AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1008390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1008390 MtrunA17_Chr7g0218831 85.915 355 23 1 1 328 86 440 0.0 616
Msa1008390 MtrunA17_Chr7g0218841 82.022 356 36 2 1 328 86 441 0.0 584
Msa1008390 MtrunA17_Chr7g0218811 66.384 354 92 1 1 327 96 449 9.41e-168 474
Msa1008390 MtrunA17_Chr7g0218821 64.407 354 99 1 1 327 97 450 1.02e-165 469
Msa1008390 MtrunA17_Chr7g0218791 52.809 356 136 4 1 327 92 444 2.00e-128 374
Msa1008390 MtrunA17_Chr7g0249981 29.973 377 194 14 2 325 105 464 2.95e-42 152
Msa1008390 MtrunA17_Chr5g0448551 33.818 275 167 8 1 263 89 360 3.90e-42 151
Msa1008390 MtrunA17_Chr6g0464871 29.577 355 186 9 22 325 123 464 6.86e-41 148
Msa1008390 MtrunA17_Chr3g0078841 29.067 375 204 9 7 324 105 474 7.49e-41 149
Msa1008390 MtrunA17_Chr7g0217881 30.347 346 190 9 21 324 122 458 8.29e-41 148
Msa1008390 MtrunA17_Chr4g0053501 27.937 383 208 13 5 325 86 462 4.71e-39 144
Msa1008390 MtrunA17_Chr6g0454151 28.045 353 205 8 21 324 122 474 7.43e-39 143
Msa1008390 MtrunA17_Chr6g0453951 27.606 355 206 8 21 324 169 523 1.66e-38 143
Msa1008390 MtrunA17_Chr7g0250001 27.346 373 207 11 2 324 86 444 1.76e-38 142
Msa1008390 MtrunA17_Chr6g0454341 29.132 357 199 8 21 324 119 474 2.74e-38 142
Msa1008390 MtrunA17_Chr1g0207981 26.891 357 198 10 21 324 123 469 2.85e-38 141
Msa1008390 MtrunA17_Chr4g0053321 28.032 371 200 9 12 325 117 477 5.27e-38 141
Msa1008390 MtrunA17_Chr6g0464841 28.895 353 191 9 22 325 111 452 8.00e-38 140
Msa1008390 MtrunA17_Chr6g0453961 27.701 361 199 9 21 324 131 486 1.57e-37 140
Msa1008390 MtrunA17_Chr8g0359821 33.704 270 150 7 21 263 120 387 1.87e-37 139
Msa1008390 MtrunA17_Chr6g0454121 27.747 364 194 10 21 324 121 475 4.04e-37 138
Msa1008390 MtrunA17_Chr6g0464861 28.412 359 193 10 18 325 106 451 4.44e-37 138
Msa1008390 MtrunA17_Chr6g0454141 27.540 374 213 10 5 324 107 476 5.79e-37 138
Msa1008390 MtrunA17_Chr6g0454181 27.528 356 205 9 21 324 122 476 1.15e-36 137
Msa1008390 MtrunA17_Chr6g0454361 27.731 357 205 8 21 325 123 478 1.83e-36 137
Msa1008390 MtrunA17_Chr6g0454131 27.198 364 196 9 21 324 121 475 2.79e-36 136
Msa1008390 MtrunA17_Chr6g0454321 28.056 360 203 9 21 326 119 476 3.03e-36 138
Msa1008390 MtrunA17_Chr6g0454261 26.966 356 207 7 21 324 122 476 3.84e-36 135
Msa1008390 MtrunA17_Chr6g0464921 28.457 376 202 12 2 325 93 453 4.62e-36 135
Msa1008390 MtrunA17_Chr5g0414321 28.409 352 195 11 21 324 106 448 1.52e-35 134
Msa1008390 MtrunA17_Chr6g0454221 34.222 225 109 4 139 324 3 227 1.66e-35 130
Msa1008390 MtrunA17_Chr5g0414331 28.249 354 197 11 21 326 108 452 2.07e-35 133
Msa1008390 MtrunA17_Chr6g0454301 27.731 357 204 8 21 324 372 727 2.21e-35 135
Msa1008390 MtrunA17_Chr6g0454301 31.696 224 122 4 132 324 3 226 2.18e-28 115
Msa1008390 MtrunA17_Chr6g0452771 28.134 359 199 10 21 324 122 476 2.66e-35 133
Msa1008390 MtrunA17_Chr3g0118691 28.042 378 210 9 5 324 106 479 3.09e-35 133
Msa1008390 MtrunA17_Chr6g0454401 27.500 360 200 8 21 324 123 477 5.14e-35 132
Msa1008390 MtrunA17_Chr5g0423981 33.471 242 119 5 125 324 200 441 7.41e-35 132
Msa1008390 MtrunA17_Chr3g0118661 27.249 378 212 11 5 324 104 476 8.60e-35 132
Msa1008390 MtrunA17_Chr6g0454191 27.171 357 207 9 20 324 122 477 1.27e-34 132
Msa1008390 MtrunA17_Chr8g0336651 27.749 382 214 10 5 328 868 1245 1.75e-34 134
Msa1008390 MtrunA17_Chr8g0336651 29.008 262 130 7 106 328 532 776 6.72e-27 111
Msa1008390 MtrunA17_Chr8g0336651 27.394 376 187 11 5 323 93 439 8.34e-27 111
Msa1008390 MtrunA17_Chr8g0377921 27.671 365 195 12 21 324 104 460 2.04e-34 130
Msa1008390 MtrunA17_Chr6g0454331 27.731 357 205 9 21 325 121 476 3.86e-34 130
Msa1008390 MtrunA17_Chr8g0336331 27.123 365 196 9 21 324 118 473 5.97e-34 130
Msa1008390 MtrunA17_Chr2g0278711 29.024 379 200 12 7 325 105 474 7.52e-34 129
Msa1008390 MtrunA17_Chr5g0401721 30.872 298 151 11 81 325 173 468 9.08e-34 129
Msa1008390 MtrunA17_Chr8g0336691 27.368 380 216 10 5 328 1006 1381 2.67e-33 130
Msa1008390 MtrunA17_Chr8g0336691 26.546 388 209 9 5 328 100 475 2.82e-31 124
Msa1008390 MtrunA17_Chr8g0336691 27.200 375 195 11 5 328 567 914 7.97e-28 114
Msa1008390 MtrunA17_Chr5g0426431 32.423 293 165 6 3 266 102 390 7.49e-33 127
Msa1008390 MtrunA17_Chr6g0464881 26.016 369 213 10 5 325 96 452 8.46e-33 126
Msa1008390 MtrunA17_Chr7g0275511 26.316 380 220 11 5 328 102 477 9.46e-33 126
Msa1008390 MtrunA17_Chr7g0249931 28.333 360 207 13 2 328 122 463 1.36e-32 126
Msa1008390 MtrunA17_Chr6g0454291 25.915 355 212 8 21 324 119 473 1.44e-32 126
Msa1008390 MtrunA17_Chr6g0454271 31.600 250 119 8 122 324 39 283 1.80e-32 122
Msa1008390 MtrunA17_Chr3g0118701 27.249 378 213 9 5 324 106 479 1.93e-32 125
Msa1008390 MtrunA17_Chr7g0232401 27.507 349 194 12 29 323 120 463 2.97e-32 125
Msa1008390 MtrunA17_Chr6g0454201 32.589 224 120 4 132 324 254 477 8.53e-32 124
Msa1008390 MtrunA17_Chr1g0153451 26.615 387 207 10 5 328 93 465 8.98e-32 124
Msa1008390 MtrunA17_Chr5g0412111 32.353 272 155 6 17 263 105 372 1.08e-31 123
Msa1008390 MtrunA17_Chr6g0454211 25.352 355 214 8 21 324 409 763 1.50e-31 125
Msa1008390 MtrunA17_Chr6g0454211 36.184 152 56 4 125 263 105 228 2.20e-21 95.1
Msa1008390 MtrunA17_Chr8g0380531 26.287 369 214 10 5 325 97 455 1.81e-31 122
Msa1008390 MtrunA17_Chr6g0459311 27.401 354 201 9 5 307 100 448 2.45e-31 122
Msa1008390 MtrunA17_Chr8g0335161 28.375 363 187 12 5 306 92 442 5.76e-31 121
Msa1008390 MtrunA17_Chr3g0118671 27.778 378 209 11 7 325 99 471 6.25e-31 121
Msa1008390 MtrunA17_Chr3g0112771 27.119 354 203 11 18 325 105 449 7.13e-31 121
Msa1008390 MtrunA17_Chr3g0092641 31.469 286 171 6 3 263 102 387 8.26e-31 121
Msa1008390 MtrunA17_Chr7g0249961 34.188 234 102 9 137 325 31 257 8.77e-31 117
Msa1008390 MtrunA17_Chr3g0098111 30.973 226 112 8 143 324 241 466 1.66e-30 120
Msa1008390 MtrunA17_Chr8g0334851 30.000 290 162 10 5 263 96 375 3.10e-30 119
Msa1008390 MtrunA17_Chr7g0232411 25.532 376 220 11 5 325 93 463 4.06e-30 119
Msa1008390 MtrunA17_Chr5g0393591 26.765 340 211 11 5 324 111 432 4.16e-30 119
Msa1008390 MtrunA17_Chr8g0373301 26.503 366 191 14 21 323 112 462 6.22e-30 118
Msa1008390 MtrunA17_Chr3g0118711 25.926 378 218 10 5 324 104 477 1.66e-29 117
Msa1008390 MtrunA17_Chr1g0207951 27.198 364 199 13 13 324 218 567 1.76e-29 119
Msa1008390 MtrunA17_Chr1g0207951 27.324 355 194 13 21 324 764 1105 2.87e-28 115
Msa1008390 MtrunA17_Chr8g0339461 28.108 370 187 15 21 323 110 467 1.76e-29 117
Msa1008390 MtrunA17_Chr7g0232391 26.316 380 219 11 5 328 93 467 2.28e-29 117
Msa1008390 MtrunA17_Chr8g0347281 26.203 374 207 13 5 320 103 465 3.41e-29 116
Msa1008390 MtrunA17_Chr8g0339441 29.395 347 157 14 44 323 100 425 6.92e-29 115
Msa1008390 MtrunA17_Chr8g0334861 32.721 272 140 10 23 262 108 368 7.63e-29 115
Msa1008390 MtrunA17_Chr8g0336731 30.796 289 157 9 5 262 119 395 9.57e-29 115
Msa1008390 MtrunA17_Chr6g0454251 28.364 275 171 6 21 269 119 393 1.04e-28 114
Msa1008390 MtrunA17_Chr6g0462521 31.944 216 105 6 138 316 229 439 2.44e-28 114
Msa1008390 MtrunA17_Chr8g0365811 26.997 363 197 14 21 324 601 954 2.93e-28 115
Msa1008390 MtrunA17_Chr8g0365811 30.282 284 170 10 5 265 103 381 1.93e-26 110
Msa1008390 MtrunA17_Chr1g0161351 27.321 377 208 14 3 324 129 494 3.50e-28 114
Msa1008390 MtrunA17_Chr3g0118771 26.330 376 215 10 7 324 114 485 3.97e-28 114
Msa1008390 MtrunA17_Chr1g0207971 26.316 361 207 12 13 324 100 450 4.25e-28 113
Msa1008390 MtrunA17_Chr8g0339451 27.869 366 193 13 21 323 102 459 5.04e-28 113
Msa1008390 MtrunA17_Chr3g0121991 26.902 368 201 11 21 324 179 542 5.23e-28 114
Msa1008390 MtrunA17_Chr8g0347271 25.916 382 198 14 5 320 104 466 5.48e-28 113
