AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1188600

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1188600 MtrunA17_Chr8g0356241 97.481 516 7 2 1 514 1 512 0.0 1035
Msa1188600 MtrunA17_Chr5g0438891 35.897 351 160 11 142 478 36 335 1.65e-54 189
Msa1188600 MtrunA17_Chr5g0438891 42.169 83 40 2 143 225 263 337 8.78e-11 63.9
Msa1188600 MtrunA17_Chr7g0249221 32.061 393 190 13 115 478 6 350 1.81e-47 170
Msa1188600 MtrunA17_Chr7g0249221 33.163 196 86 3 289 484 3 153 3.25e-27 113
Msa1188600 MtrunA17_Chr7g0249221 49.367 79 35 2 194 267 275 353 6.49e-18 85.9
Msa1188600 MtrunA17_Chr7g0249221 42.000 100 47 4 141 237 274 365 1.68e-13 72.4
Msa1188600 MtrunA17_Chr3g0116431 31.421 401 168 13 169 498 138 502 2.05e-47 172
Msa1188600 MtrunA17_Chr3g0116431 34.010 197 84 6 314 510 172 322 9.97e-25 107
Msa1188600 MtrunA17_Chr4g0058011 32.456 342 135 11 194 478 231 533 5.75e-45 166
Msa1188600 MtrunA17_Chr4g0058011 35.088 171 68 4 313 483 231 358 6.33e-25 108
Msa1188600 MtrunA17_Chr4g0058011 36.170 141 72 3 142 273 231 362 1.10e-21 98.6
Msa1188600 MtrunA17_Chr4g0058011 48.780 82 37 1 189 265 453 534 2.03e-18 88.6
Msa1188600 MtrunA17_Chr1g0195891 31.045 335 194 9 135 457 39 348 1.25e-41 152
Msa1188600 MtrunA17_Chr1g0195891 34.132 167 65 3 314 480 47 168 7.04e-22 97.1
Msa1188600 MtrunA17_Chr1g0195891 45.000 80 39 1 399 478 46 120 5.02e-15 76.6
Msa1188600 MtrunA17_Chr2g0286151 29.275 345 178 11 142 429 44 379 5.54e-30 122
Msa1188600 MtrunA17_Chr2g0286151 38.012 171 63 4 314 484 45 172 4.45e-27 114
Msa1188600 MtrunA17_Chr2g0286151 42.500 80 42 1 399 478 44 119 8.85e-19 89.0
Msa1188600 MtrunA17_Chr2g0286151 40.000 80 44 1 399 478 303 378 6.97e-11 64.7
Msa1188600 MtrunA17_Chr4g0066941 37.821 156 61 4 192 343 41 164 1.36e-26 113
Msa1188600 MtrunA17_Chr4g0066941 36.723 177 65 4 314 489 44 174 3.91e-25 108
Msa1188600 MtrunA17_Chr4g0066941 39.259 135 70 3 142 271 43 170 5.25e-25 108
Msa1188600 MtrunA17_Chr4g0066941 49.367 79 34 1 400 478 333 405 4.76e-18 87.0
Msa1188600 MtrunA17_Chr4g0066941 41.250 80 42 1 399 478 43 117 6.66e-17 83.6
Msa1188600 MtrunA17_Chr4g0066941 46.053 76 38 1 192 264 330 405 2.41e-15 78.6
Msa1188600 MtrunA17_Chr4g0066941 42.683 82 39 3 143 224 333 406 2.68e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1188600 AT3G12680.1 52.437 513 194 13 14 501 37 524 5.48e-177 508
Msa1188600 AT5G16540.3 35.987 314 137 7 193 478 17 294 7.44e-60 201
Msa1188600 AT5G16540.3 33.436 326 131 8 142 429 18 295 3.05e-44 160
Msa1188600 AT5G16540.3 30.890 191 87 4 314 504 19 164 1.80e-25 107
Msa1188600 AT5G16540.3 44.828 87 42 2 392 478 12 92 3.18e-17 83.6
Msa1188600 AT5G16540.3 44.706 85 37 2 141 223 218 294 2.47e-14 75.1
Msa1188600 AT5G16540.1 35.987 314 137 7 193 478 38 315 7.71e-60 202
Msa1188600 AT5G16540.1 33.436 326 131 8 142 429 39 316 3.51e-44 160
Msa1188600 AT5G16540.1 30.890 191 87 4 314 504 40 185 1.60e-25 108
Msa1188600 AT5G16540.1 33.088 136 67 3 343 478 2 113 2.51e-17 84.3
Msa1188600 AT5G16540.1 44.706 85 37 2 141 223 239 315 2.47e-14 75.1
Msa1188600 AT2G47850.1 33.983 359 130 10 191 478 39 361 2.97e-57 197
Msa1188600 AT2G47850.1 38.636 176 61 3 306 480 35 164 5.54e-28 117
Msa1188600 AT2G47850.1 44.330 97 49 2 382 478 25 116 1.01e-20 95.5
Msa1188600 AT2G47850.1 51.220 82 35 2 188 264 280 361 3.92e-18 87.4
Msa1188600 AT2G47850.3 33.983 359 130 10 191 478 39 361 2.97e-57 197
Msa1188600 AT2G47850.3 38.636 176 61 3 306 480 35 164 5.54e-28 117
Msa1188600 AT2G47850.3 44.330 97 49 2 382 478 25 116 1.01e-20 95.5
Msa1188600 AT2G47850.3 51.220 82 35 2 188 264 280 361 3.92e-18 87.4
Msa1188600 AT5G16540.2 34.713 314 134 8 193 478 38 308 1.00e-54 188
Msa1188600 AT5G16540.2 32.209 326 128 8 142 429 39 309 3.98e-40 149
Msa1188600 AT5G16540.2 32.402 179 76 4 314 492 40 173 1.53e-25 108
Msa1188600 AT5G16540.2 33.088 136 67 3 343 478 2 113 2.21e-17 84.3
Msa1188600 AT3G02830.2 33.799 358 135 11 187 478 5 326 2.24e-54 187
Msa1188600 AT3G02830.2 32.821 195 86 3 300 494 4 153 3.29e-28 116
Msa1188600 AT3G02830.2 30.612 343 160 12 142 455 62 355 1.23e-27 114
Msa1188600 AT3G02830.2 41.667 132 54 5 189 297 245 376 3.89e-19 89.7
Msa1188600 AT3G02830.2 44.706 85 37 2 141 223 250 326 4.08e-14 74.3
Msa1188600 AT3G02830.1 33.245 379 201 11 110 478 10 346 3.20e-51 180
Msa1188600 AT3G02830.1 32.500 200 90 3 295 494 19 173 1.93e-28 117
Msa1188600 AT3G02830.1 41.667 132 54 5 189 297 265 396 4.34e-19 89.7
Msa1188600 AT5G16540.4 34.722 288 124 7 193 452 17 268 1.06e-48 169
Msa1188600 AT5G16540.4 35.458 251 116 6 142 354 18 260 2.23e-37 139
Msa1188600 AT5G16540.4 30.890 191 87 4 314 504 19 164 8.21e-26 107
Msa1188600 AT5G16540.4 44.828 87 42 2 392 478 12 92 2.03e-17 82.8
Msa1188600 AT2G47850.2 34.603 315 161 9 191 478 39 335 1.27e-47 171
Msa1188600 AT2G47850.2 44.330 97 49 2 382 478 25 116 5.99e-21 95.9
Msa1188600 AT2G47850.2 51.220 82 35 2 188 264 254 335 2.58e-18 87.8
Msa1188600 AT2G47850.2 41.509 106 47 4 142 242 260 355 8.13e-14 73.9
Msa1188600 AT3G48440.1 33.623 345 188 10 141 477 106 417 1.82e-45 166
Msa1188600 AT3G48440.1 37.126 167 63 3 314 480 108 232 1.67e-26 112
Msa1188600 AT5G18550.3 31.579 361 184 16 142 477 16 338 9.33e-44 160
Msa1188600 AT5G18550.3 28.152 341 166 10 192 498 14 309 7.62e-36 139
Msa1188600 AT5G18550.1 31.579 361 184 16 142 477 48 370 1.12e-43 161
Msa1188600 AT5G18550.1 28.152 341 166 10 192 498 46 341 7.31e-36 139
Msa1188600 AT5G18550.4 31.302 361 185 15 142 477 48 370 1.51e-43 160
Msa1188600 AT5G18550.4 28.152 341 166 10 192 498 46 341 9.08e-36 139
Msa1188600 AT2G32930.3 32.845 341 179 8 142 477 14 309 2.57e-42 156
Msa1188600 AT2G32930.3 32.343 303 149 12 187 478 7 264 5.24e-31 125
Msa1188600 AT2G32930.3 37.126 167 58 4 314 480 15 134 3.66e-28 117
Msa1188600 AT2G32930.2 32.845 341 179 8 142 477 41 336 3.79e-42 157
Msa1188600 AT2G32930.2 32.343 303 149 12 187 478 34 291 5.64e-31 125
Msa1188600 AT2G32930.2 35.000 200 83 4 281 480 9 161 8.03e-29 119
Msa1188600 AT1G04990.1 32.012 328 140 9 195 478 45 333 2.69e-41 153
Msa1188600 AT1G04990.1 46.043 139 57 5 134 265 35 162 4.89e-31 124
Msa1188600 AT1G04990.1 37.725 167 56 3 314 480 45 163 7.08e-28 115
Msa1188600 AT1G04990.1 39.241 79 42 1 148 226 264 336 3.56e-11 65.5
Msa1188600 AT1G04990.6 32.012 328 140 9 195 478 45 333 2.69e-41 153
Msa1188600 AT1G04990.6 46.043 139 57 5 134 265 35 162 4.89e-31 124
Msa1188600 AT1G04990.6 37.725 167 56 3 314 480 45 163 7.08e-28 115
Msa1188600 AT1G04990.6 39.241 79 42 1 148 226 264 336 3.56e-11 65.5
Msa1188600 AT1G04990.2 32.012 328 140 9 195 478 45 333 2.69e-41 153
Msa1188600 AT1G04990.2 46.043 139 57 5 134 265 35 162 4.89e-31 124
Msa1188600 AT1G04990.2 37.725 167 56 3 314 480 45 163 7.08e-28 115
Msa1188600 AT1G04990.2 39.241 79 42 1 148 226 264 336 3.56e-11 65.5
Msa1188600 AT5G63260.1 29.025 441 243 14 61 480 17 408 1.15e-40 152
Msa1188600 AT5G63260.1 40.594 101 53 3 192 287 329 427 3.67e-14 75.1
Msa1188600 AT5G63260.2 29.047 451 246 15 61 480 17 424 5.39e-40 150
Msa1188600 AT5G63260.2 40.594 101 53 3 192 287 345 443 4.02e-14 75.1
Msa1188600 AT5G18550.2 30.471 361 175 16 142 477 48 357 1.82e-39 149
Msa1188600 AT5G18550.2 28.955 335 159 10 192 492 46 335 8.43e-37 142
Msa1188600 AT1G04990.5 30.488 328 125 9 195 478 45 313 2.84e-38 144
Msa1188600 AT1G04990.5 46.043 139 57 5 134 265 35 162 2.81e-31 125
