEDLHSREAYVLIESHLALLLGNRSGDSKSVAQISKLRVGQVYAASVMYGYFLKRVVQRFQLEKTIKNLPDAEEKTISQTLEDETRIAGLEFPSQVMSHPEVPAWLESGISSGANGQEITVSRLRSYMMSFDIETLQRYATIRSKEAVSIIENHTEALFGRPEIVITPEGKINSSKDEIIKISIGGLKRLVLEAVTFGSFLWDVESYVDSRYHFVLN*