Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0027250 | XP_013468440.2 | 82.323 | 396 | 15 | 3 | 12 | 352 | 16 | 411 | 0.0 | 627 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0027250 | sp|P42620|YQJG_ECOLI | 37.237 | 333 | 131 | 10 | 73 | 340 | 5 | 324 | 4.25e-56 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027250 | Msa0075160 | 0.887594 | 1.244579e-72 | -8.615850e-47 |
| Msa0027250 | Msa0123000 | 0.895142 | 1.269052e-75 | -8.615850e-47 |
| Msa0027250 | Msa0126000 | 0.810740 | 9.919380e-51 | -8.615850e-47 |
| Msa0027250 | Msa0167500 | 0.939601 | 9.654288e-100 | -8.615850e-47 |
| Msa0027250 | Msa0168410 | 0.875726 | 2.455455e-68 | -8.615850e-47 |
| Msa0027250 | Msa0299530 | 0.800695 | 1.277468e-48 | -8.615850e-47 |
| Msa0027250 | Msa0542060 | 0.882010 | 1.489949e-70 | -8.615850e-47 |
| Msa0027250 | Msa0645800 | 0.878530 | 2.606962e-69 | -8.615850e-47 |
| Msa0027250 | Msa0654410 | 0.838868 | 2.226104e-57 | -8.615850e-47 |
| Msa0027250 | Msa0685110 | 0.881024 | 3.384133e-70 | -8.615850e-47 |
| Msa0027250 | Msa0685500 | 0.880911 | 3.716263e-70 | -8.615850e-47 |
| Msa0027250 | Msa0719900 | 0.820249 | 7.578046e-53 | -8.615850e-47 |
| Msa0027250 | Msa0804690 | 0.813549 | 2.420180e-51 | -8.615850e-47 |
| Msa0027250 | Msa0922100 | 0.846317 | 2.343532e-59 | -8.615850e-47 |
| Msa0027250 | Msa0994250 | 0.828381 | 9.279161e-55 | -8.615850e-47 |
| Msa0027250 | Msa1163190 | 0.846130 | 2.634284e-59 | -8.615850e-47 |
| Msa0027250 | Msa1173800 | -0.830679 | 2.563602e-55 | -8.615850e-47 |
| Msa0027250 | Msa1224540 | -0.802785 | 4.758786e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0027250 | MtrunA17_Chr1g0183331 | 82.323 | 396 | 15 | 3 | 12 | 352 | 16 | 411 | 0.0 | 627 |
| Msa0027250 | MtrunA17_Chr4g0043651 | 36.364 | 330 | 139 | 6 | 82 | 344 | 30 | 355 | 2.64e-58 | 192 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0027250 | AT5G44000.1 | 57.550 | 351 | 89 | 3 | 57 | 347 | 44 | 394 | 1.70e-139 | 402 |
| Msa0027250 | AT4G19880.1 | 35.882 | 340 | 147 | 6 | 71 | 343 | 20 | 355 | 8.71e-57 | 189 |
| Msa0027250 | AT5G45020.1 | 35.866 | 329 | 140 | 6 | 83 | 344 | 1 | 325 | 1.21e-56 | 187 |
| Msa0027250 | AT5G45020.2 | 35.866 | 329 | 140 | 6 | 83 | 344 | 1 | 325 | 1.21e-56 | 187 |
| Msa0027250 | AT5G44990.2 | 35.238 | 315 | 133 | 6 | 96 | 343 | 11 | 321 | 8.04e-53 | 178 |
| Msa0027250 | AT5G44990.1 | 35.238 | 315 | 133 | 6 | 96 | 343 | 11 | 321 | 8.04e-53 | 178 |
| Msa0027250 | AT4G19880.2 | 33.333 | 366 | 147 | 7 | 71 | 343 | 20 | 381 | 2.49e-51 | 175 |
| Msa0027250 | AT5G44990.3 | 41.743 | 218 | 109 | 3 | 140 | 343 | 25 | 238 | 3.86e-49 | 166 |
| Msa0027250 | AT4G19880.3 | 35.135 | 259 | 101 | 5 | 71 | 262 | 20 | 278 | 4.07e-38 | 139 |
| Msa0027250 | AT5G44990.4 | 32.210 | 267 | 105 | 7 | 96 | 295 | 11 | 268 | 6.47e-36 | 132 |
Find 128 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTTAATTCCGGGTTAAA+TGG | 0.145587 | 1_1:-51508067 | Msa0027250:CDS |
| CCGCTTTATCATATGCTTCT+TGG | 0.182145 | 1_1:+51507639 | None:intergenic |
| TGAACCAGTATTTGTTAAAT+AGG | 0.222094 | 1_1:-51507151 | None:intergenic |
| AGACTTTGAAGGAAGTTTAT+AGG | 0.256685 | 1_1:-51508189 | Msa0027250:intron |
| ATAATTCAATTGTTTAATTC+CGG | 0.258778 | 1_1:-51508076 | Msa0027250:CDS |
| CTCATTACATACAACATCTT+TGG | 0.263092 | 1_1:+51508108 | None:intergenic |
| ATTACAAGTATCTGCAACTT+TGG | 0.276080 | 1_1:+51507311 | None:intergenic |
| TCTTTCACCACCCGAGTTAA+AGG | 0.284660 | 1_1:-51508020 | Msa0027250:CDS |
| TGGACCGGAGAATCGGAATT+TGG | 0.312564 | 1_1:+51509635 | None:intergenic |
| ATTGCCTATTTAACAAATAC+TGG | 0.329847 | 1_1:+51507147 | None:intergenic |
| TAATTCAATTGTTTAATTCC+GGG | 0.335485 | 1_1:-51508075 | Msa0027250:CDS |
| GAGCTGCCACGTGGAGTTCC+AGG | 0.336140 | 1_1:+51509713 | None:intergenic |
| GTTCTGTTACAAAACTTCTC+TGG | 0.344517 | 1_1:-51509782 | Msa0027250:CDS |
| TCTGAAGTTGAAGGCATAAT+TGG | 0.346959 | 1_1:+51507225 | None:intergenic |
| GACAAGGTGGTGTGAGGAAG+AGG | 0.351548 | 1_1:+51509917 | None:intergenic |
| CTGGGGCCGGTCCCTTCCAC+CGG | 0.357469 | 1_1:-51509763 | Msa0027250:CDS |
| TCGGAATTTGGAAGCGGGTC+TGG | 0.361164 | 1_1:+51509647 | None:intergenic |
| ATACTCATACAACTTCTTCT+TGG | 0.361565 | 1_1:+51507466 | None:intergenic |
| TCCCTGGATTGAGAGGAAAA+AGG | 0.376331 | 1_1:+51507256 | None:intergenic |
| CTGAGAAGGGGTGGGTATGA+TGG | 0.376932 | 1_1:-51508166 | Msa0027250:CDS |
| AAGATCCAAGTCCGGGTTAT+GGG | 0.387190 | 1_1:+51508039 | None:intergenic |
| TTACAAGTATCTGCAACTTT+GGG | 0.397228 | 1_1:+51507312 | None:intergenic |
| GGTGGGCCCACGGGCATGGC+AGG | 0.401801 | 1_1:+51509583 | None:intergenic |
| GTCTGTTTACTACTTTGATT+CGG | 0.402179 | 1_1:-51507523 | Msa0027250:CDS |