Msa1188600 AT1G04990.5 37.725 167 56 3 314 480 45 163 4.84e-28 115
Msa1188600 AT2G32930.1 31.965 341 178 9 142 477 41 332 8.67e-38 144
Msa1188600 AT2G32930.1 31.683 303 147 13 187 478 34 287 5.56e-27 114
Msa1188600 AT2G32930.1 34.500 200 80 5 281 480 9 157 4.57e-25 108
Msa1188600 AT3G06410.1 36.646 161 67 3 192 347 49 179 1.12e-30 124
Msa1188600 AT3G06410.1 39.416 137 66 3 142 269 51 179 1.89e-25 109
Msa1188600 AT3G06410.1 35.714 168 64 5 314 480 52 176 2.21e-23 103
Msa1188600 AT3G06410.1 38.525 122 65 3 356 477 267 378 7.85e-19 89.7
Msa1188600 AT3G06410.1 41.250 80 43 1 399 478 51 126 8.57e-18 86.3
Msa1188600 AT3G06410.1 42.308 78 40 2 191 263 301 378 4.84e-13 71.6
Msa1188600 AT3G06410.1 30.000 170 84 6 58 222 239 378 2.34e-12 69.7
Msa1188600 AT2G47850.4 32.510 243 90 8 306 478 1 239 6.36e-30 120
Msa1188600 AT2G47850.4 52.564 78 32 2 192 264 162 239 1.13e-18 87.8
Msa1188600 AT2G47850.4 41.509 106 47 4 142 242 164 259 3.56e-14 74.3
Msa1188600 AT1G04990.3 29.091 275 114 7 246 478 17 252 6.99e-26 108
Msa1188600 AT1G04990.3 47.368 76 35 1 405 480 12 82 2.58e-17 83.6
Msa1188600 AT1G04990.3 49.254 67 26 2 205 265 17 81 1.70e-13 72.0
Msa1188600 AT1G04990.3 39.241 79 42 1 148 226 183 255 1.50e-11 66.2
Msa1188600 AT1G04990.4 27.636 275 98 7 246 478 17 232 1.27e-22 98.6
Msa1188600 AT1G04990.4 47.368 76 35 1 405 480 12 82 2.37e-17 83.2
Msa1188600 AT1G04990.4 49.254 67 26 2 205 265 17 81 1.52e-13 72.0
Msa1188600 AT1G48195.1 44.304 79 40 1 399 477 6 80 4.57e-17 76.6
Msa1188600 AT1G48195.1 42.308 78 40 2 191 263 3 80 1.62e-12 63.5

Find 179 sgRNAs with CRISPR-Local

Find 429 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGAAAATGCCGATGTTTC+TGG 0.134629 8_1:-28938592 Msa1188600:CDS
AAATCTGGCATATGTAAATT+TGG 0.142400 8_1:-28936771 Msa1188600:CDS
GATTGGTATCAGTGCTTATT+TGG 0.173459 8_1:-28935979 Msa1188600:three_prime_UTR
GCAAGTTCGATCATCCTATT+TGG 0.183299 8_1:-28940206 Msa1188600:CDS
GTTTCACTTGGAACAATATT+TGG 0.192357 8_1:+28938809 None:intergenic
GGCGACGGCGGCAGCGGCGG+AGG 0.196569 8_1:+28942137 None:intergenic
CTAACAAGAACCTGTAAATT+TGG 0.229682 8_1:-28940237 Msa1188600:CDS
TTGCCCAATTGTACTCAAAA+TGG 0.244916 8_1:+28940374 None:intergenic
CAGTCTCAGGTGGGAGTAAC+AGG 0.258392 8_1:-28937236 Msa1188600:CDS
GTACTTCCGGTTTCATATCT+AGG 0.258578 8_1:+28940312 None:intergenic
GCAGCTCTCTCCAAATTTAC+AGG 0.264926 8_1:+28940227 None:intergenic
TGCATTGGGCCCTTCTGTTT+TGG 0.269913 8_1:-28937674 Msa1188600:CDS
TTGTATTCGGGTCGTAATAT+TGG 0.270832 8_1:+28942298 None:intergenic
AAAACTGCAACGTGCAAGTT+TGG 0.272112 8_1:-28936261 Msa1188600:CDS
AACAAACATACCTCTCTTCT+TGG 0.273988 8_1:+28936660 None:intergenic
GGAAGCAGCGGCGGCGGCTT+CGG 0.278346 8_1:+28942248 None:intergenic
CCTGGCCTCTGAGGATAAAT+AGG 0.293250 8_1:+28940285 None:intergenic
AATCTGGCATATGTAAATTT+GGG 0.314408 8_1:-28936770 Msa1188600:CDS
TGCAGACACAGGTGGATTAA+TGG 0.315809 8_1:+28937693 None:intergenic
ATGTAGTTCTACTTGAAAAC+TGG 0.326854 8_1:-28938296 Msa1188600:intron
AGCAGCGGCGACGGCGGCAG+CGG 0.330670 8_1:+28942131 None:intergenic
CCACCCGCAGGAACCCAAAT+AGG 0.335891 8_1:+28940192 None:intergenic
AGCGGCGACGGCGGCAGCGG+CGG 0.341849 8_1:+28942134 None:intergenic
ACAAATTCTTCTGTGTTTGA+TGG 0.349596 8_1:-28938176 Msa1188600:CDS
TGTATTCGGGTCGTAATATT+GGG 0.368508 8_1:+28942299 None:intergenic
TCTGTGTTTGATGGGGCAAT+AGG 0.371334 8_1:-28938167 Msa1188600:CDS
CAAGTTCGATCATCCTATTT+GGG 0.377080 8_1:-28940205 Msa1188600:CDS
TGAGCAAGGAACATTGTATT+CGG 0.378964 8_1:+28942285 None:intergenic
TGTCCATTCTACATGAAAAC+TGG 0.383033 8_1:-28937946 Msa1188600:CDS
ATGCAGTTCTATATGAAATC+TGG 0.398754 8_1:-28936786 Msa1188600:intron
CAAATTCTTCTGTGTTTGAT+GGG 0.399035 8_1:-28938175 Msa1188600:CDS
AATCCACCTGTGTCTGCATT+GGG 0.400528 8_1:-28937688 Msa1188600:CDS
TTTACTGGCAAATTTCTCTC+TGG 0.401224 8_1:-28936001 Msa1188600:three_prime_UTR
AATGTTAAACTTACTGCTGC+AGG 0.401933 8_1:-28936687 Msa1188600:CDS
AGGTTCTTGTTAGCATATAG+TGG 0.401971 8_1:+28940247 None:intergenic
AATCATCAGATAATTGAATC+TGG 0.404625 8_1:+28938225 None:intergenic
TAATCCACCTGTGTCTGCAT+TGG 0.404899 8_1:-28937689 Msa1188600:CDS
GCGACGGCGGCAGCGGCGGA+GGG 0.408489 8_1:+28942138 None:intergenic
ATAAATAGGCAAAGTACTTC+CGG 0.408705 8_1:+28940299 None:intergenic
GCCAGTAAAGAAAGTAAAAC+AGG 0.408848 8_1:+28936015 None:intergenic
AATTGAATCTGGATATCCTT+GGG 0.412002 8_1:+28938236 None:intergenic
AGCCATCTCCATCACTTCTC+CGG 0.413222 8_1:+28936209 None:intergenic
GGTCTCCGTTTCTCCTCCAT+TGG 0.417479 8_1:+28936164 None:intergenic
ATAGTCACCTCTTTCCAATC+TGG 0.419919 8_1:+28940165 None:intergenic
GTGTCAATCTCATGTTGAAT+TGG 0.422955 8_1:+28942444 None:intergenic
AGTGATGTTGTGCGGTCGAT+TGG 0.423384 8_1:+28936726 None:intergenic
ATCTGGTTCTCCAGGTCTCT+CGG 0.423563 8_1:+28938781 None:intergenic
TTTGTGTCTGCTCAACATTA+CGG 0.425536 8_1:+28938198 None:intergenic
AGGATGATTGTAGCGGCAAC+TGG 0.426982 8_1:+28937803 None:intergenic
TCGGGTCGTAATATTGGGTC+GGG 0.433275 8_1:+28942304 None:intergenic
TGGGTCGGGGATGTTGTTGA+TGG 0.438909 8_1:+28942318 None:intergenic
AGCAGCGGCGGCGGCTTCGG+CGG 0.439320 8_1:+28942251 None:intergenic
GCATGATCTCAATATTGTTC+CGG 0.445718 8_1:+28936117 None:intergenic
CGACGGCGGCAGCGGCGGAG+GGG 0.446303 8_1:+28942139 None:intergenic
TGGCAAATTTCTCTCTGGAT+TGG 0.446703 8_1:-28935996 Msa1188600:three_prime_UTR
TAGTTGACCATAACTTTCAT+AGG 0.446953 8_1:+28935948 None:intergenic
GATTTCGACATTGCTCCTCC+TGG 0.447120 8_1:-28942207 Msa1188600:CDS
GAATCTCCACCACTAATCCT+TGG 0.448603 8_1:-28942173 Msa1188600:CDS
ATATAAATCAGTTGCAAGTT+CGG 0.454222 8_1:-28937828 Msa1188600:intron
GTTCTACTCACTGGACAATC+TGG 0.456349 8_1:+28938764 None:intergenic
TCCATCACTTCTCCGGGTGG+TGG 0.461867 8_1:+28936216 None:intergenic
CTCTCGGGAAGAGTTTCACT+TGG 0.463041 8_1:+28938797 None:intergenic
TCCTCTTACAACATCCCAAC+CGG 0.466266 8_1:-28942348 Msa1188600:CDS
AGGAGGAGCAATGTCGAAAT+CGG 0.468141 8_1:+28942209 None:intergenic
TACCATTGGATTTGACAGAC+TGG 0.473228 8_1:+28937582 None:intergenic
CATCCTATTTGGGTTCCTGC+GGG 0.475897 8_1:-28940195 Msa1188600:CDS
CGGCGGCGGCTTCGGCGGTG+CGG 0.478211 8_1:+28942256 None:intergenic
TAATTGAATCTGGATATCCT+TGG 0.480053 8_1:+28938235 None:intergenic
GATGGAGGAAGCAGCGGCGG+CGG 0.480282 8_1:+28942242 None:intergenic
GAGCAAGGAACATTGTATTC+GGG 0.482275 8_1:+28942286 None:intergenic
TAGTCACCTCTTTCCAATCT+GGG 0.484064 8_1:+28940166 None:intergenic
TCTGGTTCTCCAGGTCTCTC+GGG 0.484418 8_1:+28938782 None:intergenic
AAAACTGGAAAATGTAAATA+CGG 0.484664 8_1:-28938281 Msa1188600:CDS
TCCTCAGAGGCCAGGAGAGA+AGG 0.488900 8_1:-28940277 Msa1188600:CDS
TACTTCCGGTTTCATATCTA+GGG 0.492109 8_1:+28940313 None:intergenic
TGTTGTTGATGGAGCTGCTC+CGG 0.493176 8_1:+28942329 None:intergenic
TCTGGATATCCTTGGGGTGA+TGG 0.494056 8_1:+28938243 None:intergenic
TGGGCACAATCCTTCTCTCC+TGG 0.495065 8_1:+28940267 None:intergenic
AAATGAGAAAAGGATGGTAT+TGG 0.498703 8_1:+28942419 None:intergenic
ACATCACATTCAATCTGTCC+AGG 0.499616 8_1:+28937194 None:intergenic
TGTAAGAGGATGTGTAGATT+CGG 0.500428 8_1:+28942361 None:intergenic
CACTGTCGCATAATAGCAAA+GGG 0.501308 8_1:-28938112 Msa1188600:CDS
CTGCGGGTGGAATCCCAGAT+TGG 0.502089 8_1:-28940179 Msa1188600:CDS
ACTATCTATCCTCAGCGCCC+TGG 0.504341 8_1:-28937212 Msa1188600:CDS
CCTATTTATCCTCAGAGGCC+AGG 0.504717 8_1:-28940285 Msa1188600:CDS
AATCTCCACCACTAATCCTT+GGG 0.505009 8_1:-28942172 Msa1188600:CDS
CGTTGCAGCAGCGGCGACGG+CGG 0.505617 8_1:+28942125 None:intergenic