Msa1008390 MtrunA17_Chr7g0232331 26.989 352 202 9 5 305 93 440 6.74e-28 113
Msa1008390 MtrunA17_Chr8g0377941 27.247 356 197 12 21 324 113 458 8.46e-28 112
Msa1008390 MtrunA17_Chr5g0426401 39.041 146 84 2 126 266 78 223 1.42e-27 109
Msa1008390 MtrunA17_Chr6g0486251 33.333 213 96 7 139 308 233 442 1.75e-27 111
Msa1008390 MtrunA17_Chr6g0486201 33.333 213 96 7 139 308 233 442 1.75e-27 111
Msa1008390 MtrunA17_Chr1g0207931 30.531 226 113 8 143 324 269 494 1.91e-27 112
Msa1008390 MtrunA17_Chr7g0243681 27.177 379 206 13 8 324 106 476 2.65e-27 111
Msa1008390 MtrunA17_Chr8g0339631 27.671 365 192 13 21 323 110 464 3.73e-27 110
Msa1008390 MtrunA17_Chr4g0050341 24.457 368 206 8 21 324 128 487 7.15e-27 110
Msa1008390 MtrunA17_Chr6g0462551 26.346 353 197 12 25 323 117 460 8.55e-27 110
Msa1008390 MtrunA17_Chr3g0112761 28.490 351 197 13 21 324 103 446 9.64e-27 109
Msa1008390 MtrunA17_Chr5g0412131 26.536 358 215 11 17 326 111 468 1.01e-26 109
Msa1008390 MtrunA17_Chr6g0462531 31.532 222 110 6 139 323 244 460 1.41e-26 109
Msa1008390 MtrunA17_Chr7g0243631 27.487 382 206 13 8 324 108 483 1.60e-26 109
Msa1008390 MtrunA17_Chr8g0335141 26.536 358 202 10 5 307 94 445 1.67e-26 108
Msa1008390 MtrunA17_Chr6g0462541 26.374 364 206 13 12 323 106 459 2.02e-26 108
Msa1008390 MtrunA17_Chr6g0462571 24.719 356 205 10 21 323 112 457 2.57e-26 108
Msa1008390 MtrunA17_Chr8g0336741 29.655 290 159 8 5 262 100 376 2.73e-26 108
Msa1008390 MtrunA17_Chr6g0454351 24.225 355 201 9 21 324 124 461 2.76e-26 108
Msa1008390 MtrunA17_Chr7g0232341 26.389 360 194 9 5 305 93 440 3.06e-26 108
Msa1008390 MtrunA17_Chr4g0032331 29.730 259 160 9 21 263 109 361 5.46e-26 107
Msa1008390 MtrunA17_Chr3g0118721 31.373 204 102 5 155 324 87 286 1.12e-25 103
Msa1008390 MtrunA17_Chr7g0243871 27.005 374 208 12 8 324 104 469 1.30e-25 106
Msa1008390 MtrunA17_Chr6g0454171 29.832 238 110 6 125 324 88 306 1.66e-25 103
Msa1008390 MtrunA17_Chr7g0275681 30.996 271 153 11 22 269 123 382 1.87e-25 106
Msa1008390 MtrunA17_Chr5g0403641 31.452 248 104 9 123 308 237 480 2.22e-25 106
Msa1008390 MtrunA17_Chr6g0449931 31.760 233 108 7 139 323 234 463 2.81e-25 105
Msa1008390 MtrunA17_Chr1g0153461 31.604 212 98 7 164 328 3 214 2.84e-25 101
Msa1008390 MtrunA17_Chr1g0207861 30.182 275 158 10 13 263 108 372 3.55e-25 105
Msa1008390 MtrunA17_Chr8g0339601 35.025 197 80 7 144 293 99 294 3.68e-25 103
Msa1008390 MtrunA17_Chr1g0207831 26.596 376 207 16 3 324 100 460 6.95e-25 104
Msa1008390 MtrunA17_Chr5g0431441 25.989 354 201 10 22 324 119 462 2.25e-24 103
Msa1008390 MtrunA17_Chr4g0060511 26.146 371 197 15 22 324 123 484 4.07e-24 102
Msa1008390 MtrunA17_Chr3g0122001 25.266 376 197 14 21 324 586 949 5.30e-24 102
Msa1008390 MtrunA17_Chr3g0122001 25.464 377 196 15 21 324 106 470 3.46e-22 97.4
Msa1008390 MtrunA17_Chr7g0232311 24.928 349 198 12 33 325 121 461 9.10e-24 101
Msa1008390 MtrunA17_Chr4g0044511 36.216 185 92 9 102 263 223 404 1.33e-23 101
Msa1008390 MtrunA17_Chr4g0044521 25.199 377 216 14 8 324 93 463 1.69e-23 100
Msa1008390 MtrunA17_Chr5g0412101 26.171 363 211 9 17 326 111 469 2.37e-23 100
Msa1008390 MtrunA17_Chr5g0419761 29.478 268 155 10 22 263 120 379 4.52e-23 99.4
Msa1008390 MtrunA17_Chr7g0232351 34.973 183 88 7 106 262 192 369 2.28e-22 96.3
Msa1008390 MtrunA17_Chr3g0118751 26.075 372 192 11 7 324 99 441 2.80e-22 97.1
Msa1008390 MtrunA17_Chr5g0440421 26.287 369 197 15 23 324 130 490 3.12e-22 97.1
Msa1008390 MtrunA17_Chr4g0072761 29.255 188 105 4 164 324 263 449 3.13e-22 96.7
Msa1008390 MtrunA17_Chr4g0044481 27.413 259 143 8 22 263 136 366 3.50e-22 96.3
Msa1008390 MtrunA17_Chr7g0243771 26.509 381 207 13 8 324 101 472 4.11e-22 96.7
Msa1008390 MtrunA17_Chr7g0265141 26.509 381 194 14 17 324 115 482 6.23e-22 96.3
Msa1008390 MtrunA17_Chr7g0243801 26.509 381 207 13 8 324 102 473 1.28e-21 95.1
Msa1008390 MtrunA17_Chr7g0265111 27.197 239 116 7 144 324 274 512 3.72e-21 94.0
Msa1008390 MtrunA17_Chr8g0370941 33.514 185 81 5 111 265 220 392 4.23e-21 94.0
Msa1008390 MtrunA17_Chr7g0243761 34.463 177 99 7 165 324 275 451 5.22e-21 93.2
Msa1008390 MtrunA17_Chr2g0329111 23.770 366 213 11 23 327 119 479 6.31e-21 93.2
Msa1008390 MtrunA17_Chr1g0173121 26.778 239 116 5 138 325 230 460 9.51e-21 92.4
Msa1008390 MtrunA17_Chr8g0361371 26.821 302 154 12 5 263 94 371 1.09e-20 92.4
Msa1008390 MtrunA17_Chr7g0235051 31.188 202 93 6 165 320 245 446 1.10e-20 92.4
Msa1008390 MtrunA17_Chr7g0243931 30.144 209 100 6 162 324 279 487 1.11e-20 92.4
Msa1008390 MtrunA17_Chr6g0453981 30.097 206 120 6 30 212 1 205 1.30e-20 89.0
Msa1008390 MtrunA17_Chr2g0307961 21.552 348 216 7 24 321 122 462 1.61e-20 92.0
Msa1008390 MtrunA17_Chr8g0366391 29.562 274 148 13 22 263 118 378 1.75e-20 92.0
Msa1008390 MtrunA17_Chr7g0265151 39.024 123 69 3 147 263 255 377 3.30e-20 91.3
Msa1008390 MtrunA17_Chr7g0250021 28.571 252 145 8 2 234 94 329 3.66e-20 89.4
Msa1008390 MtrunA17_Chr5g0442581 26.160 237 121 6 143 326 240 475 5.99e-20 90.5
Msa1008390 MtrunA17_Chr4g0014061 26.457 223 116 6 150 326 251 471 6.21e-20 90.1
Msa1008390 MtrunA17_Chr7g0243951 30.332 211 100 7 160 324 271 480 7.46e-20 90.1
Msa1008390 MtrunA17_Chr7g0243711 29.612 206 99 6 165 324 108 313 1.16e-19 88.2
Msa1008390 MtrunA17_Chr5g0442491 22.102 371 222 9 18 326 108 473 1.20e-19 89.4
Msa1008390 MtrunA17_Chr7g0241781 45.098 102 52 3 163 263 239 337 1.21e-19 89.0
Msa1008390 MtrunA17_Chr1g0159551 34.351 131 73 2 143 262 234 362 1.45e-19 89.0
Msa1008390 MtrunA17_Chr7g0241801 44.118 102 53 3 163 263 239 337 1.54e-19 89.0
Msa1008390 MtrunA17_Chr3g0079731 28.511 235 118 8 139 324 244 477 1.94e-19 89.0
Msa1008390 MtrunA17_Chr3g0106231 23.315 356 204 11 21 324 110 448 1.97e-19 88.6
Msa1008390 MtrunA17_Chr5g0448521 24.820 278 170 8 16 262 97 366 2.00e-19 88.6
Msa1008390 MtrunA17_Chr7g0243611 31.461 178 100 6 106 263 65 240 2.63e-19 86.7
Msa1008390 MtrunA17_Chr4g0011051 27.881 269 160 10 22 263 121 382 2.65e-19 88.6
Msa1008390 MtrunA17_Chr7g0265101 28.054 221 111 6 150 324 265 483 3.05e-19 88.2
Msa1008390 MtrunA17_Chr4g0072771 27.442 215 118 6 141 324 255 462 3.21e-19 88.2
Msa1008390 MtrunA17_Chr8g0382021 30.455 220 111 7 74 265 189 394 3.40e-19 88.2
Msa1008390 MtrunA17_Chr7g0243781 29.717 212 101 6 161 324 261 472 3.67e-19 87.8
Msa1008390 MtrunA17_Chr5g0419771 28.230 209 101 5 165 324 301 509 4.55e-19 87.8
Msa1008390 MtrunA17_Chr4g0044501 25.627 359 206 14 22 324 119 472 4.68e-19 87.8
Msa1008390 MtrunA17_Chr5g0442541 25.210 238 126 6 140 326 228 464 8.12e-19 87.0
Msa1008390 MtrunA17_Chr7g0265041 27.757 263 164 8 22 263 125 382 8.80e-19 87.0
Msa1008390 MtrunA17_Chr4g0066261 28.169 213 100 7 164 324 267 478 9.37e-19 86.7
Msa1008390 MtrunA17_Chr8g0367221 29.412 255 150 10 32 263 126 373 9.57e-19 87.4
Msa1008390 MtrunA17_Chr8g0367221 29.907 214 118 8 77 263 952 1160 2.41e-18 86.3
Msa1008390 MtrunA17_Chr8g0367221 36.842 152 85 5 123 263 1499 1650 6.54e-18 85.1
Msa1008390 MtrunA17_Chr7g0243811 31.977 172 98 6 105 262 177 343 9.87e-19 86.3
Msa1008390 MtrunA17_Chr7g0243851 29.858 211 102 6 160 324 229 439 1.17e-18 86.3
Msa1008390 MtrunA17_Chr3g0106251 24.296 284 152 7 87 324 24 290 1.38e-18 84.7
Msa1008390 MtrunA17_Chr5g0442511 34.783 138 68 5 143 262 259 392 1.89e-18 85.9
Msa1008390 MtrunA17_Chr8g0334831 25.817 306 160 11 5 263 93 378 2.27e-18 85.5
Msa1008390 MtrunA17_Chr7g0265051 25.424 295 150 8 94 324 193 481 2.35e-18 85.5
Msa1008390 MtrunA17_Chr6g0463891 26.766 269 160 9 21 262 121 379 2.50e-18 85.5
Msa1008390 MtrunA17_Chr7g0243911 30.159 189 89 5 160 305 17 205 2.65e-18 82.4
Msa1008390 MtrunA17_Chr5g0442601 22.493 369 217 11 21 326 512 874 2.68e-18 85.9
Msa1008390 MtrunA17_Chr5g0442601 32.609 138 75 3 143 263 166 302 1.87e-15 77.4