| AAAGATCCAAGTCCGGGTTA+TGG | 0.407434 | 1_1:+51508038 | None:intergenic |
| GGAATATCCGCCGGTGGGGT+CGG | 0.408123 | 1_1:+51509668 | None:intergenic |
| TTCTGTTACAAAACTTCTCT+GGG | 0.408913 | 1_1:-51509781 | Msa0027250:CDS |
| TTCTTTGCATGCCTCATGGC+AGG | 0.410450 | 1_1:-51507194 | Msa0027250:CDS |
| CTACATGCGTGACATTTATC+AGG | 0.410736 | 1_1:-51507429 | Msa0027250:intron |
| CGACAACCACTTTCCGCAAC+CGG | 0.426378 | 1_1:-51509884 | Msa0027250:CDS |
| ATTTCATGCTCTGAAGTTGA+AGG | 0.430518 | 1_1:+51507216 | None:intergenic |
| TGTTTAATTCCGGGTTAAAT+GGG | 0.435774 | 1_1:-51508066 | Msa0027250:CDS |
| CTGGTTCAGTTGATGATGAT+AGG | 0.444961 | 1_1:+51507166 | None:intergenic |
| AGAACGGATGAGGGAACTTC+CGG | 0.445710 | 1_1:+51509854 | None:intergenic |
| TATCCGCCGGTGGGGTCGGA+GGG | 0.453806 | 1_1:+51509672 | None:intergenic |
| TTCCGGTGAGTCTCCGGTTG+CGG | 0.460175 | 1_1:+51509871 | None:intergenic |
| TCACCACCGTCCGCACCGCC+TGG | 0.466420 | 1_1:-51509731 | Msa0027250:CDS |
| TGTTGTCGAGGGACATAGTC+AGG | 0.467332 | 1_1:+51509829 | None:intergenic |
| GTTGGCCCATAACCCGGACT+TGG | 0.471548 | 1_1:-51508044 | Msa0027250:CDS |
| ATATCCGCCGGTGGGGTCGG+AGG | 0.471724 | 1_1:+51509671 | None:intergenic |
| GGAAGTTTATAGGCTGAGAA+GGG | 0.472235 | 1_1:-51508179 | Msa0027250:CDS |
| GAAGACCCGGTGGAAGGGAC+CGG | 0.475589 | 1_1:+51509757 | None:intergenic |
| TCGGCGGTGGACCGGAGAAT+CGG | 0.477661 | 1_1:+51509628 | None:intergenic |
| CTCAATCTTATCCTTTAACT+CGG | 0.479397 | 1_1:+51508009 | None:intergenic |
| TCAATCTTATCCTTTAACTC+GGG | 0.490673 | 1_1:+51508010 | None:intergenic |
| GGGAACTTCCGGTGAGTCTC+CGG | 0.493773 | 1_1:+51509865 | None:intergenic |
| GTTTATAGGCTGAGAAGGGG+TGG | 0.494511 | 1_1:-51508175 | Msa0027250:CDS |
| TAATTCCGGGTTAAATGGGT+TGG | 0.498858 | 1_1:-51508062 | Msa0027250:CDS |
| AGGAAGTTTATAGGCTGAGA+AGG | 0.505287 | 1_1:-51508180 | Msa0027250:CDS |
| TAGTCAGGCGAGAACGGATG+AGG | 0.506765 | 1_1:+51509844 | None:intergenic |
| GTACGGTGGGCCCACGGGCA+TGG | 0.510535 | 1_1:+51509579 | None:intergenic |
| TGGTTCAGTTGATGATGATA+GGG | 0.511787 | 1_1:+51507167 | None:intergenic |
| CTGATAAATGTCACGCATGT+AGG | 0.512267 | 1_1:+51507430 | None:intergenic |
| GACGAGAAGACCCGGTGGAA+GGG | 0.515720 | 1_1:+51509752 | None:intergenic |
| TTACAAAACTTCTCTGGGGC+CGG | 0.517177 | 1_1:-51509776 | Msa0027250:CDS |
| GAGACCACTCGGCGGTGGAC+CGG | 0.518549 | 1_1:+51509620 | None:intergenic |
| CGTTGGCCTGCCATGCCCGT+GGG | 0.519717 | 1_1:-51509589 | Msa0027250:CDS |
| ACGTTGGCCTGCCATGCCCG+TGG | 0.522921 | 1_1:-51509590 | Msa0027250:CDS |
| ATCTTATCCTTTAACTCGGG+TGG | 0.523502 | 1_1:+51508013 | None:intergenic |
| AGTCCGTGCACTCAAAGGCT+TGG | 0.523773 | 1_1:-51509550 | Msa0027250:CDS |
| GGTGGTGAAAGATCCAAGTC+CGG | 0.525217 | 1_1:+51508031 | None:intergenic |
| GGTCTGGAATATCCGCCGGT+GGG | 0.527132 | 1_1:+51509663 | None:intergenic |
| TGAGAGTACGGTGGGCCCAC+GGG | 0.529134 | 1_1:+51509574 | None:intergenic |
| ATGAGAGTACGGTGGGCCCA+CGG | 0.532271 | 1_1:+51509573 | None:intergenic |
| GGAATTGTTGTTGTTGTCGA+GGG | 0.533030 | 1_1:+51509818 | None:intergenic |
| GCTTCCAAATTCCGATTCTC+CGG | 0.533829 | 1_1:-51509639 | Msa0027250:CDS |
| TTCCGCAACCGGAGACTCAC+CGG | 0.534590 | 1_1:-51509873 | Msa0027250:CDS |
| CGGTTGCGGAAAGTGGTTGT+CGG | 0.536348 | 1_1:+51509885 | None:intergenic |
| TGGGGCCGGTCCCTTCCACC+GGG | 0.538373 | 1_1:-51509762 | Msa0027250:CDS |
| CTTCCAAGCCTTTGAGTGCA+CGG | 0.538720 | 1_1:+51509547 | None:intergenic |
| CTCATAGTCCGTGCACTCAA+AGG | 0.550431 | 1_1:-51509555 | Msa0027250:CDS |
| AAATGGGTTGGCCCATAACC+CGG | 0.550836 | 1_1:-51508050 | Msa0027250:CDS |
| TCAAATTCTCGCTATTTGTG+TGG | 0.552114 | 1_1:-51507572 | Msa0027250:CDS |
| ACGCATGTAGGCATGTAGAT+TGG | 0.554041 | 1_1:+51507442 | None:intergenic |
| CTCGCTCCCTCCGACCCCAC+CGG | 0.555197 | 1_1:-51509678 | Msa0027250:CDS |
| AGGAATTGTTGTTGTTGTCG+AGG | 0.555266 | 1_1:+51509817 | None:intergenic |
| GAGTCTCCGGTTGCGGAAAG+TGG | 0.555872 | 1_1:+51509878 | None:intergenic |
| GTGGTGAAAGATCCAAGTCC+GGG | 0.556634 | 1_1:+51508032 | None:intergenic |
| AGGTGGAGACCACTCGGCGG+TGG | 0.556945 | 1_1:+51509615 | None:intergenic |
| AACAGAACTCAGTAGGGAAG+AGG | 0.559020 | 1_1:+51509797 | None:intergenic |
| GAAATTCTTTGCATGCCTCA+TGG | 0.561075 | 1_1:-51507198 | Msa0027250:CDS |
| GGGACATAGTCAGGCGAGAA+CGG | 0.562237 | 1_1:+51509838 | None:intergenic |
| GTTCCAGGCGGTGCGGACGG+TGG | 0.565288 | 1_1:+51509728 | None:intergenic |
| TCTTTGCATGCCTCATGGCA+GGG | 0.567304 | 1_1:-51507193 | Msa0027250:CDS |
| GGAGTTCCAGGCGGTGCGGA+CGG | 0.570604 | 1_1:+51509725 | None:intergenic |
| GAGTCTTTGTTCCACAACAT+TGG | 0.572372 | 1_1:+51508130 | None:intergenic |