TTGATGGAGCTGCTCCGGTT+GGG 0.506701 8_1:+28942334 None:intergenic
AGCATTCGCCCAAGGATTAG+TGG 0.507557 8_1:+28942164 None:intergenic
AGATGTGCCTGGTTCTGCTC+CGG 0.508060 8_1:-28936136 Msa1188600:CDS
GCCATCTCCATCACTTCTCC+GGG 0.508482 8_1:+28936210 None:intergenic
TACAACCAATGGAGGAGAAA+CGG 0.511068 8_1:-28936169 Msa1188600:CDS
ATTCGTTGCAGCAGCGGCGA+CGG 0.512591 8_1:+28942122 None:intergenic
CAAAGGGCTTCCTGTGAGAC+CGG 0.513415 8_1:-28938096 Msa1188600:intron
AAAATTAATACCGGTCTCAC+AGG 0.514093 8_1:+28938086 None:intergenic
ACTGGACAATCTGGTTCTCC+AGG 0.515598 8_1:+28938773 None:intergenic
GTGATGTTGTGCGGTCGATT+GGG 0.517527 8_1:+28936727 None:intergenic
TCACTTCTCCGGGTGGTGGA+TGG 0.518278 8_1:+28936220 None:intergenic
GAAACTCTTCCCGAGAGACC+TGG 0.522394 8_1:-28938791 Msa1188600:CDS
TGGCTTACCTGAGAGGCCAC+AGG 0.523921 8_1:-28938572 Msa1188600:CDS
AAGATCAAGTGAAGCGGCAG+AGG 0.526225 8_1:+28942095 None:intergenic
GAGATTCTAGACGCAACTCC+AGG 0.526633 8_1:+28942189 None:intergenic
TTCGGGTCGTAATATTGGGT+CGG 0.526786 8_1:+28942303 None:intergenic
GTTGATGGAGCTGCTCCGGT+TGG 0.526797 8_1:+28942333 None:intergenic
ATCAATATCTAACCGCGCAA+GGG 0.527350 8_1:+28938545 None:intergenic
GATCAATATCTAACCGCGCA+AGG 0.527839 8_1:+28938544 None:intergenic
TACAATCATCCTGACATGAA+TGG 0.530255 8_1:-28937792 Msa1188600:intron
TGTCGAAATCGGAGGAGTAA+CGG 0.532690 8_1:+28942220 None:intergenic
CCTATTTGGGTTCCTGCGGG+TGG 0.532997 8_1:-28940192 Msa1188600:CDS
AAGCGCCCTAGATATGAAAC+CGG 0.536130 8_1:-28940318 Msa1188600:CDS
TCAGAGAAATGAGAAAAGGA+TGG 0.536567 8_1:+28942413 None:intergenic
GGTTTCATATCTAGGGCGCT+TGG 0.536573 8_1:+28940320 None:intergenic
ACCATTGGATTTGACAGACT+GGG 0.537056 8_1:+28937583 None:intergenic
CAATTGGGCAAAACGAAGCT+TGG 0.537177 8_1:-28940362 Msa1188600:CDS
TTGGTATACGTCGAACTCAC+TGG 0.538046 8_1:-28940343 Msa1188600:CDS
TATTGTTCCGGAGCAGAACC+AGG 0.544228 8_1:+28936129 None:intergenic
GATCTTAAACGCTCTTCTGA+TGG 0.548162 8_1:-28942078 Msa1188600:intron
TTGTGCGGTCGATTGGGTGA+TGG 0.553158 8_1:+28936733 None:intergenic
TCCACCACCCGGAGAAGTGA+TGG 0.555622 8_1:-28936217 Msa1188600:CDS
TTATACATACCATTCATGTC+AGG 0.559421 8_1:+28937783 None:intergenic
TCATCCTATTTGGGTTCCTG+CGG 0.562825 8_1:-28940196 Msa1188600:CDS
TGCGACAGTGGAGATATAAG+AGG 0.563819 8_1:+28938125 None:intergenic
GTTGAGGACGCCAAAACAGA+AGG 0.568271 8_1:+28937664 None:intergenic
TTGTACTCAAAATGGATGGA+TGG 0.570115 8_1:+28940382 None:intergenic
CAAGGAGCTTCTACAACCAA+TGG 0.571919 8_1:-28936180 Msa1188600:CDS
CCACTGTCGCATAATAGCAA+AGG 0.572283 8_1:-28938113 Msa1188600:CDS
TGAGAAAAGGATGGTATTGG+TGG 0.575776 8_1:+28942422 None:intergenic
GGTTCTTGTTAGCATATAGT+GGG 0.577333 8_1:+28940248 None:intergenic
AAATTCTTCTGTGTTTGATG+GGG 0.579820 8_1:-28938174 Msa1188600:CDS
GAGACCAACGAAGATGTGCC+TGG 0.580549 8_1:-28936147 Msa1188600:CDS
TCAACTGCTAATCTTAACAT+TGG 0.585935 8_1:-28937646 Msa1188600:CDS
CGGTGCGGCGATAGTGAGCA+AGG 0.586360 8_1:+28942271 None:intergenic
TAGTTGACCTATGAAAGTTA+TGG 0.586934 8_1:-28935955 Msa1188600:three_prime_UTR
GAGGGGAAAGCATTCGCCCA+AGG 0.587222 8_1:+28942156 None:intergenic
AGAACCAGGCACATCTTCGT+TGG 0.587281 8_1:+28936143 None:intergenic
TCAATATCTAACCGCGCAAG+GGG 0.589144 8_1:+28938546 None:intergenic
GGCGACATTCGTTGCAGCAG+CGG 0.592019 8_1:+28942116 None:intergenic
ATGTTTCTGGCTTACCTGAG+AGG 0.592119 8_1:-28938579 Msa1188600:CDS
ATGTTAAACTTACTGCTGCA+GGG 0.593446 8_1:-28936686 Msa1188600:CDS
AATGGATAGTTAGTTAGCCA+AGG 0.594443 8_1:-28942538 Msa1188600:five_prime_UTR
TCCGGTTGGGATGTTGTAAG+AGG 0.594805 8_1:+28942347 None:intergenic
ATCTGGCATATGTAAATTTG+GGG 0.597625 8_1:-28936769 Msa1188600:CDS
CTCAGGTAAGCCAGAAACAT+CGG 0.599049 8_1:+28938582 None:intergenic
TCCTTCTCTCCTGGCCTCTG+AGG 0.599748 8_1:+28940276 None:intergenic
CCCCAGTCTGTCAAATCCAA+TGG 0.601676 8_1:-28937584 Msa1188600:intron
ATCGGAGGAGTAACGGATGG+AGG 0.601756 8_1:+28942227 None:intergenic
CAATCTGGGATTCCACCCGC+AGG 0.605325 8_1:+28940180 None:intergenic
CTTTGCCTATTTATCCTCAG+AGG 0.609724 8_1:-28940290 Msa1188600:CDS
CATTCTACATGAAAACTGGA+AGG 0.612306 8_1:-28937942 Msa1188600:intron
AAATTTGACCATCCACCACC+CGG 0.612670 8_1:-28936228 Msa1188600:CDS
GCGTTTAAGATCAAGTGAAG+CGG 0.617066 8_1:+28942089 None:intergenic
ACGGATGGAGGAAGCAGCGG+CGG 0.619469 8_1:+28942239 None:intergenic
CCAATTGTACTCAAAATGGA+TGG 0.622960 8_1:+28940378 None:intergenic
ATCTCCATCACTTCTCCGGG+TGG 0.623307 8_1:+28936213 None:intergenic
GGGCCCAATGCAGACACAGG+TGG 0.623860 8_1:+28937685 None:intergenic
TGGAATCCCAGATTGGAAAG+AGG 0.624036 8_1:-28940172 Msa1188600:intron
GAAATCGGAGGAGTAACGGA+TGG 0.631902 8_1:+28942224 None:intergenic
TTGAGGACGCCAAAACAGAA+GGG 0.632080 8_1:+28937665 None:intergenic
GAAGGGCCCAATGCAGACAC+AGG 0.635952 8_1:+28937682 None:intergenic
AATGTTAAGATTAGCAGTTG+AGG 0.638653 8_1:+28937648 None:intergenic
ATGGAGATGGCTAAGTCACA+AGG 0.639872 8_1:-28936198 Msa1188600:CDS
ACCCGGAGAAGTGATGGAGA+TGG 0.642505 8_1:-28936211 Msa1188600:CDS
CATCACATTCAATCTGTCCA+GGG 0.642800 8_1:+28937195 None:intergenic
CCATTGGATTTGACAGACTG+GGG 0.644721 8_1:+28937584 None:intergenic
TCAATCTGTCCAGGGCGCTG+AGG 0.644841 8_1:+28937203 None:intergenic
CGGGTCGTAATATTGGGTCG+GGG 0.646912 8_1:+28942305 None:intergenic
AGGAGCAATGTCGAAATCGG+AGG 0.653515 8_1:+28942212 None:intergenic
AGTCTCAGGTGGGAGTAACA+GGG 0.654906 8_1:-28937235 Msa1188600:CDS
TGCAGGGTTACCAAGAAGAG+AGG 0.662159 8_1:-28936670 Msa1188600:intron
GTAACGGATGGAGGAAGCAG+CGG 0.662636 8_1:+28942236 None:intergenic
ATTGAATCTGGATATCCTTG+GGG 0.664522 8_1:+28938237 None:intergenic
GGAGCTTCTACAACCAATGG+AGG 0.668592 8_1:-28936177 Msa1188600:CDS
TCATGTCAGGATGATTGTAG+CGG 0.686151 8_1:+28937796 None:intergenic
ATGCAAATTCCATCACCCCA+AGG 0.686683 8_1:-28938252 Msa1188600:CDS
ACATGTAATGAAATAAAACA+AGG 0.692651 8_1:+28936061 None:intergenic
ATTCTAGACGCAACTCCAGG+AGG 0.695785 8_1:+28942192 None:intergenic
ATTCGCCCAAGGATTAGTGG+TGG 0.702300 8_1:+28942167 None:intergenic
CCTTTGCTATTATGCGACAG+TGG 0.707348 8_1:+28938113 None:intergenic
CAATATCTAACCGCGCAAGG+GGG 0.713052 8_1:+28938547 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATTTCAAAATATATAC+CGG + chr8_1:28937223-28937242 None:intergenic 10.0%
!! ATTTAAGAATTCAAATTTAT+AGG + chr8_1:28939595-28939614 None:intergenic 10.0%
!! TGAATTCTTAAATATATAAT+TGG - chr8_1:28939602-28939621 Msa1188600:intron 10.0%
!! TAATTAAATAGAAATGTAAA+AGG + chr8_1:28941672-28941691 None:intergenic 10.0%
!!! GATAATTATAGTTGTTTTTA+CGG - chr8_1:28935873-28935892 Msa1188600:three_prime_UTR 15.0%
!!! AAAAAAAAAAAAGCGTAAAA+TGG - chr8_1:28935928-28935947 Msa1188600:three_prime_UTR 15.0%
!! TAATTGTTGAATTAAATGAT+TGG - chr8_1:28936640-28936659 Msa1188600:intron 15.0%
!!! TCATTTTCTAAAATTATTAC+TGG + chr8_1:28936766-28936785 None:intergenic 15.0%
!! GTTATTTATATAACGAAAAT+AGG - chr8_1:28937116-28937135 Msa1188600:intron 15.0%
!!! GTAAAAGTATTATTAAATAG+TGG + chr8_1:28937559-28937578 None:intergenic 15.0%
!!! TTTTACTTAATAGCATTTTA+CGG - chr8_1:28937573-28937592 Msa1188600:intron 15.0%
!! AAGCATATATGAATATATAA+TGG - chr8_1:28938434-28938453 Msa1188600:intron 15.0%
!! ACTACAAATATACATATAAA+CGG + chr8_1:28938486-28938505 None:intergenic 15.0%
!!! TTGATTTCTGTTTAATTTTA+TGG - chr8_1:28940600-28940619 Msa1188600:intron 15.0%
!! TTAAAACAAATTAATGTTTC+AGG - chr8_1:28941032-28941051 Msa1188600:intron 15.0%
!! AAATTACAATAATCTAAGAA+TGG + chr8_1:28941159-28941178 None:intergenic 15.0%
