Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0958540 | A0A072UBD1 | 84.783 | 92 | 12 | 1 | 44 | 135 | 1 | 90 | 8.89e-44 | 148 |
Gene ID | Type | Classification |
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Gene ID | Type | Classification |
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Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0114430 | Msa0958540 | 0.804539 | 2.057437e-49 | -8.615850e-47 |
Msa0768290 | Msa0958540 | 0.815041 | 1.132479e-51 | -8.615850e-47 |
Msa0832340 | Msa0958540 | 0.805674 | 1.191035e-49 | -8.615850e-47 |
Msa0131770 | Msa0958540 | 0.800461 | 1.425961e-48 | -8.615850e-47 |
Msa0278110 | Msa0958540 | 0.801433 | 9.023158e-49 | -8.615850e-47 |
Msa0495330 | Msa0958540 | 0.809433 | 1.896787e-50 | -8.615850e-47 |
Msa0545700 | Msa0958540 | 0.827807 | 1.275501e-54 | -8.615850e-47 |
Msa0849030 | Msa0958540 | 0.804018 | 2.641780e-49 | -8.615850e-47 |
Msa0899450 | Msa0958540 | 0.815668 | 8.215771e-52 | -8.615850e-47 |
Msa0925290 | Msa0958540 | 0.806660 | 7.382956e-50 | -8.615850e-47 |
Msa0927380 | Msa0958540 | 0.881542 | 2.201089e-70 | -8.615850e-47 |
Msa0927390 | Msa0958540 | 0.813481 | 2.504476e-51 | -8.615850e-47 |
Msa0958540 | Msa0964900 | 0.875411 | 3.146550e-68 | -8.615850e-47 |
Msa0958540 | Msa0969520 | 0.809021 | 2.324814e-50 | -8.615850e-47 |
Msa0958540 | Msa0976670 | 0.808795 | 2.598329e-50 | -8.615850e-47 |
Msa0958540 | Msa0999220 | 0.821802 | 3.326551e-53 | -8.615850e-47 |
Msa0958540 | Msa1118330 | 0.804276 | 2.335125e-49 | -8.615850e-47 |
Msa0958540 | Msa1137570 | 0.820952 | 5.225832e-53 | -8.615850e-47 |
Msa0958540 | Msa1286800 | 0.803759 | 2.990770e-49 | -8.615850e-47 |
Msa0958540 | Msa1288050 | 0.804169 | 2.457812e-49 | -8.615850e-47 |
Msa0958540 | Msa1353470 | 0.802364 | 5.809172e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0958540 | MtrunA17_Chr6g0485511 | 62.097 | 124 | 13 | 2 | 44 | 135 | 1 | 122 | 3.36e-40 | 130 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Find 26 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTTCATTCTCCTGCTGGTT+TGG | 0.290743 | 6_3:-72519576 | None:intergenic |
TTAGATGTACCTTCTTCATT+TGG | 0.332645 | 6_3:-72519540 | None:intergenic |
TCAGCCTTCGAAGTTCTTTA+CGG | 0.344809 | 6_3:-72518737 | None:intergenic |
CTTAAGCTTCATTCTCCTGC+TGG | 0.359038 | 6_3:-72519581 | None:intergenic |
AAATGAAGAAGGTACATCTA+AGG | 0.414920 | 6_3:+72519542 | Msa0958540:CDS |
CCACATCTCAAAACCGCAAA+TGG | 0.423400 | 6_3:+72518993 | Msa0958540:CDS |