| GAGAATCGGAATTTGGAAGC+GGG | 0.577136 | 1_1:+51509642 | None:intergenic |
| CTAATGCTCCCTGGATTGAG+AGG | 0.577711 | 1_1:+51507249 | None:intergenic |
| GTCTGGAATATCCGCCGGTG+GGG | 0.581278 | 1_1:+51509664 | None:intergenic |
| GGAGAATCGGAATTTGGAAG+CGG | 0.584387 | 1_1:+51509641 | None:intergenic |
| AGCGGGTCTGGAATATCCGC+CGG | 0.585759 | 1_1:+51509659 | None:intergenic |
| CGATGCCACTGACACCGGTA+CGG | 0.586344 | 1_1:+51509521 | None:intergenic |
| GGGTCTGGAATATCCGCCGG+TGG | 0.588168 | 1_1:+51509662 | None:intergenic |
| TGACGAGAAGACCCGGTGGA+AGG | 0.588522 | 1_1:+51509751 | None:intergenic |
| GATCCACTGTGCCAATGTTG+TGG | 0.590586 | 1_1:-51508141 | Msa0027250:CDS |
| ACGTAGAGGTGGAGACCACT+CGG | 0.594306 | 1_1:+51509609 | None:intergenic |
| CGAGTTAAAGGATAAGATTG+AGG | 0.599820 | 1_1:-51508008 | Msa0027250:CDS |
| TTTATAGGCTGAGAAGGGGT+GGG | 0.603011 | 1_1:-51508174 | Msa0027250:CDS |
| ATAATTGGTCTAATGCTCCC+TGG | 0.605043 | 1_1:+51507240 | None:intergenic |
| GTGCACGGACTATGAGAGTA+CGG | 0.611941 | 1_1:+51509562 | None:intergenic |
| ATGGCAGGCCAACGTAGAGG+TGG | 0.617427 | 1_1:+51509598 | None:intergenic |
| ACGGTGGTGACGAGAAGACC+CGG | 0.617961 | 1_1:+51509744 | None:intergenic |
| ATGGGCCAACCCATTTAACC+CGG | 0.621534 | 1_1:+51508057 | None:intergenic |
| CCAAGAAGCATATGATAAAG+CGG | 0.622342 | 1_1:-51507639 | Msa0027250:CDS |
| GCTCCCTCCGACCCCACCGG+CGG | 0.625949 | 1_1:-51509675 | Msa0027250:CDS |
| TAAAGGATAAGATTGAGGAA+TGG | 0.626039 | 1_1:-51508003 | Msa0027250:intron |
| ACAAGGTGGTGTGAGGAAGA+GGG | 0.626050 | 1_1:+51509918 | None:intergenic |
| AGTGGTCTCCACCTCTACGT+TGG | 0.627837 | 1_1:-51509606 | Msa0027250:CDS |
| GAAGTTTATAGGCTGAGAAG+GGG | 0.631269 | 1_1:-51508178 | Msa0027250:CDS |
| AGTCAGGCGAGAACGGATGA+GGG | 0.643628 | 1_1:+51509845 | None:intergenic |
| GGCATGGCAGGCCAACGTAG+AGG | 0.643969 | 1_1:+51509595 | None:intergenic |
| AGGCTTGGAAGATTCCGTAC+CGG | 0.644423 | 1_1:-51509535 | Msa0027250:intron |
| TTGCGGAAAGTGGTTGTCGG+AGG | 0.645779 | 1_1:+51509888 | None:intergenic |
| ACGGACTATGAGAGTACGGT+GGG | 0.649294 | 1_1:+51509566 | None:intergenic |
| AATGACGACAAGGTGGTGTG+AGG | 0.649943 | 1_1:+51509911 | None:intergenic |
| GTTCCACAACATTGGCACAG+TGG | 0.661542 | 1_1:+51508138 | None:intergenic |
| TTGTCGGAGGAATGACGACA+AGG | 0.674643 | 1_1:+51509901 | None:intergenic |
| ACGTGGAGTTCCAGGCGGTG+CGG | 0.675896 | 1_1:+51509721 | None:intergenic |
| TTCTCCGGTCCACCGCCGAG+TGG | 0.686008 | 1_1:-51509624 | Msa0027250:CDS |
| AGACATCATGAGCTGCCACG+TGG | 0.697920 | 1_1:+51509704 | None:intergenic |
| CTGCCACGTGGAGTTCCAGG+CGG | 0.705558 | 1_1:+51509716 | None:intergenic |
| GATAGGGATTCCCTGCCATG+AGG | 0.706486 | 1_1:+51507183 | None:intergenic |
| CACGGACTATGAGAGTACGG+TGG | 0.713455 | 1_1:+51509565 | None:intergenic |
| TCTGTTACAAAACTTCTCTG+GGG | 0.722777 | 1_1:-51509780 | Msa0027250:CDS |
| TCGGAGGAATGACGACAAGG+TGG | 0.725756 | 1_1:+51509904 | None:intergenic |
| GCACCGCCTGGAACTCCACG+TGG | 0.732654 | 1_1:-51509719 | Msa0027250:CDS |
| GTGGTGACGAGAAGACCCGG+TGG | 0.741723 | 1_1:+51509747 | None:intergenic |
| TAGAGGTGGAGACCACTCGG+CGG | 0.783474 | 1_1:+51509612 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAAAAAA+AGG | - | chr1_1:51508771-51508790 | Msa0027250:intron | 0.0% |
| !! | AAAAAAAAAAAAAAAAAAAA+GGG | - | chr1_1:51508771-51508790 | Msa0027250:intron | 0.0% |
| !!! | TGTTTTACTTTTATAAGAAT+TGG | + | chr1_1:51507900-51507919 | None:intergenic | 15.0% |
| !!! | ATTGATTGAAAATGAATTTT+TGG | - | chr1_1:51508111-51508130 | Msa0027250:CDS | 15.0% |
| !!! | TGTTTTAGGTTTTTAAAATT+GGG | + | chr1_1:51508367-51508386 | None:intergenic | 15.0% |
| !!! | TTGTTTTAGGTTTTTAAAAT+TGG | + | chr1_1:51508368-51508387 | None:intergenic | 15.0% |
| !! | TCAACAATTAATGATATATA+TGG | + | chr1_1:51508699-51508718 | None:intergenic | 15.0% |
| !! | ATAATTCAATTGTTTAATTC+CGG | - | chr1_1:51509015-51509034 | Msa0027250:intron | 15.0% |
| !!! | TTGTAATTTTCAAGAAATTA+TGG | - | chr1_1:51509796-51509815 | Msa0027250:CDS | 15.0% |
| !! | CTTATATTTGAATGAACATA+AGG | + | chr1_1:51507991-51508010 | None:intergenic | 20.0% |
| !! | AGGTTTATCATATAATGATA+AGG | + | chr1_1:51508068-51508087 | None:intergenic | 20.0% |
| !! | ATAATCATTTCATCATAAAG+AGG | + | chr1_1:51508088-51508107 | None:intergenic | 20.0% |
| !! | GTTAATTTCTAATTACTAAG+TGG | + | chr1_1:51508202-51508221 | None:intergenic | 20.0% |
| !!! | GTTTTATATTGATTTTGAGT+AGG | + | chr1_1:51508293-51508312 | None:intergenic | 20.0% |
| !!! | GTTTTAGGTTTTTAAAATTG+GGG | + | chr1_1:51508366-51508385 | None:intergenic | 20.0% |
| !!! | ATTCTTCAATTGATTGTTTT+AGG | + | chr1_1:51508381-51508400 | None:intergenic | 20.0% |
| !!! | AAATTTGAAATTAAGAGAGA+TGG | - | chr1_1:51508453-51508472 | Msa0027250:intron | 20.0% |