!!! ACATAAAATCAATTTGTTAA+TGG + chr8_1:28941902-28941921 None:intergenic 15.0%
!! AATAAAAACAAACAAACCAA+TGG - chr8_1:28936096-28936115 Msa1188600:three_prime_UTR 20.0%
!! ATTAATTATTATGAGTGATG+TGG - chr8_1:28936496-28936515 Msa1188600:intron 20.0%
!!! TTAATTTGATGATTGATTGT+TGG - chr8_1:28936553-28936572 Msa1188600:intron 20.0%
!!! GGGAATTTTTTTTATTAAAG+TGG - chr8_1:28936722-28936741 Msa1188600:CDS 20.0%
!!! AGCTTAGTTAGAATTTTTAA+GGG - chr8_1:28936871-28936890 Msa1188600:intron 20.0%
!! TTAGCTTCTTCAAAAAAATT+AGG - chr8_1:28937019-28937038 Msa1188600:intron 20.0%
!! TTGATGAAGAAAAAGAAAAT+TGG - chr8_1:28937253-28937272 Msa1188600:intron 20.0%
!! TGATGAAGAAAAAGAAAATT+GGG - chr8_1:28937254-28937273 Msa1188600:intron 20.0%
!! TACAAAATTTAATGTGTGAT+AGG - chr8_1:28937681-28937700 Msa1188600:CDS 20.0%
!!! AAAAAAAAAACATCTAGAGT+TGG - chr8_1:28937746-28937765 Msa1188600:intron 20.0%
!! CAAAATAACATACATAAATC+TGG + chr8_1:28937869-28937888 None:intergenic 20.0%
!! CATTATTTATACATTTGCTT+TGG - chr8_1:28938037-28938056 Msa1188600:intron 20.0%
!!! ATAATAGAAGTGTATATACA+TGG + chr8_1:28938066-28938085 None:intergenic 20.0%
!! ATTGTATAGTACATTTACTA+TGG - chr8_1:28938376-28938395 Msa1188600:intron 20.0%
!! TTGTATAGTACATTTACTAT+GGG - chr8_1:28938377-28938396 Msa1188600:intron 20.0%
!!! TATATGAATATATAATGGAG+TGG - chr8_1:28938439-28938458 Msa1188600:intron 20.0%
!!! GTTCTAAGAATAGAAAATTT+GGG + chr8_1:28938958-28938977 None:intergenic 20.0%
!!! TGTTCTAAGAATAGAAAATT+TGG + chr8_1:28938959-28938978 None:intergenic 20.0%
!!! TTTTACTCACATCAATTTAT+GGG - chr8_1:28938983-28939002 Msa1188600:intron 20.0%
!! AAGGAAACAAAATATAGAAA+AGG + chr8_1:28939067-28939086 None:intergenic 20.0%
!! AAAATCTGAATATGTTATAC+TGG + chr8_1:28939153-28939172 None:intergenic 20.0%
!!! TTTATTGGTTGAAATTCATA+TGG - chr8_1:28939989-28940008 Msa1188600:intron 20.0%
!!! TTATTGGTTGAAATTCATAT+GGG - chr8_1:28939990-28940009 Msa1188600:intron 20.0%
!! CTTGAGACATTATTTATATA+TGG - chr8_1:28940145-28940164 Msa1188600:intron 20.0%
!! AAAACTGGAAAATGTAAATA+CGG - chr8_1:28940203-28940222 Msa1188600:CDS 20.0%
!!! TTTTTCATGATACAAATCTT+TGG - chr8_1:28940497-28940516 Msa1188600:intron 20.0%
!!! TTTCAGGTTCTTAAAATTTA+CGG - chr8_1:28941048-28941067 Msa1188600:intron 20.0%
!! TGAAGTATAATAATATCACT+GGG + chr8_1:28941336-28941355 None:intergenic 20.0%
!! ATGAAGTATAATAATATCAC+TGG + chr8_1:28941337-28941356 None:intergenic 20.0%
!!! CAAATATTTTTTAACCAGAT+CGG + chr8_1:28941550-28941569 None:intergenic 20.0%
!! GAATTTCTGATAAAAATTTG+AGG + chr8_1:28942103-28942122 None:intergenic 20.0%
!! ACATGTAATGAAATAAAACA+AGG + chr8_1:28942426-28942445 None:intergenic 20.0%
!! CATATTGATATCATTTTCCT+TGG + chr8_1:28935966-28935985 None:intergenic 25.0%
!!! TTTTTCAGAGAAATGAGAAA+AGG + chr8_1:28936078-28936097 None:intergenic 25.0%
!!! TTGTTTTTGTGTGTGATTTA+TGG - chr8_1:28936461-28936480 Msa1188600:intron 25.0%
!! ATAAGCATTCAATAATGGAA+AGG + chr8_1:28936684-28936703 None:intergenic 25.0%
! TAAGCATAAGCATTCAATAA+TGG + chr8_1:28936689-28936708 None:intergenic 25.0%
! AATGCTTATGCTTAAATGAT+TGG - chr8_1:28936695-28936714 Msa1188600:CDS 25.0%
! ATGCTTATGCTTAAATGATT+GGG - chr8_1:28936696-28936715 Msa1188600:CDS 25.0%
!!! TTTTTTTATTAAAGTGGCAC+TGG - chr8_1:28936728-28936747 Msa1188600:CDS 25.0%
!!! TTTTTTATTAAAGTGGCACT+GGG - chr8_1:28936729-28936748 Msa1188600:CDS 25.0%
! AAAATTATTACTGGTGTCTA+AGG + chr8_1:28936757-28936776 None:intergenic 25.0%
!! GAGCTTAGTTAGAATTTTTA+AGG - chr8_1:28936870-28936889 Msa1188600:intron 25.0%
!!! GTGTTATAAGTTTTATTGTG+AGG - chr8_1:28937059-28937078 Msa1188600:intron 25.0%
! TAGCTATTAGTGTATTGTTA+AGG + chr8_1:28937187-28937206 None:intergenic 25.0%
! TAACAATACACTAATAGCTA+CGG - chr8_1:28937187-28937206 Msa1188600:intron 25.0%
! GATGAAGAAAAAGAAAATTG+GGG - chr8_1:28937255-28937274 Msa1188600:intron 25.0%
! ATGAAGAAAAAGAAAATTGG+GGG - chr8_1:28937256-28937275 Msa1188600:intron 25.0%
!!! GATTTAAGTTTTAACTAGCT+TGG - chr8_1:28938728-28938747 Msa1188600:intron 25.0%
! AGAAACTGAATAATAATGAG+TGG - chr8_1:28938760-28938779 Msa1188600:intron 25.0%
!! GTTTTACTCACATCAATTTA+TGG - chr8_1:28938982-28939001 Msa1188600:intron 25.0%
! ATAGAAAAGGAAATAAGAGA+AGG + chr8_1:28939054-28939073 None:intergenic 25.0%
! TAAACAGATTTACAAAAGCA+AGG + chr8_1:28939257-28939276 None:intergenic 25.0%
!!! ACTAATGAAGCTGTTTTTTA+TGG - chr8_1:28939278-28939297 Msa1188600:intron 25.0%
!! CTATCAATTTTTGTTCTAGT+AGG - chr8_1:28939432-28939451 Msa1188600:intron 25.0%
! AGCTGATTATATGAATTAAC+AGG + chr8_1:28939527-28939546 None:intergenic 25.0%
!! TAAATATGTTACCTCTGTTT+TGG - chr8_1:28939546-28939565 Msa1188600:intron 25.0%
! TATTCATGCAAAAGATAAAG+AGG + chr8_1:28940125-28940144 None:intergenic 25.0%
! AATCATCAGATAATTGAATC+TGG + chr8_1:28940262-28940281 None:intergenic 25.0%
! CTTGAAGAGAAAATTAATAC+CGG + chr8_1:28940410-28940429 None:intergenic 25.0%
!!! AATTTTCTCTTCAAGTTCTT+TGG - chr8_1:28940415-28940434 Msa1188600:intron 25.0%
!! TGATTTTCTTTTTCTTGAAG+TGG - chr8_1:28940572-28940591 Msa1188600:intron 25.0%
! CGAATGGTATAAAAAAAGTA+AGG + chr8_1:28940635-28940654 None:intergenic 25.0%
! ATATAAATCAGTTGCAAGTT+CGG - chr8_1:28940656-28940675 Msa1188600:intron 25.0%
! TGAATGGTATGTATAATGTT+TGG - chr8_1:28940708-28940727 Msa1188600:intron 25.0%
! TTATACTGTACTTAATCTCT+TGG - chr8_1:28940935-28940954 Msa1188600:intron 25.0%
!! TTCAGGTTCTTAAAATTTAC+GGG - chr8_1:28941049-28941068 Msa1188600:intron 25.0%
!!! CCTCAAAGTTATTGTTTTTT+CGG - chr8_1:28941075-28941094 Msa1188600:intron 25.0%
! TTGTAATTTATATTCCCAAG+AGG - chr8_1:28941170-28941189 Msa1188600:intron 25.0%
! AATATCACTGGGAAAAAAAA+AGG + chr8_1:28941325-28941344 None:intergenic 25.0%
! AGCAAATAATTATAAGCTTG+CGG + chr8_1:28941605-28941624 None:intergenic 25.0%
! AAATCTGGCATATGTAAATT+TGG - chr8_1:28941713-28941732 Msa1188600:intron 25.0%
! AATCTGGCATATGTAAATTT+GGG - chr8_1:28941714-28941733 Msa1188600:intron 25.0%
!! TTTTTACATATTACGTGTGA+TGG - chr8_1:28941949-28941968 Msa1188600:intron 25.0%
!! GTTGCAGTTTTCAAATAATA+TGG + chr8_1:28942214-28942233 None:intergenic 25.0%
AAATGAGAAAAGGATGGTAT+TGG + chr8_1:28936068-28936087 None:intergenic 30.0%
! TTGATGATTGATTGTTGGAA+CGG - chr8_1:28936558-28936577 Msa1188600:intron 30.0%
TGCTTATGCTTAAATGATTG+GGG - chr8_1:28936697-28936716 Msa1188600:CDS 30.0%
! AGATTAGTTAAGAACCCATT+TGG - chr8_1:28936935-28936954 Msa1188600:intron 30.0%
! GATTAGTTAAGAACCCATTT+GGG - chr8_1:28936936-28936955 Msa1188600:intron 30.0%
!!! AAGTTTTATTGTGAGGTTAG+AGG - chr8_1:28937066-28937085 Msa1188600:intron 30.0%
ATAACGAAAATAGGAGAGAA+TGG - chr8_1:28937125-28937144 Msa1188600:intron 30.0%
TTCTATGATTATGAGTCAAG+TGG - chr8_1:28937428-28937447 Msa1188600:intron 30.0%
!! CATCCATTTTGAGTACAATT+GGG - chr8_1:28938107-28938126 Msa1188600:CDS 30.0%
! ATAAATAGGCAAAGTACTTC+CGG + chr8_1:28938188-28938207 None:intergenic 30.0%
CTAACAAGAACCTGTAAATT+TGG - chr8_1:28938247-28938266 Msa1188600:CDS 30.0%
CTGACATACATTGAAATCAA+AGG + chr8_1:28938513-28938532 None:intergenic 30.0%
! ACGATCATTTTATGTAGATC+TGG + chr8_1:28938844-28938863 None:intergenic 30.0%
ATGATCGTCCACTAATTATT+TGG - chr8_1:28938856-28938875 Msa1188600:intron 30.0%
TCAACTACGTTTATAATGAG+AGG + chr8_1:28938883-28938902 None:intergenic 30.0%
ACATCAATTTATGGGAAAGT+TGG - chr8_1:28938991-28939010 Msa1188600:intron 30.0%