GAAGTGGAAGTGGCGGAAGC+CGG | 0.426962 | 6_3:-72519022 | None:intergenic |
AAGTGGAAGTGGCGGAAGCC+GGG | 0.428762 | 6_3:-72519021 | None:intergenic |
AAGCCGGGTGGAGCCATTTG+CGG | 0.466138 | 6_3:-72519006 | None:intergenic |
ATGCTGAAAACTGCGTGGTT+TGG | 0.474624 | 6_3:+72518681 | Msa0958540:CDS |
TCGTCAATCACACTGCAAAC+AGG | 0.488932 | 6_3:-72519048 | None:intergenic |
GTATGCAGCGCGGACTGCCC+TGG | 0.503284 | 6_3:+72519398 | Msa0958540:intron |
AAACAGGAGGGAAGTGGAAG+TGG | 0.512473 | 6_3:-72519032 | None:intergenic |
CACTGCAAACAGGAGGGAAG+TGG | 0.520900 | 6_3:-72519038 | None:intergenic |
AGCTGAAGTTCCAAACCAGC+AGG | 0.526615 | 6_3:+72519566 | Msa0958540:CDS |
GAAAACTGCGTGGTTTGGCA+AGG | 0.583493 | 6_3:+72518686 | Msa0958540:CDS |
CGAACTTTCTGCAGAACCCA+AGG | 0.585785 | 6_3:+72519068 | Msa0958540:CDS |
GCTGAAGTTCCAAATGAAGA+AGG | 0.589203 | 6_3:+72519531 | Msa0958540:CDS |
AAAACTGCGTGGTTTGGCAA+GGG | 0.599527 | 6_3:+72518687 | Msa0958540:CDS |
TCAATCACACTGCAAACAGG+AGG | 0.629072 | 6_3:-72519045 | None:intergenic |
CAGGAGGGAAGTGGAAGTGG+CGG | 0.629148 | 6_3:-72519029 | None:intergenic |
AAACCGCAAATGGCTCCACC+CGG | 0.634759 | 6_3:+72519003 | Msa0958540:CDS |
TGGAAGTGGCGGAAGCCGGG+TGG | 0.646475 | 6_3:-72519018 | None:intergenic |
AAAACCGTAAAGAACTTCGA+AGG | 0.659678 | 6_3:+72518733 | Msa0958540:CDS |
CAATCACACTGCAAACAGGA+GGG | 0.665161 | 6_3:-72519044 | None:intergenic |
TATTTATGCTGAAAACTGCG+TGG | 0.707815 | 6_3:+72518676 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTATTAAAGAACTCAAAATA+TGG | - | chr6_3:72519174-72519193 | None:intergenic | 15.0% |
!! | TTATTAAAGAACTCAAAATA+TGG | - | chr6_3:72519174-72519193 | None:intergenic | 15.0% |
!! | AAAGCAAATTAAAAAACATG+AGG | + | chr6_3:72518761-72518780 | Msa0958540:CDS | 20.0% |
!! | TGAAATGTTAACAAAGTTTA+TGG | + | chr6_3:72519103-72519122 | Msa0958540:intron | 20.0% |
!! | GAAATGTTAACAAAGTTTAT+GGG | + | chr6_3:72519104-72519123 | Msa0958540:intron | 20.0% |
!! | AAATGTTAACAAAGTTTATG+GGG | + | chr6_3:72519105-72519124 | Msa0958540:intron | 20.0% |
!!! | ATATGAGCAATAGTAATTTT+AGG | - | chr6_3:72519230-72519249 | None:intergenic | 20.0% |
!! | AAAGCAAATTAAAAAACATG+AGG | + | chr6_3:72518761-72518780 | Msa0958540:CDS | 20.0% |
!! | TGAAATGTTAACAAAGTTTA+TGG | + | chr6_3:72519103-72519122 | Msa0958540:intron | 20.0% |
!! | GAAATGTTAACAAAGTTTAT+GGG | + | chr6_3:72519104-72519123 | Msa0958540:intron | 20.0% |
!! | AAATGTTAACAAAGTTTATG+GGG | + | chr6_3:72519105-72519124 | Msa0958540:intron | 20.0% |