| !! | TAATTCAATTGTTTAATTCC+GGG | - | chr1_1:51509016-51509035 | Msa0027250:intron | 20.0% |
| !!! | TCATCATTGATTATTGAATT+GGG | - | chr1_1:51509385-51509404 | Msa0027250:intron | 20.0% |
| !!! | AATTTTCAAGAAATTATGGA+TGG | - | chr1_1:51509800-51509819 | Msa0027250:CDS | 20.0% |
| !! | ATTTTATTCATCGACAAGTT+AGG | - | chr1_1:51507753-51507772 | Msa0027250:intron | 25.0% |
| ! | ATAAGTATGCAAAATGTGTA+CGG | - | chr1_1:51508006-51508025 | Msa0027250:CDS | 25.0% |
| !!! | TTGGGGTTTTAAAATTGTTA+GGG | + | chr1_1:51508349-51508368 | None:intergenic | 25.0% |
| !!! | ATTGGGGTTTTAAAATTGTT+AGG | + | chr1_1:51508350-51508369 | None:intergenic | 25.0% |
| ! | AAACAATCAATTGAAGAATG+AGG | - | chr1_1:51508382-51508401 | Msa0027250:intron | 25.0% |
| ! | AACAATCAATTGAAGAATGA+GGG | - | chr1_1:51508383-51508402 | Msa0027250:intron | 25.0% |
| ! | CATTTGTTTATAATAGTGAC+CGG | + | chr1_1:51508625-51508644 | None:intergenic | 25.0% |
| !! | ATATATATGGTCTTTGTTGT+AGG | + | chr1_1:51508686-51508705 | None:intergenic | 25.0% |
| ! | TAAGCAAATGTTTACACTTT+AGG | + | chr1_1:51508727-51508746 | None:intergenic | 25.0% |
| !!! | TTTTTTTTATATACACCCTC+CGG | + | chr1_1:51508759-51508778 | None:intergenic | 25.0% |
| ! | ATATATCCAAATGTGAACAA+TGG | - | chr1_1:51509120-51509139 | Msa0027250:intron | 25.0% |
| !! | CTCATCATTGATTATTGAAT+TGG | - | chr1_1:51509384-51509403 | Msa0027250:intron | 25.0% |
| !!! | GCTTTGCTCAAATTTTTTTT+AGG | - | chr1_1:51509690-51509709 | Msa0027250:CDS | 25.0% |
| ! | TTTTGTAACAGAACTCAGTA+GGG | + | chr1_1:51507303-51507322 | None:intergenic | 30.0% |
| TTCTGTTACAAAACTTCTCT+GGG | - | chr1_1:51507310-51507329 | Msa0027250:CDS | 30.0% | |
| TAAGTATGCAAAATGTGTAC+GGG | - | chr1_1:51508007-51508026 | Msa0027250:CDS | 30.0% | |
| !! | AATTTTTGGATACGAAACAG+AGG | - | chr1_1:51508125-51508144 | Msa0027250:CDS | 30.0% |
| GTAAATGATTGATGTCACTA+AGG | - | chr1_1:51508320-51508339 | Msa0027250:intron | 30.0% | |
| ACAATCAATTGAAGAATGAG+GGG | - | chr1_1:51508384-51508403 | Msa0027250:intron | 30.0% | |
| !! | CTTTTGTTTAATATACCCTC+CGG | - | chr1_1:51508603-51508622 | Msa0027250:intron | 30.0% |
| CATTTGCTTATAATAGTGAC+CGG | - | chr1_1:51508737-51508756 | Msa0027250:intron | 30.0% | |
| ! | AGACTTTGAAGGAAGTTTAT+AGG | - | chr1_1:51508902-51508921 | Msa0027250:intron | 30.0% |
| CTCATTACATACAACATCTT+TGG | + | chr1_1:51508986-51509005 | None:intergenic | 30.0% | |
| TTGTTTAATTCCGGGTTAAA+TGG | - | chr1_1:51509024-51509043 | Msa0027250:intron | 30.0% | |
| TGTTTAATTCCGGGTTAAAT+GGG | - | chr1_1:51509025-51509044 | Msa0027250:intron | 30.0% | |
| TCAATCTTATCCTTTAACTC+GGG | + | chr1_1:51509084-51509103 | None:intergenic | 30.0% | |
| CTCAATCTTATCCTTTAACT+CGG | + | chr1_1:51509085-51509104 | None:intergenic | 30.0% | |
| TAAAGGATAAGATTGAGGAA+TGG | - | chr1_1:51509088-51509107 | Msa0027250:intron | 30.0% | |
| TGAAAATATTCGAGCATGTT+TGG | + | chr1_1:51509289-51509308 | None:intergenic | 30.0% | |
| ! | GTTTTGTACATTAGACAAGT+TGG | - | chr1_1:51509485-51509504 | Msa0027250:intron | 30.0% |
| GTCTGTTTACTACTTTGATT+CGG | - | chr1_1:51509568-51509587 | Msa0027250:CDS | 30.0% | |
| ATACTCATACAACTTCTTCT+TGG | + | chr1_1:51509628-51509647 | None:intergenic | 30.0% | |
| TTACAAGTATCTGCAACTTT+GGG | + | chr1_1:51509782-51509801 | None:intergenic | 30.0% | |
| ATTACAAGTATCTGCAACTT+TGG | + | chr1_1:51509783-51509802 | None:intergenic | 30.0% | |
| ! | GTTTTGTAACAGAACTCAGT+AGG | + | chr1_1:51507304-51507323 | None:intergenic | 35.0% |
| GTTCTGTTACAAAACTTCTC+TGG | - | chr1_1:51507309-51507328 | Msa0027250:CDS | 35.0% | |
| TCTGTTACAAAACTTCTCTG+GGG | - | chr1_1:51507311-51507330 | Msa0027250:CDS | 35.0% | |
| GTATTATACTTCGGCATCAT+AGG | + | chr1_1:51507871-51507890 | None:intergenic | 35.0% | |
| ATGCCGAAGTATAATACAAG+AGG | - | chr1_1:51507874-51507893 | Msa0027250:intron | 35.0% | |
| TGGCCTCTTGTATTATACTT+CGG | + | chr1_1:51507880-51507899 | None:intergenic | 35.0% | |
| CAACACGAATTCATTTCGAA+AGG | - | chr1_1:51508230-51508249 | Msa0027250:intron | 35.0% | |
| CAATCAATTGAAGAATGAGG+GGG | - | chr1_1:51508385-51508404 | Msa0027250:intron | 35.0% | |
| TATTCCAATTTCCTTCCTGT+AGG | + | chr1_1:51508546-51508565 | None:intergenic | 35.0% | |
| TGTTTATAATAGTGACCGGA+GGG | + | chr1_1:51508621-51508640 | None:intergenic | 35.0% | |
| TTGTTTATAATAGTGACCGG+AGG | + | chr1_1:51508622-51508641 | None:intergenic | 35.0% | |
| ! | AAAAAAAGGGGAAAAGCATG+TGG | - | chr1_1:51508794-51508813 | Msa0027250:intron | 35.0% |
| AATTAGTCCGAGTTTGGATA+AGG | - | chr1_1:51508867-51508886 | Msa0027250:intron | 35.0% | |
| CGAGTTAAAGGATAAGATTG+AGG | - | chr1_1:51509083-51509102 | Msa0027250:intron | 35.0% | |