! TTTCCTTTTTCTGTCACAAA+GGG - chr8_1:28939080-28939099 Msa1188600:intron 30.0%
CTAGTAAGAGCTTATGATTT+AGG - chr8_1:28939188-28939207 Msa1188600:intron 30.0%
GCAAGGAAATAAAAAGAAAG+TGG + chr8_1:28939240-28939259 None:intergenic 30.0%
ACATATATCAGTCAATGCAA+TGG - chr8_1:28939351-28939370 Msa1188600:intron 30.0%
GGTTTATTCATAACTGCTTT+AGG - chr8_1:28939650-28939669 Msa1188600:intron 30.0%
GTTTCACTTGGAACAATATT+TGG + chr8_1:28939678-28939697 None:intergenic 30.0%
TCGATTCTACTAAATCATGT+AGG + chr8_1:28940037-28940056 None:intergenic 30.0%
! ATGTAGTTCTACTTGAAAAC+TGG - chr8_1:28940188-28940207 Msa1188600:CDS 30.0%
AATTGAATCTGGATATCCTT+GGG + chr8_1:28940251-28940270 None:intergenic 30.0%
TAATTGAATCTGGATATCCT+TGG + chr8_1:28940252-28940271 None:intergenic 30.0%
ACAAATTCTTCTGTGTTTGA+TGG - chr8_1:28940308-28940327 Msa1188600:CDS 30.0%
CAAATTCTTCTGTGTTTGAT+GGG - chr8_1:28940309-28940328 Msa1188600:CDS 30.0%
AAATTCTTCTGTGTTTGATG+GGG - chr8_1:28940310-28940329 Msa1188600:CDS 30.0%
GATTTGTATCATGAAAAACC+AGG + chr8_1:28940495-28940514 None:intergenic 30.0%
! GCAACTGATTTATATACGAA+TGG + chr8_1:28940651-28940670 None:intergenic 30.0%
TTATACATACCATTCATGTC+AGG + chr8_1:28940704-28940723 None:intergenic 30.0%
CATTTCATATGTTTGTGCTT+TGG - chr8_1:28940763-28940782 Msa1188600:intron 30.0%
AATGTTAAGATTAGCAGTTG+AGG + chr8_1:28940839-28940858 None:intergenic 30.0%
TCAACTGCTAATCTTAACAT+TGG - chr8_1:28940838-28940857 Msa1188600:intron 30.0%
ATAAACTTCCACATTACCAT+TGG + chr8_1:28940919-28940938 None:intergenic 30.0%
CCGAAAAAACAATAACTTTG+AGG + chr8_1:28941078-28941097 None:intergenic 30.0%
TTAGACTTCCAAGTATATTC+TGG + chr8_1:28941202-28941221 None:intergenic 30.0%
TTCATTGCCCAATATCTATT+AGG - chr8_1:28941352-28941371 Msa1188600:intron 30.0%
TCATTGCCCAATATCTATTA+GGG - chr8_1:28941353-28941372 Msa1188600:intron 30.0%
AGTGATCCCTAATAGATATT+GGG + chr8_1:28941362-28941381 None:intergenic 30.0%
AAGTGATCCCTAATAGATAT+TGG + chr8_1:28941363-28941382 None:intergenic 30.0%
!! TCATTTTTCACAAGCAACAA+AGG + chr8_1:28941387-28941406 None:intergenic 30.0%
! TTGTTGCTTGTGAAAAATGA+TGG - chr8_1:28941387-28941406 Msa1188600:intron 30.0%
! TGTTGCTTGTGAAAAATGAT+GGG - chr8_1:28941388-28941407 Msa1188600:intron 30.0%
TAAACAGATAGATTGTCAAG+CGG + chr8_1:28941431-28941450 None:intergenic 30.0%
TCGGTTCTTGAATAGATAAA+GGG + chr8_1:28941531-28941550 None:intergenic 30.0%
! ATCGGTTCTTGAATAGATAA+AGG + chr8_1:28941532-28941551 None:intergenic 30.0%
GCAAATAATTATAAGCTTGC+GGG + chr8_1:28941604-28941623 None:intergenic 30.0%
AGATTTCATATAGAACTGCA+TGG + chr8_1:28941699-28941718 None:intergenic 30.0%
ATGCAGTTCTATATGAAATC+TGG - chr8_1:28941698-28941717 Msa1188600:intron 30.0%
ATCTGGCATATGTAAATTTG+GGG - chr8_1:28941715-28941734 Msa1188600:intron 30.0%
! TATGTTTCCAAAAAAGTGCA+TGG - chr8_1:28941917-28941936 Msa1188600:intron 30.0%
!! AGCTAAGTTGATGAAGTTAA+TGG + chr8_1:28942078-28942097 None:intergenic 30.0%
! ATCTAACTTTTTGTCCTGAA+GGG - chr8_1:28942175-28942194 Msa1188600:CDS 30.0%
! ACCTGTTTTACTTTCTTTAC+TGG - chr8_1:28942468-28942487 Msa1188600:five_prime_UTR 30.0%
TAGTTGACCTATGAAAGTTA+TGG - chr8_1:28942529-28942548 Msa1188600:five_prime_UTR 30.0%
TAGTTGACCATAACTTTCAT+AGG + chr8_1:28942539-28942558 None:intergenic 30.0%
AATGGATAGTTAGTTAGCCA+AGG - chr8_1:28935946-28935965 Msa1188600:three_prime_UTR 35.0%
GTGTCAATCTCATGTTGAAT+TGG + chr8_1:28936043-28936062 None:intergenic 35.0%
TCAGAGAAATGAGAAAAGGA+TGG + chr8_1:28936074-28936093 None:intergenic 35.0%
TGTAAGAGGATGTGTAGATT+CGG + chr8_1:28936126-28936145 None:intergenic 35.0%
TGTATTCGGGTCGTAATATT+GGG + chr8_1:28936188-28936207 None:intergenic 35.0%
TTGTATTCGGGTCGTAATAT+TGG + chr8_1:28936189-28936208 None:intergenic 35.0%
TGAGCAAGGAACATTGTATT+CGG + chr8_1:28936202-28936221 None:intergenic 35.0%
TATGCTTAAATGATTGGGGA+AGG - chr8_1:28936701-28936720 Msa1188600:CDS 35.0%
ATGCTTAAATGATTGGGGAA+GGG - chr8_1:28936702-28936721 Msa1188600:CDS 35.0%
AGATCTTCTCTATGACAAGT+GGG + chr8_1:28937292-28937311 None:intergenic 35.0%
TGTTGAGATTTACACCATGT+TGG + chr8_1:28937324-28937343 None:intergenic 35.0%
CTAACCAAACTTCAAACAGA+GGG - chr8_1:28937796-28937815 Msa1188600:CDS 35.0%
TTGTACTCAAAATGGATGGA+TGG + chr8_1:28938105-28938124 None:intergenic 35.0%
CCAATTGTACTCAAAATGGA+TGG + chr8_1:28938109-28938128 None:intergenic 35.0%
!! CCATCCATTTTGAGTACAAT+TGG - chr8_1:28938106-28938125 Msa1188600:CDS 35.0%
TTGCCCAATTGTACTCAAAA+TGG + chr8_1:28938113-28938132 None:intergenic 35.0%
TACTTCCGGTTTCATATCTA+GGG + chr8_1:28938174-28938193 None:intergenic 35.0%
GGTTCTTGTTAGCATATAGT+GGG + chr8_1:28938239-28938258 None:intergenic 35.0%
AGGTTCTTGTTAGCATATAG+TGG + chr8_1:28938240-28938259 None:intergenic 35.0%
CAAGTTCGATCATCCTATTT+GGG - chr8_1:28938279-28938298 Msa1188600:CDS 35.0%
CGATTTATATGCTCCATCTT+GGG + chr8_1:28938688-28938707 None:intergenic 35.0%
ACGATTTATATGCTCCATCT+TGG + chr8_1:28938689-28938708 None:intergenic 35.0%
TGAGAGGACCAAATAATTAG+TGG + chr8_1:28938867-28938886 None:intergenic 35.0%
ATGCAATGTGTAAAGCAGTT+TGG - chr8_1:28938902-28938921 Msa1188600:intron 35.0%
! GTTTCCTTTTTCTGTCACAA+AGG - chr8_1:28939079-28939098 Msa1188600:intron 35.0%
TTGAGAAACCTGTATCAATC+AGG - chr8_1:28939112-28939131 Msa1188600:intron 35.0%
TTATGATTTAGGAGCTGTGA+TGG - chr8_1:28939199-28939218 Msa1188600:intron 35.0%
! AAATTTAGGATGTGTGTGAG+AGG - chr8_1:28939468-28939487 Msa1188600:intron 35.0%
!! CTGATTTGTTATGATGTACG+TGG - chr8_1:28939629-28939648 Msa1188600:intron 35.0%
! CTAGCAACACACTAGTTTAT+TGG - chr8_1:28939974-28939993 Msa1188600:intron 35.0%
CTCAACATACACTCTTCTAT+TGG + chr8_1:28940072-28940091 None:intergenic 35.0%
ATTGAATCTGGATATCCTTG+GGG + chr8_1:28940250-28940269 None:intergenic 35.0%
TTTGTGTCTGCTCAACATTA+CGG + chr8_1:28940289-28940308 None:intergenic 35.0%
AAAATTAATACCGGTCTCAC+AGG + chr8_1:28940401-28940420 None:intergenic 35.0%
TATCATGAAAAACCAGGCTT+AGG + chr8_1:28940489-28940508 None:intergenic 35.0%
! TGATACAAATCTTTGGTGAC+AGG - chr8_1:28940504-28940523 Msa1188600:intron 35.0%
! GATACAAATCTTTGGTGACA+GGG - chr8_1:28940505-28940524 Msa1188600:intron 35.0%
! ATACAAATCTTTGGTGACAG+GGG - chr8_1:28940506-28940525 Msa1188600:intron 35.0%
TGTCCATTCTACATGAAAAC+TGG - chr8_1:28940538-28940557 Msa1188600:intron 35.0%
! CTTCCAGTTTTCATGTAGAA+TGG + chr8_1:28940544-28940563 None:intergenic 35.0%
CATTCTACATGAAAACTGGA+AGG - chr8_1:28940542-28940561 Msa1188600:intron 35.0%
TACAATCATCCTGACATGAA+TGG - chr8_1:28940692-28940711 Msa1188600:intron 35.0%
! TGTCAAATCCAATGGTAATG+TGG - chr8_1:28940908-28940927 Msa1188600:intron 35.0%
CAATGTAAACAAACACCTGT+TGG - chr8_1:28940983-28941002 Msa1188600:intron 35.0%
TATTCTGGATGATACCTCTT+GGG + chr8_1:28941187-28941206 None:intergenic 35.0%
ATATTCTGGATGATACCTCT+TGG + chr8_1:28941188-28941207 None:intergenic 35.0%
GGTATCATCCAGAATATACT+TGG - chr8_1:28941191-28941210 Msa1188600:intron 35.0%
GAAGTCTAATTCATCTCATC+TGG - chr8_1:28941213-28941232 Msa1188600:intron 35.0%
!! GTTATTTGTTTTCCAGTCTC+AGG - chr8_1:28941235-28941254 Msa1188600:intron 35.0%
GTTGCTTGTGAAAAATGATG+GGG - chr8_1:28941389-28941408 Msa1188600:intron 35.0%
TTGCTTGTGAAAAATGATGG+GGG - chr8_1:28941390-28941409 Msa1188600:intron 35.0%
!!! TTTTGGGGTAAAACCAGTAA+TGG + chr8_1:28941495-28941514 None:intergenic 35.0%
! AGATAAAGGGAAGAAGTACA+AGG + chr8_1:28941518-28941537 None:intergenic 35.0%
TATCTATTCAAGAACCGATC+TGG - chr8_1:28941533-28941552 Msa1188600:intron 35.0%