Msa1008390 MtrunA17_Chr7g0218311 26.754 228 116 7 148 324 253 480 3.29e-18 85.1
Msa1008390 MtrunA17_Chr2g0294941 26.908 249 125 8 124 322 123 364 3.45e-18 84.3
Msa1008390 MtrunA17_Chr2g0294931 28.910 211 99 7 165 324 268 478 4.65e-18 84.7
Msa1008390 MtrunA17_Chr8g0355011 23.099 342 196 8 21 324 46 358 5.17e-18 84.0
Msa1008390 MtrunA17_Chr4g0066221 28.972 214 98 9 164 324 265 477 9.36e-18 84.0
Msa1008390 MtrunA17_Chr4g0040711 28.571 203 103 6 143 308 242 439 1.12e-17 83.6
Msa1008390 MtrunA17_Chr5g0432731 26.154 260 131 7 116 325 46 294 1.36e-17 81.6
Msa1008390 MtrunA17_Chr5g0442521 30.496 141 79 3 139 262 236 374 1.42e-17 83.2
Msa1008390 MtrunA17_Chr1g0179901 26.667 210 105 4 165 325 282 491 1.55e-17 83.2
Msa1008390 MtrunA17_Chr5g0429681 36.686 169 84 7 114 262 240 405 1.67e-17 83.2
Msa1008390 MtrunA17_Chr4g0066201 25.070 359 206 14 22 324 120 471 1.70e-17 83.2
Msa1008390 MtrunA17_Chr5g0429711 26.796 362 197 15 17 324 111 458 1.77e-17 82.8
Msa1008390 MtrunA17_Chr5g0442561 25.316 237 121 8 143 326 238 471 1.92e-17 82.8
Msa1008390 MtrunA17_Chr8g0374971 27.230 213 103 6 164 324 265 477 2.10e-17 82.8
Msa1008390 MtrunA17_Chr8g0374901 27.230 213 103 7 164 324 263 475 2.45e-17 82.4
Msa1008390 MtrunA17_Chr7g0243861 37.273 110 63 2 160 263 274 383 2.85e-17 82.4
Msa1008390 MtrunA17_Chr4g0066281 27.619 210 102 6 164 324 255 463 3.27e-17 82.0
Msa1008390 MtrunA17_Chr5g0409591 28.646 192 89 6 151 296 263 452 4.80e-17 81.6
Msa1008390 MtrunA17_Chr4g0066151 38.053 113 56 4 164 263 264 375 1.09e-16 80.5
Msa1008390 MtrunA17_Chr5g0431401 26.667 255 160 7 21 263 109 348 1.29e-16 80.1
Msa1008390 MtrunA17_Chr8g0374941 27.570 214 101 9 164 324 1202 1414 1.33e-16 80.9
Msa1008390 MtrunA17_Chr8g0374941 27.885 208 94 8 164 322 264 464 2.88e-16 80.1
Msa1008390 MtrunA17_Chr8g0374941 28.492 179 80 6 164 294 729 907 1.29e-13 72.0
Msa1008390 MtrunA17_Chr5g0416741 26.829 287 179 10 2 262 98 379 1.75e-16 80.1
Msa1008390 MtrunA17_Chr2g0302991 30.303 165 87 5 123 263 207 367 1.88e-16 79.7
Msa1008390 MtrunA17_Chr8g0374931 23.626 364 214 13 22 324 118 478 2.16e-16 79.7
Msa1008390 MtrunA17_Chr5g0420801 28.016 257 164 10 23 263 115 366 2.28e-16 79.7
Msa1008390 MtrunA17_Chr4g0066171 28.230 209 100 7 165 324 266 473 2.57e-16 79.3
Msa1008390 MtrunA17_Chr6g0454371 28.655 171 85 5 187 324 1 167 3.41e-16 75.5
Msa1008390 MtrunA17_Chr2g0294921 23.626 364 214 12 22 324 267 627 3.96e-16 79.3
Msa1008390 MtrunA17_Chr2g0302961 27.354 223 122 8 123 309 210 428 4.16e-16 79.0
Msa1008390 MtrunA17_Chr5g0431431 29.412 238 146 7 74 296 105 335 4.82e-16 78.2
Msa1008390 MtrunA17_Chr8g0369341 35.507 138 78 6 135 263 241 376 6.35e-16 78.2
Msa1008390 MtrunA17_Chr4g0042931 24.771 327 178 10 42 328 167 465 1.17e-15 77.4
Msa1008390 MtrunA17_Chr5g0416821 24.185 368 225 12 5 324 109 470 1.17e-15 77.4
Msa1008390 MtrunA17_Chr5g0431371 23.647 351 209 9 21 325 109 446 1.19e-15 77.4
Msa1008390 MtrunA17_Chr8g0350881 27.700 213 102 6 164 324 265 477 1.21e-15 77.4
Msa1008390 MtrunA17_Chr4g0040691 24.928 345 198 13 16 308 104 439 1.38e-15 77.4
Msa1008390 MtrunA17_Chr4g0066131 26.047 215 107 8 164 326 259 473 1.64e-15 77.0
Msa1008390 MtrunA17_Chr6g0463861 25.581 215 104 8 164 324 258 470 1.67e-15 77.0
Msa1008390 MtrunA17_Chr2g0278721 44.118 102 47 3 167 262 785 882 1.78e-15 77.4
Msa1008390 MtrunA17_Chr2g0278721 36.735 98 60 1 167 262 274 371 8.11e-12 66.2
Msa1008390 MtrunA17_Chr5g0401851 25.000 288 177 10 1 262 105 379 2.49e-15 76.6
Msa1008390 MtrunA17_Chr5g0428081 27.354 223 109 9 153 324 256 476 3.24e-15 76.3
Msa1008390 MtrunA17_Chr5g0431421 24.363 353 204 10 21 325 109 446 4.37e-15 75.9
Msa1008390 MtrunA17_Chr5g0410941 37.273 110 58 3 165 263 276 385 8.27e-15 75.1
Msa1008390 MtrunA17_Chr8g0361411 25.926 270 163 11 22 263 102 362 8.84e-15 74.7
Msa1008390 MtrunA17_Chr8g0336261 43.038 79 42 1 187 262 1 79 9.67e-15 70.5
Msa1008390 MtrunA17_Chr1g0165701 37.288 118 66 4 160 270 272 388 1.92e-14 73.9
Msa1008390 MtrunA17_Chr5g0431361 25.185 270 143 8 107 325 190 451 2.32e-14 73.6
Msa1008390 MtrunA17_Chr8g0336251 25.941 239 125 7 113 304 206 439 2.56e-14 73.6
Msa1008390 MtrunA17_Chr2g0283041 28.395 162 83 5 165 293 256 417 2.86e-14 73.2
Msa1008390 MtrunA17_Chr4g0069611 32.484 157 91 5 119 262 212 366 3.70e-14 72.8
Msa1008390 MtrunA17_Chr6g0463851 23.474 213 111 5 164 324 267 479 5.03e-14 72.8
Msa1008390 MtrunA17_Chr7g0231631 28.947 190 105 7 165 324 67 256 6.70e-14 70.9
Msa1008390 MtrunA17_Chr8g0336321 25.941 239 125 7 113 304 206 439 7.09e-14 72.0
Msa1008390 MtrunA17_Chr2g0321331 33.088 136 75 5 175 294 94 229 9.61e-14 70.5
Msa1008390 MtrunA17_Chr4g0042891 32.090 134 82 2 139 263 239 372 1.01e-13 71.6
Msa1008390 MtrunA17_Chr6g0453941 51.724 58 28 0 155 212 201 258 1.01e-13 70.5
Msa1008390 MtrunA17_Chr3g0092031 36.735 98 60 1 167 262 6 103 1.46e-13 68.6
Msa1008390 MtrunA17_Chr6g0464091 41.000 100 53 3 167 262 279 376 1.56e-13 71.2
Msa1008390 MtrunA17_Chr8g0355221 36.364 110 63 3 160 262 273 382 2.26e-13 70.9
Msa1008390 MtrunA17_Chr4g0029131 29.878 164 79 6 167 294 257 420 3.96e-13 70.1
Msa1008390 MtrunA17_Chr4g0029151 29.878 164 79 6 167 294 265 428 1.11e-12 68.6
Msa1008390 MtrunA17_Chr6g0482061 29.577 213 113 8 98 291 219 413 1.37e-12 68.2
Msa1008390 MtrunA17_Chr1g0207881 29.365 126 57 4 231 324 256 381 1.56e-12 67.8
Msa1008390 MtrunA17_Chr2g0278741 37.755 98 59 1 167 262 356 453 1.80e-12 68.2
Msa1008390 MtrunA17_Chr4g0039881 36.735 98 60 1 167 262 246 343 2.29e-12 67.4
Msa1008390 MtrunA17_Chr6g0454111 38.824 85 50 1 125 207 99 183 3.32e-12 64.3
Msa1008390 MtrunA17_Chr6g0466841 34.694 98 62 1 167 262 272 369 6.19e-12 66.2
Msa1008390 MtrunA17_Chr1g0196851 28.070 171 86 7 160 294 291 460 9.32e-12 65.9
Msa1008390 MtrunA17_Chr8g0357361 36.275 102 61 2 164 262 117 217 1.05e-11 64.3
Msa1008390 MtrunA17_Chr2g0302851 35.714 98 61 1 167 262 270 367 1.12e-11 65.5
Msa1008390 MtrunA17_Chr2g0319761 31.288 163 78 5 166 294 258 420 2.84e-11 64.3
Msa1008390 MtrunA17_Chr8g0334841 44.048 84 44 2 139 222 64 144 4.69e-11 60.8
Msa1008390 MtrunA17_Chr2g0319791 28.788 198 102 6 165 323 257 454 6.37e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1008390 AT3G02100.1 35.792 366 187 7 1 326 101 458 4.66e-73 233
Msa1008390 AT1G05675.1 29.380 371 205 9 4 325 88 450 5.69e-42 151
Msa1008390 AT1G05680.1 28.726 369 208 8 5 325 89 450 3.23e-40 147
Msa1008390 AT3G46670.1 27.887 355 206 9 15 326 100 447 1.16e-37 140
Msa1008390 AT3G22250.1 29.078 282 152 9 21 263 103 375 4.56e-37 138
Msa1008390 AT1G22360.1 29.459 370 201 9 7 320 103 468 4.96e-37 139
Msa1008390 AT3G46660.1 26.966 356 209 9 15 326 106 454 7.35e-37 137
Msa1008390 AT1G22360.2 32.990 291 160 7 7 266 103 389 9.80e-37 137
Msa1008390 AT3G21560.1 26.891 357 199 10 21 324 122 469 4.59e-35 133
Msa1008390 AT2G23260.1 26.933 375 220 10 2 325 80 451 9.66e-35 132
Msa1008390 AT1G22370.2 30.851 282 173 6 7 266 106 387 9.08e-34 129
Msa1008390 AT3G55710.1 29.810 369 198 13 6 325 96 452 1.46e-33 129
Msa1008390 AT5G59590.1 26.571 350 206 12 18 324 105 446 3.31e-33 127
Msa1008390 AT1G22400.1 31.469 286 164 7 7 262 106 389 8.52e-33 127
Msa1008390 AT2G43840.2 26.389 360 200 10 16 325 100 444 8.65e-33 126
Msa1008390 AT1G22340.1 31.159 276 158 8 21 266 120 393 8.95e-33 127
Msa1008390 AT5G59580.1 32.184 261 152 8 19 262 104 356 2.35e-32 125
Msa1008390 AT4G15500.1 26.761 355 202 12 21 324 112 459 2.72e-32 125
Msa1008390 AT3G55700.1 29.915 351 188 15 21 325 110 448 3.52e-32 125
Msa1008390 AT3G46680.1 26.571 350 212 10 15 324 102 446 3.62e-32 125
Msa1008390 AT2G43840.1 26.389 360 200 10 16 325 100 444 4.13e-32 124