!!! | ATATGAGCAATAGTAATTTT+AGG | - | chr6_3:72519230-72519249 | None:intergenic | 20.0% |
!!! | AGAAAGAAGCTGATTTTAAA+AGG | + | chr6_3:72519436-72519455 | Msa0958540:CDS | 25.0% |
!!! | GAAAGAAGCTGATTTTAAAA+GGG | + | chr6_3:72519437-72519456 | Msa0958540:CDS | 25.0% |
!!! | AGAAAGAAGCTGATTTTAAA+AGG | + | chr6_3:72519436-72519455 | Msa0958540:CDS | 25.0% |
!!! | GAAAGAAGCTGATTTTAAAA+GGG | + | chr6_3:72519437-72519456 | Msa0958540:CDS | 25.0% |
TCAACTACAATTGATTGAAG+AGG | - | chr6_3:72518838-72518857 | None:intergenic | 30.0% | |
ATTGCTGAGAATAATGTTGT+CGG | + | chr6_3:72518882-72518901 | Msa0958540:intron | 30.0% | |
TTCATGAAAAAACTTGCCTT+GGG | - | chr6_3:72519087-72519106 | None:intergenic | 30.0% | |
TTTCATGAAAAAACTTGCCT+TGG | - | chr6_3:72519088-72519107 | None:intergenic | 30.0% | |
TAAATTTAAAGAACTTGCCG+CGG | - | chr6_3:72519297-72519316 | None:intergenic | 30.0% | |
TTAGATGTACCTTCTTCATT+TGG | - | chr6_3:72519543-72519562 | None:intergenic | 30.0% | |
! | AAATGAAGAAGGTACATCTA+AGG | + | chr6_3:72519542-72519561 | Msa0958540:CDS | 30.0% |
TCAACTACAATTGATTGAAG+AGG | - | chr6_3:72518838-72518857 | None:intergenic | 30.0% | |
ATTGCTGAGAATAATGTTGT+CGG | + | chr6_3:72518882-72518901 | Msa0958540:intron | 30.0% | |
TTCATGAAAAAACTTGCCTT+GGG | - | chr6_3:72519087-72519106 | None:intergenic | 30.0% | |
TTTCATGAAAAAACTTGCCT+TGG | - | chr6_3:72519088-72519107 | None:intergenic | 30.0% | |
TAAATTTAAAGAACTTGCCG+CGG | - | chr6_3:72519297-72519316 | None:intergenic | 30.0% | |
TTAGATGTACCTTCTTCATT+TGG | - | chr6_3:72519543-72519562 | None:intergenic | 30.0% | |
! | AAATGAAGAAGGTACATCTA+AGG | + | chr6_3:72519542-72519561 | Msa0958540:CDS | 30.0% |
! | TCGAAGTTCTTTACGGTTTT+TGG | - | chr6_3:72518733-72518752 | None:intergenic | 35.0% |
AAAACCGTAAAGAACTTCGA+AGG | + | chr6_3:72518733-72518752 | Msa0958540:CDS | 35.0% | |
GATTGAAGAGGAAAACAAGA+AGG | - | chr6_3:72518826-72518845 | None:intergenic | 35.0% | |
AGAATAATGTTGTCGGATTC+AGG | + | chr6_3:72518889-72518908 | Msa0958540:intron | 35.0% | |
GAATAATGTTGTCGGATTCA+GGG | + | chr6_3:72518890-72518909 | Msa0958540:intron | 35.0% | |
AATAATGTTGTCGGATTCAG+GGG | + | chr6_3:72518891-72518910 | Msa0958540:intron | 35.0% | |
! | TTTTAGGCTTCAATTTCTGC+TGG | - | chr6_3:72519214-72519233 | None:intergenic | 35.0% |
AAATTTAAAGAACTTGCCGC+GGG | - | chr6_3:72519296-72519315 | None:intergenic | 35.0% | |
!! | CTGCTTTTCAATTTCATCCA+GGG | - | chr6_3:72519418-72519437 | None:intergenic | 35.0% |
!! | TCTGCTTTTCAATTTCATCC+AGG | - | chr6_3:72519419-72519438 | None:intergenic | 35.0% |