| TACACACCATTGTTCACATT+TGG | + | chr1_1:51509129-51509148 | None:intergenic | 35.0% | |
| ATGTGAACAATGGTGTGTAT+AGG | - | chr1_1:51509130-51509149 | Msa0027250:intron | 35.0% | |
| CGATGAGTTTGAGAAAATCA+TGG | - | chr1_1:51509191-51509210 | Msa0027250:intron | 35.0% | |
| ! | GAAAATCATGGTGACACTTT+TGG | - | chr1_1:51509203-51509222 | Msa0027250:intron | 35.0% |
| ACGCTGAGTTAAACAAAATC+AGG | + | chr1_1:51509262-51509281 | None:intergenic | 35.0% | |
| ATGATGAATGTCTACTCCAA+TGG | + | chr1_1:51509351-51509370 | None:intergenic | 35.0% | |
| ATTGTTGCAATTTGCATTGC+AGG | - | chr1_1:51509412-51509431 | Msa0027250:intron | 35.0% | |
| ! | CCAAGAAGCATATGATAAAG+CGG | - | chr1_1:51509452-51509471 | Msa0027250:intron | 35.0% |
| TCAAATTCTCGCTATTTGTG+TGG | - | chr1_1:51509519-51509538 | Msa0027250:intron | 35.0% | |
| ! | TCTGAAGTTGAAGGCATAAT+TGG | + | chr1_1:51509869-51509888 | None:intergenic | 35.0% |
| !! | ATTTCATGCTCTGAAGTTGA+AGG | + | chr1_1:51509878-51509897 | None:intergenic | 35.0% |
| !! | TGGTTCAGTTGATGATGATA+GGG | + | chr1_1:51509927-51509946 | None:intergenic | 35.0% |
| ! | GGAATTGTTGTTGTTGTCGA+GGG | + | chr1_1:51507276-51507295 | None:intergenic | 40.0% |
| ! | AGGAATTGTTGTTGTTGTCG+AGG | + | chr1_1:51507277-51507296 | None:intergenic | 40.0% |
| ! | ATTCAAACGAGTTGGCGATA+CGG | - | chr1_1:51507616-51507635 | Msa0027250:CDS | 40.0% |
| ATCCAGACTTCAAGTATACG+TGG | - | chr1_1:51507653-51507672 | Msa0027250:CDS | 40.0% | |
| ! | ACAAAAAGCGCACCGTATAT+AGG | - | chr1_1:51507818-51507837 | Msa0027250:intron | 40.0% |
| TATCGCAAGAACACTGTTGT+TGG | + | chr1_1:51508179-51508198 | None:intergenic | 40.0% | |
| AACTCTCACTTCTCACTCTA+AGG | + | chr1_1:51508421-51508440 | None:intergenic | 40.0% | |
| AGAAGTGAGAGTTGAGAAGT+AGG | - | chr1_1:51508428-51508447 | Msa0027250:intron | 40.0% | |
| AGAGCTGAGATTGAAAGAGA+TGG | - | chr1_1:51508476-51508495 | Msa0027250:intron | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | - | chr1_1:51508740-51508759 | Msa0027250:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | - | chr1_1:51508741-51508760 | Msa0027250:intron | 40.0% | |
| GAATGGTTGCAAGACTTTGA+AGG | - | chr1_1:51508891-51508910 | Msa0027250:intron | 40.0% | |
| AGGAAGTTTATAGGCTGAGA+AGG | - | chr1_1:51508911-51508930 | Msa0027250:intron | 40.0% | |
| GGAAGTTTATAGGCTGAGAA+GGG | - | chr1_1:51508912-51508931 | Msa0027250:intron | 40.0% | |
| GAAGTTTATAGGCTGAGAAG+GGG | - | chr1_1:51508913-51508932 | Msa0027250:intron | 40.0% | |
| GAGTCTTTGTTCCACAACAT+TGG | + | chr1_1:51508964-51508983 | None:intergenic | 40.0% | |
| TAATTCCGGGTTAAATGGGT+TGG | - | chr1_1:51509029-51509048 | Msa0027250:intron | 40.0% | |
| ATCTTATCCTTTAACTCGGG+TGG | + | chr1_1:51509081-51509100 | None:intergenic | 40.0% | |
| !! | ATGAGTTGGAAGCATCCAAA+GGG | + | chr1_1:51509327-51509346 | None:intergenic | 40.0% |
| !! | TATGAGTTGGAAGCATCCAA+AGG | + | chr1_1:51509328-51509347 | None:intergenic | 40.0% |
| ATGCTTCCAACTCATACCAT+TGG | - | chr1_1:51509332-51509351 | Msa0027250:intron | 40.0% | |
| TCTACTCCAATGGTATGAGT+TGG | + | chr1_1:51509341-51509360 | None:intergenic | 40.0% | |
| CCGCTTTATCATATGCTTCT+TGG | + | chr1_1:51509455-51509474 | None:intergenic | 40.0% | |
| CTGATAAATGTCACGCATGT+AGG | + | chr1_1:51509664-51509683 | None:intergenic | 40.0% | |
| CTACATGCGTGACATTTATC+AGG | - | chr1_1:51509662-51509681 | Msa0027250:CDS | 40.0% | |
| ! | ATAATTGGTCTAATGCTCCC+TGG | + | chr1_1:51509854-51509873 | None:intergenic | 40.0% |
| GAAATTCTTTGCATGCCTCA+TGG | - | chr1_1:51509893-51509912 | Msa0027250:CDS | 40.0% | |
| !! | CTGGTTCAGTTGATGATGAT+AGG | + | chr1_1:51509928-51509947 | None:intergenic | 40.0% |
| AACAGAACTCAGTAGGGAAG+AGG | + | chr1_1:51507297-51507316 | None:intergenic | 45.0% | |
| !! | TTACAAAACTTCTCTGGGGC+CGG | - | chr1_1:51507315-51507334 | Msa0027250:CDS | 45.0% |
| GAGAATCGGAATTTGGAAGC+GGG | + | chr1_1:51507452-51507471 | None:intergenic | 45.0% | |
| GGAGAATCGGAATTTGGAAG+CGG | + | chr1_1:51507453-51507472 | None:intergenic | 45.0% | |
| GCTTCCAAATTCCGATTCTC+CGG | - | chr1_1:51507452-51507471 | Msa0027250:CDS | 45.0% | |
| TCGTGGGAATTCAAACGAGT+TGG | - | chr1_1:51507608-51507627 | Msa0027250:CDS | 45.0% | |
| ! | TTCAAACGAGTTGGCGATAC+GGG | - | chr1_1:51507617-51507636 | Msa0027250:CDS | 45.0% |
| CTCCACGTATACTTGAAGTC+TGG | + | chr1_1:51507658-51507677 | None:intergenic | 45.0% | |
| ! | AAAAGCGCACCGTATATAGG+CGG | - | chr1_1:51507821-51507840 | Msa0027250:intron | 45.0% |
| !! | AGGTAGAGGGTTTGGGATTT+TGG | + | chr1_1:51507851-51507870 | None:intergenic | 45.0% |
| GCATCATAGGTAGAGGGTTT+GGG | + | chr1_1:51507858-51507877 | None:intergenic | 45.0% | |