Msa1008390 AT4G15490.1 26.761 355 203 13 21 324 115 463 1.15e-31 124
Msa1008390 AT2G31750.1 34.536 194 94 3 164 325 260 452 1.28e-31 123
Msa1008390 AT2G31750.2 34.536 194 94 3 164 325 260 452 1.47e-31 124
Msa1008390 AT1G22380.1 31.365 271 155 6 21 262 120 388 1.59e-31 123
Msa1008390 AT2G23250.1 30.894 246 130 6 120 325 188 433 2.49e-31 122
Msa1008390 AT4G15550.1 26.064 376 208 11 5 324 109 470 2.88e-31 122
Msa1008390 AT3G46720.1 27.089 347 211 9 15 326 100 439 3.21e-30 119
Msa1008390 AT1G22370.1 39.869 153 78 3 128 266 65 217 1.26e-29 115
Msa1008390 AT4G15480.1 26.146 371 214 14 4 324 115 475 1.99e-29 117
Msa1008390 AT3G46700.1 26.087 345 213 10 19 324 100 441 2.06e-29 117
Msa1008390 AT2G15480.1 27.273 363 200 11 22 328 127 481 4.32e-29 117
Msa1008390 AT2G43820.1 27.855 359 192 13 18 325 102 444 5.99e-29 116
Msa1008390 AT3G46690.1 29.963 267 161 9 14 262 100 358 1.79e-28 114
Msa1008390 AT2G15490.1 27.520 367 197 12 22 328 124 481 2.15e-28 115
Msa1008390 AT2G31790.1 25.205 365 205 10 18 325 101 454 2.32e-28 114
Msa1008390 AT2G15490.3 27.548 363 199 12 22 328 124 478 3.11e-28 114
Msa1008390 AT3G11340.1 33.500 200 98 4 160 326 246 443 3.21e-28 114
Msa1008390 AT1G78270.1 32.482 274 150 9 21 263 120 389 3.29e-28 114
Msa1008390 AT5G38010.1 27.324 355 198 14 18 324 108 450 3.96e-28 114
Msa1008390 AT5G38040.1 26.243 362 199 14 15 324 101 446 5.43e-28 113
Msa1008390 AT4G01070.1 25.862 348 183 9 19 305 109 442 9.47e-28 113
Msa1008390 AT1G05560.1 26.111 360 202 12 16 324 102 448 2.03e-27 112
Msa1008390 AT5G05880.1 31.489 235 124 6 123 326 219 447 2.15e-27 111
Msa1008390 AT1G05560.2 26.741 359 201 12 16 324 152 498 2.54e-27 112
Msa1008390 AT3G16520.3 24.798 371 222 12 6 327 98 460 2.98e-27 111
Msa1008390 AT2G15480.2 26.005 373 202 11 22 328 127 491 4.40e-27 111
Msa1008390 AT1G01420.1 26.816 358 205 10 6 311 95 447 1.36e-26 109
Msa1008390 AT5G37950.1 30.000 270 157 9 15 263 77 335 1.52e-26 107
Msa1008390 AT1G01420.2 26.816 358 205 10 6 311 98 450 1.53e-26 109
Msa1008390 AT3G46650.1 41.600 125 68 2 143 262 217 341 2.65e-26 108
Msa1008390 AT3G16520.2 25.145 346 203 11 6 303 98 435 4.40e-26 108
Msa1008390 AT3G16520.1 25.145 346 203 11 6 303 98 435 5.53e-26 107
Msa1008390 AT5G05900.1 32.203 236 114 6 123 326 225 446 6.42e-26 107
Msa1008390 AT5G05870.1 26.124 356 203 13 18 324 107 451 7.63e-26 107
Msa1008390 AT3G50740.1 27.882 373 182 13 22 322 111 468 1.79e-25 106
Msa1008390 AT5G37950.2 29.104 268 156 8 15 263 77 329 2.20e-25 104
Msa1008390 AT4G14090.1 28.636 220 122 6 140 324 233 452 7.18e-25 104
Msa1008390 AT5G05860.1 32.812 256 135 10 31 262 114 356 1.05e-24 104
Msa1008390 AT4G34131.1 26.741 359 198 12 22 324 127 476 2.12e-24 103
Msa1008390 AT2G26480.1 26.766 269 167 7 16 263 96 355 2.94e-24 102
Msa1008390 AT2G29750.1 29.412 255 159 6 24 262 128 377 2.97e-24 103
Msa1008390 AT5G66690.1 27.320 388 200 14 1 320 87 460 3.56e-24 102
Msa1008390 AT1G01390.1 29.720 286 164 10 6 262 95 372 5.11e-24 102
Msa1008390 AT1G01390.2 29.720 286 164 10 6 262 112 389 6.29e-24 102
Msa1008390 AT4G34135.1 33.171 205 96 6 160 324 275 478 8.34e-24 102
Msa1008390 AT1G05530.1 28.571 252 129 7 123 324 201 451 1.12e-23 101
Msa1008390 AT4G34138.1 25.201 373 206 13 10 324 118 475 1.25e-23 101
Msa1008390 AT3G21800.1 28.077 260 128 8 123 324 214 472 2.25e-23 100
Msa1008390 AT3G21790.1 27.046 281 178 8 7 263 100 377 2.55e-23 100
Msa1008390 AT3G53160.1 29.412 221 107 7 151 324 261 479 3.13e-23 100
Msa1008390 AT5G49690.1 28.788 264 146 8 24 263 116 361 3.24e-23 100
Msa1008390 AT5G26310.1 25.445 393 205 13 1 322 87 462 4.22e-23 99.8
Msa1008390 AT3G21780.1 27.652 264 161 8 25 263 110 368 6.19e-23 99.4
Msa1008390 AT4G15280.1 25.660 265 164 8 25 263 116 373 8.06e-23 99.0
Msa1008390 AT4G15280.2 25.614 285 177 9 7 263 128 405 1.02e-22 99.0
Msa1008390 AT2G36800.1 26.632 383 197 17 7 320 113 480 1.44e-22 98.6
Msa1008390 AT2G36750.1 24.793 363 202 11 22 320 121 476 2.65e-22 97.8
Msa1008390 AT5G17050.1 23.615 343 225 7 17 324 113 453 4.02e-22 97.1
Msa1008390 AT3G21760.1 28.736 261 164 5 24 262 119 379 5.58e-22 96.7
Msa1008390 AT5G05890.1 43.966 116 60 2 153 263 247 362 6.56e-22 96.3
Msa1008390 AT3G21750.1 25.000 276 169 8 18 263 101 368 8.02e-22 96.3
Msa1008390 AT4G15260.1 25.283 265 155 9 28 262 1 252 8.25e-22 95.1
Msa1008390 AT2G36760.1 25.869 259 129 7 123 320 225 481 8.39e-22 96.3
Msa1008390 AT1G07250.1 35.948 153 85 4 123 262 223 375 1.12e-21 95.9
Msa1008390 AT3G53150.1 32.000 175 96 4 110 263 222 394 2.45e-21 94.7
Msa1008390 AT2G30150.1 30.038 263 144 9 22 263 95 338 3.01e-21 94.4
Msa1008390 AT2G30150.2 29.588 267 140 10 22 263 111 354 3.11e-21 94.4
Msa1008390 AT2G18560.1 29.437 231 112 8 143 328 150 374 5.35e-21 92.8
Msa1008390 AT2G29740.1 38.462 130 75 2 139 263 249 378 5.57e-21 93.6
Msa1008390 AT2G36780.1 26.641 259 127 8 123 320 225 481 1.59e-20 92.4
Msa1008390 AT2G36770.1 26.490 302 148 13 86 324 195 485 3.20e-20 91.7
Msa1008390 AT2G18570.1 36.029 136 70 3 143 265 240 371 3.97e-20 91.3
Msa1008390 AT5G12890.1 37.121 132 71 3 143 262 252 383 1.07e-19 90.1
Msa1008390 AT2G29710.1 27.016 248 132 8 123 324 215 459 1.24e-19 89.7
Msa1008390 AT1G24100.1 24.672 381 208 15 5 324 93 455 1.36e-19 89.7
Msa1008390 AT4G36770.1 39.130 138 61 4 143 262 237 369 1.51e-19 89.4
Msa1008390 AT5G65550.1 26.217 267 162 8 22 263 112 368 3.73e-19 88.2
Msa1008390 AT2G28080.1 26.812 276 172 13 9 262 113 380 3.98e-19 88.2
Msa1008390 AT2G30140.2 24.719 356 195 12 22 324 112 447 5.28e-19 87.8
Msa1008390 AT2G30140.1 24.501 351 203 10 22 324 112 448 6.16e-19 87.4
Msa1008390 AT2G36970.1 26.641 259 171 7 21 263 123 378 1.19e-18 87.0
Msa1008390 AT1G73880.1 25.556 360 191 11 23 324 123 463 1.45e-18 86.7
Msa1008390 AT1G07260.1 33.582 134 76 3 139 262 244 374 1.55e-18 86.7
Msa1008390 AT5G17040.2 28.646 192 110 5 140 305 122 312 1.59e-18 85.5
Msa1008390 AT5G17040.1 28.646 192 110 5 140 305 224 414 2.01e-18 85.9
Msa1008390 AT1G30530.1 22.191 356 235 7 3 323 95 443 2.37e-18 85.9
Msa1008390 AT2G29730.1 26.000 250 131 9 123 324 216 459 4.63e-18 85.1
Msa1008390 AT4G27560.1 24.595 309 175 12 29 294 116 409 4.74e-18 85.1
Msa1008390 AT1G07240.1 25.490 255 170 7 24 262 124 374 4.77e-18 85.1
Msa1008390 AT5G17030.1 27.604 192 112 4 140 305 240 430 5.70e-18 84.7
Msa1008390 AT1G50580.1 27.982 218 123 6 140 324 219 435 8.04e-18 84.3
Msa1008390 AT5G54010.1 28.421 190 95 6 140 294 226 409 1.73e-17 83.2
Msa1008390 AT2G36790.1 28.889 270 159 10 22 266 124 385 2.60e-17 82.8
Msa1008390 AT4G27570.1 24.675 308 174 12 29 293 116 408 4.13e-17 82.0
Msa1008390 AT1G10400.1 26.718 262 146 9 106 325 203 460 4.52e-17 82.0
Msa1008390 AT2G16890.2 24.820 278 152 7 95 317 181 456 2.74e-16 79.7
Msa1008390 AT5G03490.1 36.585 123 74 2 144 265 251 370 5.41e-16 79.0
Msa1008390 AT2G22930.1 26.738 187 102 6 140 294 220 403 8.60e-16 78.2
Msa1008390 AT2G16890.3 25.610 246 129 6 95 288 181 424 8.63e-16 78.2
Msa1008390 AT5G53990.1 34.815 135 66 6 140 262 220 344 2.35e-15 77.0
Msa1008390 AT3G29630.1 36.719 128 75 4 140 262 220 346 2.69e-15 76.6
Msa1008390 AT3G29630.2 38.235 102 58 3 166 262 219 320 1.15e-14 74.7
Msa1008390 AT1G64920.1 37.143 105 57 3 167 262 244 348 1.34e-14 74.7
Msa1008390 AT4G01070.2 28.378 222 126 7 19 222 109 315 2.13e-14 73.6
Msa1008390 AT1G51210.1 37.374 99 59 1 165 263 269 364 2.79e-14 73.6
Msa1008390 AT5G14860.1 26.923 234 122 7 123 317 230 453 3.09e-14 73.6
Msa1008390 AT4G09500.1 25.521 192 106 6 167 321 219 410 7.96e-14 72.4
Msa1008390 AT4G09500.2 25.521 192 106 6 167 321 244 435 8.70e-14 72.0
Msa1008390 AT5G54060.1 36.800 125 69 5 145 262 248 369 5.01e-13 70.1