AGATGAAAAAGCTGCATCTA+AGG | + | chr6_3:72519506-72519525 | Msa0958540:CDS | 35.0% | |
! | TCGAAGTTCTTTACGGTTTT+TGG | - | chr6_3:72518733-72518752 | None:intergenic | 35.0% |
AAAACCGTAAAGAACTTCGA+AGG | + | chr6_3:72518733-72518752 | Msa0958540:CDS | 35.0% | |
GATTGAAGAGGAAAACAAGA+AGG | - | chr6_3:72518826-72518845 | None:intergenic | 35.0% | |
AGAATAATGTTGTCGGATTC+AGG | + | chr6_3:72518889-72518908 | Msa0958540:intron | 35.0% | |
GAATAATGTTGTCGGATTCA+GGG | + | chr6_3:72518890-72518909 | Msa0958540:intron | 35.0% | |
AATAATGTTGTCGGATTCAG+GGG | + | chr6_3:72518891-72518910 | Msa0958540:intron | 35.0% | |
! | TTTTAGGCTTCAATTTCTGC+TGG | - | chr6_3:72519214-72519233 | None:intergenic | 35.0% |
AAATTTAAAGAACTTGCCGC+GGG | - | chr6_3:72519296-72519315 | None:intergenic | 35.0% | |
!! | CTGCTTTTCAATTTCATCCA+GGG | - | chr6_3:72519418-72519437 | None:intergenic | 35.0% |
!! | TCTGCTTTTCAATTTCATCC+AGG | - | chr6_3:72519419-72519438 | None:intergenic | 35.0% |
AGATGAAAAAGCTGCATCTA+AGG | + | chr6_3:72519506-72519525 | Msa0958540:CDS | 35.0% | |
TCAGCCTTCGAAGTTCTTTA+CGG | - | chr6_3:72518740-72518759 | None:intergenic | 40.0% | |
TTAACCTCTAAACCAGCAGT+TGG | + | chr6_3:72519368-72519387 | Msa0958540:intron | 40.0% | |
GCTGAAGTTCCAAATGAAGA+AGG | + | chr6_3:72519531-72519550 | Msa0958540:CDS | 40.0% | |
TCAGCCTTCGAAGTTCTTTA+CGG | - | chr6_3:72518740-72518759 | None:intergenic | 40.0% | |
TTAACCTCTAAACCAGCAGT+TGG | + | chr6_3:72519368-72519387 | Msa0958540:intron | 40.0% | |
GCTGAAGTTCCAAATGAAGA+AGG | + | chr6_3:72519531-72519550 | Msa0958540:CDS | 40.0% | |
ATGCTGAAAACTGCGTGGTT+TGG | + | chr6_3:72518681-72518700 | Msa0958540:CDS | 45.0% | |
! | AAAACTGCGTGGTTTGGCAA+GGG | + | chr6_3:72518687-72518706 | Msa0958540:CDS | 45.0% |
TTGTCGGATTCAGGGGTTTA+GGG | + | chr6_3:72518898-72518917 | Msa0958540:intron | 45.0% | |
ATGTGGCAGTTAAACTGCAG+AGG | - | chr6_3:72518979-72518998 | None:intergenic | 45.0% | |
!!! | CCATTTGCGGTTTTGAGATG+TGG | - | chr6_3:72518996-72519015 | None:intergenic | 45.0% |
CCACATCTCAAAACCGCAAA+TGG | + | chr6_3:72518993-72519012 | Msa0958540:CDS | 45.0% | |
CAATCACACTGCAAACAGGA+GGG | - | chr6_3:72519047-72519066 | None:intergenic | 45.0% | |
TCAATCACACTGCAAACAGG+AGG | - | chr6_3:72519048-72519067 | None:intergenic | 45.0% | |
TCGTCAATCACACTGCAAAC+AGG | - | chr6_3:72519051-72519070 | None:intergenic | 45.0% | |
TGTGTCTGATTTACAACCCG+CGG | + | chr6_3:72519277-72519296 | Msa0958540:intron | 45.0% | |