| ACTTCGGCATCATAGGTAGA+GGG | + | chr1_1:51507864-51507883 | None:intergenic | 45.0% | |
| TACTTCGGCATCATAGGTAG+AGG | + | chr1_1:51507865-51507884 | None:intergenic | 45.0% | |
| GCATCCTTCAAGCAGAACAT+AGG | + | chr1_1:51508157-51508176 | None:intergenic | 45.0% | |
| ATGGAGAGCTGAGAGAGAAA+GGG | - | chr1_1:51508495-51508514 | Msa0027250:intron | 45.0% | |
| GGGGCGTGTTTGTTTAGTTA+CGG | - | chr1_1:51508515-51508534 | Msa0027250:intron | 45.0% | |
| TTAGTTACGGTACAGCCTAC+AGG | - | chr1_1:51508528-51508547 | Msa0027250:intron | 45.0% | |
| ACAGCCTACAGGAAGGAAAT+TGG | - | chr1_1:51508539-51508558 | Msa0027250:intron | 45.0% | |
| !! | GATGCATGTAGGAGCATTGT+GGG | + | chr1_1:51508829-51508848 | None:intergenic | 45.0% |
| CCATTCGCCTTATCCAAACT+CGG | + | chr1_1:51508877-51508896 | None:intergenic | 45.0% | |
| TTTATAGGCTGAGAAGGGGT+GGG | - | chr1_1:51508917-51508936 | Msa0027250:intron | 45.0% | |
| AAGATCCAAGTCCGGGTTAT+GGG | + | chr1_1:51509055-51509074 | None:intergenic | 45.0% | |
| AAAGATCCAAGTCCGGGTTA+TGG | + | chr1_1:51509056-51509075 | None:intergenic | 45.0% | |
| TCTTTCACCACCCGAGTTAA+AGG | - | chr1_1:51509071-51509090 | Msa0027250:intron | 45.0% | |
| ACAACAGTTAGACCTCCCTT+TGG | - | chr1_1:51509309-51509328 | Msa0027250:intron | 45.0% | |
| TGCAATTTGCATTGCAGGTG+TGG | - | chr1_1:51509417-51509436 | Msa0027250:intron | 45.0% | |
| GCAATTTGCATTGCAGGTGT+GGG | - | chr1_1:51509418-51509437 | Msa0027250:intron | 45.0% | |
| ACGCATGTAGGCATGTAGAT+TGG | + | chr1_1:51509652-51509671 | None:intergenic | 45.0% | |
| GTTGTATGTGTTTCGTGCCT+TGG | - | chr1_1:51509749-51509768 | Msa0027250:CDS | 45.0% | |
| ! | CAACTTTGGGAATCTGTCCA+AGG | + | chr1_1:51509769-51509788 | None:intergenic | 45.0% |
| ! | ACCCTTTTTCCTCTCAATCC+AGG | - | chr1_1:51509833-51509852 | Msa0027250:CDS | 45.0% |
| CCCTGGATTGAGAGGAAAAA+GGG | + | chr1_1:51509837-51509856 | None:intergenic | 45.0% | |
| ! | CCCTTTTTCCTCTCAATCCA+GGG | - | chr1_1:51509834-51509853 | Msa0027250:CDS | 45.0% |
| TCCCTGGATTGAGAGGAAAA+AGG | + | chr1_1:51509838-51509857 | None:intergenic | 45.0% | |
| !! | AAAAAAAAAAAAAAAAAAAG+GGG | - | chr1_1:51508782-51508801 | Msa0027250:intron | 5.0% |
| ACAAGGTGGTGTGAGGAAGA+GGG | + | chr1_1:51507176-51507195 | None:intergenic | 50.0% | |
| AATGACGACAAGGTGGTGTG+AGG | + | chr1_1:51507183-51507202 | None:intergenic | 50.0% | |
| TTGTCGGAGGAATGACGACA+AGG | + | chr1_1:51507193-51507212 | None:intergenic | 50.0% | |
| AGAACGGATGAGGGAACTTC+CGG | + | chr1_1:51507240-51507259 | None:intergenic | 50.0% | |
| TGTTGTCGAGGGACATAGTC+AGG | + | chr1_1:51507265-51507284 | None:intergenic | 50.0% | |
| TGGACCGGAGAATCGGAATT+TGG | + | chr1_1:51507459-51507478 | None:intergenic | 50.0% | |
| ! | ACGGACTATGAGAGTACGGT+GGG | + | chr1_1:51507528-51507547 | None:intergenic | 50.0% |
| ! | GTGCACGGACTATGAGAGTA+CGG | + | chr1_1:51507532-51507551 | None:intergenic | 50.0% |
| CTCATAGTCCGTGCACTCAA+AGG | - | chr1_1:51507536-51507555 | Msa0027250:CDS | 50.0% | |
| CTTCCAAGCCTTTGAGTGCA+CGG | + | chr1_1:51507547-51507566 | None:intergenic | 50.0% | |
| AGGCTTGGAAGATTCCGTAC+CGG | - | chr1_1:51507556-51507575 | Msa0027250:CDS | 50.0% | |
| TAAGACACACCACCAACTCG+CGG | - | chr1_1:51507778-51507797 | Msa0027250:intron | 50.0% | |
| ! | TTTCCTGTTTTCCCGCGAGT+TGG | + | chr1_1:51507793-51507812 | None:intergenic | 50.0% |
| TTTGGCGTGCCGCCTATATA+CGG | + | chr1_1:51507833-51507852 | None:intergenic | 50.0% | |
| GGCATCATAGGTAGAGGGTT+TGG | + | chr1_1:51507859-51507878 | None:intergenic | 50.0% | |
| CCTTCAAGCAGAACATAGGC+TGG | + | chr1_1:51508153-51508172 | None:intergenic | 50.0% | |
| CCAGCCTATGTTCTGCTTGA+AGG | - | chr1_1:51508150-51508169 | Msa0027250:CDS | 50.0% | |
| GATGGAGAGCTGAGAGAGAA+AGG | - | chr1_1:51508494-51508513 | Msa0027250:intron | 50.0% | |
| TGGAGAGCTGAGAGAGAAAG+GGG | - | chr1_1:51508496-51508515 | Msa0027250:intron | 50.0% | |
| TTACGGTACAGCCTACAGGA+AGG | - | chr1_1:51508532-51508551 | Msa0027250:intron | 50.0% | |
| !! | GGATGCATGTAGGAGCATTG+TGG | + | chr1_1:51508830-51508849 | None:intergenic | 50.0% |
| TCGGGCAATTAGTCCGAGTT+TGG | - | chr1_1:51508861-51508880 | Msa0027250:intron | 50.0% | |
| CCGAGTTTGGATAAGGCGAA+TGG | - | chr1_1:51508874-51508893 | Msa0027250:intron | 50.0% | |
| GTTTATAGGCTGAGAAGGGG+TGG | - | chr1_1:51508916-51508935 | Msa0027250:intron | 50.0% | |
| GATCCACTGTGCCAATGTTG+TGG | - | chr1_1:51508950-51508969 | Msa0027250:intron | 50.0% | |
| GTTCCACAACATTGGCACAG+TGG | + | chr1_1:51508956-51508975 | None:intergenic | 50.0% | |
| ATGGGCCAACCCATTTAACC+CGG | + | chr1_1:51509037-51509056 | None:intergenic | 50.0% | |
| !! | AAATGGGTTGGCCCATAACC+CGG | - | chr1_1:51509041-51509060 | Msa0027250:intron | 50.0% |