! TAGATGTTTTATGCAGAGAC+TGG + chr8_1:28941645-28941664 None:intergenic 35.0%
AATGTTAAACTTACTGCTGC+AGG - chr8_1:28941797-28941816 Msa1188600:intron 35.0%
ATGTTAAACTTACTGCTGCA+GGG - chr8_1:28941798-28941817 Msa1188600:intron 35.0%
AACAAACATACCTCTCTTCT+TGG + chr8_1:28941827-28941846 None:intergenic 35.0%
!!! CAAGTAACCATGCACTTTTT+TGG + chr8_1:28941927-28941946 None:intergenic 35.0%
! CAAAAAAGTGCATGGTTACT+TGG - chr8_1:28941925-28941944 Msa1188600:intron 35.0%
! CATCTAACTTTTTGTCCTGA+AGG - chr8_1:28942174-28942193 Msa1188600:CDS 35.0%
GCATGATCTCAATATTGTTC+CGG + chr8_1:28942370-28942389 None:intergenic 35.0%
GCCAGTAAAGAAAGTAAAAC+AGG + chr8_1:28942472-28942491 None:intergenic 35.0%
TTTACTGGCAAATTTCTCTC+TGG - chr8_1:28942483-28942502 Msa1188600:five_prime_UTR 35.0%
GATTGGTATCAGTGCTTATT+TGG - chr8_1:28942505-28942524 Msa1188600:five_prime_UTR 35.0%
! TGAGAAAAGGATGGTATTGG+TGG + chr8_1:28936065-28936084 None:intergenic 40.0%
!! GTGTAGATTCGGTTTTCCAT+TGG + chr8_1:28936115-28936134 None:intergenic 40.0%
GAGCAAGGAACATTGTATTC+GGG + chr8_1:28936201-28936220 None:intergenic 40.0%
AATCTCCACCACTAATCCTT+GGG - chr8_1:28936312-28936331 Msa1188600:intron 40.0%
! GCGTTTAAGATCAAGTGAAG+CGG + chr8_1:28936398-28936417 None:intergenic 40.0%
GATCTTAAACGCTCTTCTGA+TGG - chr8_1:28936406-28936425 Msa1188600:intron 40.0%
! GTGATGTGGATTATGACACT+TGG - chr8_1:28936510-28936529 Msa1188600:intron 40.0%
!!! TGTTGGAACGGTTTTAGAGT+TGG - chr8_1:28936570-28936589 Msa1188600:intron 40.0%
! GCACCTTCGATTTGAACTAT+CGG - chr8_1:28936832-28936851 Msa1188600:intron 40.0%
TCACCGATAGTTCAAATCGA+AGG + chr8_1:28936838-28936857 None:intergenic 40.0%
GAACTATCGGTGATGAAGAA+TGG - chr8_1:28936845-28936864 Msa1188600:intron 40.0%
AGTTAAGAACCCATTTGGGT+TGG - chr8_1:28936940-28936959 Msa1188600:intron 40.0%
AAACTCACCTCTTCAGTTCT+GGG - chr8_1:28937092-28937111 Msa1188600:intron 40.0%
AATAACACCCAGAACTGAAG+AGG + chr8_1:28937102-28937121 None:intergenic 40.0%
CAGATCTTCTCTATGACAAG+TGG + chr8_1:28937293-28937312 None:intergenic 40.0%
GATTATGAGTCAAGTGGCAT+TGG - chr8_1:28937434-28937453 Msa1188600:intron 40.0%
CTGTCAAATAGAAGCCATAG+TGG + chr8_1:28937651-28937670 None:intergenic 40.0%
GCTAACCAAACTTCAAACAG+AGG - chr8_1:28937795-28937814 Msa1188600:CDS 40.0%
GTACTTCCGGTTTCATATCT+AGG + chr8_1:28938175-28938194 None:intergenic 40.0%
CTTTGCCTATTTATCCTCAG+AGG - chr8_1:28938194-28938213 Msa1188600:CDS 40.0%
GCAAGTTCGATCATCCTATT+TGG - chr8_1:28938278-28938297 Msa1188600:CDS 40.0%
TAGTCACCTCTTTCCAATCT+GGG + chr8_1:28938321-28938340 None:intergenic 40.0%
ATAGTCACCTCTTTCCAATC+TGG + chr8_1:28938322-28938341 None:intergenic 40.0%
! CTCAACATTTTGTCCCAAGA+TGG - chr8_1:28938672-28938691 Msa1188600:intron 40.0%
TCACCCTTTGTGACAGAAAA+AGG + chr8_1:28939086-28939105 None:intergenic 40.0%
ACACAGTTCCTGATTGATAC+AGG + chr8_1:28939123-28939142 None:intergenic 40.0%
AGTCAATGCAATGGTGAATG+TGG - chr8_1:28939360-28939379 Msa1188600:intron 40.0%
GATCCAGTGCGAAGAAATTT+AGG - chr8_1:28939454-28939473 Msa1188600:intron 40.0%
CATCCTAAATTTCTTCGCAC+TGG + chr8_1:28939460-28939479 None:intergenic 40.0%
!!! ACCTCTGTTTTGGTTGCAAA+AGG - chr8_1:28939556-28939575 Msa1188600:intron 40.0%
! ACCTTTTGCAACCAAAACAG+AGG + chr8_1:28939560-28939579 None:intergenic 40.0%
TAATTGCGAGTTCTACTCAC+TGG + chr8_1:28939732-28939751 None:intergenic 40.0%
! GCATTTTCAGAGGGAACATT+TGG + chr8_1:28939883-28939902 None:intergenic 40.0%
! GAAACATCGGCATTTTCAGA+GGG + chr8_1:28939892-28939911 None:intergenic 40.0%
! AGAAACATCGGCATTTTCAG+AGG + chr8_1:28939893-28939912 None:intergenic 40.0%
TCTGAAAATGCCGATGTTTC+TGG - chr8_1:28939892-28939911 Msa1188600:intron 40.0%
ATCAATATCTAACCGCGCAA+GGG + chr8_1:28939942-28939961 None:intergenic 40.0%
CACTGTCGCATAATAGCAAA+GGG - chr8_1:28940372-28940391 Msa1188600:CDS 40.0%
! TACAAATCTTTGGTGACAGG+GGG - chr8_1:28940507-28940526 Msa1188600:intron 40.0%
TCATGTCAGGATGATTGTAG+CGG + chr8_1:28940691-28940710 None:intergenic 40.0%
GCTTGATAAAAAGATGCAGC+TGG + chr8_1:28940874-28940893 None:intergenic 40.0%
ACCATTGGATTTGACAGACT+GGG + chr8_1:28940904-28940923 None:intergenic 40.0%
TACCATTGGATTTGACAGAC+TGG + chr8_1:28940905-28940924 None:intergenic 40.0%
!! ATTTGTTTTCCAGTCTCAGG+TGG - chr8_1:28941238-28941257 Msa1188600:intron 40.0%
!! TTTGTTTTCCAGTCTCAGGT+GGG - chr8_1:28941239-28941258 Msa1188600:intron 40.0%
CATCACATTCAATCTGTCCA+GGG + chr8_1:28941292-28941311 None:intergenic 40.0%
ACATCACATTCAATCTGTCC+AGG + chr8_1:28941293-28941312 None:intergenic 40.0%
!! GGAAGAAGTACAAGGTTTTG+GGG + chr8_1:28941510-28941529 None:intergenic 40.0%
!! GGGAAGAAGTACAAGGTTTT+GGG + chr8_1:28941511-28941530 None:intergenic 40.0%
!! AGGGAAGAAGTACAAGGTTT+TGG + chr8_1:28941512-28941531 None:intergenic 40.0%
!! GTTTTGACAGTGATGTTGTG+CGG + chr8_1:28941769-28941788 None:intergenic 40.0%
AAAACTGCAACGTGCAAGTT+TGG - chr8_1:28942223-28942242 Msa1188600:CDS 40.0%
TACAACCAATGGAGGAGAAA+CGG - chr8_1:28942315-28942334 Msa1188600:CDS 40.0%
TGGCAAATTTCTCTCTGGAT+TGG - chr8_1:28942488-28942507 Msa1188600:five_prime_UTR 40.0%
TCCTCTTACAACATCCCAAC+CGG - chr8_1:28936136-28936155 Msa1188600:CDS 45.0%
TTCGGGTCGTAATATTGGGT+CGG + chr8_1:28936184-28936203 None:intergenic 45.0%
TGTCGAAATCGGAGGAGTAA+CGG + chr8_1:28936267-28936286 None:intergenic 45.0%
AGGAGGAGCAATGTCGAAAT+CGG + chr8_1:28936278-28936297 None:intergenic 45.0%
GAATCTCCACCACTAATCCT+TGG - chr8_1:28936311-28936330 Msa1188600:intron 45.0%
CTATCGGTGATGAAGAATGG+TGG - chr8_1:28936848-28936867 Msa1188600:intron 45.0%
! AAATTAGCACCGAGACCTTG+AGG + chr8_1:28937001-28937020 None:intergenic 45.0%
CAAACTCACCTCTTCAGTTC+TGG - chr8_1:28937091-28937110 Msa1188600:intron 45.0%
TCTATGACAAGTGGGAGACA+TGG + chr8_1:28937284-28937303 None:intergenic 45.0%
GATCTGCTACTGAACCAACA+TGG - chr8_1:28937307-28937326 Msa1188600:intron 45.0%
GAAATAACCAATGCACGCGT+GGG + chr8_1:28937349-28937368 None:intergenic 45.0%
TGAAATAACCAATGCACGCG+TGG + chr8_1:28937350-28937369 None:intergenic 45.0%
CATAGTGGCGCTACATATAG+TGG + chr8_1:28937636-28937655 None:intergenic 45.0%
CACTATATGTAGCGCCACTA+TGG - chr8_1:28937634-28937653 Msa1188600:CDS 45.0%
! TGTGCCCTCTGTTTGAAGTT+TGG + chr8_1:28937803-28937822 None:intergenic 45.0%
CAATTGGGCAAAACGAAGCT+TGG - chr8_1:28938122-28938141 Msa1188600:CDS 45.0%
TTGGTATACGTCGAACTCAC+TGG - chr8_1:28938141-28938160 Msa1188600:CDS 45.0%
AAGCGCCCTAGATATGAAAC+CGG - chr8_1:28938166-28938185 Msa1188600:CDS 45.0%
GCAGCTCTCTCCAAATTTAC+AGG + chr8_1:28938260-28938279 None:intergenic 45.0%
! TCATCCTATTTGGGTTCCTG+CGG - chr8_1:28938288-28938307 Msa1188600:CDS 45.0%
TGGAATCCCAGATTGGAAAG+AGG - chr8_1:28938312-28938331 Msa1188600:intron 45.0%
GTTCTACTCACTGGACAATC+TGG + chr8_1:28939723-28939742 None:intergenic 45.0%
CTCAGGTAAGCCAGAAACAT+CGG + chr8_1:28939905-28939924 None:intergenic 45.0%
!! ATGTTTCTGGCTTACCTGAG+AGG - chr8_1:28939905-28939924 Msa1188600:intron 45.0%
TCAATATCTAACCGCGCAAG+GGG + chr8_1:28939941-28939960 None:intergenic 45.0%
GATCAATATCTAACCGCGCA+AGG + chr8_1:28939943-28939962 None:intergenic 45.0%
ATGCAAATTCCATCACCCCA+AGG - chr8_1:28940232-28940251 Msa1188600:CDS 45.0%
TCTGTGTTTGATGGGGCAAT+AGG - chr8_1:28940317-28940336 Msa1188600:CDS 45.0%
TGCGACAGTGGAGATATAAG+AGG + chr8_1:28940362-28940381 None:intergenic 45.0%
!! CCTTTGCTATTATGCGACAG+TGG + chr8_1:28940374-28940393 None:intergenic 45.0%