Msa1008390 AT1G64910.1 35.644 101 60 3 167 262 244 344 1.21e-12 68.9
Msa1008390 AT2G22590.1 26.289 194 125 7 142 319 249 440 1.36e-12 68.6
Msa1008390 AT1G06000.1 24.910 277 149 14 102 325 161 431 5.65e-11 63.5

Find 81 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGATACAAGCTATAAATTT+TGG 0.125376 7_1:-8641232 Msa1008390:CDS
TAGAAGACTGGACTTGAATT+AGG 0.212629 7_1:-8640698 Msa1008390:CDS
CTAGGGCTAGTTCATTAAAT+TGG 0.232886 7_1:+8640996 None:intergenic
TTGGAAGTGGGACACAATTT+AGG 0.247177 7_1:-8642641 Msa1008390:CDS
TTACTTCCATGGAAATCATT+AGG 0.251367 7_1:+8640899 None:intergenic
TGGTAGGAACTTTGGTGATA+TGG 0.260975 7_1:+8641159 None:intergenic
TCGCCCAACTAATAAACTTT+TGG 0.265813 7_1:+8640525 None:intergenic
ACAACAACAAAAGTTCATTT+TGG 0.269702 7_1:-8641114 Msa1008390:CDS
GTGTCCATCATAGGTATATC+AGG 0.307459 7_1:+8641310 None:intergenic
TACTTCCATGGAAATCATTA+GGG 0.333367 7_1:+8640900 None:intergenic
ACCAGCATGTACACCTTCTA+TGG 0.357121 7_1:+8640787 None:intergenic
CTAGTTCATTAAATTGGTTT+TGG 0.358155 7_1:+8641002 None:intergenic
AAGATACAACTTGCTTAGAT+TGG 0.363758 7_1:-8641087 Msa1008390:CDS
TTAACTTCTTCTATAAGCTT+TGG 0.364725 7_1:+8642725 None:intergenic
AAGTTTGTTGTGTCCATCAT+AGG 0.368447 7_1:+8641301 None:intergenic
ATCCCATCTTCAATAAGTTT+AGG 0.371481 7_1:+8642557 None:intergenic
CCTACCAATTGGTCCATTGA+TGG 0.377369 7_1:-8641143 Msa1008390:CDS
TATGGGTTGGGCTTTGGAAG+TGG 0.378573 7_1:-8642654 Msa1008390:CDS
TCTCCAAAAGTTTATTAGTT+GGG 0.379670 7_1:-8640528 Msa1008390:CDS
TTGTTGTTACTTTCCATCAA+TGG 0.392206 7_1:+8641130 None:intergenic
CTTTGGTAGTGTGGTAGTAA+TGG 0.394763 7_1:-8641026 Msa1008390:CDS
CTTCAATAAGTTTAGGTATG+AGG 0.396512 7_1:+8642564 None:intergenic
TCTATAAGCTTTGGAAGTCT+TGG 0.402505 7_1:+8642734 None:intergenic
GTAAAGGTAAAATTGTTAGT+TGG 0.403350 7_1:-8640880 Msa1008390:CDS
ATCTCCAAAAGTTTATTAGT+TGG 0.404458 7_1:-8640529 Msa1008390:CDS
TAAAGGTAAAATTGTTAGTT+GGG 0.409569 7_1:-8640879 Msa1008390:CDS
TACAACTTGCTTAGATTGGT+TGG 0.410010 7_1:-8641083 Msa1008390:CDS
TCTGTCATATATGTTTCCTT+TGG 0.423583 7_1:-8641043 Msa1008390:CDS
ATGGGTTGGGCTTTGGAAGT+GGG 0.427695 7_1:-8642653 Msa1008390:CDS
GAATTAGGGAAAGATGATAA+TGG 0.431631 7_1:-8640683 Msa1008390:CDS
ATCTTATCTACGCCGCGCAA+TGG 0.431831 7_1:+8641277 None:intergenic
TCCAGCTTCTGCCACTACTT+TGG 0.444015 7_1:-8642597 Msa1008390:CDS
AGTTGGTGATGATGACATAA+AGG 0.450028 7_1:-8640618 Msa1008390:CDS
CTTTCCATCAATGGACCAAT+TGG 0.450743 7_1:+8641139 None:intergenic
ATAAGCTTTGGAAGTCTTGG+AGG 0.453431 7_1:+8642737 None:intergenic
AGAAGACTGGACTTGAATTA+GGG 0.454055 7_1:-8640697 Msa1008390:CDS
GGATGGAATTCTACCATAGA+AGG 0.456157 7_1:-8640800 Msa1008390:CDS
CTCCCCTGATATACCTATGA+TGG 0.458771 7_1:-8641314 Msa1008390:CDS
GGACCAATTGGTAGGAACTT+TGG 0.458930 7_1:+8641151 None:intergenic
ATACCTAAACTTATTGAAGA+TGG 0.459198 7_1:-8642560 Msa1008390:CDS
ATGATAATGGATTTATATCA+AGG 0.465504 7_1:-8640670 Msa1008390:CDS
TCACCAAAGTTCCTACCAAT+TGG 0.467404 7_1:-8641154 Msa1008390:CDS
TTTACCTTGTTGTCATTACT+AGG 0.478103 7_1:+8640932 None:intergenic
AATGATTTCCATGGAAGTAA+AGG 0.480314 7_1:-8640896 Msa1008390:CDS
TACCTAAACTTATTGAAGAT+GGG 0.486720 7_1:-8642559 Msa1008390:CDS
TGTCTAGAAGATCAAGTCCT+AGG 0.486727 7_1:+8640978 None:intergenic
ACTATTAATAATATAGAAGA+AGG 0.495893 7_1:-8640569 Msa1008390:CDS
AAGAAGGTGGATCAAGTAGT+TGG 0.501502 7_1:-8640635 Msa1008390:CDS
CTTATGAAGCAAGCAATGGC+TGG 0.514750 7_1:+8640830 None:intergenic
GCCAAAGTAGTGGCAGAAGC+TGG 0.515181 7_1:+8642596 None:intergenic
GGACGAACAACCCAAAGAAA+AGG 0.516602 7_1:+8640953 None:intergenic
CTTTGGAAGTCTTGGAGGCA+TGG 0.521064 7_1:+8642742 None:intergenic
ATATGTTTCCTTTGGTAGTG+TGG 0.521270 7_1:-8641035 Msa1008390:CDS
TAATATAGAAGAAGGTGGCC+AGG 0.522069 7_1:-8640561 Msa1008390:CDS
GGACACAATTTAGGAATCAA+AGG 0.524020 7_1:-8642632 Msa1008390:CDS
GCATACCCTAATGATTTCCA+TGG 0.524493 7_1:-8640905 Msa1008390:CDS
GACACAATTTAGGAATCAAA+GGG 0.528806 7_1:-8642631 Msa1008390:CDS
GAAACATATATGACAGATTG+AGG 0.532322 7_1:+8641049 None:intergenic
ATTTGTGATGTGTAGAAGAC+TGG 0.534736 7_1:-8640710 Msa1008390:intron
TTTGGAGATTATGTGATGCC+TGG 0.538543 7_1:+8640543 None:intergenic
GATGGGATTATTGATTCTGA+AGG 0.541173 7_1:-8642542 Msa1008390:intron
TTATATCAAGGCAAGAGATA+AGG 0.554655 7_1:-8640658 Msa1008390:CDS
GCTTCATAAGTCATTGTGGA+TGG 0.554894 7_1:-8640817 Msa1008390:CDS
GTCTAGAAGATCAAGTCCTA+GGG 0.562784 7_1:+8640979 None:intergenic
ACTGCTTATGATCTTGAGCC+TGG 0.563828 7_1:-8641190 Msa1008390:CDS
AAGGCAAGAGATAAGGAAGA+AGG 0.565891 7_1:-8640651 Msa1008390:CDS
TGTCCATCATAGGTATATCA+GGG 0.572365 7_1:+8641311 None:intergenic
TGAAGCAAGCAATGGCTGGA+TGG 0.573516 7_1:+8640834 None:intergenic
CCATCAATGGACCAATTGGT+AGG 0.574039 7_1:+8641143 None:intergenic
CAATTTAATGAACTAGCCCT+AGG 0.592472 7_1:-8640995 Msa1008390:CDS
CATTACTACCACACTACCAA+AGG 0.593338 7_1:+8641027 None:intergenic
GACAACACACGCCAAAGTAG+TGG 0.608300 7_1:+8642586 None:intergenic
ATTAATAATATAGAAGAAGG+TGG 0.620062 7_1:-8640566 Msa1008390:CDS
GGTGATATGGAAAATACACC+AGG 0.626519 7_1:+8641172 None:intergenic
ACAACAAACTTCCCATTGCG+CGG 0.626751 7_1:-8641289 Msa1008390:CDS
GCAAGAGATAAGGAAGAAGG+TGG 0.626801 7_1:-8640648 Msa1008390:CDS
GCTTGCTTCATAAGTCATTG+TGG 0.630073 7_1:-8640821 Msa1008390:CDS
ATGACTTATGAAGCAAGCAA+TGG 0.646585 7_1:+8640826 None:intergenic
TCGTCCTAGTAATGACAACA+AGG 0.682098 7_1:-8640936 Msa1008390:CDS
GTCCATCATAGGTATATCAG+GGG 0.691231 7_1:+8641312 None:intergenic
ACACAATTTAGGAATCAAAG+GGG 0.750071 7_1:-8642630 Msa1008390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTAAGAAACTAAAAT+GGG + chr7_1:8641151-8641170 None:intergenic 10.0%
!!! TTTTTTTTAAGAAACTAAAA+TGG + chr7_1:8641152-8641171 None:intergenic 10.0%
!!! AAATCAACTTTTTTTATTTT+TGG - chr7_1:8641171-8641190 Msa1008390:CDS 10.0%
!!! TTTTTTTAAGAAACTAAAAT+GGG + chr7_1:8641151-8641170 None:intergenic 10.0%
!!! TTTTTTTTAAGAAACTAAAA+TGG + chr7_1:8641152-8641171 None:intergenic 10.0%
!!! AAATCAACTTTTTTTATTTT+TGG - chr7_1:8641171-8641190 Msa1008390:CDS 10.0%
!!! TATTGTTGTTACATTTTTTA+TGG - chr7_1:8640588-8640607 Msa1008390:CDS 15.0%
!!! ATTGTTGTTACATTTTTTAT+GGG - chr7_1:8640589-8640608 Msa1008390:CDS 15.0%
!! AAGTTATTCAATAAAATTGT+AGG - chr7_1:8641437-8641456 Msa1008390:intron 15.0%
!! AAATTGTAAACCATAATATA+TGG - chr7_1:8641705-8641724 Msa1008390:intron 15.0%
!! ACTATTAATAATATAGAAGA+AGG - chr7_1:8642691-8642710 Msa1008390:CDS 15.0%
!!! TATTGTTGTTACATTTTTTA+TGG - chr7_1:8640588-8640607 Msa1008390:CDS 15.0%
!!! ATTGTTGTTACATTTTTTAT+GGG - chr7_1:8640589-8640608 Msa1008390:CDS 15.0%
!! AAGTTATTCAATAAAATTGT+AGG - chr7_1:8641437-8641456 Msa1008390:intron 15.0%
!! AAATTGTAAACCATAATATA+TGG - chr7_1:8641705-8641724 Msa1008390:intron 15.0%
!! ACTATTAATAATATAGAAGA+AGG - chr7_1:8642691-8642710 Msa1008390:CDS 15.0%
!!! AGATTTCACAATTAGTATTT+TGG - chr7_1:8640765-8640784 Msa1008390:intron 20.0%
!!! GATTTCACAATTAGTATTTT+GGG - chr7_1:8640766-8640785 Msa1008390:intron 20.0%
!! TTCAATAAAATTGTAGGAAT+AGG - chr7_1:8641443-8641462 Msa1008390:intron 20.0%
!!! GATTTGAATTTCTTGTTTTT+TGG + chr7_1:8641927-8641946 None:intergenic 20.0%
!! TAAAGGTAAAATTGTTAGTT+GGG - chr7_1:8642381-8642400 Msa1008390:intron 20.0%
!! AGAAATTGATCACTAAAAAA+TGG + chr7_1:8642517-8642536 None:intergenic 20.0%
!!! ATGATAATGGATTTATATCA+AGG - chr7_1:8642590-8642609 Msa1008390:CDS 20.0%
!! ATTAATAATATAGAAGAAGG+TGG - chr7_1:8642694-8642713 Msa1008390:CDS 20.0%
!!! AGATTTCACAATTAGTATTT+TGG - chr7_1:8640765-8640784 Msa1008390:intron 20.0%
!!! GATTTCACAATTAGTATTTT+GGG - chr7_1:8640766-8640785 Msa1008390:intron 20.0%
!! TTCAATAAAATTGTAGGAAT+AGG - chr7_1:8641443-8641462 Msa1008390:intron 20.0%
!!! GATTTGAATTTCTTGTTTTT+TGG + chr7_1:8641927-8641946 None:intergenic 20.0%
!! TAAAGGTAAAATTGTTAGTT+GGG - chr7_1:8642381-8642400 Msa1008390:intron 20.0%