| GTGGTGAAAGATCCAAGTCC+GGG | + | chr1_1:51509062-51509081 | None:intergenic | 50.0% | |
| GGTGGTGAAAGATCCAAGTC+CGG | + | chr1_1:51509063-51509082 | None:intergenic | 50.0% | |
| !! | AGTTGGAAGCATCCAAAGGG+AGG | + | chr1_1:51509324-51509343 | None:intergenic | 50.0% |
| CTAATGCTCCCTGGATTGAG+AGG | + | chr1_1:51509845-51509864 | None:intergenic | 50.0% | |
| TTCTTTGCATGCCTCATGGC+AGG | - | chr1_1:51509897-51509916 | Msa0027250:CDS | 50.0% | |
| TCTTTGCATGCCTCATGGCA+GGG | - | chr1_1:51509898-51509917 | Msa0027250:CDS | 50.0% | |
| GACAAGGTGGTGTGAGGAAG+AGG | + | chr1_1:51507177-51507196 | None:intergenic | 55.0% | |
| TCGGAGGAATGACGACAAGG+TGG | + | chr1_1:51507190-51507209 | None:intergenic | 55.0% | |
| TTGCGGAAAGTGGTTGTCGG+AGG | + | chr1_1:51507206-51507225 | None:intergenic | 55.0% | |
| CGGTTGCGGAAAGTGGTTGT+CGG | + | chr1_1:51507209-51507228 | None:intergenic | 55.0% | |
| CGACAACCACTTTCCGCAAC+CGG | - | chr1_1:51507207-51507226 | Msa0027250:CDS | 55.0% | |
| AGTCAGGCGAGAACGGATGA+GGG | + | chr1_1:51507249-51507268 | None:intergenic | 55.0% | |
| TAGTCAGGCGAGAACGGATG+AGG | + | chr1_1:51507250-51507269 | None:intergenic | 55.0% | |
| GGGACATAGTCAGGCGAGAA+CGG | + | chr1_1:51507256-51507275 | None:intergenic | 55.0% | |
| AGACATCATGAGCTGCCACG+TGG | + | chr1_1:51507390-51507409 | None:intergenic | 55.0% | |
| TCGGAATTTGGAAGCGGGTC+TGG | + | chr1_1:51507447-51507466 | None:intergenic | 55.0% | |
| ACGTAGAGGTGGAGACCACT+CGG | + | chr1_1:51507485-51507504 | None:intergenic | 55.0% | |
| AGTGGTCTCCACCTCTACGT+TGG | - | chr1_1:51507485-51507504 | Msa0027250:CDS | 55.0% | |
| ! | CACGGACTATGAGAGTACGG+TGG | + | chr1_1:51507529-51507548 | None:intergenic | 55.0% |
| AGTCCGTGCACTCAAAGGCT+TGG | - | chr1_1:51507541-51507560 | Msa0027250:CDS | 55.0% | |
| ! | AGATTCCGTACCGGTGTCAG+TGG | - | chr1_1:51507565-51507584 | Msa0027250:CDS | 55.0% |
| ! | AACGAGTTGGCGATACGGGT+CGG | - | chr1_1:51507621-51507640 | Msa0027250:CDS | 55.0% |
| AAGACACACCACCAACTCGC+GGG | - | chr1_1:51507779-51507798 | Msa0027250:intron | 55.0% | |
| CTGAGAAGGGGTGGGTATGA+TGG | - | chr1_1:51508925-51508944 | Msa0027250:intron | 55.0% | |
| GATAGGGATTCCCTGCCATG+AGG | + | chr1_1:51509911-51509930 | None:intergenic | 55.0% | |
| GAGTCTCCGGTTGCGGAAAG+TGG | + | chr1_1:51507216-51507235 | None:intergenic | 60.0% | |
| TTCCGCAACCGGAGACTCAC+CGG | - | chr1_1:51507218-51507237 | Msa0027250:CDS | 60.0% | |
| TTCCGGTGAGTCTCCGGTTG+CGG | + | chr1_1:51507223-51507242 | None:intergenic | 60.0% | |
| GGGAACTTCCGGTGAGTCTC+CGG | + | chr1_1:51507229-51507248 | None:intergenic | 60.0% | |
| GACGAGAAGACCCGGTGGAA+GGG | + | chr1_1:51507342-51507361 | None:intergenic | 60.0% | |
| TGACGAGAAGACCCGGTGGA+AGG | + | chr1_1:51507343-51507362 | None:intergenic | 60.0% | |
| ! | ACGGTGGTGACGAGAAGACC+CGG | + | chr1_1:51507350-51507369 | None:intergenic | 60.0% |
| ! | GTCTGGAATATCCGCCGGTG+GGG | + | chr1_1:51507430-51507449 | None:intergenic | 60.0% |
| ! | GGTCTGGAATATCCGCCGGT+GGG | + | chr1_1:51507431-51507450 | None:intergenic | 60.0% |
| ! | AGCGGGTCTGGAATATCCGC+CGG | + | chr1_1:51507435-51507454 | None:intergenic | 60.0% |
| TAGAGGTGGAGACCACTCGG+CGG | + | chr1_1:51507482-51507501 | None:intergenic | 60.0% | |
| ATGGCAGGCCAACGTAGAGG+TGG | + | chr1_1:51507496-51507515 | None:intergenic | 60.0% | |
| ! | ATGAGAGTACGGTGGGCCCA+CGG | + | chr1_1:51507521-51507540 | None:intergenic | 60.0% |
| CGATGCCACTGACACCGGTA+CGG | + | chr1_1:51507573-51507592 | None:intergenic | 60.0% | |
| !! | CCTGTTTTCCCGCGAGTTGG+TGG | + | chr1_1:51507790-51507809 | None:intergenic | 60.0% |
| CCACCAACTCGCGGGAAAAC+AGG | - | chr1_1:51507787-51507806 | Msa0027250:intron | 60.0% | |
| ACTAATTGCCCGACCCGCAG+GGG | + | chr1_1:51508854-51508873 | None:intergenic | 60.0% | |
| GACTAATTGCCCGACCCGCA+GGG | + | chr1_1:51508855-51508874 | None:intergenic | 60.0% | |
| GTTGGCCCATAACCCGGACT+TGG | - | chr1_1:51509047-51509066 | Msa0027250:intron | 60.0% | |
| GAAGACCCGGTGGAAGGGAC+CGG | + | chr1_1:51507337-51507356 | None:intergenic | 65.0% | |
| ! | GTGGTGACGAGAAGACCCGG+TGG | + | chr1_1:51507347-51507366 | None:intergenic | 65.0% |
| ACGTGGAGTTCCAGGCGGTG+CGG | + | chr1_1:51507373-51507392 | None:intergenic | 65.0% | |
| CTGCCACGTGGAGTTCCAGG+CGG | + | chr1_1:51507378-51507397 | None:intergenic | 65.0% | |
| GAGCTGCCACGTGGAGTTCC+AGG | + | chr1_1:51507381-51507400 | None:intergenic | 65.0% | |
| GGAATATCCGCCGGTGGGGT+CGG | + | chr1_1:51507426-51507445 | None:intergenic | 65.0% | |
| ! | GGGTCTGGAATATCCGCCGG+TGG | + | chr1_1:51507432-51507451 | None:intergenic | 65.0% |
| TCGGCGGTGGACCGGAGAAT+CGG | + | chr1_1:51507466-51507485 | None:intergenic | 65.0% | |
