AlfalfaGEDB | Msa0287790

M. sativa cultivar zhongmu-4 / Msa0287790

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0042802 GO:0097159 GO:1901363
PFAM: PF05182.16

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0287790	XP_013463834.1	96.791	1340	31	3	1	1340	1	1328	0.0	2618

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0287790	sp\|F4KDH9\|FIPS5_ARATH	46.835	553	210	15	1	518	1	504	8.32e-115	392
Msa0287790	sp\|F4KDH9\|FIPS5_ARATH	39.263	624	316	16	717	1325	603	1178	3.84e-89	318

Showing 1 to 2 of 2 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000910	Msa0287790	0.850336	1.813496e-60	-8.615850e-47
Msa0001520	Msa0287790	0.805535	1.273914e-49	-8.615850e-47
Msa0002560	Msa0287790	0.829737	4.355160e-55	-8.615850e-47
Msa0003220	Msa0287790	0.858646	7.140720e-63	-8.615850e-47
Msa0003270	Msa0287790	0.808981	2.371253e-50	-8.615850e-47
Msa0005270	Msa0287790	0.803820	2.904365e-49	-8.615850e-47
Msa0005620	Msa0287790	0.818226	2.188843e-52	-8.615850e-47
Msa0006110	Msa0287790	0.819889	9.163070e-53	-8.615850e-47
Msa0010110	Msa0287790	0.800858	1.183400e-48	-8.615850e-47
Msa0010770	Msa0287790	0.836541	8.807423e-57	-8.615850e-47

Showing 1 to 10 of 780 entries

Previous1 2 3 4 5…78Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0287790	MtrunA17_Chr2g0304751	96.791	1340	31	3	1	1340	1	1328	0.0	2618
Msa0287790	MtrunA17_Chr4g0068351	32.843	204	87	5	315	517	157	311	7.89e-22	102

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0287790	AT5G58040.2	46.835	553	210	15	1	518	1	504	5.51e-116	392
Msa0287790	AT5G58040.2	40.063	639	320	16	717	1340	603	1193	1.78e-97	340
Msa0287790	AT5G58040.1	46.835	553	210	15	1	518	1	504	8.46e-116	392
Msa0287790	AT5G58040.1	39.263	624	316	16	717	1325	603	1178	3.90e-90	318
Msa0287790	AT3G66652.3	57.143	49	21	0	340	388	149	197	5.18e-11	68.2
Msa0287790	AT3G66652.1	57.143	49	21	0	340	388	149	197	5.18e-11	68.2
Msa0287790	AT3G66652.2	57.143	49	21	0	340	388	149	197	5.18e-11	68.2

Showing 1 to 7 of 7 entries

Previous1Next

Find 472 sgRNAs with CRISPR-Local

Find 926 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTCTAGAAAATCCAAA+TGG	0.556779	2_3:+31080105	Msa0287790:CDS
AAACATTAACTGGTTATTAC+AGG	0.345848	2_3:+31082221	Msa0287790:three_prime_UTR
AAAGGCGATCTAGGCAGGAA+AGG	0.618493	2_3:+31079950	Msa0287790:CDS
AAAGTTCACATCATAAGGGG+CGG	0.626082	2_3:+31079887	Msa0287790:CDS
AAATCACATGTAGTTAGATT+AGG	0.452692	2_3:+31082648	Msa0287790:three_prime_UTR
AAATCTGATGCATCAACATT+TGG	0.373327	2_3:-31076654	None:intergenic
AAATGGTCCATCAAATGAGA+AGG	0.597269	2_3:+31080122	Msa0287790:CDS
AAATTCTGTAAAATCCGATG+TGG	0.620683	2_3:+31077051	Msa0287790:CDS
AACAGGAATGCCACCAGCAG+CGG	0.571896	2_3:-31072770	None:intergenic
AACATCACTTTGTCCCACAT+CGG	0.600840	2_3:-31077065	None:intergenic