!! | AACTCCAACTGCTGGTTTAG+AGG | - | chr6_3:72519375-72519394 | None:intergenic | 45.0% |
CATACAACAACTCCAACTGC+TGG | - | chr6_3:72519383-72519402 | None:intergenic | 45.0% | |
!! | GCTGATTTTAAAAGGGCTGC+AGG | + | chr6_3:72519444-72519463 | Msa0958540:CDS | 45.0% |
ATGCTGAAAACTGCGTGGTT+TGG | + | chr6_3:72518681-72518700 | Msa0958540:CDS | 45.0% | |
! | AAAACTGCGTGGTTTGGCAA+GGG | + | chr6_3:72518687-72518706 | Msa0958540:CDS | 45.0% |
TTGTCGGATTCAGGGGTTTA+GGG | + | chr6_3:72518898-72518917 | Msa0958540:intron | 45.0% | |
ATGTGGCAGTTAAACTGCAG+AGG | - | chr6_3:72518979-72518998 | None:intergenic | 45.0% | |
!!! | CCATTTGCGGTTTTGAGATG+TGG | - | chr6_3:72518996-72519015 | None:intergenic | 45.0% |
CCACATCTCAAAACCGCAAA+TGG | + | chr6_3:72518993-72519012 | Msa0958540:CDS | 45.0% | |
CAATCACACTGCAAACAGGA+GGG | - | chr6_3:72519047-72519066 | None:intergenic | 45.0% | |
TCAATCACACTGCAAACAGG+AGG | - | chr6_3:72519048-72519067 | None:intergenic | 45.0% | |
TCGTCAATCACACTGCAAAC+AGG | - | chr6_3:72519051-72519070 | None:intergenic | 45.0% | |
TGTGTCTGATTTACAACCCG+CGG | + | chr6_3:72519277-72519296 | Msa0958540:intron | 45.0% | |
!! | AACTCCAACTGCTGGTTTAG+AGG | - | chr6_3:72519375-72519394 | None:intergenic | 45.0% |
CATACAACAACTCCAACTGC+TGG | - | chr6_3:72519383-72519402 | None:intergenic | 45.0% | |
!! | GCTGATTTTAAAAGGGCTGC+AGG | + | chr6_3:72519444-72519463 | Msa0958540:CDS | 45.0% |
! | GAAAACTGCGTGGTTTGGCA+AGG | + | chr6_3:72518686-72518705 | Msa0958540:CDS | 50.0% |
GTTGTCGGATTCAGGGGTTT+AGG | + | chr6_3:72518897-72518916 | Msa0958540:intron | 50.0% | |
AAACAGGAGGGAAGTGGAAG+TGG | - | chr6_3:72519035-72519054 | None:intergenic | 50.0% | |
CGAACTTTCTGCAGAACCCA+AGG | + | chr6_3:72519068-72519087 | Msa0958540:CDS | 50.0% | |
TGGAGTTGTTGTATGCAGCG+CGG | + | chr6_3:72519388-72519407 | Msa0958540:intron | 50.0% | |
AGCTGAAGTTCCAAACCAGC+AGG | + | chr6_3:72519566-72519585 | Msa0958540:CDS | 50.0% | |
! | GCTTCATTCTCCTGCTGGTT+TGG | - | chr6_3:72519579-72519598 | None:intergenic | 50.0% |
! | GAAAACTGCGTGGTTTGGCA+AGG | + | chr6_3:72518686-72518705 | Msa0958540:CDS | 50.0% |
GTTGTCGGATTCAGGGGTTT+AGG | + | chr6_3:72518897-72518916 | Msa0958540:intron | 50.0% | |
AAACAGGAGGGAAGTGGAAG+TGG | - | chr6_3:72519035-72519054 | None:intergenic | 50.0% | |
CGAACTTTCTGCAGAACCCA+AGG | + | chr6_3:72519068-72519087 | Msa0958540:CDS | 50.0% | |
TGGAGTTGTTGTATGCAGCG+CGG | + | chr6_3:72519388-72519407 | Msa0958540:intron | 50.0% | |