| GGCATGGCAGGCCAACGTAG+AGG | + | chr1_1:51507499-51507518 | None:intergenic | 65.0% | |
| ! | TGAGAGTACGGTGGGCCCAC+GGG | + | chr1_1:51507520-51507539 | None:intergenic | 65.0% |
| ! | ACCGGTGTCAGTGGCATCGC+CGG | - | chr1_1:51507574-51507593 | Msa0027250:CDS | 65.0% |
| GTCAGTGGCATCGCCGGGAA+TGG | - | chr1_1:51507580-51507599 | Msa0027250:CDS | 65.0% | |
| GTGGCATCGCCGGGAATGGA+CGG | - | chr1_1:51507584-51507603 | Msa0027250:CDS | 65.0% | |
| TGGCATCGCCGGGAATGGAC+GGG | - | chr1_1:51507585-51507604 | Msa0027250:CDS | 65.0% | |
| TCCCACGACCCGTCCATTCC+CGG | + | chr1_1:51507596-51507615 | None:intergenic | 65.0% | |
| AGTTGGCGATACGGGTCGGC+AGG | - | chr1_1:51507625-51507644 | Msa0027250:CDS | 65.0% | |
| GTTGGCGATACGGGTCGGCA+GGG | - | chr1_1:51507626-51507645 | Msa0027250:CDS | 65.0% | |
| TTGGCGATACGGGTCGGCAG+GGG | - | chr1_1:51507627-51507646 | Msa0027250:CDS | 65.0% | |
| CCTACATGCATCCGCCCCTG+CGG | - | chr1_1:51508837-51508856 | Msa0027250:intron | 65.0% | |
| CTACATGCATCCGCCCCTGC+GGG | - | chr1_1:51508838-51508857 | Msa0027250:intron | 65.0% | |
| GGACTAATTGCCCGACCCGC+AGG | + | chr1_1:51508856-51508875 | None:intergenic | 65.0% | |
| GGAGTTCCAGGCGGTGCGGA+CGG | + | chr1_1:51507369-51507388 | None:intergenic | 70.0% | |
| GCACCGCCTGGAACTCCACG+TGG | - | chr1_1:51507372-51507391 | Msa0027250:intron | 70.0% | |
| TATCCGCCGGTGGGGTCGGA+GGG | + | chr1_1:51507422-51507441 | None:intergenic | 70.0% | |
| ATATCCGCCGGTGGGGTCGG+AGG | + | chr1_1:51507423-51507442 | None:intergenic | 70.0% | |
| TTCTCCGGTCCACCGCCGAG+TGG | - | chr1_1:51507467-51507486 | Msa0027250:CDS | 70.0% | |
| GAGACCACTCGGCGGTGGAC+CGG | + | chr1_1:51507474-51507493 | None:intergenic | 70.0% | |
| AGGTGGAGACCACTCGGCGG+TGG | + | chr1_1:51507479-51507498 | None:intergenic | 70.0% | |
| ! | ACGTTGGCCTGCCATGCCCG+TGG | - | chr1_1:51507501-51507520 | Msa0027250:CDS | 70.0% |
| ! | CGTTGGCCTGCCATGCCCGT+GGG | - | chr1_1:51507502-51507521 | Msa0027250:CDS | 70.0% |
| CCCGGCGATGCCACTGACAC+CGG | + | chr1_1:51507578-51507597 | None:intergenic | 70.0% | |
| ! | CCGGTGTCAGTGGCATCGCC+GGG | - | chr1_1:51507575-51507594 | Msa0027250:CDS | 70.0% |
| GCCGGGAATGGACGGGTCGT+GGG | - | chr1_1:51507592-51507611 | Msa0027250:CDS | 70.0% | |
| CCGCAGGGGCGGATGCATGT+AGG | + | chr1_1:51508840-51508859 | None:intergenic | 70.0% | |
| ATGCATCCGCCCCTGCGGGT+CGG | - | chr1_1:51508842-51508861 | Msa0027250:intron | 70.0% | |
| AATTGCCCGACCCGCAGGGG+CGG | + | chr1_1:51508851-51508870 | None:intergenic | 70.0% | |
| CTGGGGCCGGTCCCTTCCAC+CGG | - | chr1_1:51507328-51507347 | Msa0027250:intron | 75.0% | |
| TGGGGCCGGTCCCTTCCACC+GGG | - | chr1_1:51507329-51507348 | Msa0027250:intron | 75.0% | |
| TCACCACCGTCCGCACCGCC+TGG | - | chr1_1:51507360-51507379 | Msa0027250:intron | 75.0% | |
| GTTCCAGGCGGTGCGGACGG+TGG | + | chr1_1:51507366-51507385 | None:intergenic | 75.0% | |
| CTCGCTCCCTCCGACCCCAC+CGG | - | chr1_1:51507413-51507432 | Msa0027250:intron | 75.0% | |
| GTACGGTGGGCCCACGGGCA+TGG | + | chr1_1:51507515-51507534 | None:intergenic | 75.0% | |
| CGCCGGGAATGGACGGGTCG+TGG | - | chr1_1:51507591-51507610 | Msa0027250:CDS | 75.0% | |
| GCGATACGGGTCGGCAGGGG+CGG | - | chr1_1:51507630-51507649 | Msa0027250:CDS | 75.0% | |
| TGCATCCGCCCCTGCGGGTC+GGG | - | chr1_1:51508843-51508862 | Msa0027250:intron | 75.0% | |
| ! | GCTCCCTCCGACCCCACCGG+CGG | - | chr1_1:51507416-51507435 | Msa0027250:intron | 80.0% |
| ! | GGTGGGCCCACGGGCATGGC+AGG | + | chr1_1:51507511-51507530 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 51507152 | 51509961 | 51507152 | ID=Msa0027250;Name=Msa0027250 |
| chr1_1 | mRNA | 51507152 | 51509961 | 51507152 | ID=Msa0027250-mRNA-1;Parent=Msa0027250;Name=Msa0027250-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|4|0|352 |
| chr1_1 | exon | 51509536 | 51509961 | 51509536 | ID=Msa0027250-mRNA-1:exon:15117;Parent=Msa0027250-mRNA-1 |
| chr1_1 | exon | 51508004 | 51508200 | 51508004 | ID=Msa0027250-mRNA-1:exon:15116;Parent=Msa0027250-mRNA-1 |
| chr1_1 | exon | 51507430 | 51507679 | 51507430 | ID=Msa0027250-mRNA-1:exon:15115;Parent=Msa0027250-mRNA-1 |
| chr1_1 | exon | 51507152 | 51507337 | 51507152 | ID=Msa0027250-mRNA-1:exon:15114;Parent=Msa0027250-mRNA-1 |
| chr1_1 | CDS | 51509536 | 51509961 | 51509536 | ID=Msa0027250-mRNA-1:cds;Parent=Msa0027250-mRNA-1 |
| chr1_1 | CDS | 51508004 | 51508200 | 51508004 | ID=Msa0027250-mRNA-1:cds;Parent=Msa0027250-mRNA-1 |
| chr1_1 | CDS | 51507430 | 51507679 | 51507430 | ID=Msa0027250-mRNA-1:cds;Parent=Msa0027250-mRNA-1 |
| chr1_1 | CDS | 51507152 | 51507337 | 51507152 | ID=Msa0027250-mRNA-1:cds;Parent=Msa0027250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