Showing 1 to 10 of 472 entries

Previous1 2 3 4 5…48Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TTAACCTAAGAATGATAGAG+AGG	+	chr2_3:31071873-31071892	Msa0287790:five_prime_UTR	30.0%
GTACTTTGTATTGTAGAAGA+GGG	-	chr2_3:31071962-31071981	None:intergenic	30.0%
TGTACTTTGTATTGTAGAAG+AGG	-	chr2_3:31071963-31071982	None:intergenic	30.0%
TCAATTTCAATTTCAACAGG+CGG	-	chr2_3:31072280-31072299	None:intergenic	30.0%
AATTGAAAAGGAACCTGAAT+CGG	+	chr2_3:31072294-31072313	Msa0287790:CDS	30.0%
TTAACATCATCTTGATCCAT+CGG	-	chr2_3:31072397-31072416	None:intergenic	30.0%
TGATGTTAAATTCGACATAG+AGG	+	chr2_3:31072408-31072427	Msa0287790:CDS	30.0%
GAAGAAACTAACCTTAAACT+GGG	-	chr2_3:31072848-31072867	None:intergenic	30.0%
TGAAGAAACTAACCTTAAAC+TGG	-	chr2_3:31072849-31072868	None:intergenic	30.0%
TGAATTGAAGTGTATATGCT+TGG	+	chr2_3:31072907-31072926	Msa0287790:intron	30.0%

Showing 1 to 10 of 926 entries

Previous1 2 3 4 5…93Next

Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	31071831	31082698	31071831	ID=Msa0287790;Name=Msa0287790
chr2_3	mRNA	31071831	31082698	31071831	ID=Msa0287790-mRNA-1;Parent=Msa0287790;Name=Msa0287790-mRNA-1;_AED=0.12;_eAED=0.12;_QI=236\|1\|1\|1\|1\|1\|9\|676\|1340
chr2_3	exon	31071831	31072855	31071831	ID=Msa0287790-mRNA-1:exon:10592;Parent=Msa0287790-mRNA-1
chr2_3	exon	31075326	31075573	31075326	ID=Msa0287790-mRNA-1:exon:10593;Parent=Msa0287790-mRNA-1
chr2_3	exon	31076602	31076728	31076602	ID=Msa0287790-mRNA-1:exon:10594;Parent=Msa0287790-mRNA-1
chr2_3	exon	31076807	31076875	31076807	ID=Msa0287790-mRNA-1:exon:10595;Parent=Msa0287790-mRNA-1
chr2_3	exon	31076980	31077120	31076980	ID=Msa0287790-mRNA-1:exon:10596;Parent=Msa0287790-mRNA-1
chr2_3	exon	31077283	31077384	31077283	ID=Msa0287790-mRNA-1:exon:10597;Parent=Msa0287790-mRNA-1
chr2_3	exon	31077491	31077837	31077491	ID=Msa0287790-mRNA-1:exon:10598;Parent=Msa0287790-mRNA-1
chr2_3	exon	31078502	31080143	31078502	ID=Msa0287790-mRNA-1:exon:10599;Parent=Msa0287790-mRNA-1
chr2_3	exon	31081465	31082698	31081465	ID=Msa0287790-mRNA-1:exon:10600;Parent=Msa0287790-mRNA-1
chr2_3	five_prime_UTR	31071831	31072066	31071831	ID=Msa0287790-mRNA-1:five_prime_utr;Parent=Msa0287790-mRNA-1
chr2_3	CDS	31072067	31072855	31072067	ID=Msa0287790-mRNA-1:cds;Parent=Msa0287790-mRNA-1
chr2_3	CDS	31075326	31075573	31075326	ID=Msa0287790-mRNA-1:cds;Parent=Msa0287790-mRNA-1
chr2_3	CDS	31076602	31076728	31076602	ID=Msa0287790-mRNA-1:cds;Parent=Msa0287790-mRNA-1
chr2_3	CDS	31076807	31076875	31076807	ID=Msa0287790-mRNA-1:cds;Parent=Msa0287790-mRNA-1
chr2_3	CDS	31076980	31077120	31076980	ID=Msa0287790-mRNA-1:cds;Parent=Msa0287790-mRNA-1
chr2_3	CDS	31077283	31077384	31077283	ID=Msa0287790-mRNA-1:cds;Parent=Msa0287790-mRNA-1
chr2_3	CDS	31077491	31077837	31077491	ID=Msa0287790-mRNA-1:cds;Parent=Msa0287790-mRNA-1
chr2_3	CDS	31078502	31080143	31078502	ID=Msa0287790-mRNA-1:cds;Parent=Msa0287790-mRNA-1
chr2_3	CDS	31081465	31082022	31081465	ID=Msa0287790-mRNA-1:cds;Parent=Msa0287790-mRNA-1
chr2_3	three_prime_UTR	31082023	31082698	31082023	ID=Msa0287790-mRNA-1:three_prime_utr;Parent=Msa0287790-mRNA-1