!! AGAAATTGATCACTAAAAAA+TGG + chr7_1:8642517-8642536 None:intergenic 20.0%
!!! ATGATAATGGATTTATATCA+AGG - chr7_1:8642590-8642609 Msa1008390:CDS 20.0%
!! ATTAATAATATAGAAGAAGG+TGG - chr7_1:8642694-8642713 Msa1008390:CDS 20.0%
! TTAACTTCTTCTATAAGCTT+TGG + chr7_1:8640538-8640557 None:intergenic 25.0%
!!! TTGTTACATTTTTTATGGGT+TGG - chr7_1:8640593-8640612 Msa1008390:CDS 25.0%
!!! TGTTACATTTTTTATGGGTT+GGG - chr7_1:8640594-8640613 Msa1008390:CDS 25.0%
! ATACCTAAACTTATTGAAGA+TGG - chr7_1:8640700-8640719 Msa1008390:intron 25.0%
! TACCTAAACTTATTGAAGAT+GGG - chr7_1:8640701-8640720 Msa1008390:intron 25.0%
!!! GGTAATACTTTTTACTGTTT+TGG - chr7_1:8640739-8640758 Msa1008390:intron 25.0%
!!! TGAATAAGAAACTAGCTTTA+TGG + chr7_1:8640801-8640820 None:intergenic 25.0%
!!! TCTTTGTTTTGTTTGGATAT+CGG - chr7_1:8641024-8641043 Msa1008390:CDS 25.0%
! AGTCAAATAATTACAAAGGT+AGG + chr7_1:8641056-8641075 None:intergenic 25.0%
! TGTCAGTCAAATAATTACAA+AGG + chr7_1:8641060-8641079 None:intergenic 25.0%
! ATTGAATAACTTTCTACTTC+AGG + chr7_1:8641429-8641448 None:intergenic 25.0%
!!! ACAATATCTCTAAAGTAGAA+GGG + chr7_1:8641648-8641667 None:intergenic 25.0%
!!! AACAATATCTCTAAAGTAGA+AGG + chr7_1:8641649-8641668 None:intergenic 25.0%
! TTAGAGATATTGTTGTAATC+TGG - chr7_1:8641655-8641674 Msa1008390:intron 25.0%
! AAGTCATATGTATGATACTA+CGG + chr7_1:8641682-8641701 None:intergenic 25.0%
! GAAACATATTTCACAAACAA+TGG + chr7_1:8641800-8641819 None:intergenic 25.0%
! TGTAACATAATATCAAGTTC+AGG - chr7_1:8641846-8641865 Msa1008390:intron 25.0%
!!! TGAATTTCTTGTTTTTTGGT+GGG + chr7_1:8641923-8641942 None:intergenic 25.0%
!!! TTGAATTTCTTGTTTTTTGG+TGG + chr7_1:8641924-8641943 None:intergenic 25.0%
!! GAGATACAAGCTATAAATTT+TGG - chr7_1:8642028-8642047 Msa1008390:intron 25.0%
!!! AAGCTATAAATTTTGGAGAA+TGG - chr7_1:8642035-8642054 Msa1008390:intron 25.0%
!! ACAACAACAAAAGTTCATTT+TGG - chr7_1:8642146-8642165 Msa1008390:intron 25.0%
!!! CTAGTTCATTAAATTGGTTT+TGG + chr7_1:8642261-8642280 None:intergenic 25.0%
! GTAAAGGTAAAATTGTTAGT+TGG - chr7_1:8642380-8642399 Msa1008390:intron 25.0%
!! TGGTTCAATATTTTACTTTG+TGG + chr7_1:8642409-8642428 None:intergenic 25.0%
! ATCTCCAAAAGTTTATTAGT+TGG - chr7_1:8642731-8642750 Msa1008390:CDS 25.0%
! TCTCCAAAAGTTTATTAGTT+GGG - chr7_1:8642732-8642751 Msa1008390:CDS 25.0%
! TTAACTTCTTCTATAAGCTT+TGG + chr7_1:8640538-8640557 None:intergenic 25.0%
!!! TTGTTACATTTTTTATGGGT+TGG - chr7_1:8640593-8640612 Msa1008390:CDS 25.0%
!!! TGTTACATTTTTTATGGGTT+GGG - chr7_1:8640594-8640613 Msa1008390:CDS 25.0%
! ATACCTAAACTTATTGAAGA+TGG - chr7_1:8640700-8640719 Msa1008390:intron 25.0%
! TACCTAAACTTATTGAAGAT+GGG - chr7_1:8640701-8640720 Msa1008390:intron 25.0%
!!! GGTAATACTTTTTACTGTTT+TGG - chr7_1:8640739-8640758 Msa1008390:intron 25.0%
!!! TGAATAAGAAACTAGCTTTA+TGG + chr7_1:8640801-8640820 None:intergenic 25.0%
!!! TCTTTGTTTTGTTTGGATAT+CGG - chr7_1:8641024-8641043 Msa1008390:CDS 25.0%
! AGTCAAATAATTACAAAGGT+AGG + chr7_1:8641056-8641075 None:intergenic 25.0%
! TGTCAGTCAAATAATTACAA+AGG + chr7_1:8641060-8641079 None:intergenic 25.0%
! ATTGAATAACTTTCTACTTC+AGG + chr7_1:8641429-8641448 None:intergenic 25.0%
!!! ACAATATCTCTAAAGTAGAA+GGG + chr7_1:8641648-8641667 None:intergenic 25.0%
!!! AACAATATCTCTAAAGTAGA+AGG + chr7_1:8641649-8641668 None:intergenic 25.0%
! TTAGAGATATTGTTGTAATC+TGG - chr7_1:8641655-8641674 Msa1008390:intron 25.0%
! AAGTCATATGTATGATACTA+CGG + chr7_1:8641682-8641701 None:intergenic 25.0%
! GAAACATATTTCACAAACAA+TGG + chr7_1:8641800-8641819 None:intergenic 25.0%
! TGTAACATAATATCAAGTTC+AGG - chr7_1:8641846-8641865 Msa1008390:intron 25.0%
!!! TGAATTTCTTGTTTTTTGGT+GGG + chr7_1:8641923-8641942 None:intergenic 25.0%
!!! TTGAATTTCTTGTTTTTTGG+TGG + chr7_1:8641924-8641943 None:intergenic 25.0%
!! GAGATACAAGCTATAAATTT+TGG - chr7_1:8642028-8642047 Msa1008390:intron 25.0%
!!! AAGCTATAAATTTTGGAGAA+TGG - chr7_1:8642035-8642054 Msa1008390:intron 25.0%
!! ACAACAACAAAAGTTCATTT+TGG - chr7_1:8642146-8642165 Msa1008390:intron 25.0%
!!! CTAGTTCATTAAATTGGTTT+TGG + chr7_1:8642261-8642280 None:intergenic 25.0%
! GTAAAGGTAAAATTGTTAGT+TGG - chr7_1:8642380-8642399 Msa1008390:intron 25.0%
!! TGGTTCAATATTTTACTTTG+TGG + chr7_1:8642409-8642428 None:intergenic 25.0%
! ATCTCCAAAAGTTTATTAGT+TGG - chr7_1:8642731-8642750 Msa1008390:CDS 25.0%
! TCTCCAAAAGTTTATTAGTT+GGG - chr7_1:8642732-8642751 Msa1008390:CDS 25.0%
GACACAATTTAGGAATCAAA+GGG - chr7_1:8640629-8640648 Msa1008390:CDS 30.0%
ACACAATTTAGGAATCAAAG+GGG - chr7_1:8640630-8640649 Msa1008390:CDS 30.0%
CTTCAATAAGTTTAGGTATG+AGG + chr7_1:8640699-8640718 None:intergenic 30.0%
ATCCCATCTTCAATAAGTTT+AGG + chr7_1:8640706-8640725 None:intergenic 30.0%
!! TTTTTCTGTCATCTCTAGAA+TGG + chr7_1:8640928-8640947 None:intergenic 30.0%
GTAGTATCATACATATGACT+TGG - chr7_1:8641681-8641700 Msa1008390:intron 30.0%
AACGGTAGTTCCATATATTA+TGG + chr7_1:8641718-8641737 None:intergenic 30.0%
GATCATTTGTTTATGCAACA+CGG + chr7_1:8641772-8641791 None:intergenic 30.0%
!! CTATAAATTTTGGAGAATGG+TGG - chr7_1:8642038-8642057 Msa1008390:intron 30.0%
!! TTGTTGTTACTTTCCATCAA+TGG + chr7_1:8642133-8642152 None:intergenic 30.0%
! AAGATACAACTTGCTTAGAT+TGG - chr7_1:8642173-8642192 Msa1008390:intron 30.0%
GAAACATATATGACAGATTG+AGG + chr7_1:8642214-8642233 None:intergenic 30.0%
TCTGTCATATATGTTTCCTT+TGG - chr7_1:8642217-8642236 Msa1008390:intron 30.0%
! TTTACCTTGTTGTCATTACT+AGG + chr7_1:8642331-8642350 None:intergenic 30.0%
TACTTCCATGGAAATCATTA+GGG + chr7_1:8642363-8642382 None:intergenic 30.0%
TTACTTCCATGGAAATCATT+AGG + chr7_1:8642364-8642383 None:intergenic 30.0%
AATGATTTCCATGGAAGTAA+AGG - chr7_1:8642364-8642383 Msa1008390:intron 30.0%
! CAATTTTACCTTTACTTCCA+TGG + chr7_1:8642375-8642394 None:intergenic 30.0%
GAATTAGGGAAAGATGATAA+TGG - chr7_1:8642577-8642596 Msa1008390:CDS 30.0%
TTATATCAAGGCAAGAGATA+AGG - chr7_1:8642602-8642621 Msa1008390:CDS 30.0%
GACACAATTTAGGAATCAAA+GGG - chr7_1:8640629-8640648 Msa1008390:CDS 30.0%
ACACAATTTAGGAATCAAAG+GGG - chr7_1:8640630-8640649 Msa1008390:CDS 30.0%
CTTCAATAAGTTTAGGTATG+AGG + chr7_1:8640699-8640718 None:intergenic 30.0%
ATCCCATCTTCAATAAGTTT+AGG + chr7_1:8640706-8640725 None:intergenic 30.0%
!! TTTTTCTGTCATCTCTAGAA+TGG + chr7_1:8640928-8640947 None:intergenic 30.0%
GTAGTATCATACATATGACT+TGG - chr7_1:8641681-8641700 Msa1008390:intron 30.0%
AACGGTAGTTCCATATATTA+TGG + chr7_1:8641718-8641737 None:intergenic 30.0%
GATCATTTGTTTATGCAACA+CGG + chr7_1:8641772-8641791 None:intergenic 30.0%
!! CTATAAATTTTGGAGAATGG+TGG - chr7_1:8642038-8642057 Msa1008390:intron 30.0%
!! TTGTTGTTACTTTCCATCAA+TGG + chr7_1:8642133-8642152 None:intergenic 30.0%
! AAGATACAACTTGCTTAGAT+TGG - chr7_1:8642173-8642192 Msa1008390:intron 30.0%
GAAACATATATGACAGATTG+AGG + chr7_1:8642214-8642233 None:intergenic 30.0%
TCTGTCATATATGTTTCCTT+TGG - chr7_1:8642217-8642236 Msa1008390:intron 30.0%
! TTTACCTTGTTGTCATTACT+AGG + chr7_1:8642331-8642350 None:intergenic 30.0%
TACTTCCATGGAAATCATTA+GGG + chr7_1:8642363-8642382 None:intergenic 30.0%
TTACTTCCATGGAAATCATT+AGG + chr7_1:8642364-8642383 None:intergenic 30.0%
AATGATTTCCATGGAAGTAA+AGG - chr7_1:8642364-8642383 Msa1008390:intron 30.0%
! CAATTTTACCTTTACTTCCA+TGG + chr7_1:8642375-8642394 None:intergenic 30.0%
GAATTAGGGAAAGATGATAA+TGG - chr7_1:8642577-8642596 Msa1008390:CDS 30.0%
TTATATCAAGGCAAGAGATA+AGG - chr7_1:8642602-8642621 Msa1008390:CDS 30.0%
!! TCTATAAGCTTTGGAAGTCT+TGG + chr7_1:8640529-8640548 None:intergenic 35.0%
!!! ATTTTTTATGGGTTGGGCTT+TGG - chr7_1:8640600-8640619 Msa1008390:CDS 35.0%
GGACACAATTTAGGAATCAA+AGG - chr7_1:8640628-8640647 Msa1008390:CDS 35.0%
!! GATGGGATTATTGATTCTGA+AGG - chr7_1:8640718-8640737 Msa1008390:intron 35.0%