CCACTGTCGCATAATAGCAA+AGG - chr8_1:28940371-28940390 Msa1188600:CDS 45.0%
!! TGCAGACACAGGTGGATTAA+TGG + chr8_1:28940794-28940813 None:intergenic 45.0%
TAATCCACCTGTGTCTGCAT+TGG - chr8_1:28940795-28940814 Msa1188600:intron 45.0%
AATCCACCTGTGTCTGCATT+GGG - chr8_1:28940796-28940815 Msa1188600:intron 45.0%
TTGAGGACGCCAAAACAGAA+GGG + chr8_1:28940822-28940841 None:intergenic 45.0%
CCATTGGATTTGACAGACTG+GGG + chr8_1:28940903-28940922 None:intergenic 45.0%
ACACCTGTTGGTCATTCTTG+TGG - chr8_1:28940995-28941014 Msa1188600:intron 45.0%
CACCTGTTGGTCATTCTTGT+GGG - chr8_1:28940996-28941015 Msa1188600:intron 45.0%
ACCTGTTGGTCATTCTTGTG+GGG - chr8_1:28940997-28941016 Msa1188600:intron 45.0%
TTGGTCATTCTTGTGGGGTA+TGG - chr8_1:28941002-28941021 Msa1188600:intron 45.0%
TGGTCATTCTTGTGGGGTAT+GGG - chr8_1:28941003-28941022 Msa1188600:intron 45.0%
! TGTGAAAAATGATGGGGGCT+AGG - chr8_1:28941395-28941414 Msa1188600:intron 45.0%
! GTGAAAAATGATGGGGGCTA+GGG - chr8_1:28941396-28941415 Msa1188600:intron 45.0%
! TGAAAAATGATGGGGGCTAG+GGG - chr8_1:28941397-28941416 Msa1188600:intron 45.0%
GACGACCACTAACATGCTTT+AGG - chr8_1:28941453-28941472 Msa1188600:intron 45.0%
! CCAGTAATGGAATGAGCTAC+TGG + chr8_1:28941482-28941501 None:intergenic 45.0%
CCAGTAGCTCATTCCATTAC+TGG - chr8_1:28941479-28941498 Msa1188600:intron 45.0%
AAATTTGACCATCCACCACC+CGG - chr8_1:28942256-28942275 Msa1188600:CDS 45.0%
ATGGAGATGGCTAAGTCACA+AGG - chr8_1:28942286-28942305 Msa1188600:CDS 45.0%
CAAGGAGCTTCTACAACCAA+TGG - chr8_1:28942304-28942323 Msa1188600:CDS 45.0%
!!! AATAAAAATATAATTTTCAT+AGG + chr8_1:28938359-28938378 None:intergenic 5.0%
!!! TTTATTTTTATTTTTACAAA+TGG + chr8_1:28942598-28942617 None:intergenic 5.0%
TCCGGTTGGGATGTTGTAAG+AGG + chr8_1:28936140-28936159 None:intergenic 50.0%
! TGTTGTTGATGGAGCTGCTC+CGG + chr8_1:28936158-28936177 None:intergenic 50.0%
TCGGGTCGTAATATTGGGTC+GGG + chr8_1:28936183-28936202 None:intergenic 50.0%
! GAAATCGGAGGAGTAACGGA+TGG + chr8_1:28936263-28936282 None:intergenic 50.0%
AGGAGCAATGTCGAAATCGG+AGG + chr8_1:28936275-28936294 None:intergenic 50.0%
GATTTCGACATTGCTCCTCC+TGG - chr8_1:28936277-28936296 Msa1188600:CDS 50.0%
ATTCTAGACGCAACTCCAGG+AGG + chr8_1:28936295-28936314 None:intergenic 50.0%
GAGATTCTAGACGCAACTCC+AGG + chr8_1:28936298-28936317 None:intergenic 50.0%
! ATTCGCCCAAGGATTAGTGG+TGG + chr8_1:28936320-28936339 None:intergenic 50.0%
AGCATTCGCCCAAGGATTAG+TGG + chr8_1:28936323-28936342 None:intergenic 50.0%
AAGATCAAGTGAAGCGGCAG+AGG + chr8_1:28936392-28936411 None:intergenic 50.0%
TAGCTACGGCACTTAAGAGC+CGG - chr8_1:28937201-28937220 Msa1188600:CDS 50.0%
!! GAGTCAAGTGGCATTGGCTT+AGG - chr8_1:28937440-28937459 Msa1188600:intron 50.0%
!! TCAAGTGGCATTGGCTTAGG+TGG - chr8_1:28937443-28937462 Msa1188600:intron 50.0%
!! CAAGTGGCATTGGCTTAGGT+GGG - chr8_1:28937444-28937463 Msa1188600:intron 50.0%
!! AAGTGGCATTGGCTTAGGTG+GGG - chr8_1:28937445-28937464 Msa1188600:intron 50.0%
! GGTTTCATATCTAGGGCGCT+TGG + chr8_1:28938167-28938186 None:intergenic 50.0%
! CCTGGCCTCTGAGGATAAAT+AGG + chr8_1:28938202-28938221 None:intergenic 50.0%
CCTATTTATCCTCAGAGGCC+AGG - chr8_1:28938199-28938218 Msa1188600:CDS 50.0%
! CATCCTATTTGGGTTCCTGC+GGG - chr8_1:28938289-28938308 Msa1188600:CDS 50.0%
CTCTCGGGAAGAGTTTCACT+TGG + chr8_1:28939690-28939709 None:intergenic 50.0%
!! ATCTGGTTCTCCAGGTCTCT+CGG + chr8_1:28939706-28939725 None:intergenic 50.0%
!! ACTGGACAATCTGGTTCTCC+AGG + chr8_1:28939714-28939733 None:intergenic 50.0%
CAATATCTAACCGCGCAAGG+GGG + chr8_1:28939940-28939959 None:intergenic 50.0%
TGGGCTCCACTGAGTTTATG+TGG - chr8_1:28940009-28940028 Msa1188600:intron 50.0%
TAGGCGCCACATAAACTCAG+TGG + chr8_1:28940018-28940037 None:intergenic 50.0%
TCTGGATATCCTTGGGGTGA+TGG + chr8_1:28940244-28940263 None:intergenic 50.0%
ACCTAAACATCGCCTAAGCC+TGG - chr8_1:28940474-28940493 Msa1188600:intron 50.0%
ACCAGGCTTAGGCGATGTTT+AGG + chr8_1:28940478-28940497 None:intergenic 50.0%
AGGATGATTGTAGCGGCAAC+TGG + chr8_1:28940684-28940703 None:intergenic 50.0%
! TGCATTGGGCCCTTCTGTTT+TGG - chr8_1:28940810-28940829 Msa1188600:intron 50.0%
GTTGAGGACGCCAAAACAGA+AGG + chr8_1:28940823-28940842 None:intergenic 50.0%
CCCCAGTCTGTCAAATCCAA+TGG - chr8_1:28940900-28940919 Msa1188600:intron 50.0%
ACCCCACAAGAATGACCAAC+AGG + chr8_1:28941001-28941020 None:intergenic 50.0%
AGTCTCAGGTGGGAGTAACA+GGG - chr8_1:28941249-28941268 Msa1188600:intron 50.0%
GGCAGCCTAAAGCATGTTAG+TGG + chr8_1:28941461-28941480 None:intergenic 50.0%
GTGATGTTGTGCGGTCGATT+GGG + chr8_1:28941760-28941779 None:intergenic 50.0%
AGTGATGTTGTGCGGTCGAT+TGG + chr8_1:28941761-28941780 None:intergenic 50.0%
TGCAGGGTTACCAAGAAGAG+AGG - chr8_1:28941814-28941833 Msa1188600:intron 50.0%
GACAGATCTCAACACCCTTC+AGG + chr8_1:28942192-28942211 None:intergenic 50.0%
AGCCATCTCCATCACTTCTC+CGG + chr8_1:28942278-28942297 None:intergenic 50.0%
GGAGCTTCTACAACCAATGG+AGG - chr8_1:28942307-28942326 Msa1188600:CDS 50.0%
AGAACCAGGCACATCTTCGT+TGG + chr8_1:28942344-28942363 None:intergenic 50.0%
TATTGTTCCGGAGCAGAACC+AGG + chr8_1:28942358-28942377 None:intergenic 50.0%
TTGATGGAGCTGCTCCGGTT+GGG + chr8_1:28936153-28936172 None:intergenic 55.0%
TGGGTCGGGGATGTTGTTGA+TGG + chr8_1:28936169-28936188 None:intergenic 55.0%
CGGGTCGTAATATTGGGTCG+GGG + chr8_1:28936182-28936201 None:intergenic 55.0%
!! GTAACGGATGGAGGAAGCAG+CGG + chr8_1:28936251-28936270 None:intergenic 55.0%
!! ATCGGAGGAGTAACGGATGG+AGG + chr8_1:28936260-28936279 None:intergenic 55.0%
!! AGAACCCATTTGGGTTGGCC+TGG - chr8_1:28936945-28936964 Msa1188600:intron 55.0%
ACCACCAGGCCAACCCAAAT+GGG + chr8_1:28936952-28936971 None:intergenic 55.0%
TACCACCAGGCCAACCCAAA+TGG + chr8_1:28936953-28936972 None:intergenic 55.0%
!! TTGGGTTGGCCTGGTGGTAT+TGG - chr8_1:28936954-28936973 Msa1188600:intron 55.0%
!! TTGGCCTGGTGGTATTGGCT+TGG - chr8_1:28936959-28936978 Msa1188600:intron 55.0%
!! TGGCCTGGTGGTATTGGCTT+GGG - chr8_1:28936960-28936979 Msa1188600:intron 55.0%
! ACCTGAGAGTGTGCTCCTCA+AGG - chr8_1:28936983-28937002 Msa1188600:intron 55.0%
! ACCTTGAGGAGCACACTCTC+AGG + chr8_1:28936987-28937006 None:intergenic 55.0%
GAGTGTGCTCCTCAAGGTCT+CGG - chr8_1:28936989-28937008 Msa1188600:intron 55.0%
CAACATTCCCACGCGTGCAT+TGG - chr8_1:28937339-28937358 Msa1188600:intron 55.0%
TGGGCACAATCCTTCTCTCC+TGG + chr8_1:28938220-28938239 None:intergenic 55.0%
GAAACTCTTCCCGAGAGACC+TGG - chr8_1:28939693-28939712 Msa1188600:intron 55.0%
!! TCTGGTTCTCCAGGTCTCTC+GGG + chr8_1:28939705-28939724 None:intergenic 55.0%
CAAAGGGCTTCCTGTGAGAC+CGG - chr8_1:28940388-28940407 Msa1188600:CDS 55.0%
! TCTTTGGTGACAGGGGGAAG+TGG - chr8_1:28940513-28940532 Msa1188600:intron 55.0%
CTGTTACTCCCACCTGAGAC+TGG + chr8_1:28941250-28941269 None:intergenic 55.0%
CAGTCTCAGGTGGGAGTAAC+AGG - chr8_1:28941248-28941267 Msa1188600:intron 55.0%
ACTATCTATCCTCAGCGCCC+TGG - chr8_1:28941272-28941291 Msa1188600:intron 55.0%
TTGTGCGGTCGATTGGGTGA+TGG + chr8_1:28941754-28941773 None:intergenic 55.0%
ATCTCCATCACTTCTCCGGG+TGG + chr8_1:28942274-28942293 None:intergenic 55.0%
! ACCCGGAGAAGTGATGGAGA+TGG - chr8_1:28942273-28942292 Msa1188600:CDS 55.0%
GCCATCTCCATCACTTCTCC+GGG + chr8_1:28942277-28942296 None:intergenic 55.0%
GGTCTCCGTTTCTCCTCCAT+TGG + chr8_1:28942323-28942342 None:intergenic 55.0%
GAGACCAACGAAGATGTGCC+TGG - chr8_1:28942337-28942356 Msa1188600:CDS 55.0%