Gene Sequence

>Msa0287790

ATGGACGACGACGACGAATTCGGAGATTTATACACCGATGTTCTCCGTCCTTTTGCCATAGAATCAACACCCCCCTCTTCTGTTATTCACACCTCCCCTCCTCCACCCCCTTCCATCGATCTCAATCAGATCCCCTGCGCCACATCCAACTCTATCCACGATACACCTCATCAAATCGATCCTCCTGAAACCGCCCCAACACAAGATGACCCGCCTGTTGAAATTGAAATTGAAAAGGAACCTGAATCGGCTGACGGTCTTAGGGTTCTTCTTGAACCGCCGGATTCGAAACCGGTCGCGGTTGAGGCTGTTGTTGAAGGCAACGATCCGATGGATCAAGATGATGTTAAATTCGACATAGAGGAAGAGAATGAAGAAGGTGGAGGCACAGAGCCGCTGATTCCGGGATTATCTGGAGGAGGTGGTGGTGGTGGTGGTGGGAATGATGATGATTGGGACAGTGACAGTGACGATGATTTACAGATAGTGTTGAATGATGACAATCACATGGCCATGGCGATGGAAAAAAGTGGCGTTGTGGGTGACGATGACGACGAAGATGATGATGAAGATGGTGGCCTTGTCATTGTAGCTGGTGAGCCTAATCAGGGGTTGGAAGAGCAAGAGTGGGGGGAGAGTGCCAATGTTCCGGTGGATGGTGAGAGAAAGGATGCCGTGGAACCGGGGAAGGCAGTCGCGGGTCCCGCTGCTGGTGGCATTCCTGTTGTTCCTAAAGTTGGTTATGGTAGTCATGTTCATGGGTATCATCCATTTCATTCCCAGTTTAAGTATATTAGGCCTGGTGCGACAACAATACCCGGAGCTCCTGGTGCTGCTCAAGGAGGTCCTCCTGGTCAGATTCGTCCACTTGCTAACATGATTGGTCGGGGTAGAGGAGATTGGAGACCACCTGGAATAAAAGGAGCTATTGGTATGCAAAAAGGTTTTCATGCGGGTCCTGGACTACCTAGTTGGGGCAACAATGCTGCAGGGCGGGGTTTTGGTGGTGGATTGGAATTCACTCTTCCTTCTCACAAAACTATATTTGACGTTGATATTGAGAGTTTTGAGGAGAAATTGTGGAAATATCCAAATGTTGATGCATCAGATTTTTTCAACTTCGGTTTGAATGAAGAGACCTGGAAAGATTATTGCAAACAGCTGGAGCAACTACGCCTGGAGTCTACAATGCAAAGCAAGATCCGTGTTTACGAGAGTGGTCGAACAGAGCATGATTATGATCCAGATTTGCCCCCTGAATTGGCTGCAGCTACTGGTTTACACGACGGTGCTGTTGAAAATGCAAATTCTGTAAAATCCGATGTGGGACAAAGTGATGTTATGAAAGGTTCTGGACGCATGCGACCGCCGATACCAACTGGTAGAGCAATACAGGTGGAAGGTGGCTATGGAGAACGTCTTCCTACCATTGATACCCGTCCTCCTCGATTGCGTGATTCAGATGCAATAATTGAGATTGTTTTACAGGGTGCCGAAGATGATGATTCCTCTGTGGGAGTAGGTGTCCAAGATCAATCAGAGGATGGAGAACCCCAGAGGGAGAGTTTTAGAGAAGACCTTGAAGCTGGAGATGAACCAAGTTTGGAGCCTGAGTATTCTGATGGTATTCCACAGGATTATAATCGACGAAAGAAAGAGCATGCAGGAAGAAAAATGCCATTTGTGACTTCTGTCTCTTCTAATGTAGCTAATGAAGATGAAAGCTTGTTCGTCGTCCAGGATGAGCCAATTGAATACTCTGGCTCAAGGGGCCAAAATCCCAGGTCTTATGGTGGCAATTCCAGCTCTTCTCAAGAGGAAAGGAAAATGCAAAAAACAGTGCGTAGTCAATCGCCTATTAGTCCTATCCGAAAACTGAATACAGATGACAATAAAAAAGAAGATTCAGTTGAAAGCATGGAAGTCAAAGATACCACACTTTCGTCTTCTCCTGTCATTGAGGATGTAAAGGAGTCCAGTTTGGAGGACAAAGATGGCGAGCTTGAGGATACTGGGACCGCTGATGGAAGTCCTAGATTGGGAAAGAAAGAAATTGATTTAAATGCAGTAGACAAGGTTGATGTCCTCAAGGATGGGATAGATAAGAAACAGAATTTGACATCTCAAGCTGAGCAACCTTTGCTTGATGAGAGTGATGATTGGGAGGACTTAAAAGCTGCCAGAAGCAGCGATAACAGCAAAGCAAGGTCAGCAAGCAGCAGAGATAATCAGAAACGACGAGAGGGTCTTGATGAAGAAGTAGTCCAGGATCCACGATCAACACGTCTGGCTAGCATCAGACAACACCCAGATGAAAATGAGCAGGGATTCTATAGAAGAGAGCATGATGGAAAGCAAGATCCCGAAAGAAATCACATGGTACTTAGAGGTAGAGAGGGATCATACCCTTACAAGGACCGACATCGTAGCTTGGCCCATCAATTGCATACAAATACTGACGGATTTGATAGGCAAAAAGATAGGGACAGTTCTGACATGGATTGGGCAAGGAGAGATGATGACGTCTATAACAGAAAGATTAGAACTAATGAACCTAGAAAGAGGGATAGGGCTAAGCTTCGAGAAAATGAGAGAAACGACAAAGAAGATAGCTTTCACTCTAGAAAGCAGTTGGATAATGGTAGCTACAGGATTCCTTATGAAAAGGATGTTGGGTCAAGAGACTCAAGACACAGGGAAAGAGATGAGGGCGTGAGGGTTAGGTACGAAGCTGTGGAGGATTACCATATCAAGAGGAGAAAGGACGAGGAGTATCTTAGGAGGGAACATATGGACAAAGAAGATATTCCACATGGCTACAGAGAAAATGCTAGTCGGCGTAGACGAGAAAGAGATGAAGTATTGGATCAACGTAAGAGAGATGAAATGCAAAGAAGTAGAGATTACCCTGATGATCAATACACCAATAGGCAGAAAGATGATGCCTGGCTAATGCAGGAGAGGGGCGATAGGCAAAGAGATAGGGAGGAGTGGCATCGGTTGAAACTGTCCCATGATGGACCCCTACCTAAGCGTGAAAGAGAGGAAGGAAGGAGTTCTGGAAGAAGTGTACGAGGGGCTGAAGAAAAAGCATGGGTTGGCCGTGTTAGTGCTAAAGATGAACATAAACTTTCTGAGAAAGATTACCAATCTAGGGAATCAGTTCGACACAATGACCAACTAAAGAGAAGGGATCGGATTCCAGAAGAAAGTTCACATCATAAGGGGCGGGATGATGCTTATGCCCGTGGAAATCAATATACCGCTGAAGAAAGGCGATCTAGGCAGGAAAGGTCAAGTAGTCGTAGTGATCGTGTTGCTAATGCTTCAGATAACCAAAGACTTCACGAGAGGAAACATAAAGAGGGCTCAAGGAAAAGCAAAGAGCGTGATATTAGTGACCTCAATAGTTTAGGTCTGTCCAAGAAAAGTCTAGAAAATCCAAATGGTCCATCAAATGAGAAGGGCTTGAAAGAATCTGGTGATCAAGAACGTGCTGAGCATGAAATCCCAGGGCATCGCCTGTCCAGGAAACACCAGGACGGCATTTCTTCCGATGATGAACAGCAAGATTCTTACAGAGGACGTTCTAAACTGGAGCGCTGGACAAGCCATAAGGAAAGAGATTTCAGTATCAACAAGTCCTCCTCTTCCTTGAAGTTCAAAGACGTTGATAAGAATAATAATGGTGGGTCTTCTGAAGCTGGGAAACCTGTGGATGAATCTGCTAAAACAGTTGATTTGGATAACCAACAACCCTTGATGCCTGAAGCAAGGGATTCTGTAGACAGGGAGAGCAGGGATGGTGATTCCAAGGAATCAGGGGATCGGCACCTGGACACAGTTGAGAGGCTGAAGAAACGGAGTGAGCGGTTCAAGCTCCCAATGCCAAGTGAAAAAGAAACCCAGGTTATCAAGAAGCTAGAGAGTGAACCTTTGCCTTCTGCCAAAACTGAAAATCCAGTGGAGTCAGAGGTCAAACAAGAGAGACCTCCCAGAAAAAGGAGATGGATCAGTAACTAA