GACAGAAAAAGTTAAGTTCC+AGG - chr7_1:8640938-8640957 Msa1008390:CDS 35.0%
AAGTTAAGTTCCAGGCTTAT+TGG - chr7_1:8640946-8640965 Msa1008390:CDS 35.0%
!!! GTCAGACTCTTTGTTTTGTT+TGG - chr7_1:8641017-8641036 Msa1008390:CDS 35.0%
AACTTTCTACTTCAGGATTG+TGG + chr7_1:8641422-8641441 None:intergenic 35.0%
ATAGACACATAAGAGAGGAA+GGG - chr7_1:8641584-8641603 Msa1008390:intron 35.0%
TGTCCATCATAGGTATATCA+GGG + chr7_1:8641952-8641971 None:intergenic 35.0%
!! AAGTTTGTTGTGTCCATCAT+AGG + chr7_1:8641962-8641981 None:intergenic 35.0%
! TACAACTTGCTTAGATTGGT+TGG - chr7_1:8642177-8642196 Msa1008390:intron 35.0%
!! ATATGTTTCCTTTGGTAGTG+TGG - chr7_1:8642225-8642244 Msa1008390:intron 35.0%
!! CTAGGGCTAGTTCATTAAAT+TGG + chr7_1:8642267-8642286 None:intergenic 35.0%
CAATTTAATGAACTAGCCCT+AGG - chr7_1:8642265-8642284 Msa1008390:intron 35.0%
! TTCTAGACAAGCCTTTTCTT+TGG - chr7_1:8642296-8642315 Msa1008390:intron 35.0%
! TCTAGACAAGCCTTTTCTTT+GGG - chr7_1:8642297-8642316 Msa1008390:intron 35.0%
ATGACTTATGAAGCAAGCAA+TGG + chr7_1:8642437-8642456 None:intergenic 35.0%
ATTTGTGATGTGTAGAAGAC+TGG - chr7_1:8642550-8642569 Msa1008390:CDS 35.0%
TAGAAGACTGGACTTGAATT+AGG - chr7_1:8642562-8642581 Msa1008390:CDS 35.0%
AGAAGACTGGACTTGAATTA+GGG - chr7_1:8642563-8642582 Msa1008390:CDS 35.0%
!! AGTTGGTGATGATGACATAA+AGG - chr7_1:8642642-8642661 Msa1008390:CDS 35.0%
! TCGCCCAACTAATAAACTTT+TGG + chr7_1:8642738-8642757 None:intergenic 35.0%
!! TCTATAAGCTTTGGAAGTCT+TGG + chr7_1:8640529-8640548 None:intergenic 35.0%
!!! ATTTTTTATGGGTTGGGCTT+TGG - chr7_1:8640600-8640619 Msa1008390:CDS 35.0%
GGACACAATTTAGGAATCAA+AGG - chr7_1:8640628-8640647 Msa1008390:CDS 35.0%
!! GATGGGATTATTGATTCTGA+AGG - chr7_1:8640718-8640737 Msa1008390:intron 35.0%
GACAGAAAAAGTTAAGTTCC+AGG - chr7_1:8640938-8640957 Msa1008390:CDS 35.0%
AAGTTAAGTTCCAGGCTTAT+TGG - chr7_1:8640946-8640965 Msa1008390:CDS 35.0%
!!! GTCAGACTCTTTGTTTTGTT+TGG - chr7_1:8641017-8641036 Msa1008390:CDS 35.0%
AACTTTCTACTTCAGGATTG+TGG + chr7_1:8641422-8641441 None:intergenic 35.0%
ATAGACACATAAGAGAGGAA+GGG - chr7_1:8641584-8641603 Msa1008390:intron 35.0%
TGTCCATCATAGGTATATCA+GGG + chr7_1:8641952-8641971 None:intergenic 35.0%
!! AAGTTTGTTGTGTCCATCAT+AGG + chr7_1:8641962-8641981 None:intergenic 35.0%
! TACAACTTGCTTAGATTGGT+TGG - chr7_1:8642177-8642196 Msa1008390:intron 35.0%
!! ATATGTTTCCTTTGGTAGTG+TGG - chr7_1:8642225-8642244 Msa1008390:intron 35.0%
!! CTAGGGCTAGTTCATTAAAT+TGG + chr7_1:8642267-8642286 None:intergenic 35.0%
CAATTTAATGAACTAGCCCT+AGG - chr7_1:8642265-8642284 Msa1008390:intron 35.0%
! TTCTAGACAAGCCTTTTCTT+TGG - chr7_1:8642296-8642315 Msa1008390:intron 35.0%
! TCTAGACAAGCCTTTTCTTT+GGG - chr7_1:8642297-8642316 Msa1008390:intron 35.0%
ATGACTTATGAAGCAAGCAA+TGG + chr7_1:8642437-8642456 None:intergenic 35.0%
ATTTGTGATGTGTAGAAGAC+TGG - chr7_1:8642550-8642569 Msa1008390:CDS 35.0%
TAGAAGACTGGACTTGAATT+AGG - chr7_1:8642562-8642581 Msa1008390:CDS 35.0%
AGAAGACTGGACTTGAATTA+GGG - chr7_1:8642563-8642582 Msa1008390:CDS 35.0%
!! AGTTGGTGATGATGACATAA+AGG - chr7_1:8642642-8642661 Msa1008390:CDS 35.0%
! TCGCCCAACTAATAAACTTT+TGG + chr7_1:8642738-8642757 None:intergenic 35.0%
!! ATAAGCTTTGGAAGTCTTGG+AGG + chr7_1:8640526-8640545 None:intergenic 40.0%
TTGGAAGTGGGACACAATTT+AGG - chr7_1:8640619-8640638 Msa1008390:CDS 40.0%
GATCATTTCTTCAGCTTCTG+TGG - chr7_1:8640840-8640859 Msa1008390:CDS 40.0%
TTAAGTTCCAGGCTTATTGG+TGG - chr7_1:8640949-8640968 Msa1008390:CDS 40.0%
CGAATAATGCCTCTTGTGTA+TGG - chr7_1:8640979-8640998 Msa1008390:CDS 40.0%
AGCACAAGGTGTACTAAAGA+AGG + chr7_1:8641098-8641117 None:intergenic 40.0%
TAGTACACCTTGTGCTTAAG+AGG - chr7_1:8641102-8641121 Msa1008390:CDS 40.0%
GACTCATAGACACATAAGAG+AGG - chr7_1:8641579-8641598 Msa1008390:intron 40.0%
CATAGACACATAAGAGAGGA+AGG - chr7_1:8641583-8641602 Msa1008390:intron 40.0%
TAGACACATAAGAGAGGAAG+GGG - chr7_1:8641585-8641604 Msa1008390:intron 40.0%
GTCCATCATAGGTATATCAG+GGG + chr7_1:8641951-8641970 None:intergenic 40.0%
GTGTCCATCATAGGTATATC+AGG + chr7_1:8641953-8641972 None:intergenic 40.0%
GGTGATATGGAAAATACACC+AGG + chr7_1:8642091-8642110 None:intergenic 40.0%
! TGGTAGGAACTTTGGTGATA+TGG + chr7_1:8642104-8642123 None:intergenic 40.0%
TCACCAAAGTTCCTACCAAT+TGG - chr7_1:8642106-8642125 Msa1008390:intron 40.0%
CTTTCCATCAATGGACCAAT+TGG + chr7_1:8642124-8642143 None:intergenic 40.0%
CATTACTACCACACTACCAA+AGG + chr7_1:8642236-8642255 None:intergenic 40.0%
!! CTTTGGTAGTGTGGTAGTAA+TGG - chr7_1:8642234-8642253 Msa1008390:intron 40.0%
GTCTAGAAGATCAAGTCCTA+GGG + chr7_1:8642284-8642303 None:intergenic 40.0%
TGTCTAGAAGATCAAGTCCT+AGG + chr7_1:8642285-8642304 None:intergenic 40.0%
TCGTCCTAGTAATGACAACA+AGG - chr7_1:8642324-8642343 Msa1008390:intron 40.0%
GCATACCCTAATGATTTCCA+TGG - chr7_1:8642355-8642374 Msa1008390:intron 40.0%
GCTTGCTTCATAAGTCATTG+TGG - chr7_1:8642439-8642458 Msa1008390:intron 40.0%
GCTTCATAAGTCATTGTGGA+TGG - chr7_1:8642443-8642462 Msa1008390:intron 40.0%
GGATGGAATTCTACCATAGA+AGG - chr7_1:8642460-8642479 Msa1008390:intron 40.0%
AAGGCAAGAGATAAGGAAGA+AGG - chr7_1:8642609-8642628 Msa1008390:CDS 40.0%
AAGAAGGTGGATCAAGTAGT+TGG - chr7_1:8642625-8642644 Msa1008390:CDS 40.0%
TAATATAGAAGAAGGTGGCC+AGG - chr7_1:8642699-8642718 Msa1008390:CDS 40.0%
TTTGGAGATTATGTGATGCC+TGG + chr7_1:8642720-8642739 None:intergenic 40.0%
!! ATAAGCTTTGGAAGTCTTGG+AGG + chr7_1:8640526-8640545 None:intergenic 40.0%
TTGGAAGTGGGACACAATTT+AGG - chr7_1:8640619-8640638 Msa1008390:CDS 40.0%
GATCATTTCTTCAGCTTCTG+TGG - chr7_1:8640840-8640859 Msa1008390:CDS 40.0%
TTAAGTTCCAGGCTTATTGG+TGG - chr7_1:8640949-8640968 Msa1008390:CDS 40.0%
CGAATAATGCCTCTTGTGTA+TGG - chr7_1:8640979-8640998 Msa1008390:CDS 40.0%
AGCACAAGGTGTACTAAAGA+AGG + chr7_1:8641098-8641117 None:intergenic 40.0%
TAGTACACCTTGTGCTTAAG+AGG - chr7_1:8641102-8641121 Msa1008390:CDS 40.0%
GACTCATAGACACATAAGAG+AGG - chr7_1:8641579-8641598 Msa1008390:intron 40.0%
CATAGACACATAAGAGAGGA+AGG - chr7_1:8641583-8641602 Msa1008390:intron 40.0%
TAGACACATAAGAGAGGAAG+GGG - chr7_1:8641585-8641604 Msa1008390:intron 40.0%
GTCCATCATAGGTATATCAG+GGG + chr7_1:8641951-8641970 None:intergenic 40.0%
GTGTCCATCATAGGTATATC+AGG + chr7_1:8641953-8641972 None:intergenic 40.0%
GGTGATATGGAAAATACACC+AGG + chr7_1:8642091-8642110 None:intergenic 40.0%
! TGGTAGGAACTTTGGTGATA+TGG + chr7_1:8642104-8642123 None:intergenic 40.0%
TCACCAAAGTTCCTACCAAT+TGG - chr7_1:8642106-8642125 Msa1008390:intron 40.0%
CTTTCCATCAATGGACCAAT+TGG + chr7_1:8642124-8642143 None:intergenic 40.0%
CATTACTACCACACTACCAA+AGG + chr7_1:8642236-8642255 None:intergenic 40.0%
!! CTTTGGTAGTGTGGTAGTAA+TGG - chr7_1:8642234-8642253 Msa1008390:intron 40.0%
GTCTAGAAGATCAAGTCCTA+GGG + chr7_1:8642284-8642303 None:intergenic 40.0%
TGTCTAGAAGATCAAGTCCT+AGG + chr7_1:8642285-8642304 None:intergenic 40.0%
TCGTCCTAGTAATGACAACA+AGG - chr7_1:8642324-8642343 Msa1008390:intron 40.0%
GCATACCCTAATGATTTCCA+TGG - chr7_1:8642355-8642374 Msa1008390:intron 40.0%
GCTTGCTTCATAAGTCATTG+TGG - chr7_1:8642439-8642458 Msa1008390:intron 40.0%
GCTTCATAAGTCATTGTGGA+TGG - chr7_1:8642443-8642462 Msa1008390:intron 40.0%
GGATGGAATTCTACCATAGA+AGG - chr7_1:8642460-8642479 Msa1008390:intron 40.0%
AAGGCAAGAGATAAGGAAGA+AGG - chr7_1:8642609-8642628 Msa1008390:CDS 40.0%
AAGAAGGTGGATCAAGTAGT+TGG - chr7_1:8642625-8642644 Msa1008390:CDS 40.0%
TAATATAGAAGAAGGTGGCC+AGG - chr7_1:8642699-8642718 Msa1008390:CDS 40.0%
TTTGGAGATTATGTGATGCC+TGG + chr7_1:8642720-8642739 None:intergenic 40.0%
! GCTTTTGTGTGTGGCTCATT+TGG - chr7_1:8640862-8640881 Msa1008390:CDS 45.0%
CCTTTAACCACCAATAAGCC+TGG + chr7_1:8640959-8640978 None:intergenic 45.0%
! CCAGGCTTATTGGTGGTTAA+AGG - chr7_1:8640956-8640975 Msa1008390:CDS 45.0%