AGCTGAAGTTCCAAACCAGC+AGG | + | chr6_3:72519566-72519585 | Msa0958540:CDS | 50.0% | |
! | GCTTCATTCTCCTGCTGGTT+TGG | - | chr6_3:72519579-72519598 | None:intergenic | 50.0% |
AAACCGCAAATGGCTCCACC+CGG | + | chr6_3:72519003-72519022 | Msa0958540:CDS | 55.0% | |
CACTGCAAACAGGAGGGAAG+TGG | - | chr6_3:72519041-72519060 | None:intergenic | 55.0% | |
AAACCGCAAATGGCTCCACC+CGG | + | chr6_3:72519003-72519022 | Msa0958540:CDS | 55.0% | |
CACTGCAAACAGGAGGGAAG+TGG | - | chr6_3:72519041-72519060 | None:intergenic | 55.0% | |
AAGCCGGGTGGAGCCATTTG+CGG | - | chr6_3:72519009-72519028 | None:intergenic | 60.0% | |
! | AAGTGGAAGTGGCGGAAGCC+GGG | - | chr6_3:72519024-72519043 | None:intergenic | 60.0% |
! | GAAGTGGAAGTGGCGGAAGC+CGG | - | chr6_3:72519025-72519044 | None:intergenic | 60.0% |
CAGGAGGGAAGTGGAAGTGG+CGG | - | chr6_3:72519032-72519051 | None:intergenic | 60.0% | |
AAGCCGGGTGGAGCCATTTG+CGG | - | chr6_3:72519009-72519028 | None:intergenic | 60.0% | |
! | AAGTGGAAGTGGCGGAAGCC+GGG | - | chr6_3:72519024-72519043 | None:intergenic | 60.0% |
! | GAAGTGGAAGTGGCGGAAGC+CGG | - | chr6_3:72519025-72519044 | None:intergenic | 60.0% |
CAGGAGGGAAGTGGAAGTGG+CGG | - | chr6_3:72519032-72519051 | None:intergenic | 60.0% | |
! | TGGAAGTGGCGGAAGCCGGG+TGG | - | chr6_3:72519021-72519040 | None:intergenic | 70.0% |
! | GTATGCAGCGCGGACTGCCC+TGG | + | chr6_3:72519398-72519417 | Msa0958540:intron | 70.0% |
! | TGGAAGTGGCGGAAGCCGGG+TGG | - | chr6_3:72519021-72519040 | None:intergenic | 70.0% |
! | GTATGCAGCGCGGACTGCCC+TGG | + | chr6_3:72519398-72519417 | Msa0958540:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_3 | gene | 72518681 | 72519602 | 72518681 | ID=Msa0958540;Name=Msa0958540 |
chr6_3 | mRNA | 72518681 | 72519602 | 72518681 | ID=Msa0958540-mRNA-1;Parent=Msa0958540;Name=Msa0958540-mRNA-1;_AED=0.43;_eAED=0.43;_QI=0|0|0|1|1|1|3|0|135 |
chr6_3 | exon | 72518681 | 72518782 | 72518681 | ID=Msa0958540-mRNA-1:exon:13223;Parent=Msa0958540-mRNA-1 |
chr6_3 | exon | 72518985 | 72519093 | 72518985 | ID=Msa0958540-mRNA-1:exon:13224;Parent=Msa0958540-mRNA-1 |
chr6_3 | exon | 72519406 | 72519602 | 72519406 | ID=Msa0958540-mRNA-1:exon:13225;Parent=Msa0958540-mRNA-1 |
chr6_3 | CDS | 72518681 | 72518782 | 72518681 | ID=Msa0958540-mRNA-1:cds;Parent=Msa0958540-mRNA-1 |
chr6_3 | CDS | 72518985 | 72519093 | 72518985 | ID=Msa0958540-mRNA-1:cds;Parent=Msa0958540-mRNA-1 |
chr6_3 | CDS | 72519406 | 72519602 | 72519406 | ID=Msa0958540-mRNA-1:cds;Parent=Msa0958540-mRNA-1 |
Gene Sequence |
Protein sequence |