Protein sequence

>Msa0287790

MDDDDEFGDLYTDVLRPFAIESTPPSSVIHTSPPPPPSIDLNQIPCATSNSIHDTPHQIDPPETAPTQDDPPVEIEIEKEPESADGLRVLLEPPDSKPVAVEAVVEGNDPMDQDDVKFDIEEENEEGGGTEPLIPGLSGGGGGGGGGNDDDWDSDSDDDLQIVLNDDNHMAMAMEKSGVVGDDDDEDDDEDGGLVIVAGEPNQGLEEQEWGESANVPVDGERKDAVEPGKAVAGPAAGGIPVVPKVGYGSHVHGYHPFHSQFKYIRPGATTIPGAPGAAQGGPPGQIRPLANMIGRGRGDWRPPGIKGAIGMQKGFHAGPGLPSWGNNAAGRGFGGGLEFTLPSHKTIFDVDIESFEEKLWKYPNVDASDFFNFGLNEETWKDYCKQLEQLRLESTMQSKIRVYESGRTEHDYDPDLPPELAAATGLHDGAVENANSVKSDVGQSDVMKGSGRMRPPIPTGRAIQVEGGYGERLPTIDTRPPRLRDSDAIIEIVLQGAEDDDSSVGVGVQDQSEDGEPQRESFREDLEAGDEPSLEPEYSDGIPQDYNRRKKEHAGRKMPFVTSVSSNVANEDESLFVVQDEPIEYSGSRGQNPRSYGGNSSSSQEERKMQKTVRSQSPISPIRKLNTDDNKKEDSVESMEVKDTTLSSSPVIEDVKESSLEDKDGELEDTGTADGSPRLGKKEIDLNAVDKVDVLKDGIDKKQNLTSQAEQPLLDESDDWEDLKAARSSDNSKARSASSRDNQKRREGLDEEVVQDPRSTRLASIRQHPDENEQGFYRREHDGKQDPERNHMVLRGREGSYPYKDRHRSLAHQLHTNTDGFDRQKDRDSSDMDWARRDDDVYNRKIRTNEPRKRDRAKLRENERNDKEDSFHSRKQLDNGSYRIPYEKDVGSRDSRHRERDEGVRVRYEAVEDYHIKRRKDEEYLRREHMDKEDIPHGYRENASRRRRERDEVLDQRKRDEMQRSRDYPDDQYTNRQKDDAWLMQERGDRQRDREEWHRLKLSHDGPLPKREREEGRSSGRSVRGAEEKAWVGRVSAKDEHKLSEKDYQSRESVRHNDQLKRRDRIPEESSHHKGRDDAYARGNQYTAEERRSRQERSSSRSDRVANASDNQRLHERKHKEGSRKSKERDISDLNSLGLSKKSLENPNGPSNEKGLKESGDQERAEHEIPGHRLSRKHQDGISSDDEQQDSYRGRSKLERWTSHKERDFSINKSSSSLKFKDVDKNNNGGSSEAGKPVDESAKTVDLDNQQPLMPEARDSVDRESRDGDSKESGDRHLDTVERLKKRSERFKLPMPSEKETQVIKKLESEPLPSAKTENPVESEVKQERPPRKRRWISN*