TGCTCACAACCATACACAAG+AGG + chr7_1:8640991-8641010 None:intergenic 45.0%
TTGTGTATGGTTGTGAGCAG+TGG - chr7_1:8640992-8641011 Msa1008390:CDS 45.0%
CCACTGCGACTAAAGAGTAA+CGG + chr7_1:8641736-8641755 None:intergenic 45.0%
TACTCTTTAGTCGCAGTGGT+AGG - chr7_1:8641737-8641756 Msa1008390:intron 45.0%
! TGATGTCCTTTTCGCATTGC+AGG - chr7_1:8641893-8641912 Msa1008390:intron 45.0%
GGATTTCCTGCAATGCGAAA+AGG + chr7_1:8641902-8641921 None:intergenic 45.0%
CTCCCCTGATATACCTATGA+TGG - chr7_1:8641946-8641965 Msa1008390:intron 45.0%
ACAACAAACTTCCCATTGCG+CGG - chr7_1:8641971-8641990 Msa1008390:intron 45.0%
ACTGCTTATGATCTTGAGCC+TGG - chr7_1:8642070-8642089 Msa1008390:intron 45.0%
GGACCAATTGGTAGGAACTT+TGG + chr7_1:8642112-8642131 None:intergenic 45.0%
CCATCAATGGACCAATTGGT+AGG + chr7_1:8642120-8642139 None:intergenic 45.0%
CCTACCAATTGGTCCATTGA+TGG - chr7_1:8642117-8642136 Msa1008390:intron 45.0%
GGACGAACAACCCAAAGAAA+AGG + chr7_1:8642310-8642329 None:intergenic 45.0%
CTTATGAAGCAAGCAATGGC+TGG + chr7_1:8642433-8642452 None:intergenic 45.0%
! ACCATAGAAGGTGTACATGC+TGG - chr7_1:8642472-8642491 Msa1008390:intron 45.0%
ACCAGCATGTACACCTTCTA+TGG + chr7_1:8642476-8642495 None:intergenic 45.0%
GCAAGAGATAAGGAAGAAGG+TGG - chr7_1:8642612-8642631 Msa1008390:CDS 45.0%
! GCTTTTGTGTGTGGCTCATT+TGG - chr7_1:8640862-8640881 Msa1008390:CDS 45.0%
CCTTTAACCACCAATAAGCC+TGG + chr7_1:8640959-8640978 None:intergenic 45.0%
! CCAGGCTTATTGGTGGTTAA+AGG - chr7_1:8640956-8640975 Msa1008390:CDS 45.0%
TGCTCACAACCATACACAAG+AGG + chr7_1:8640991-8641010 None:intergenic 45.0%
TTGTGTATGGTTGTGAGCAG+TGG - chr7_1:8640992-8641011 Msa1008390:CDS 45.0%
CCACTGCGACTAAAGAGTAA+CGG + chr7_1:8641736-8641755 None:intergenic 45.0%
TACTCTTTAGTCGCAGTGGT+AGG - chr7_1:8641737-8641756 Msa1008390:intron 45.0%
! TGATGTCCTTTTCGCATTGC+AGG - chr7_1:8641893-8641912 Msa1008390:intron 45.0%
GGATTTCCTGCAATGCGAAA+AGG + chr7_1:8641902-8641921 None:intergenic 45.0%
CTCCCCTGATATACCTATGA+TGG - chr7_1:8641946-8641965 Msa1008390:intron 45.0%
ACAACAAACTTCCCATTGCG+CGG - chr7_1:8641971-8641990 Msa1008390:intron 45.0%
ACTGCTTATGATCTTGAGCC+TGG - chr7_1:8642070-8642089 Msa1008390:intron 45.0%
GGACCAATTGGTAGGAACTT+TGG + chr7_1:8642112-8642131 None:intergenic 45.0%
CCATCAATGGACCAATTGGT+AGG + chr7_1:8642120-8642139 None:intergenic 45.0%
CCTACCAATTGGTCCATTGA+TGG - chr7_1:8642117-8642136 Msa1008390:intron 45.0%
GGACGAACAACCCAAAGAAA+AGG + chr7_1:8642310-8642329 None:intergenic 45.0%
CTTATGAAGCAAGCAATGGC+TGG + chr7_1:8642433-8642452 None:intergenic 45.0%
! ACCATAGAAGGTGTACATGC+TGG - chr7_1:8642472-8642491 Msa1008390:intron 45.0%
ACCAGCATGTACACCTTCTA+TGG + chr7_1:8642476-8642495 None:intergenic 45.0%
GCAAGAGATAAGGAAGAAGG+TGG - chr7_1:8642612-8642631 Msa1008390:CDS 45.0%
!! TATGGGTTGGGCTTTGGAAG+TGG - chr7_1:8640606-8640625 Msa1008390:CDS 50.0%
!! ATGGGTTGGGCTTTGGAAGT+GGG - chr7_1:8640607-8640626 Msa1008390:CDS 50.0%
TCCAGCTTCTGCCACTACTT+TGG - chr7_1:8640663-8640682 Msa1008390:CDS 50.0%
GACAACACACGCCAAAGTAG+TGG + chr7_1:8640677-8640696 None:intergenic 50.0%
! GCTTCTGTGGCTTTTGTGTG+TGG - chr7_1:8640853-8640872 Msa1008390:CDS 50.0%
TGTATGGTTGTGAGCAGTGG+CGG - chr7_1:8640995-8641014 Msa1008390:CDS 50.0%
AGAGACGCCTCTTAAGCACA+AGG + chr7_1:8641112-8641131 None:intergenic 50.0%
TGGGAGGTGATCATCTAGCA+TGG - chr7_1:8641610-8641629 Msa1008390:intron 50.0%
CCGTTACTCTTTAGTCGCAG+TGG - chr7_1:8641733-8641752 Msa1008390:intron 50.0%
GTCGCAGTGGTAGGTACATT+TGG - chr7_1:8641746-8641765 Msa1008390:intron 50.0%
TCTTATCTACGCCGCGCAAT+GGG + chr7_1:8641985-8642004 None:intergenic 50.0%
ATCTTATCTACGCCGCGCAA+TGG + chr7_1:8641986-8642005 None:intergenic 50.0%
TGAAGCAAGCAATGGCTGGA+TGG + chr7_1:8642429-8642448 None:intergenic 50.0%
!! TATGGGTTGGGCTTTGGAAG+TGG - chr7_1:8640606-8640625 Msa1008390:CDS 50.0%
!! ATGGGTTGGGCTTTGGAAGT+GGG - chr7_1:8640607-8640626 Msa1008390:CDS 50.0%
TCCAGCTTCTGCCACTACTT+TGG - chr7_1:8640663-8640682 Msa1008390:CDS 50.0%
GACAACACACGCCAAAGTAG+TGG + chr7_1:8640677-8640696 None:intergenic 50.0%
! GCTTCTGTGGCTTTTGTGTG+TGG - chr7_1:8640853-8640872 Msa1008390:CDS 50.0%
TGTATGGTTGTGAGCAGTGG+CGG - chr7_1:8640995-8641014 Msa1008390:CDS 50.0%
AGAGACGCCTCTTAAGCACA+AGG + chr7_1:8641112-8641131 None:intergenic 50.0%
TGGGAGGTGATCATCTAGCA+TGG - chr7_1:8641610-8641629 Msa1008390:intron 50.0%
CCGTTACTCTTTAGTCGCAG+TGG - chr7_1:8641733-8641752 Msa1008390:intron 50.0%
GTCGCAGTGGTAGGTACATT+TGG - chr7_1:8641746-8641765 Msa1008390:intron 50.0%
TCTTATCTACGCCGCGCAAT+GGG + chr7_1:8641985-8642004 None:intergenic 50.0%
ATCTTATCTACGCCGCGCAA+TGG + chr7_1:8641986-8642005 None:intergenic 50.0%
TGAAGCAAGCAATGGCTGGA+TGG + chr7_1:8642429-8642448 None:intergenic 50.0%
GCCAAAGTAGTGGCAGAAGC+TGG + chr7_1:8640667-8640686 None:intergenic 55.0%
ACATAAGAGAGGAAGGGGCG+TGG - chr7_1:8641590-8641609 Msa1008390:intron 55.0%
! CATAAGAGAGGAAGGGGCGT+GGG - chr7_1:8641591-8641610 Msa1008390:intron 55.0%
CTGGTGTGCGTTTCTTGTGC+TGG - chr7_1:8642491-8642510 Msa1008390:intron 55.0%
GCCAAAGTAGTGGCAGAAGC+TGG + chr7_1:8640667-8640686 None:intergenic 55.0%
ACATAAGAGAGGAAGGGGCG+TGG - chr7_1:8641590-8641609 Msa1008390:intron 55.0%
! CATAAGAGAGGAAGGGGCGT+GGG - chr7_1:8641591-8641610 Msa1008390:intron 55.0%
CTGGTGTGCGTTTCTTGTGC+TGG - chr7_1:8642491-8642510 Msa1008390:intron 55.0%
! AAGAGAGGAAGGGGCGTGGG+AGG - chr7_1:8641594-8641613 Msa1008390:intron 65.0%
! AAGAGAGGAAGGGGCGTGGG+AGG - chr7_1:8641594-8641613 Msa1008390:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 8640520 8642762 8640520 ID=Msa1008390;Name=Msa1008390
chr7_1 mRNA 8640520 8642762 8640520 ID=Msa1008390-mRNA-1;Parent=Msa1008390;Name=Msa1008390-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0.5|0|1|1|1|3|0|328
chr7_1 exon 8642543 8642762 8642543 ID=Msa1008390-mRNA-1:exon:2553;Parent=Msa1008390-mRNA-1
chr7_1 exon 8640799 8641367 8640799 ID=Msa1008390-mRNA-1:exon:2552;Parent=Msa1008390-mRNA-1
chr7_1 exon 8640520 8640717 8640520 ID=Msa1008390-mRNA-1:exon:2551;Parent=Msa1008390-mRNA-1
chr7_1 CDS 8642543 8642762 8642543 ID=Msa1008390-mRNA-1:cds;Parent=Msa1008390-mRNA-1
chr7_1 CDS 8640799 8641367 8640799 ID=Msa1008390-mRNA-1:cds;Parent=Msa1008390-mRNA-1
chr7_1 CDS 8640520 8640717 8640520 ID=Msa1008390-mRNA-1:cds;Parent=Msa1008390-mRNA-1
Gene Sequence

>Msa1008390

ATGCCTCCAAGACTTCCAAAGCTTATAGAAGAAGTTAATGCTTTGAATGTTGACAACATGATCAATTGTATTGTTGTTACATTTTTTATGGGTTGGGCTTTGGAAGTGGGACACAATTTAGGAATCAAAGGGGCTCTACTTTGTCCAGCTTCTGCCACTACTTTGGCGTGTGTTGTCCTCATACCTAAACTTATTGAAGATGGGATTATTGATTCTGAAGGAAATCCCACCAAAAAACAAGAAATTCAAATCTCCCCTGATATACCTATGATGGACACAACAAACTTCCCATTGCGCGGCGTAGATAAGATCTTCTTTGATCATTCTGTGCAAGAGATACAAGCTATAAATTTTGGAGAATGGTGGCTTTGCAACACTGCTTATGATCTTGAGCCTGGTGTATTTTCCATATCACCAAAGTTCCTACCAATTGGTCCATTGATGGAAAGTAACAACAACAAAAGTTCATTTTGGCAAGAAGATACAACTTGCTTAGATTGGTTGGATAAACAAGCACCTCAATCTGTCATATATGTTTCCTTTGGTAGTGTGGTAGTAATGGACCAAAACCAATTTAATGAACTAGCCCTAGGACTTGATCTTCTAGACAAGCCTTTTCTTTGGGTTGTTCGTCCTAGTAATGACAACAAGGTAAACTATGCATACCCTAATGATTTCCATGGAAGTAAAGGTAAAATTGTTAGTTGGGCACCACAAAGTAAAATATTGAACCATCCAGCCATTGCTTGCTTCATAAGTCATTGTGGATGGAATTCTACCATAGAAGGTAAGACTGGACTTGAATTAGGGAAAGATGATAATGGATTTATATCAAGGCAAGAGATAAGGAAGAAGGTGGATCAAGTAGTTGGTGATGATGACATAAAGGCAATGTGTTTGAAAATGAAGAAAATGACTATTAATAATATAGAAGAAGGTGGCCAGGCATCACATAATCTCCAAAAGTTTATTAGTTGGGCGAACTAA

Protein sequence

>Msa1008390

MPPRLPKLIEEVNALNVDNMINCIVVTFFMGWALEVGHNLGIKGALLCPASATTLACVVLIPKLIEDGIIDSEGNPTKKQEIQISPDIPMMDTTNFPLRGVDKIFFDHSVQEIQAINFGEWWLCNTAYDLEPGVFSISPKFLPIGPLMESNNNKSSFWQEDTTCLDWLDKQAPQSVIYVSFGSVVVMDQNQFNELALGLDLLDKPFLWVVRPSNDNKVNYAYPNDFHGSKGKIVSWAPQSKILNHPAIACFISHCGWNSTIEGKTGLELGKDDNGFISRQEIRKKVDQVVGDDDIKAMCLKMKKMTINNIEEGGQASHNLQKFISWAN*