!! AGATGTGCCTGGTTCTGCTC+CGG - chr8_1:28942348-28942367 Msa1188600:CDS 55.0%
! GTTGATGGAGCTGCTCCGGT+TGG + chr8_1:28936154-28936173 None:intergenic 60.0%
!! GAGGGGAAAGCATTCGCCCA+AGG + chr8_1:28936331-28936350 None:intergenic 60.0%
ATTCGTTGCAGCAGCGGCGA+CGG + chr8_1:28936365-28936384 None:intergenic 60.0%
GGCGACATTCGTTGCAGCAG+CGG + chr8_1:28936371-28936390 None:intergenic 60.0%
!! ACCCATTTGGGTTGGCCTGG+TGG - chr8_1:28936948-28936967 Msa1188600:intron 60.0%
GGTCCCAAGCCAATACCACC+AGG + chr8_1:28936966-28936985 None:intergenic 60.0%
TCCTCAGAGGCCAGGAGAGA+AGG - chr8_1:28938207-28938226 Msa1188600:CDS 60.0%
TCCTTCTCTCCTGGCCTCTG+AGG + chr8_1:28938211-28938230 None:intergenic 60.0%
CCACCCGCAGGAACCCAAAT+AGG + chr8_1:28938295-28938314 None:intergenic 60.0%
! CCTATTTGGGTTCCTGCGGG+TGG - chr8_1:28938292-28938311 Msa1188600:CDS 60.0%
! CAATCTGGGATTCCACCCGC+AGG + chr8_1:28938307-28938326 None:intergenic 60.0%
CTGCGGGTGGAATCCCAGAT+TGG - chr8_1:28938305-28938324 Msa1188600:intron 60.0%
TGGCTTACCTGAGAGGCCAC+AGG - chr8_1:28939912-28939931 Msa1188600:intron 60.0%
GAAGGGCCCAATGCAGACAC+AGG + chr8_1:28940805-28940824 None:intergenic 60.0%
!! TCAATCTGTCCAGGGCGCTG+AGG + chr8_1:28941284-28941303 None:intergenic 60.0%
!! TCACTTCTCCGGGTGGTGGA+TGG + chr8_1:28942267-28942286 None:intergenic 60.0%
TCCACCACCCGGAGAAGTGA+TGG - chr8_1:28942267-28942286 Msa1188600:CDS 60.0%
TCCATCACTTCTCCGGGTGG+TGG + chr8_1:28942271-28942290 None:intergenic 60.0%
CGGTGCGGCGATAGTGAGCA+AGG + chr8_1:28936216-28936235 None:intergenic 65.0%
ACGGATGGAGGAAGCAGCGG+CGG + chr8_1:28936248-28936267 None:intergenic 65.0%
GGGCCCAATGCAGACACAGG+TGG + chr8_1:28940802-28940821 None:intergenic 65.0%
GATGGAGGAAGCAGCGGCGG+CGG + chr8_1:28936245-28936264 None:intergenic 70.0%
GGAAGCAGCGGCGGCGGCTT+CGG + chr8_1:28936239-28936258 None:intergenic 75.0%
CGTTGCAGCAGCGGCGACGG+CGG + chr8_1:28936362-28936381 None:intergenic 75.0%
GGGGGCTCCTGTGGCCTCTC+AGG + chr8_1:28939922-28939941 None:intergenic 75.0%
GCCACAGGAGCCCCCTTGCG+CGG - chr8_1:28939927-28939946 Msa1188600:intron 75.0%
ACCGCGCAAGGGGGCTCCTG+TGG + chr8_1:28939931-28939950 None:intergenic 75.0%
! AGCAGCGGCGGCGGCTTCGG+CGG + chr8_1:28936236-28936255 None:intergenic 80.0%
! AGCAGCGGCGACGGCGGCAG+CGG + chr8_1:28936356-28936375 None:intergenic 80.0%
! CGGCGGCGGCTTCGGCGGTG+CGG + chr8_1:28936231-28936250 None:intergenic 85.0%
! CGACGGCGGCAGCGGCGGAG+GGG + chr8_1:28936348-28936367 None:intergenic 85.0%
! GCGACGGCGGCAGCGGCGGA+GGG + chr8_1:28936349-28936368 None:intergenic 85.0%
! AGCGGCGACGGCGGCAGCGG+CGG + chr8_1:28936353-28936372 None:intergenic 85.0%
! GGCGACGGCGGCAGCGGCGG+AGG + chr8_1:28936350-28936369 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 28935851 28942655 28935851 ID=Msa1188600;Name=Msa1188600
chr8_1 mRNA 28935851 28942655 28935851 ID=Msa1188600-mRNA-1;Parent=Msa1188600;Name=Msa1188600-mRNA-1;_AED=0.04;_eAED=0.04;_QI=264|1|1|1|1|1|11|274|514
chr8_1 exon 28935851 28936310 28935851 ID=Msa1188600-mRNA-1:exon:10184;Parent=Msa1188600-mRNA-1
chr8_1 exon 28936671 28936802 28936671 ID=Msa1188600-mRNA-1:exon:10183;Parent=Msa1188600-mRNA-1
chr8_1 exon 28937196 28937255 28937196 ID=Msa1188600-mRNA-1:exon:10182;Parent=Msa1188600-mRNA-1
chr8_1 exon 28937585 28937715 28937585 ID=Msa1188600-mRNA-1:exon:10181;Parent=Msa1188600-mRNA-1
chr8_1 exon 28937793 28937839 28937793 ID=Msa1188600-mRNA-1:exon:10180;Parent=Msa1188600-mRNA-1
chr8_1 exon 28937943 28937980 28937943 ID=Msa1188600-mRNA-1:exon:10179;Parent=Msa1188600-mRNA-1
chr8_1 exon 28938097 28938312 28938097 ID=Msa1188600-mRNA-1:exon:10178;Parent=Msa1188600-mRNA-1
chr8_1 exon 28938558 28938680 28938558 ID=Msa1188600-mRNA-1:exon:10177;Parent=Msa1188600-mRNA-1
chr8_1 exon 28938775 28938834 28938775 ID=Msa1188600-mRNA-1:exon:10176;Parent=Msa1188600-mRNA-1
chr8_1 exon 28940173 28940411 28940173 ID=Msa1188600-mRNA-1:exon:10175;Parent=Msa1188600-mRNA-1
chr8_1 exon 28942079 28942655 28942079 ID=Msa1188600-mRNA-1:exon:10174;Parent=Msa1188600-mRNA-1
chr8_1 five_prime_UTR 28942392 28942655 28942392 ID=Msa1188600-mRNA-1:five_prime_utr;Parent=Msa1188600-mRNA-1
chr8_1 CDS 28942079 28942391 28942079 ID=Msa1188600-mRNA-1:cds;Parent=Msa1188600-mRNA-1
chr8_1 CDS 28940173 28940411 28940173 ID=Msa1188600-mRNA-1:cds;Parent=Msa1188600-mRNA-1
chr8_1 CDS 28938775 28938834 28938775 ID=Msa1188600-mRNA-1:cds;Parent=Msa1188600-mRNA-1
chr8_1 CDS 28938558 28938680 28938558 ID=Msa1188600-mRNA-1:cds;Parent=Msa1188600-mRNA-1
chr8_1 CDS 28938097 28938312 28938097 ID=Msa1188600-mRNA-1:cds;Parent=Msa1188600-mRNA-1
chr8_1 CDS 28937943 28937980 28937943 ID=Msa1188600-mRNA-1:cds;Parent=Msa1188600-mRNA-1
chr8_1 CDS 28937793 28937839 28937793 ID=Msa1188600-mRNA-1:cds;Parent=Msa1188600-mRNA-1
chr8_1 CDS 28937585 28937715 28937585 ID=Msa1188600-mRNA-1:cds;Parent=Msa1188600-mRNA-1
chr8_1 CDS 28937196 28937255 28937196 ID=Msa1188600-mRNA-1:cds;Parent=Msa1188600-mRNA-1
chr8_1 CDS 28936671 28936802 28936671 ID=Msa1188600-mRNA-1:cds;Parent=Msa1188600-mRNA-1
chr8_1 CDS 28936125 28936310 28936125 ID=Msa1188600-mRNA-1:cds;Parent=Msa1188600-mRNA-1
chr8_1 three_prime_UTR 28935851 28936124 28935851 ID=Msa1188600-mRNA-1:three_prime_utr;Parent=Msa1188600-mRNA-1
Gene Sequence

>Msa1188600

ATGGAAAACCGAATCTACACATCCTCTTACAACATCCCAACCGGAGCAGCTCCATCAACAACATCCCCGACCCAATATTACGACCCGAATACAATGTTCCTTGCTCACTATCGCCGCACCGCCGAAGCCGCCGCCGCTGCTTCCTCCATCCGTTACTCCTCCGATTTCGACATTGCTCCTCCTGGAGTTGCGTCTAGAATCTCCACCACTAATCCTTGGGCGAATGCTTTCCCCTCCGCCGCTGCCGCCGTCGCCGCTGCTGCAACGAATGTCGCCTCTGCCGCTTCACTTGATCTTAAACGCTCTTCTGATGCGCTCTACCATCCATCCATTTTGAGTACAATTGGGCAAAACGAAGCTTGGTATACGTCGAACTCACTGGCCAAGCGCCCTAGATATGAAACCGGAAGTACTTTGCCTATTTATCCTCAGAGGCCAGGAGAGAAGGATTGTGCCCACTATATGCTAACAAGAACCTGTAAATTTGGAGAGAGCTGCAAGTTCGATCATCCTATTTGGGTTCCTGCGGGTGGAATCCCAGATTGGAAAGAGGTTCCAAATATTGTTCCAAGTGAAACTCTTCCCGAGAGACCTGGAGAACCAGATTGTCCATTTTTTCTGAAAACTCAAAAATGCAAGTTTGGTACAAAGTGCAAATTTAATCATCCAAATGTTCCCTCTGAAAATGCCGATGTTTCTGGCTTACCTGAGAGGCCACAGGAGCCCCCTTGCGCGTTCTACTTGAAAACTGGAAAATGTAAATACGGTGCTGCATGCAAATTCCATCACCCCAAGGATATCCAGATTCAATTATCTGATGATTTGAGCCGTAATGTTGAGCAGACACAAACAAATTCTTCTGTGTTTGATGGGGCAATAGGAGATACACAGTCAACTATGCCTCTTATATCTCCACTGTCGCATAATAGCAAAGGGCTTCCTGTGAGACCGGGGGAAGTGGATTGTCCATTCTACATGAAAACTGGAAGTTGCAAGTTCGGTGCCAGTTGCCGCTACAATCATCCTGACATGAATGCCATTAATCCACCTGTGTCTGCATTGGGCCCTTCTGTTTTGGCGTCCTCAACTGCTAATCTTAACATTGGAGCTATTAATCCAGCTGCATCTTTTTATCAAGCTTTTGACCCCAGTCTGTCAAATCCAATGTCTCAGGTGGGAGTAACAGGGACTATCTATCCTCAGCGCCCTGGACAGATTGAATGTGATTTCTATATGAAATCTGGCATATGTAAATTTGGGGAAAGATGCAAGTACCATCACCCAATCGACCGCACAACATCACTGTCAAAACTGCAATCAAATGTTAAACTTACTGCTGCAGGGTTACCAAGAAGAGAGGGTGTTGAGATCTGTCCATATTATTTGAAAACTGCAACGTGCAAGTTTGGCGCAACATGCAAATTTGACCATCCACCACCCGGAGAAGTGATGGAGATGGCTAAGTCACAAGGAGCTTCTACAACCAATGGAGGAGAAACGGAGACCAACGAAGATGTGCCTGGTTCTGCTCCGGAACAATATTGA
Protein sequence

>Msa1188600

MENRIYTSSYNIPTGAAPSTTSPTQYYDPNTMFLAHYRRTAEAAAAASSIRYSSDFDIAPPGVASRISTTNPWANAFPSAAAAVAAAATNVASAASLDLKRSSDALYHPSILSTIGQNEAWYTSNSLAKRPRYETGSTLPIYPQRPGEKDCAHYMLTRTCKFGESCKFDHPIWVPAGGIPDWKEVPNIVPSETLPERPGEPDCPFFLKTQKCKFGTKCKFNHPNVPSENADVSGLPERPQEPPCAFYLKTGKCKYGAACKFHHPKDIQIQLSDDLSRNVEQTQTNSSVFDGAIGDTQSTMPLISPLSHNSKGLPVRPGEVDCPFYMKTGSCKFGASCRYNHPDMNAINPPVSALGPSVLASSTANLNIGAINPAASFYQAFDPSLSNPMSQVGVTGTIYPQRPGQIECDFYMKSGICKFGERCKYHHPIDRTTSLSKLQSNVKLTAAGLPRREGVEICPYYLKTATCKFGATCKFDHPPPGEVMEMAKSQGASTTNGGETETNEDVPGSAPEQY*